Pregenerated sensors for SIAH1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036840Ensembl transcript IDs: ENSMUST00000045296.6
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGAGTTTACTCCCTAACCTACCCTTTCTAAGAGTCAGCCTGACCTaGCGTGTGGCTCCATGGGACAGTCACCGAGAGAGACAAGAGCAT | + |
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Preference number: 1 (lower is better) Translates to: QSLLPNLPFLRVSLT*RVAPWDSHRERQEH Trigger: ATGCTCTTGTCTCTCTCGGTGACTGTCCCATGGAGCCACACGTCAGGTCAGGCTGACTCTTAGAAAGGGTAGGTTAGGGAGTAAACTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| 3UTR TCA 90 bp | ACAGTCACCGAGAGAGACAAGAGCATCCTGCACTCACTTCAGCCTTaGCTGCTGCTCTGCTACCTTGCCTTTCTGGAATTCCTATTTTCA | + |
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Preference number: 1 (lower is better) Translates to: TVTERDKSILHSLQP*LLLCYLAFLEFLFS Trigger: TGAAAATAGGAATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGGATGCTCTTGTCTCTCTCGGTGACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| 3UTR-3UTR GCA 90 bp | CCTGACGTGTGGCTCCATGGGACAGTCACCGAGAGAGACAAGAGCATCCTGCACTTCAGCCTTGACTGCTaGTCTGCTACCTTGCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: PDVWLHGTVTERDKSILHFSLDC*SATLPF Trigger: GAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAA...GTGCAGGATGCTCTTGTCTCTCTCGGTGACTGTCCCATGGAGCCACACGTCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| 3UTR-3UTR CCA 90 bp | CCTGACGTGTGGCTCCATGGGACAGTCACCGAGAGAGACAAGAGCATCCTGCACGCTACCTTGCCTTTCTaGAATTCCTATTTTCACAAA | + |
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Preference number: 2 (lower is better) Translates to: PDVWLHGTVTERDKSILHATLPF*NSYFHK Trigger: TTTGTGAAAATAGGAATTCCAGAAAGGCAAGGTAGC...GTGCAGGATGCTCTTGTCTCTCTCGGTGACTGTCCCATGGAGCCACACGTCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| 3UTR-3UTR GCA 90 bp | ACGCAGATGGCTTGTCAGTTAAAAGAAAACCAACCACACACGTGCACGCATGCGTGGCAAGCAGATGGGTaGCTTATTCTCTGTGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: TQMACQLKENQPHTCTHAWQADG*LILCEV Trigger: GACTTCACAGAGAATAAGGCACCCATCTGCTTGCCA...CGCATGCGTGCACGTGTGTGGTTGGTTTTCTTTTAACTGACAAGCCATCTGCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| 3UTR GCA 72 bp | TCCATGGGACAGTCACCGAGAGAGACAAGAGCATCCTaGACTCACTTCAGCCTTGACTGCTGCTCTGCTACC | + |
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Preference number: 3 (lower is better) Translates to: SMGQSPRETRAS*THFSLDCCSAT Trigger: GGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGGATGCTCTTGTCTCTCTCGGTGACTGTCCCATGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| 3UTR-3UTR CAA 90 bp | CCTGACGTGTGGCTCCATGGGACAGTCACCGAGAGAGACAAGAGCATCCTGCACTGCTGCTCTGCTACCTaGCCTTTCTGGAATTCCTAT | + |
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Preference number: 3 (lower is better) Translates to: PDVWLHGTVTERDKSILHCCSAT*PFWNSY Trigger: ATAGGAATTCCAGAAAGGCAAGGTAGCAGAGCAGCA...GTGCAGGATGCTCTTGTCTCTCTCGGTGACTGTCCCATGGAGCCACACGTCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| 3UTR TCA 72 bp | GAGAGAGACAAGAGCATCCTGCACTCACTTCAGCCTTaGCTGCTGCTCTGCTACCTTGCCTTTCTGGAATTC | + |
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Preference number: 3 (lower is better) Translates to: ERDKSILHSLQP*LLLCYLAFLEF Trigger: GAATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGGATGCTCTTGTCTCTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| 3UTR GCA 72 bp | GAGACAAGAGCATCCTGCACTCACTTCAGCCTTGACTaGTGCTCTGCTACCTTGCCTTTCTGGAATTCCTAT | + |
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Preference number: 3 (lower is better) Translates to: ETRASCTHFSLD*CSATLPFWNSY Trigger: ATAGGAATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGGATGCTCTTGTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR CCA 90 bp | CCTGACGTGTGGCTCCATGGGACAGTCACCGAGAGAGACAAGAGCATCCTGCACGCGAATGGATCCCAATaGGCCCCGGCAAGTGGGACA | + |
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Preference number: 4 (lower is better) Translates to: PDVWLHGTVTERDKSILHANGSQ*APASGT Trigger: TGTCCCACTTGCCGGGGCCCATTGGGATCCATTCGC...GTGCAGGATGCTCTTGTCTCTCTCGGTGACTGTCCCATGGAGCCACACGTCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR TCA 90 bp | CCTGACGTGTGGCTCCATGGGACAGTCACCGAGAGAGACAAGAGCATCCTGCACGTCAATCGCCGCCTATaGCCATTTAGCTCAAGTCGA | + |
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Preference number: 4 (lower is better) Translates to: PDVWLHGTVTERDKSILHVNRRL*PFSSSR Trigger: TCGACTTGAGCTAAATGGTCATAGGCGGCGATTGAC...GTGCAGGATGCTCTTGTCTCTCTCGGTGACTGTCCCATGGAGCCACACGTCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR GCA 90 bp | CCTGCACTCACTTCAGCCTTGACTGCTGCTCTGCTACCTTGCCTTTCTGGAATTTGTTGGATGCAGTTGTaGCGGTCAAGGCAGGTACCC | + |
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Preference number: 4 (lower is better) Translates to: PALTSALTAALLPCLSGICWMQL*RSRQVP Trigger: GGGTACCTGCCTTGACCGGCACAACTGCATCCAACA...AATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR GCA 90 bp | CCTGCACTCACTTCAGCCTTGACTGCTGCTCTGCTACCTTGCCTTTCTGGAATTGCATCCAAGGAGCCTTaGCACTTACAGGAAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: PALTSALTAALLPCLSGIASKEP*HLQEAP Trigger: TGGTGCTTCCTGTAAGTGGCAAGGCTCCTTGGATGC...AATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR GCA 90 bp | ACGCAGATGGCTTGTCAGTTAAAAGAAAACCAACCACACACGTGCACGCATGCGTCACAGAGCTCCTCGTaGTCTGCCTTTTCGGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: TQMACQLKENQPHTCTHASQSSS*SAFSVC Trigger: ACACACCGAAAAGGCAGAGCACGAGGAGCTCTGTGA...CGCATGCGTGCACGTGTGTGGTTGGTTTTCTTTTAACTGACAAGCCATCTGCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR CCA 90 bp | CCTGCACTCACTTCAGCCTTGACTGCTGCTCTGCTACCTTGCCTTTCTGGAATTTCGCCAAGTCATTGTTaGATGCAGTTGTGCCGGTCA | + |
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Preference number: 4 (lower is better) Translates to: PALTSALTAALLPCLSGISPSHC*MQLCRS Trigger: TGACCGGCACAACTGCATCCAACAATGACTTGGCGA...AATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| 3UTR CAA 72 bp | CGAGAGAGACAAGAGCATCCTGCACTCACTTCAGCCTaGACTGCTGCTCTGCTACCTTGCCTTTCTGGAATT | + |
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Preference number: 4 (lower is better) Translates to: RERQEHPALTSA*TAALLPCLSGI Trigger: AATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGGATGCTCTTGTCTCTCTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR TCA 90 bp | ACGCAGATGGCTTGTCAGTTAAAAGAAAACCAACCACACACGTGCACGCATGCGGTTGCAATTCCCTCATaGATAGACCGAGGAGTCGCT | + |
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Preference number: 4 (lower is better) Translates to: TQMACQLKENQPHTCTHAVAIPS*IDRGVA Trigger: AGCGACTCCTCGGTCTATTCATGAGGGAATTGCAAC...CGCATGCGTGCACGTGTGTGGTTGGTTTTCTTTTAACTGACAAGCCATCTGCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR GCA 90 bp | ACGCAGATGGCTTGTCAGTTAAAAGAAAACCAACCACACACGTGCACGCATGCGCAAGTCATTGTTGGATaGAGTTGTGCCGGTCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: TQMACQLKENQPHTCTHAQVIVG*SCAGQG Trigger: GCCTTGACCGGCACAACTGCATCCAACAATGACTTG...CGCATGCGTGCACGTGTGTGGTTGGTTTTCTTTTAACTGACAAGCCATCTGCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR CCA 90 bp | CCTGCACTCACTTCAGCCTTGACTGCTGCTCTGCTACCTTGCCTTTCTGGAATTAAAGCTGTGCAATGCTaGTGTCAAACACTAGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: PALTSALTAALLPCLSGIKAVQC*CQTLGS Trigger: ACTGCCTAGTGTTTGACACCAGCATTGCACAGCTTT...AATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR GCA 90 bp | ACGCAGATGGCTTGTCAGTTAAAAGAAAACCAACCACACACGTGCACGCATGCGACTATATCTTCTCCTTaGAGGGTGGTAATGGACTTG | + |
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Preference number: 4 (lower is better) Translates to: TQMACQLKENQPHTCTHATISSP*RVVMDL Trigger: CAAGTCCATTACCACCCTGCAAGGAGAAGATATAGT...CGCATGCGTGCACGTGTGTGGTTGGTTTTCTTTTAACTGACAAGCCATCTGCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR CAA 90 bp | CCTGCACTCACTTCAGCCTTGACTGCTGCTCTGCTACCTTGCCTTTCTGGAATTGGGATGGTGGACACTTaGAGGTGCCAGTGGGTAATG | + |
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Preference number: 5 (lower is better) Translates to: PALTSALTAALLPCLSGIGMVDT*RCQWVM Trigger: CATTACCCACTGGCACCTCAAAGTGTCCACCATCCC...AATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR CAA 90 bp | CCTGCACTCACTTCAGCCTTGACTGCTGCTCTGCTACCTTGCCTTTCTGGAATTCTCGCCAAGTCATTGTaGGATGCAGTTGTGCCGGTC | + |
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Preference number: 5 (lower is better) Translates to: PALTSALTAALLPCLSGILAKSL*DAVVPV Trigger: GACCGGCACAACTGCATCCAACAATGACTTGGCGAG...AATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR CAA 90 bp | CCTGCACTCACTTCAGCCTTGACTGCTGCTCTGCTACCTTGCCTTTCTGGAATTCATTGTTGGATGCAGTaGTGCCGGTCAAGGCAGGTA | + |
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Preference number: 5 (lower is better) Translates to: PALTSALTAALLPCLSGIHCWMQ*CRSRQV Trigger: TACCTGCCTTGACCGGCACAACTGCATCCAACAATG...AATTCCAGAAAGGCAAGGTAGCAGAGCAGCAGTCAAGGCTGAAGTGAGTGCAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR CAA 90 bp | ACGCAGATGGCTTGTCAGTTAAAAGAAAACCAACCACACACGTGCACGCATGCGAGACTCGCCAAGTCATaGTTGGATGCAGTTGTGCCG | + |
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Preference number: 5 (lower is better) Translates to: TQMACQLKENQPHTCTHARLAKS*LDAVVP Trigger: CGGCACAACTGCATCCAACAATGACTTGGCGAGTCT...CGCATGCGTGCACGTGTGTGGTTGGTTTTCTTTTAACTGACAAGCCATCTGCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS-3UTR CAA 90 bp | AACAGCTTTTCTTTTTATTTACCTTCATGTCTAGCTTCTACCTACCAGGAAAGTAACTATATCTTCTCCTaGCAGGGTGGTAATGGACTT | + |
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Preference number: 5 (lower is better) Translates to: NSFSFYLPSCLASTYQESNYIFS*QGGNGL Trigger: AAGTCCATTACCACCCTGCAAGGAGAAGATATAGTT...ACTTTCCTGGTAGGTAGAAGCTAGACATGAAGGTAAATAAAAAGAAAAGCTGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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| CDS CAA 72 bp | AAGCAGACAGGACACTCAAAAAGACTCGCCAAGTCATaGTTGGATGCAGTTGTGCCGGTCAAGGCAGGTACC | + |
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Preference number: 6 (lower is better) Translates to: KQTGHSKRLAKS*LDAVVPVKAGT Trigger: GGTACCTGCCTTGACCGGCACAACTGCATCCAACAATGACTTGGCGAGTCTTTTTGAGTGTCCTGTCTGCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045296.6 |
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