Pregenerated sensors for SIAH1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040749Ensembl transcript IDs: ENSMUST00000037928.9, ENSMUST00000071667.9, ENSMUST00000134272.2
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGTGGCAGGCAGATGGGTaGCTTATTCTCTGTGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: TRRWLVKGKPSTHVHACVWQADG*LILCEV Trigger: GACTTCACAGAGAATAAGCCACCCATCTGCCTGCCA...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CCA 90 bp | GCTATGACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCAGCGAATGGATCCCAATaGGCCCCGGCAGGTGGGACA | + |
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Preference number: 4 (lower is better) Translates to: AMTRRWLVKGKPSTHVHAANGSQ*APAGGT Trigger: TGTCCCACCTGCCGGGGCCCATTGGGATCCATTCGC...TGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGTCATAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGGCGAATGGATCCCAATaGGCCCCGGCAGGTGGGACA | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVANGSQ*APAGGT Trigger: TGTCCCACCTGCCGGGGCCCATTGGGATCCATTCGC...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR TCA 90 bp | GCTATGACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCAGTAATGGACTTGTGCTaGTGCATCAGGTGGGGCATG | + |
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Preference number: 4 (lower is better) Translates to: AMTRRWLVKGKPSTHVHAVMDLC*CIRWGM Trigger: CATGCCCCACCTGATGCATCAGCACAAGTCCATTAC...TGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGTCATAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGAAGGCAGGTACCCTCTaGGATGGTGGACACTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVKAGTL*DGGHFE Trigger: CTCAAAGTGTCCACCATCCCAGAGGGTACCTGCCTT...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CCA 90 bp | GCTATGACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCAAAGGCAGGTACCCTCTaGGATGGTGGACACTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: AMTRRWLVKGKPSTHVHAKAGTL*DGGHFE Trigger: CTCAAAGTGTCCACCATCCCAGAGGGTACCTGCCTT...TGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGTCATAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR TCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGGTTGCAATCCCCTCATaGATAGATCGAGGAGTCGCT | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVVAIPS*IDRGVA Trigger: AGCGACTCCTCGATCTATTCATGAGGGGATTGCAAC...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR GCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGGTTTGGGGCGACAGTTaGTACAAACAAGATGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVVWGDS*YKQDGH Trigger: GTGGCCATCTTGTTTGTAGCAACTGTCGCCCCAAAC...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR GCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGTCACACAGCTCCTCGTaGTCTGCCTTTTTGGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVSHSSS*SAFLVC Trigger: ACACACCAAAAAGGCAGAGCACGAGGAGCTGTGTGA...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR GCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGGCATCCAAGGAGCCTTaGCATTTACAGGAAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVASKEP*HLQEAP Trigger: TGGTGCTTCCTGTAAATGGCAAGGCTCCTTGGATGC...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR TCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGGTTAATCGGCGCCTATaGCCATTTAGCTCAAGTCGA | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVVNRRL*PFSSSR Trigger: TCGACTTGAGCTAAATGGTCATAGGCGCCGATTAAC...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR TCA 90 bp | GCTATGACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCAGTTAATCGGCGCCTATaGCCATTTAGCTCAAGTCGA | + |
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Preference number: 4 (lower is better) Translates to: AMTRRWLVKGKPSTHVHAVNRRL*PFSSSR Trigger: TCGACTTGAGCTAAATGGTCATAGGCGCCGATTAAC...TGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGTCATAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR GCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGCAAAAAGCTGTGCAATaGTGGTGTCAAACACTAGGC | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVQKAVQ*WCQTLG Trigger: GCCTAGTGTTTGACACCAGCATTGCACAGCTTTTTG...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR GCA 90 bp | GCTATGACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATTCTGCAAAAAGCTGTaGAATGCTGGTGTCAAACAC | + |
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Preference number: 4 (lower is better) Translates to: AMTRRWLVKGKPSTHVHAFCKKL*NAGVKH Trigger: GTGTTTGACACCAGCATTGCACAGCTTTTTGCAGAA...TGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGTCATAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR GCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGTTCTGCAAAAAGCTGTaGAATGCTGGTGTCAAACAC | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVFCKKL*NAGVKH Trigger: GTGTTTGACACCAGCATTGCACAGCTTTTTGCAGAA...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGAAAGCTGTGCAATGCTaGTGTCAAACACTAGGCAAT | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVKAVQC*CQTLGN Trigger: ATTGCCTAGTGTTTGACACCAGCATTGCACAGCTTT...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR GCA 90 bp | GCTATGACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCAATTCATAATGGCTGTTaGAATCCCCTCATGAATAGA | + |
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Preference number: 4 (lower is better) Translates to: AMTRRWLVKGKPSTHVHAIHNGC*NPLMNR Trigger: TCTATTCATGAGGGGATTGCAACAGCCATTATGAAT...TGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGTCATAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR GCA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGATTCATAATGGCTGTTaGAATCCCCTCATGAATAGA | + |
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Preference number: 4 (lower is better) Translates to: TRRWLVKGKPSTHVHACVIHNGC*NPLMNR Trigger: TCTATTCATGAGGGGATTGCAACAGCCATTATGAAT...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CAA 90 bp | GCTATGACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCAGGGATGGTGGACACTTaGAGGTGCCAGTGGATAATG | + |
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Preference number: 5 (lower is better) Translates to: AMTRRWLVKGKPSTHVHAGMVDT*RCQWIM Trigger: CATTATCCACTGGCACCTCAAAGTGTCCACCATCCC...TGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGTCATAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CAA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGAGTTTGGGGCGACAGTaGCTACAAACAAGATGGCCA | + |
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Preference number: 5 (lower is better) Translates to: TRRWLVKGKPSTHVHACVSLGRQ*LQTRWP Trigger: TGGCCATCTTGTTTGTAGCAACTGTCGCCCCAAACT...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CAA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGCATTGTTGGATGCAGTaGTGTCAGTCAAGGCAGGTA | + |
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Preference number: 5 (lower is better) Translates to: TRRWLVKGKPSTHVHACVHCWMQ*CQSRQV Trigger: TACCTGCCTTGACTGACACAACTGCATCCAACAATG...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CAA 90 bp | GCTATGACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCAAGACTCGCCAAGTCATaGTTGGATGCAGTTGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: AMTRRWLVKGKPSTHVHARLAKS*LDAVVS Trigger: TGACACAACTGCATCCAACAATGACTTGGCGAGTCT...TGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGTCATAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CAA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGGGACAACATGTAAGTTaGGGGCGACAGTTGCTACAA | + |
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Preference number: 5 (lower is better) Translates to: TRRWLVKGKPSTHVHACVGQHVS*GRQLLQ Trigger: TTGTAGCAACTGTCGCCCCAAACTTACATGTTGTCC...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CAA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGACAGCACCAGGAAGGTaGATGTCTGTAGCAAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: TRRWLVKGKPSTHVHACVTAPGR*MSVARK Trigger: TTTCCTTGCTACAGACATCAACCTTCCTGGTGCTGT...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CAA 90 bp | GCTATGACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCAGCGTGTTCCTATCAGTaGTACAATTGCAAAGAACTG | + |
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Preference number: 5 (lower is better) Translates to: AMTRRWLVKGKPSTHVHAACSYQ*YNCKEL Trigger: CAGTTCTTTGCAATTGTACAACTGATAGGAACACGC...TGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGTCATAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CAA 90 bp | GCTATGACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCAGGCAAAATTTTCAGCTaGTTTGCGTGTTCCTATCAG | + |
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Preference number: 5 (lower is better) Translates to: AMTRRWLVKGKPSTHVHAGKIFS*FACSYQ Trigger: CTGATAGGAACACGCAAACAAGCTGAAAATTTTGCC...TGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGTCATAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CAA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGGGCAAAATTTTCAGCTaGTTTGCGTGTTCCTATCAG | + |
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Preference number: 5 (lower is better) Translates to: TRRWLVKGKPSTHVHACVGKIFS*FACSYQ Trigger: CTGATAGGAACACGCAAACAAGCTGAAAATTTTGCC...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS-3UTR CAA 90 bp | ACACGTAGATGGCTTGTTAAAGGAAAACCAAGCACACACGTGCACGCATGTGTGAAATTTTCAGCTTGTTaGCGTGTTCCTATCAGTTGT | + |
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Preference number: 5 (lower is better) Translates to: TRRWLVKGKPSTHVHACVKFSAC*RVPISC Trigger: ACAACTGATAGGAACACGCAAACAAGCTGAAAATTT...CACACATGCGTGCACGTGTGTGCTTGGTTTTCCTTTAACAAGCCATCTACGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 |
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| CDS CAA 72 bp | AAGCAGACAGGACACTCAAAAAGACTCGCCAAGTCATaGTTGGATGCAGTTGTGTCAGTCAAGGCAGGTACC | + |
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Preference number: 6 (lower is better) Translates to: KQTGHSKRLAKS*LDAVVSVKAGT Trigger: GGTACCTGCCTTGACTGACACAACTGCATCCAACAATGACTTGGCGAGTCTTTTTGAGTGTCCTGTCTGCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000037928.9 ENSMUST00000071667.9 ENSMUST00000134272.2 |
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