Pregenerated sensors for SIAH2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036432Ensembl transcript IDs: ENSMUST00000070368.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACTGCTACCTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTaGTTTTGTTGGCTCAGGATGAGGCAGGGGGAGGCAGCCCTGAGC | + |
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Preference number: 1 (lower is better) Translates to: NCYLLEITGLSGKSL*FCWLRMRQGEAALS Trigger: GCTCAGGGCTGCCTCCCCCTGCCTCATCCTGAGCCAACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAGGTAGCAGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR CCA 90 bp | CTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTGCTTTTGTTaGCTCAGGATGAGGCAGGGGGAGGCAGCCCTGAGCGATCTGTCA | + |
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Preference number: 1 (lower is better) Translates to: LLEITGLSGKSLCFC*LRMRQGEAALSDLS Trigger: TGACAGATCGCTCAGGGCTGCCTCCCCCTGCCTCATCCTGAGCCAACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR TCA 90 bp | GATCTGTCAAGAGCTGTTCAGGAAGGAAATAGAATAGAGTTGATTTaGGATCACCGAACCACCTCCAAATTACTAACAGGCCAACTCCGA | + |
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Preference number: 1 (lower is better) Translates to: DLSRAVQEGNRIELI*DHRTTSKLLTGQLR Trigger: TCGGAGTTGGCCTGTTAGTAATTTGGAGGTGGTTCGGTGATCTCAAATCAACTCTATTCTATTTCCTTCCTGAACAGCTCTTGACAGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR CAA 90 bp | CCTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTGCTTTTGTaGGCTCAGGATGAGGCAGGGGGAGGCAGCCCTGAGCGATCTGTC | + |
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Preference number: 2 (lower is better) Translates to: PPRNNGTLRKVTVLL*AQDEAGGGSPERSV Trigger: GACAGATCGCTCAGGGCTGCCTCCCCCTGCCTCATCCTGAGCCAACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR-3UTR TCA 90 bp | GTAGAGACCAACAGTGTCAGCAGAGGACGCCTTAAAGCACCTTTAGATCCTGGATTTGTTGGCTCAGGATaGGGCAGGGGGAGGCAGCCC | + |
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Preference number: 2 (lower is better) Translates to: VETNSVSRGRLKAPLDPGFVGSG*GRGRQP Trigger: GGGCTGCCTCCCCCTGCCTCATCCTGAGCCAACAAA...TCCAGGATCTAAAGGTGCTTTAAGGCGTCCTCTGCTGACACTGTTGGTCTCTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR-3UTR GCA 90 bp | ATGAGGCAGGGGGAGGCAGCCCTGAGCGATCTGTCAAGAGCTGTTCAGGAAGGAAAACATAGAGCGCTATaGCCAAATAACTTCCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: MRQGEAALSDLSRAVQEGKHRAL*PNNFPG Trigger: CCCTGGGAAGTTATTTGGGCATAGCGCTCTATGTTT...TCCTTCCTGAACAGCTCTTGACAGATCGCTCAGGGCTGCCTCCCCCTGCCTCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR-3UTR CCA 90 bp | ACCAACAGTGTCAGCAGAGGACGCCTTAAAGCACCTTTAGATCCTGGACCCTTGTCACTGTGCTTTTGTTaGCTCAGGATGAGGCAGGGG | + |
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Preference number: 2 (lower is better) Translates to: TNSVSRGRLKAPLDPGPLSLCFC*LRMRQG Trigger: CCCCTGCCTCATCCTGAGCCAACAAAAGCACAGTGA...CAAGGGTCCAGGATCTAAAGGTGCTTTAAGGCGTCCTCTGCTGACACTGTTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR-3UTR TCA 90 bp | CATGGATTTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTGAGGACGGACGTTGCTCAACTCTGTTaGTTCTCTAGCTCTGTGTTG | + |
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Preference number: 2 (lower is better) Translates to: HGFRVLVSMWCVQRLRTDVAQLC*FSSSVL Trigger: CAACACAGAGCTAGAGAATCAACAGAGTTGAGCAAC...GTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR-3UTR TCA 90 bp | CATGGATTTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTGAGGACGGACGATGAGTACTACAGGTaGTTCTGTGTAAATACCCAG | + |
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Preference number: 2 (lower is better) Translates to: HGFRVLVSMWCVQRLRTDDEYYR*FCVNTQ Trigger: CTGGGTATTTACACAGAATCACCTGTAGTACTCATC...GTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCCATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR TCA 72 bp | TTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTaGGGACGGACAGTAGAGACCAACAGTGTCAGCAGA | + |
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Preference number: 3 (lower is better) Translates to: LEFWSPCGVCRG*GRTVETNSVSR Trigger: TCTGCTGACACTGTTGGTCTCTACTGTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR GCA 72 bp | CTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTaGTTTTGTTGGCTCAGGATGAGGCAGGGGGAGGCA | + |
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Preference number: 3 (lower is better) Translates to: LLEITGLSGKSL*FCWLRMRQGEA Trigger: TGCCTCCCCCTGCCTCATCCTGAGCCAACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR CCA 72 bp | TTGCATCCCCATGGATTTAGAGTTCTGGTCTCCATGTaGTGTGTGCAGAGGCTGAGGACGGACAGTAGAGAC | + |
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Preference number: 3 (lower is better) Translates to: LHPHGFRVLVSM*CVQRLRTDSRD Trigger: GTCTCTACTGTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCCATGGGGATGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR-3UTR CAA 90 bp | CATGGATTTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTGAGGACGGACTCTGAGATGAGGAGGTaGCTCAACTCTGTTGATTCT | + |
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Preference number: 3 (lower is better) Translates to: HGFRVLVSMWCVQRLRTDSEMRR*LNSVDS Trigger: AGAATCAACAGAGTTGAGCAACCTCCTCATCTCAGA...GTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR-3UTR CAA 90 bp | TCAAACTCTGAGATGAGGAGGTTGCTCAACTCTGTTGATTCTCTAGCTCTGTGTGTCACTGTGCTTTTGTaGGCTCAGGATGAGGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: SNSEMRRLLNSVDSLALCVTVLL*AQDEAG Trigger: CCCTGCCTCATCCTGAGCCAACAAAAGCACAGTGAC...ACACAGAGCTAGAGAATCAACAGAGTTGAGCAACCTCCTCATCTCAGAGTTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR TCA 72 bp | CTCAACTCTGTTGATTCTCTAGCTCTGTGTTGGAGATaGGTACTACAGGTGATTCTGTGTAAATACCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: LNSVDSLALCWR*VLQVILCKYPA Trigger: GGCTGGGTATTTACACAGAATCACCTGTAGTACTCATCTCCAACACAGAGCTAGAGAATCAACAGAGTTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR TCA 72 bp | AGAGCTGTTCAGGAAGGAAATAGAATAGAGTTGATTTaGGATCACCGAACCACCTCCAAATTACTAACAGGC | + |
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Preference number: 3 (lower is better) Translates to: RAVQEGNRIELI*DHRTTSKLLTG Trigger: GCCTGTTAGTAATTTGGAGGTGGTTCGGTGATCTCAAATCAACTCTATTCTATTTCCTTCCTGAACAGCTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | GGATTTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTGAGGACGGACAGTAGCGAGGTCAGCTCGTaGTGCTGCGGGGACACCGGG | + |
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Preference number: 4 (lower is better) Translates to: GFRVLVSMWCVQRLRTDSSEVSS*CCGDTG Trigger: CCCGGTGTCCCCGCAGCACCACGAGCTGACCTCGCT...ACTGTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | GTAGAGACCAACAGTGTCAGCAGAGGACGCCTTAAAGCACCTTTAGATCCTGGAGTCAGCTCGTGGTGCTaGGGGGACACCGGGTCGGCC | + |
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Preference number: 4 (lower is better) Translates to: VETNSVSRGRLKAPLDPGVSSWC*GDTGSA Trigger: GGCCGACCCGGTGTCCCCGCAGCACCACGAGCTGAC...TCCAGGATCTAAAGGTGCTTTAAGGCGTCCTCTGCTGACACTGTTGGTCTCTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | ATGAGGCAGGGGGAGGCAGCCCTGAGCGATCTGTCAAGAGCTGTTCAGGAAGGAACAGGGAAACAGAACTaGCGAGGCGACCTTCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: MRQGEAALSDLSRAVQEGTGKQN*RGDLLH Trigger: ATGGAGAAGGTCGCCTCGGCAGTTCTGTTTCCCTGT...TCCTTCCTGAACAGCTCTTGACAGATCGCTCAGGGCTGCCTCCCCCTGCCTCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | CATGGATTTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTGAGGACGGACGAATGGACCGAGGTGTaGCCTCCCAGGTCAGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: HGFRVLVSMWCVQRLRTDEWTEV*PPRSVS Trigger: GGAGACTGACCTGGGAGGCCACACCTCGGTCCATTC...GTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | CATGGATTTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTGAGGACGGACCCTGGCACTGCAGAATaGGGGGCAGGACATAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: HGFRVLVSMWCVQRLRTDPGTAE*GAGHSQ Trigger: TTGACTATGTCCTGCCCCCCATTCTGCAGTGCCAGG...GTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCCATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR CAA 72 bp | AGAAATAACGGGACTCTCAGGAAAGTCACTGTGCTTTaGTTGGCTCAGGATGAGGCAGGGGGAGGCAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: RNNGTLRKVTVL*LAQDEAGGGSP Trigger: AGGGCTGCCTCCCCCTGCCTCATCCTGAGCCAACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | ATAGGACAGTTGTGGGTCTCGCCTCGGGAAGATGTACTGAATAAAACATCTATTGAGGTCAGCTCGTGGTaGTGCGGGGACACCGGGTCG | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVSPREDVLNKTSIEVSSW*CGDTGS Trigger: CGACCCGGTGTCCCCGCAGCACCACGAGCTGACCTC...AATAGATGTTTTATTCAGTACATCTTCCCGAGGCGAGACCCACAACTGTCCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | ATAGGACAGTTGTGGGTCTCGCCTCGGGAAGATGTACTGAATAAAACATCTATTGCGTTAGGGCGCCCCTaGACGTCGGGCAGCAGCTTA | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVSPREDVLNKTSIALGRP*TSGSSL Trigger: TAAGCTGCTGCCCGACGTGCAGGGGCGCCCTAACGC...AATAGATGTTTTATTCAGTACATCTTCCCGAGGCGAGACCCACAACTGTCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | GTAGAGACCAACAGTGTCAGCAGAGGACGCCTTAAAGCACCTTTAGATCCTGGAAACTTCTGGCGGCATTaGTTACACACCAGGTGCCCG | + |
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Preference number: 4 (lower is better) Translates to: VETNSVSRGRLKAPLDPGNFWRH*LHTRCP Trigger: CGGGCACCTGGTGTGTAACCAATGCCGCCAGAAGTT...TCCAGGATCTAAAGGTGCTTTAAGGCGTCCTCTGCTGACACTGTTGGTCTCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | TCAAACTCTGAGATGAGGAGGTTGCTCAACTCTGTTGATTCTCTAGCTCTGTGTGGGATCCCTGCCACTTaGAGGACGCACCAGGACAAG | + |
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Preference number: 4 (lower is better) Translates to: SNSEMRRLLNSVDSLALCGIPAT*RTHQDK Trigger: CTTGTCCTGGTGCGTCCTGCAAGTGGCAGGGATCCC...ACACAGAGCTAGAGAATCAACAGAGTTGAGCAACCTCCTCATCTCAGAGTTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | GGATTTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTGAGGACGGACAGTACTGTTCATGATGGCTaGAGCCACGCCATCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: GFRVLVSMWCVQRLRTDSTVHDG*SHAIMN Trigger: ATTCATGATGGCGTGGCTGCAGCCATCATGAACAGT...ACTGTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | ACCAACAGTGTCAGCAGAGGACGCCTTAAAGCACCTTTAGATCCTGGACCCTTGGCAAAGAACTGCTGGTaGCCTTCGTACTTCTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: TNSVSRGRLKAPLDPGPLAKNCW*PSYFSC Trigger: GCAAGAGAAGTACGAAGGCCACCAGCAGTTCTTTGC...CAAGGGTCCAGGATCTAAAGGTGCTTTAAGGCGTCCTCTGCTGACACTGTTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | GGATTTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTGAGGACGGACAGTATGGCAAAGAACTGCTaGTGGCCTTCGTACTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: GFRVLVSMWCVQRLRTDSMAKNC*WPSYFS Trigger: AGAGAAGTACGAAGGCCACCAGCAGTTCTTTGCCAT...ACTGTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | ATAGGACAGTTGTGGGTCTCGCCTCGGGAAGATGTACTGAATAAAACATCTATTTGGTTACACACCAGGTaGCCGGCCTGGCACTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVSPREDVLNKTSIWLHTR*PAWHCR Trigger: TCTGCAGTGCCAGGCCGGGCACCTGGTGTGTAACCA...AATAGATGTTTTATTCAGTACATCTTCCCGAGGCGAGACCCACAACTGTCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | ATAGGACAGTTGTGGGTCTCGCCTCGGGAAGATGTACTGAATAAAACATCTATTGCTTCCAGGGATCCCTaGCACTTGCAGGACGCACCA | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVSPREDVLNKTSIASRDP*HLQDAP Trigger: TGGTGCGTCCTGCAAGTGGCAGGGATCCCTGGAAGC...AATAGATGTTTTATTCAGTACATCTTCCCGAGGCGAGACCCACAACTGTCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR TCA 90 bp | TCAAACTCTGAGATGAGGAGGTTGCTCAACTCTGTTGATTCTCTAGCTCTGTGTGCTTTCGGGTGCCAATaGGGAGGACGATGGCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: SNSEMRRLLNSVDSLALCAFGCQ*GGRWQR Trigger: TCTTTGCCATCGTCCTCCTCATTGGCACCCGAAAGC...ACACAGAGCTAGAGAATCAACAGAGTTGAGCAACCTCCTCATCTCAGAGTTTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| 3UTR CAA 72 bp | AGAGGACGCCTTAAAGCACCTTTAGATCCTGGACCCTaGCCCACAATTCAAGCCAGTAATCCTCAAACTCTG | + |
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Preference number: 4 (lower is better) Translates to: RGRLKAPLDPGP*PTIQASNPQTL Trigger: CAGAGTTTGAGGATTACTGGCTTGAATTGTGGGCAAGGGTCCAGGATCTAAAGGTGCTTTAAGGCGTCCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR TCA 90 bp | CTGCTACCTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTGCTTTTGTTGTCTTGTGGGCATGCATaGGATGGGACATCACAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LLPPRNNGTLRKVTVLLLSCGHA*DGTSQL Trigger: AAGCTGTGATGTCCCATCTCATGCATGCCCACAAGA...CAACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAGGTAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | ACCAACAGTGTCAGCAGAGGACGCCTTAAAGCACCTTTAGATCCTGGACCCTTGAAGGTTCCCATTATCTaGAAAGAGATGTGCTATGGC | + |
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Preference number: 4 (lower is better) Translates to: TNSVSRGRLKAPLDPGPLKVPII*KEMCYG Trigger: GCCATAGCACATCTCTTTGCAGATAATGGGAACCTT...CAAGGGTCCAGGATCTAAAGGTGCTTTAAGGCGTCCTCTGCTGACACTGTTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | CTGCTACCTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTGCTTTTGTTGCAGCAGCTTAACTTCTaGCGGCATTGGTTACACACC | + |
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Preference number: 4 (lower is better) Translates to: LLPPRNNGTLRKVTVLLLQQLNF*RHWLHT Trigger: GGTGTGTAACCAATGCCGCCAGAAGTTAAGCTGCTG...CAACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAGGTAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | AACTGCTACCTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTGCTTTTGTTGGGCATGCATGAGATaGGACATCACAGCTTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: NCYLLEITGLSGKSLCFCWACMR*DITASR Trigger: CCTGGAAGCTGTGATGTCCCATCTCATGCATGCCCA...ACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAGGTAGCAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | CTGCTACCTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTGCTTTTGTTGAGTACCAGCATGAAGTaGTGGCCAAAACAGGACTGC | + |
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Preference number: 4 (lower is better) Translates to: LLPPRNNGTLRKVTVLLLSTSMK*WPKQDC Trigger: GCAGTCCTGTTTTGGCCACCACTTCATGCTGGTACT...CAACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAGGTAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR TCA 90 bp | CTGCTACCTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTGCTTTTGTTGTTTCAAGTACCAGCATaGAGTGGTGGCCAAAACAGG | + |
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Preference number: 4 (lower is better) Translates to: LLPPRNNGTLRKVTVLLLFQVPA*SGGQNR Trigger: CCTGTTTTGGCCACCACTTCATGCTGGTACTTGAAA...CAACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAGGTAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | AACTGCTACCTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTGCTTTTGTACGATGGCAAAGAACTaGTGGTGGCCTTCGTACTTC | + |
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Preference number: 4 (lower is better) Translates to: NCYLLEITGLSGKSLCFCTMAKN*WWPSYF Trigger: GAAGTACGAAGGCCACCAGCAGTTCTTTGCCATCGT...ACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAGGTAGCAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | ATAGGACAGTTGTGGGTCTCGCCTCGGGAAGATGTACTGAATAAAACATCTATTGCAAAGTTCTCAGCTTaGTTTCGGGTGCCAATGAGG | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVSPREDVLNKTSIAKFSA*FRVPMR Trigger: CCTCATTGGCACCCGAAAGCAAGCTGAGAACTTTGC...AATAGATGTTTTATTCAGTACATCTTCCCGAGGCGAGACCCACAACTGTCCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | TCAAACTCTGAGATGAGGAGGTTGCTCAACTCTGTTGATTCTCTAGCTCTGTGTTCTGGTTTCTCTGTATaGTGTAGAGTCAGGGAACAG | + |
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Preference number: 4 (lower is better) Translates to: SNSEMRRLLNSVDSLALCSGFSV*CRVREQ Trigger: CTGTTCCCTGACTCTACACCATACAGAGAAACCAGA...ACACAGAGCTAGAGAATCAACAGAGTTGAGCAACCTCCTCATCTCAGAGTTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | ATAGGACAGTTGTGGGTCTCGCCTCGGGAAGATGTACTGAATAAAACATCTATTGTAGTGATACTCTTGTaGGCATGCATGAGATGGGAC | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVSPREDVLNKTSIVVILL*ACMRWD Trigger: GTCCCATCTCATGCATGCCCACAAGAGTATCACTAC...AATAGATGTTTTATTCAGTACATCTTCCCGAGGCGAGACCCACAACTGTCCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR GCA 90 bp | CTGCTACCTCCTAGAAATAACGGGACTCTCAGGAAAGTCACTGTGCTTTTGTTGATCTGCAAAGAGATGTaGTATGGCTGTGTCAAAAAC | + |
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Preference number: 4 (lower is better) Translates to: LLPPRNNGTLRKVTVLLLICKEM*YGCVKN Trigger: GTTTTTGACACAGCCATAGCACATCTCTTTGCAGAT...CAACAAAAGCACAGTGACTTTCCTGAGAGTCCCGTTATTTCTAGGAGGTAGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CCA 90 bp | ATAGGACAGTTGTGGGTCTCGCCTCGGGAAGATGTACTGAATAAAACATCTATTCAAAGAGATGTGCTATaGCTGTGTCAAAAACAAGAC | + |
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Preference number: 4 (lower is better) Translates to: IGQLWVSPREDVLNKTSIQRDVL*LCQKQD Trigger: GTCTTGTTTTTGACACAGCCATAGCACATCTCTTTG...AATAGATGTTTTATTCAGTACATCTTCCCGAGGCGAGACCCACAACTGTCCTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS CCA 90 bp | CTGGGCGTTAGGGCGCCCCTGCACGTCGGGCAGCAGCTTAACTTCTaGCGGCATTGGTTACACACCAGGTGCCCGGCCTGGCACTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: LGVRAPLHVGQQLNF*RHWLHTRCPAWHCR Trigger: TCTGCAGTGCCAGGCCGGGCACCTGGTGTGTAACCAATGCCGCCAGAAGTTAAGCTGCTGCCCGACGTGCAGGGGCGCCCTAACGCCCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CAA 90 bp | CATGGATTTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTGAGGACGGACTGCTTGCTGCAGGGTTaGTTAGCGCTGGGGCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: HGFRVLVSMWCVQRLRTDCLLQG*LALGPV Trigger: CACCGGCCCCAGCGCTAACAAACCCTGCAGCAAGCA...GTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CAA 90 bp | CATGGATTTAGAGTTCTGGTCTCCATGTGGTGTGTGCAGAGGCTGAGGACGGACAGGGATCCCTGCCACTaGCAGGACGCACCAGGACAA | + |
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Preference number: 5 (lower is better) Translates to: HGFRVLVSMWCVQRLRTDRDPCH*QDAPGQ Trigger: TTGTCCTGGTGCGTCCTGCAAGTGGCAGGGATCCCT...GTCCGTCCTCAGCCTCTGCACACACCACATGGAGACCAGAACTCTAAATCCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS TCA 90 bp | AAAACAAGACAGTCACTGTTCATGATGGCTGCAGCCACGCCATCATaGATGGACCGAGGTGTGGCCTCCCAGGTCAGTCTCCTCCGGTTC | + |
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Preference number: 5 (lower is better) Translates to: KTRQSLFMMAAATPS*MDRGVASQVSLLRF Trigger: GAACCGGAGGAGACTGACCTGGGAGGCCACACCTCGGTCCATTCATGATGGCGTGGCTGCAGCCATCATGAACAGTGACTGTCTTGTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS GCA 90 bp | TGCTATGGCTGTGTCAAAAACAAGACAGTCACTGTTCATGATGGCTaGAGCCACGCCATCATGAATGGACCGAGGTGTGGCCTCCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: CYGCVKNKTVTVHDG*SHAIMNGPRCGLPG Trigger: ACCTGGGAGGCCACACCTCGGTCCATTCATGATGGCGTGGCTGCAGCCATCATGAACAGTGACTGTCTTGTTTTTGACACAGCCATAGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS TCA 90 bp | AGAGATGTGCTATGGCTGTGTCAAAAACAAGACAGTCACTGTTCATaGTGGCTGCAGCCACGCCATCATGAATGGACCGAGGTGTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: RDVLWLCQKQDSHCS*WLQPRHHEWTEVWP Trigger: AGGCCACACCTCGGTCCATTCATGATGGCGTGGCTGCAGCCATCATGAACAGTGACTGTCTTGTTTTTGACACAGCCATAGCACATCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CAA 90 bp | GTAGAGACCAACAGTGTCAGCAGAGGACGCCTTAAAGCACCTTTAGATCCTGGAAGGGTAGTGATACTCTaGTGGGCATGCATGAGATGG | + |
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Preference number: 5 (lower is better) Translates to: VETNSVSRGRLKAPLDPGRVVIL*WACMRW Trigger: CCATCTCATGCATGCCCACAAGAGTATCACTACCCT...TCCAGGATCTAAAGGTGCTTTAAGGCGTCCTCTGCTGACACTGTTGGTCTCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CAA 90 bp | GTAGAGACCAACAGTGTCAGCAGAGGACGCCTTAAAGCACCTTTAGATCCTGGAGCCTTCGTACTTCTCTaGCTTTTCAAGTACCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: VETNSVSRGRLKAPLDPGAFVLL*LFKYQH Trigger: ATGCTGGTACTTGAAAAGCAAGAGAAGTACGAAGGC...TCCAGGATCTAAAGGTGCTTTAAGGCGTCCTCTGCTGACACTGTTGGTCTCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CAA 90 bp | ATAGGACAGTTGTGGGTCTCGCCTCGGGAAGATGTACTGAATAAAACATCTATTGGCAAAGTTCTCAGCTaGCTTTCGGGTGCCAATGAG | + |
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Preference number: 5 (lower is better) Translates to: IGQLWVSPREDVLNKTSIGKVLS*LSGANE Trigger: CTCATTGGCACCCGAAAGCAAGCTGAGAACTTTGCC...AATAGATGTTTTATTCAGTACATCTTCCCGAGGCGAGACCCACAACTGTCCTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS-3UTR CAA 90 bp | ACCAACAGTGTCAGCAGAGGACGCCTTAAAGCACCTTTAGATCCTGGACCCTTGGTAGATATCGTGACATaGATTCCAAGGTTCCCATTA | + |
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Preference number: 5 (lower is better) Translates to: TNSVSRGRLKAPLDPGPLVDIVT*IPRFPL Trigger: TAATGGGAACCTTGGAATCAATGTCACGATATCTAC...CAAGGGTCCAGGATCTAAAGGTGCTTTAAGGCGTCCTCTGCTGACACTGTTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS GCA 90 bp | TATCGTGACATTGATTCCAAGGTTCCCATTATCTGCAAAGAGATGTaGTATGGCTGTGTCAAAAACAAGACAGTCACTGTTCATGATGGC | + |
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Preference number: 5 (lower is better) Translates to: YRDIDSKVPIICKEM*YGCVKNKTVTVHDG Trigger: GCCATCATGAACAGTGACTGTCTTGTTTTTGACACAGCCATAGCACATCTCTTTGCAGATAATGGGAACCTTGGAATCAATGTCACGATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS GCA 90 bp | ACAGCATGTAGATATCGTGACATTGATTCCAAGGTTCCCATTATCTaGAAAGAGATGTGCTATGGCTGTGTCAAAAACAAGACAGTCACT | + |
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Preference number: 5 (lower is better) Translates to: TACRYRDIDSKVPII*KEMCYGCVKNKTVT Trigger: AGTGACTGTCTTGTTTTTGACACAGCCATAGCACATCTCTTTGCAGATAATGGGAACCTTGGAATCAATGTCACGATATCTACATGCTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS CCA 72 bp | AGGGCGCCCCTGCACGTCGGGCAGCAGCTTAACTTCTaGCGGCATTGGTTACACACCAGGTGCCCGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: RAPLHVGQQLNF*RHWLHTRCPAW Trigger: CCAGGCCGGGCACCTGGTGTGTAACCAATGCCGCCAGAAGTTAAGCTGCTGCCCGACGTGCAGGGGCGCCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS CCA 72 bp | CTGCACGTCGGGCAGCAGCTTAACTTCTGGCGGCATTaGTTACACACCAGGTGCCCGGCCTGGCACTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: LHVGQQLNFWRH*LHTRCPAWHCR Trigger: TCTGCAGTGCCAGGCCGGGCACCTGGTGTGTAACCAATGCCGCCAGAAGTTAAGCTGCTGCCCGACGTGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS TCA 72 bp | CAGTCACTGTTCATGATGGCTGCAGCCACGCCATCATaGATGGACCGAGGTGTGGCCTCCCAGGTCAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: QSLFMMAAATPS*MDRGVASQVSL Trigger: GAGACTGACCTGGGAGGCCACACCTCGGTCCATTCATGATGGCGTGGCTGCAGCCATCATGAACAGTGACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS GCA 72 bp | TGCATGAGATGGGACATCACAGCTTCCAGGGATCCCTaGCACTTGCAGGACGCACCAGGACAAGGACAGGAA | + |
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Preference number: 6 (lower is better) Translates to: CMRWDITASRDP*HLQDAPGQGQE Trigger: TTCCTGTCCTTGTCCTGGTGCGTCCTGCAAGTGGCAGGGATCCCTGGAAGCTGTGATGTCCCATCTCATGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS GCA 72 bp | TGTGTCAAAAACAAGACAGTCACTGTTCATGATGGCTaGAGCCACGCCATCATGAATGGACCGAGGTGTGGC | + |
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Preference number: 6 (lower is better) Translates to: CVKNKTVTVHDG*SHAIMNGPRCG Trigger: GCCACACCTCGGTCCATTCATGATGGCGTGGCTGCAGCCATCATGAACAGTGACTGTCTTGTTTTTGACACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS CAA 72 bp | CCCATTCAACTCCAGTCTGTAGGCAAAGTTCTCAGCTaGCTTTCGGGTGCCAATGAGGAGGACGATGGCAAA | + |
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Preference number: 6 (lower is better) Translates to: PIQLQSVGKVLS*LSGANEEDDGK Trigger: TTTGCCATCGTCCTCCTCATTGGCACCCGAAAGCAAGCTGAGAACTTTGCCTACAGACTGGAGTTGAATGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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| CDS GCA 72 bp | ATTGATTCCAAGGTTCCCATTATCTGCAAAGAGATGTaGTATGGCTGTGTCAAAAACAAGACAGTCACTGTT | + |
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Preference number: 6 (lower is better) Translates to: IDSKVPIICKEM*YGCVKNKTVTV Trigger: AACAGTGACTGTCTTGTTTTTGACACAGCCATAGCACATCTCTTTGCAGATAATGGGAACCTTGGAATCAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070368.8 |
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