Pregenerated sensors for SHOX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027833Ensembl transcript IDs: ENSMUST00000029422.14, ENSMUST00000162060.9, ENSMUST00000162098.9, ENSMUST00000162439.8, ENSMUST00000195261.2
Found 116 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTaGAGGATCGCGCCGCTTAGGAGGCTCCACCGACCGTGGCGCTGG | + |
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Preference number: 1 (lower is better) Translates to: ATVRSGCGRSRSRRA*RIAPLRRLHRPWRW Trigger: CCAGCGCCACGGTCGGTGGAGCCTCCTAAGCGGCGCGATCCTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR GCA 90 bp | CAGTCAGCGGGGAAGGGACAGGCCTGGGCGACGGTCAGAAGCGGGTaGGGGAGAAGCCGGTCGCGGAGGGCGTGCAGGATCGCGCCGCTT | + |
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Preference number: 1 (lower is better) Translates to: QSAGKGQAWATVRSG*GRSRSRRACRIAPL Trigger: AAGCGGCGCGATCCTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCTGTCCCTTCCCCGCTGACTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR CCA 90 bp | CTGGTGGCCCTCGTGGGATCCCGGGTCCAGCGCAGAGTCCCGCCCTaGGGATCCAGGGTGCAGAAAGAAAAGGCGGCAGTCAGCGGGGAA | + |
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Preference number: 1 (lower is better) Translates to: LVALVGSRVQRRVPP*GSRVQKEKAAVSGE Trigger: TTCCCCGCTGACTGCCGCCTTTTCTTTCTGCACCCTGGATCCCCAGGGCGGGACTCTGCGCTGGACCCGGGATCCCACGAGGGCCACCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR CCA 90 bp | GAACGAGTCCATCGCCGCAGCTGTGGCGCTATCCACTTCTCACTGTaGCCACACTCCTTTGTCCAGTCTCTATCCAGACTTCCCCAAACC | + |
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Preference number: 1 (lower is better) Translates to: ERVHRRSCGAIHFSL*PHSFVQSLSRLPQT Trigger: GGTTTGGGGAAGTCTGGATAGAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCACAGCTGCGGCGATGGACTCGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR GCA 90 bp | GAGAGTGGGAGGGGAGGGGACACCATCAATGGAATACTAGTAACATaGAAACCAGAATTGACTGTCAGCAGTCTGGACAGTTCTGCCATA | + |
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Preference number: 1 (lower is better) Translates to: ESGRGGDTINGILVT*KPELTVSSLDSSAI Trigger: TATGGCAGAACTGTCCAGACTGCTGACAGTCAATTCTGGTTTGCATGTTACTAGTATTCCATTGATGGTGTCCCCTCCCCTCCCACTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| 3UTR GCA 90 bp | GGGAATTCACGAAAAGGTAGAGAACAGATAAAGCGCCTATCACGATaGCCTGCAGTGTACCTTCGTGACTTCATTTGCTCTTCTCTTTTC | + |
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Preference number: 1 (lower is better) Translates to: GNSRKGREQIKRLSR*PAVYLRDFICSSLF Trigger: GAAAAGAGAAGAGCAAATGAAGTCACGAAGGTACACTGCAGGGCATCGTGATAGGCGCTTTATCTGTTCTCTACCTTTTCGTGAATTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| 3UTR-3UTR GCA 90 bp | CAGGAGCCCCTGGGCTGGTGGCCCTCGTGGGATCCCGGGTCCAGCGCAGAGTCCACGGTCAGAAGCGGGTaGGGGAGAAGCCGGTCGCGG | + |
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Preference number: 2 (lower is better) Translates to: QEPLGWWPSWDPGSSAESTVRSG*GRSRSR Trigger: CCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGT...GGACTCTGCGCTGGACCCGGGATCCCACGAGGGCCACCAGCCCAGGGGCTCCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR-3UTR CCA 90 bp | TCCCCAAACCCGCTCCTACAAAGCCGAATTTTAGTCCCAAGGGCGGGTGGGCAGGAGCCCCTGGGCTGGTaGCCCTCGTGGGATCCCGGG | + |
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Preference number: 2 (lower is better) Translates to: SPNPLLQSRILVPRAGGQEPLGW*PSWDPG Trigger: CCCGGGATCCCACGAGGGCCACCAGCCCAGGGGCTC...CTGCCCACCCGCCCTTGGGACTAAAATTCGGCTTTGTAGGAGCGGGTTTGGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGCTGTGGCGCTATCCACTTCTCACTGTGGCCACACTCCTTTGTCCAGTCTCGGCTGGTGGCCCTCGTaGGATCCCGGGTCCAGCGCA | + |
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Preference number: 2 (lower is better) Translates to: AAVALSTSHCGHTPLSSLGWWPS*DPGSSA Trigger: TGCGCTGGACCCGGGATCCCACGAGGGCCACCAGCC...GAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCACAGCTGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR-3UTR CCA 90 bp | CACTCCTTTGTCCAGTCTCTATCCAGACTTCCCCAAACCCGCTCCTACAAAGCCGGCTGGTGGCCCTCGTaGGATCCCGGGTCCAGCGCA | + |
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Preference number: 2 (lower is better) Translates to: HSFVQSLSRLPQTRSYKAGWWPS*DPGSSA Trigger: TGCGCTGGACCCGGGATCCCACGAGGGCCACCAGCC...GGCTTTGTAGGAGCGGGTTTGGGGAAGTCTGGATAGAGACTGGACAAAGGAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR-3UTR CCA 90 bp | GTGGCGCTATCCACTTCTCACTGTGGCCACACTCCTTTGTCCAGTCTCTATCCACAGGAGCCCCTGGGCTaGTGGCCCTCGTGGGATCCC | + |
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Preference number: 2 (lower is better) Translates to: VALSTSHCGHTPLSSLYPQEPLG*WPSWDP Trigger: GGGATCCCACGAGGGCCACCAGCCCAGGGGCTCCTG...TGGATAGAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR-3UTR GCA 90 bp | TGGCGCTATCCACTTCTCACTGTGGCCACACTCCTTTGTCCAGTCTCTATCCAGACGGTCAGAAGCGGGTaGGGGAGAAGCCGGTCGCGG | + |
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Preference number: 2 (lower is better) Translates to: WRYPLLTVATLLCPVSIQTVRSG*GRSRSR Trigger: CCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGT...CTGGATAGAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR-3UTR CCA 90 bp | CTTTGTCCAGTCTCTATCCAGACTTCCCCAAACCCGCTCCTACAAAGCCGAATTGAGCCCCTGGGCTGGTaGCCCTCGTGGGATCCCGGG | + |
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Preference number: 2 (lower is better) Translates to: LCPVSIQTSPNPLLQSRIEPLGW*PSWDPG Trigger: CCCGGGATCCCACGAGGGCCACCAGCCCAGGGGCTC...AATTCGGCTTTGTAGGAGCGGGTTTGGGGAAGTCTGGATAGAGACTGGACAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR-3UTR CCA 90 bp | CGTGAGAGTGGGAGGGGAGGGGACACCATCAATGGAATACTAGTAACATGCAAAAGTCCCAAGGGCGGGTaGGCAGGAGCCCCTGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: RESGRGGDTINGILVTCKSPKGG*AGAPGL Trigger: CAGCCCAGGGGCTCCTGCCCACCCGCCCTTGGGACT...TTTGCATGTTACTAGTATTCCATTGATGGTGTCCCCTCCCCTCCCACTCTCACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| 3UTR CAA 90 bp | GCCGCAGCTGTGGCGCTATCCACTTCTCACTGTGGCCACACTCCTTaGTCCAGTCTCTATCCAGACTTCCCCAAACCCGCTCCTACAAAG | + |
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Preference number: 2 (lower is better) Translates to: AAAVALSTSHCGHTP*SSLYPDFPKPAPTK Trigger: CTTTGTAGGAGCGGGTTTGGGGAAGTCTGGATAGAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCACAGCTGCGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR-3UTR GCA 90 bp | GCTGTGGCGCTATCCACTTCTCACTGTGGCCACACTCCTTTGTCCAGTCTCTATCCTGGGGATCCAGGGTaGAGAAAGAAAAGGCGGCAG | + |
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Preference number: 2 (lower is better) Translates to: AVALSTSHCGHTPLSSLYPGDPG*RKKRRQ Trigger: CTGCCGCCTTTTCTTTCTGCACCCTGGATCCCCAGG...ATAGAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR-3UTR GCA 90 bp | AATCCCTCCCTCCCCCTTTCTCTCAAGATTCATCCAGGTTATTTTTCCGTATTTACGGTCAGAAGCGGGTaGGGGAGAAGCCGGTCGCGG | + |
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Preference number: 2 (lower is better) Translates to: NPSLPLSLKIHPGYFSVFTVRSG*GRSRSR Trigger: CCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGT...AAATACGGAAAAATAACCTGGATGAATCTTGAGAGAAAGGGGGAGGGAGGGATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 |
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| 3UTR-3UTR GCA 90 bp | TTGCTGTTAGCAAGATTTTATTCCTATGAACGAGTCCATCGCCGCAGCTGTGGCCCTGGGGATCCAGGGTaGAGAAAGAAAAGGCGGCAG | + |
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Preference number: 2 (lower is better) Translates to: LLLARFYSYERVHRRSCGPGDPG*RKKRRQ Trigger: CTGCCGCCTTTTCTTTCTGCACCCTGGATCCCCAGG...GCCACAGCTGCGGCGATGGACTCGTTCATAGGAATAAAATCTTGCTAACAGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR-3UTR GCA 90 bp | GGAATAAAGCATTGTCCTCAAATAGGACTTAAACTAGCAAGAGGGAATTCACGAAAGCGCCTATCACGATaGCCTGCAGTGTACCTTCGT | + |
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Preference number: 2 (lower is better) Translates to: GIKHCPQIGLKLARGNSRKRLSR*PAVYLR Trigger: ACGAAGGTACACTGCAGGGCATCGTGATAGGCGCTT...TCGTGAATTCCCTCTTGCTAGTTTAAGTCCTATTTGAGGACAATGCTTTATTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| 3UTR-3UTR TCA 90 bp | AGAAGAGCTTTTCCTCTTTCATGTAAATTAAAGGGGGTTCTAAAGAGGCTTGCTTGTCTCCTATTAAAGTaGACTTCGCAGAAAAAGGTC | + |
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Preference number: 2 (lower is better) Translates to: RRAFPLSCKLKGVLKRLACLLLK*TSQKKV Trigger: GACCTTTTTCTGCGAAGTTCACTTTAATAGGAGACA...AGCAAGCCTCTTTAGAACCCCCTTTAATTTACATGAAAGAGGAAAAGCTCTTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| 3UTR GCA 72 bp | AGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTaGAGGATCGCGCCGCTTAGGAGGCTCCACCGACCG | + |
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Preference number: 3 (lower is better) Translates to: RSGCGRSRSRRA*RIAPLRRLHRP Trigger: CGGTCGGTGGAGCCTCCTAAGCGGCGCGATCCTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR GCA 72 bp | GGGAAGGGACAGGCCTGGGCGACGGTCAGAAGCGGGTaGGGGAGAAGCCGGTCGCGGAGGGCGTGCAGGATC | + |
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Preference number: 3 (lower is better) Translates to: GKGQAWATVRSG*GRSRSRRACRI Trigger: GATCCTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCTGTCCCTTCCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR CCA 72 bp | AAGAAAAGGCGGCAGTCAGCGGGGAAGGGACAGGCCTaGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGG | + |
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Preference number: 3 (lower is better) Translates to: KKRRQSAGKGQA*ATVRSGCGRSR Trigger: CCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCTGTCCCTTCCCCGCTGACTGCCGCCTTTTCTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR CCA 72 bp | CTCGTGGGATCCCGGGTCCAGCGCAGAGTCCCGCCCTaGGGATCCAGGGTGCAGAAAGAAAAGGCGGCAGTC | + |
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Preference number: 3 (lower is better) Translates to: LVGSRVQRRVPP*GSRVQKEKAAV Trigger: GACTGCCGCCTTTTCTTTCTGCACCCTGGATCCCCAGGGCGGGACTCTGCGCTGGACCCGGGATCCCACGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR CCA 72 bp | CATCGCCGCAGCTGTGGCGCTATCCACTTCTCACTGTaGCCACACTCCTTTGTCCAGTCTCTATCCAGACTT | + |
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Preference number: 3 (lower is better) Translates to: HRRSCGAIHFSL*PHSFVQSLSRL Trigger: AAGTCTGGATAGAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCACAGCTGCGGCGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR GCA 72 bp | CGAAAAGGTAGAGAACAGATAAAGCGCCTATCACGATaGCCTGCAGTGTACCTTCGTGACTTCATTTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: RKGREQIKRLSR*PAVYLRDFICS Trigger: AGAGCAAATGAAGTCACGAAGGTACACTGCAGGGCATCGTGATAGGCGCTTTATCTGTTCTCTACCTTTTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| 3UTR TCA 72 bp | TTTTGCTCATTTGCTGTTAGCAAGATTTTATTCCTATaGACGAGTCCATCGCCGCAGCTGTGGCGCTATCCA | + |
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Preference number: 3 (lower is better) Translates to: FCSFAVSKILFL*TSPSPQLWRYP Trigger: TGGATAGCGCCACAGCTGCGGCGATGGACTCGTTCATAGGAATAAAATCTTGCTAACAGCAAATGAGCAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| 3UTR TCA 72 bp | AGGCCCGCCTCTCTTATCAAATGTCTCCTATTAAAGTaGACTTCGCAGAAAAAGGTCAGCTTCAAAACCTGT | + |
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Preference number: 3 (lower is better) Translates to: RPASLIKCLLLK*TSQKKVSFKTC Trigger: ACAGGTTTTGAAGCTGACCTTTTTCTGCGAAGTTCACTTTAATAGGAGACATTTGATAAGAGAGGCGGGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 |
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| 3UTR CCA 72 bp | TTGCCCCTTGGGATCAAAGGCCGGACAAATTATATATaGATTCACATCAATTTCCAGACGCTTTTCATACTG | + |
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Preference number: 3 (lower is better) Translates to: LPLGIKGRTNYI*IHINFQTLFIL Trigger: CAGTATGAAAAGCGTCTGGAAATTGATGTGAATCCATATATAATTTGTCCGGCCTTTGATCCCAAGGGGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| 3UTR-3UTR CAA 90 bp | AGAAGAGCTTTTCCTCTTTCATGTAAATTAAAGGGGGTTCTAAAGAGGCTTGCTCCTCTTCCTTCTGTTTaGTTTTCTTGGACCATTAAA | + |
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Preference number: 3 (lower is better) Translates to: RRAFPLSCKLKGVLKRLAPLPSV*FSWTIK Trigger: TTTAATGGTCCAAGAAAACAAAACAGAAGGAAGAGG...AGCAAGCCTCTTTAGAACCCCCTTTAATTTACATGAAAGAGGAAAAGCTCTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS-3UTR GCA 90 bp | GCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGCGCGTGCGCGGCCAGGTaGGGATGCAGGTGGTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: AWATVRSGCGRSRSRRACACAAR*GCRWWC Trigger: GCACCACCACCTGCATCCGCACCTGGCCGCGCACGC...GCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | CTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGCAGAGTCCGCGGCCAGCGTaGCCAGCGGCAGTCCGAAGG | + |
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Preference number: 4 (lower is better) Translates to: LGDGQKRVREKPVAEGVQSPRPA*PAAVRR Trigger: CCTTCGGACTGCCGCTGGCCACGCTGGCCGCGGACT...CTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | CTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGCAGTGGAGTTCTTGCTGGTaGTCTTGGCGGCGGCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LGDGQKRVREKPVAEGVQWSSCW*SWRRRQ Trigger: CTGCCGCCGCCGCCAAGACCACCAGCAAGAACTCCA...CTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | GGTCGCGGAGGGCGTGCAGGATCGCGCCGCTTAGGAGGCTCCACCGACCGTGGCTGGAGTTCTTGCTGGTaGTCTTGGCGGCGGCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: GRGGRAGSRRLGGSTDRGWSSCW*SWRRRQ Trigger: CTGCCGCCGCCGCCAAGACCACCAGCAAGAACTCCA...GCCACGGTCGGTGGAGCCTCCTAAGCGGCGCGATCCTGCACGCCCTCCGCGACC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | CAGGAGCCCCTGGGCTGGTGGCCCTCGTGGGATCCCGGGTCCAGCGCAGAGTCCTGCTGGAGTTCTTGCTaGTGGTCTTGGCGGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: QEPLGWWPSWDPGSSAESCWSSC*WSWRRR Trigger: CCGCCGCCGCCAAGACCACCAGCAAGAACTCCAGCA...GGACTCTGCGCTGGACCCGGGATCCCACGAGGGCCACCAGCCCAGGGGCTCCTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | GGTCGCGGAGGGCGTGCAGGATCGCGCCGCTTAGGAGGCTCCACCGACCGTGGCCGATGCTGGAGTTCTTaGTGGTGGTCTTGGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: GRGGRAGSRRLGGSTDRGRCWSS*WWSWRR Trigger: CCGCCGCCAAGACCACCAGCAAGAACTCCAGCATCG...GCCACGGTCGGTGGAGCCTCCTAAGCGGCGCGATCCTGCACGCCCTCCGCGACC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | CGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGCAGGATCGCGATGCTGGAGTTCTTaGTGGTGGTCTTGGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: RRSEAGAGEAGRGGRAGSRCWSS*WWSWRR Trigger: CCGCCGCCAAGACCACCAGCAAGAACTCCAGCATCG...CGATCCTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | AGGCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTCCCAGGGCGGCCGCGTaGTTTTTAGCTTTCAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: RPGRRSEAGAGEAGRGGRPRAAA*FLAFSL Trigger: CAGACTGAAAGCTAAAAAGCACGCGGCCGCCCTGGG...ACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | CAGTCAGCGGGGAAGGGACAGGCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGATGGAGTTCTTGCTGGTaGTCTTGGCGGCGGCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: QSAGKGQAWATVRSGCGRWSSCW*SWRRRQ Trigger: CTGCCGCCGCCGCCAAGACCACCAGCAAGAACTCCA...TCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCTGTCCCTTCCCCGCTGACTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR TCA 90 bp | GCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGCGACTTCGCCTCTGCTTaGTTTTGGTCTGGCCTTCGT | + |
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Preference number: 4 (lower is better) Translates to: AWATVRSGCGRSRSRRACDFASA*FWSGLR Trigger: ACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTC...GCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | GGATCCAGGGTGCAGAAAGAAAAGGCGGCAGTCAGCGGGGAAGGGACAGGCCTGAGTCCGCGGCCAGCGTaGCCAGCGGCAGTCCGAAGG | + |
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Preference number: 4 (lower is better) Translates to: GSRVQKEKAAVSGEGTGLSPRPA*PAAVRR Trigger: CCTTCGGACTGCCGCTGGCCACGCTGGCCGCGGACT...CAGGCCTGTCCCTTCCCCGCTGACTGCCGCCTTTTCTTTCTGCACCCTGGATCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | AGGGACAGGCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: RDRPGRRSEAGAGEAGRGVRLRL*LILVWP Trigger: AGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGAC...TCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCTGTCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | TCCCCAAACCCGCTCCTACAAAGCCGAATTTTAGTCCCAAGGGCGGGTGGGCAGGCGTGCGCGGCCAGGTaGGGATGCAGGTGGTGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SPNPLLQSRILVPRAGGQACAAR*GCRWWC Trigger: GCACCACCACCTGCATCCGCACCTGGCCGCGCACGC...CTGCCCACCCGCCCTTGGGACTAAAATTCGGCTTTGTAGGAGCGGGTTTGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | AGGCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTTGCTTGATTTTGGTCTaGCCTTCGTCCTCCATCCCT | + |
|
Preference number: 4 (lower is better) Translates to: RPGRRSEAGAGEAGRGGRCLILV*PSSSIP Trigger: AGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCA...ACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS-3UTR GCA 90 bp | CTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGCAGACAAGGGCGTCACGTTaGAATGACTATCCTGCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: LGDGQKRVREKPVAEGVQTRASR*NDYPAE Trigger: TTCAGCAGGATAGTCATTGCAACGTGACGCCCTTGT...CTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029422.14 |
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| CDS-3UTR CCA 90 bp | CGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGCAGGATCGGCGCATGAAAGCGTCTaGATAGTGGGTCTCATCGAA | + |
|
Preference number: 4 (lower is better) Translates to: RRSEAGAGEAGRGGRAGSAHESV*IVGLIE Trigger: TTCGATGAGACCCACTATCCAGACGCTTTCATGCGC...CGATCCTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | AGGCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTCTACAAGCTTCAAACTaGCTAGCGGCTCCTATAAGG | + |
|
Preference number: 4 (lower is better) Translates to: RPGRRSEAGAGEAGRGGRLQASN*LAAPIR Trigger: CCTTATAGGAGCCGCTAGCCAGTTTGAAGCTTGTAG...ACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | CCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGCACTACAAGCTTCAAACTaGCTAGCGGCTCCTATAAGG | + |
|
Preference number: 4 (lower is better) Translates to: PGRRSEAGAGEAGRGGRALQASN*LAAPIR Trigger: CCTTATAGGAGCCGCTAGCCAGTTTGAAGCTTGTAG...TGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | GGATCCAGGGTGCAGAAAGAAAAGGCGGCAGTCAGCGGGGAAGGGACAGGCCTGTGCTGGAGTTCTTGCTaGTGGTCTTGGCGGCGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: GSRVQKEKAAVSGEGTGLCWSSC*WSWRRR Trigger: CCGCCGCCGCCAAGACCACCAGCAAGAACTCCAGCA...CAGGCCTGTCCCTTCCCCGCTGACTGCCGCCTTTTCTTTCTGCACCCTGGATCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR TCA 90 bp | AAAAGGCGGCAGTCAGCGGGGAAGGGACAGGCCTGGGCGACGGTCAGAAGCGGGGACTTCGCCTCTGCTTaGTTTTGGTCTGGCCTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: KRRQSAGKGQAWATVRSGDFASA*FWSGLR Trigger: ACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTC...CCCGCTTCTGACCGTCGCCCAGGCCTGTCCCTTCCCCGCTGACTGCCGCCTTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | GCAGAAAGAAAAGGCGGCAGTCAGCGGGGAAGGGACAGGCCTGGGCGACGGTCAGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: AERKGGSQRGRDRPGRRSVRLRL*LILVWP Trigger: AGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGAC...TGACCGTCGCCCAGGCCTGTCCCTTCCCCGCTGACTGCCGCCTTTTCTTTCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | AAACCCGCTCCTACAAAGCCGAATTTTAGTCCCAAGGGCGGGTGGGCAGGAGCCCGATGCTGGAGTTCTTaGTGGTGGTCTTGGCGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: KPAPTKPNFSPKGGWAGARCWSS*WWSWRR Trigger: CCGCCGCCAAGACCACCAGCAAGAACTCCAGCATCG...GGCTCCTGCCCACCCGCCCTTGGGACTAAAATTCGGCTTTGTAGGAGCGGGTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | GACTTCCCCAAACCCGCTCCTACAAAGCCGAATTTTAGTCCCAAGGGCGGGTGGTGGAGTTCTTGCTGGTaGTCTTGGCGGCGGCGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: DFPKPAPTKPNFSPKGGWWSSCW*SWRRRQ Trigger: CTGCCGCCGCCGCCAAGACCACCAGCAAGAACTCCA...CCACCCGCCCTTGGGACTAAAATTCGGCTTTGTAGGAGCGGGTTTGGGGAAGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | TTGCTGTTAGCAAGATTTTATTCCTATGAACGAGTCCATCGCCGCAGCTGTGGCGCGTGCGCGGCCAGGTaGGGATGCAGGTGGTGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: LLLARFYSYERVHRRSCGACAAR*GCRWWC Trigger: GCACCACCACCTGCATCCGCACCTGGCCGCGCACGC...GCCACAGCTGCGGCGATGGACTCGTTCATAGGAATAAAATCTTGCTAACAGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | GACTTCCCCAAACCCGCTCCTACAAAGCCGAATTTTAGTCCCAAGGGCGGGTGGCCCAGGGCGGCCGCGTaGTTTTTAGCTTTCAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: DFPKPAPTKPNFSPKGGWPRAAA*FLAFSL Trigger: CAGACTGAAAGCTAAAAAGCACGCGGCCGCCCTGGG...CCACCCGCCCTTGGGACTAAAATTCGGCTTTGTAGGAGCGGGTTTGGGGAAGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | TTGCTGTTAGCAAGATTTTATTCCTATGAACGAGTCCATCGCCGCAGCTGTGGCAGTCCGCGGCCAGCGTaGCCAGCGGCAGTCCGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: LLLARFYSYERVHRRSCGSPRPA*PAAVRR Trigger: CCTTCGGACTGCCGCTGGCCACGCTGGCCGCGGACT...GCCACAGCTGCGGCGATGGACTCGTTCATAGGAATAAAATCTTGCTAACAGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | CACTCCTTTGTCCAGTCTCTATCCAGACTTCCCCAAACCCGCTCCTACAAAGCCCGATGCTGGAGTTCTTaGTGGTGGTCTTGGCGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: HSFVQSLSRLPQTRSYKARCWSS*WWSWRR Trigger: CCGCCGCCAAGACCACCAGCAAGAACTCCAGCATCG...GGCTTTGTAGGAGCGGGTTTGGGGAAGTCTGGATAGAGACTGGACAAAGGAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | AAACCCGCTCCTACAAAGCCGAATTTTAGTCCCAAGGGCGGGTGGGCAGGAGCCGCGCATGAAAGCGTCTaGATAGTGGGTCTCATCGAA | + |
|
Preference number: 4 (lower is better) Translates to: KPAPTKPNFSPKGGWAGAAHESV*IVGLIE Trigger: TTCGATGAGACCCACTATCCAGACGCTTTCATGCGC...GGCTCCTGCCCACCCGCCCTTGGGACTAAAATTCGGCTTTGTAGGAGCGGGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | CTTTGTCCAGTCTCTATCCAGACTTCCCCAAACCCGCTCCTACAAAGCCGAATTTGCTGGAGTTCTTGCTaGTGGTCTTGGCGGCGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: LCPVSIQTSPNPLLQSRICWSSC*WSWRRR Trigger: CCGCCGCCGCCAAGACCACCAGCAAGAACTCCAGCA...AATTCGGCTTTGTAGGAGCGGGTTTGGGGAAGTCTGGATAGAGACTGGACAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | GCAGAAAGAAAAGGCGGCAGTCAGCGGGGAAGGGACAGGCCTGGGCGACGGTCATACGTTGACATAGGGTaGAACTCTACAAGCTTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: AERKGGSQRGRDRPGRRSYVDIG*NSTSFK Trigger: TTTGAAGCTTGTAGAGTTGCACCCTATGTCAACGTA...TGACCGTCGCCCAGGCCTGTCCCTTCCCCGCTGACTGCCGCCTTTTCTTTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | TTTGCTCATTTGCTGTTAGCAAGATTTTATTCCTATGAACGAGTCCATCGCCGCAGTCCGCGGCCAGCGTaGCCAGCGGCAGTCCGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: FAHLLLARFYSYERVHRRSPRPA*PAAVRR Trigger: CCTTCGGACTGCCGCTGGCCACGCTGGCCGCGGACT...GCGGCGATGGACTCGTTCATAGGAATAAAATCTTGCTAACAGCAAATGAGCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | TTGCTGTTAGCAAGATTTTATTCCTATGAACGAGTCCATCGCCGCAGCTGTGGCTGCTGGAGTTCTTGCTaGTGGTCTTGGCGGCGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: LLLARFYSYERVHRRSCGCWSSC*WSWRRR Trigger: CCGCCGCCGCCAAGACCACCAGCAAGAACTCCAGCA...GCCACAGCTGCGGCGATGGACTCGTTCATAGGAATAAAATCTTGCTAACAGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | GCAGCTGTGGCGCTATCCACTTCTCACTGTGGCCACACTCCTTTGTCCAGTCTCCTACAAGCTTCAAACTaGCTAGCGGCTCCTATAAGG | + |
|
Preference number: 4 (lower is better) Translates to: AAVALSTSHCGHTPLSSLLQASN*LAAPIR Trigger: CCTTATAGGAGCCGCTAGCCAGTTTGAAGCTTGTAG...GAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCACAGCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CCA 90 bp | CTTTGTCCAGTCTCTATCCAGACTTCCCCAAACCCGCTCCTACAAAGCCGAATTTGCTTGATTTTGGTCTaGCCTTCGTCCTCCATCCCT | + |
|
Preference number: 4 (lower is better) Translates to: LCPVSIQTSPNPLLQSRICLILV*PSSSIP Trigger: AGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCA...AATTCGGCTTTGTAGGAGCGGGTTTGGGGAAGTCTGGATAGAGACTGGACAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS-3UTR TCA 90 bp | TTTGCTCATTTGCTGTTAGCAAGATTTTATTCCTATGAACGAGTCCATCGCCGCGACTTCGCCTCTGCTTaGTTTTGGTCTGGCCTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: FAHLLLARFYSYERVHRRDFASA*FWSGLR Trigger: ACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTC...GCGGCGATGGACTCGTTCATAGGAATAAAATCTTGCTAACAGCAAATGAGCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR TCA 90 bp | TTGCTGTTAGCAAGATTTTATTCCTATGAACGAGTCCATCGCCGCAGCTGTGGCTTAAAGCACCTACGTTaGCATAGGGTGCAACTCTAC | + |
|
Preference number: 4 (lower is better) Translates to: LLLARFYSYERVHRRSCGLKHLR*HRVQLY Trigger: GTAGAGTTGCACCCTATGTCAACGTAGGTGCTTTAA...GCCACAGCTGCGGCGATGGACTCGTTCATAGGAATAAAATCTTGCTAACAGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR GCA 90 bp | TCCCTCCCTCCCCCTTTCTCTCAAGATTCATCCAGGTTATTTTTCCGTATTTTTGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: SLPPPFSQDSSRLFFRIFVRLRL*LILVWP Trigger: AGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGAC...AAAAATACGGAAAAATAACCTGGATGAATCTTGAGAGAAAGGGGGAGGGAGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 3 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 |
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| CDS-3UTR GCA 90 bp | GGAATAAAGCATTGTCCTCAAATAGGACTTAAACTAGCAAGAGGGAATTCACGACCCAGGGCGGCCGCGTaGTTTTTAGCTTTCAGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: GIKHCPQIGLKLARGNSRPRAAA*FLAFSL Trigger: CAGACTGAAAGCTAAAAAGCACGCGGCCGCCCTGGG...TCGTGAATTCCCTCTTGCTAGTTTAAGTCCTATTTGAGGACAATGCTTTATTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS-3UTR TCA 90 bp | TGGGATCAAAGGCCGGACAAATTATATATGGATTCACATCAATTTCCAGACGCTGACTTCGCCTCTGCTTaGTTTTGGTCTGGCCTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: WDQRPDKLYMDSHQFPDADFASA*FWSGLR Trigger: ACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTC...AGCGTCTGGAAATTGATGTGAATCCATATATAATTTGTCCGGCCTTTGATCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS-3UTR CCA 90 bp | AATCCCTCCCTCCCCCTTTCTCTCAAGATTCATCCAGGTTATTTTTCCGTATTTGCGCATGAAAGCGTCTaGATAGTGGGTCTCATCGAA | + |
|
Preference number: 4 (lower is better) Translates to: NPSLPLSLKIHPGYFSVFAHESV*IVGLIE Trigger: TTCGATGAGACCCACTATCCAGACGCTTTCATGCGC...AAATACGGAAAAATAACCTGGATGAATCTTGAGAGAAAGGGGGAGGGAGGGATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 |
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| CDS-3UTR GCA 90 bp | AGAAGAGCTTTTCCTCTTTCATGTAAATTAAAGGGGGTTCTAAAGAGGCTTGCTGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: RRAFPLSCKLKGVLKRLAVRLRL*LILVWP Trigger: AGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGAC...AGCAAGCCTCTTTAGAACCCCCTTTAATTTACATGAAAGAGGAAAAGCTCTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS-3UTR CCA 90 bp | TCCCTCCCTCCCCCTTTCTCTCAAGATTCATCCAGGTTATTTTTCCGTATTTTTCTACAAGCTTCAAACTaGCTAGCGGCTCCTATAAGG | + |
|
Preference number: 4 (lower is better) Translates to: SLPPPFSQDSSRLFFRIFLQASN*LAAPIR Trigger: CCTTATAGGAGCCGCTAGCCAGTTTGAAGCTTGTAG...AAAAATACGGAAAAATAACCTGGATGAATCTTGAGAGAAAGGGGGAGGGAGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 |
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| CDS GCA 90 bp | GTCCAGCTCCCGGACGGGAGAGCGCCCTCCTCCAGCTCCTCCGCCTaGTCCTCCTCCTCCAGCACCTCCTCCGCCTCCTCCGCCTCCGCC | + |
|
Preference number: 5 (lower is better) Translates to: VQLPDGRAPSSSSSA*SSSSSTSSASSASA Trigger: GGCGGAGGCGGAGGAGGCGGAGGAGGTGCTGGAGGAGGAGGAGCAGGCGGAGGAGCTGGAGGAGGGCGCTCTCCCGTCCGGGAGCTGGAC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029422.14 |
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| CDS GCA 90 bp | TCAGTTCAGGGGACACCTCCGTCAGCCGCGGGCTGCCGGGCTCCCTaGTCCGCTCCGCGGCTCCCATGTCCAGCTCCCGGACGGGAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: SVQGTPPSAAGCRAP*SAPRLPCPAPGRES Trigger: GCTCTCCCGTCCGGGAGCTGGACATGGGAGCCGCGGAGCGGAGCAGGGAGCCCGGCAGCCCGCGGCTGACGGAGGTGTCCCCTGAACTGA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS-3UTR CAA 90 bp | GCAGAAAGAAAAGGCGGCAGTCAGCGGGGAAGGGACAGGCCTGGGCGACGGTCAACGCAACCGGGCTCTTaGGCCCCGCGCAGCGGCCCG | + |
|
Preference number: 5 (lower is better) Translates to: AERKGGSQRGRDRPGRRSTQPGS*APRSGP Trigger: CGGGCCGCTGCGCGGGGCCAAAGAGCCCGGTTGCGT...TGACCGTCGCCCAGGCCTGTCCCTTCCCCGCTGACTGCCGCCTTTTCTTTCTGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029422.14 |
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| CDS-3UTR CAA 90 bp | CTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGCAGGCGATGCTGGAGTTCTaGCTGGTGGTCTTGGCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: LGDGQKRVREKPVAEGVQAMLEF*LVVLAA Trigger: CGCCGCCAAGACCACCAGCAAGAACTCCAGCATCGC...CTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | CAGGAGCCCCTGGGCTGGTGGCCCTCGTGGGATCCCGGGTCCAGCGCAGAGTCCCGCCTCTGCTTGATTTaGGTCTGGCCTTCGTCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: QEPLGWWPSWDPGSSAESRLCLI*VWPSSS Trigger: GGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCG...GGACTCTGCGCTGGACCCGGGATCCCACGAGGGCCACCAGCCCAGGGGCTCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
||
| CDS-3UTR CAA 90 bp | ACAGGCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCCGCCTCTGCTTGATTTaGGTCTGGCCTTCGTCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: TGLGDGQKRVREKPVAEGRLCLI*VWPSSS Trigger: GGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCG...GCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCTGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
||
| CDS-3UTR CAA 90 bp | AGGCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCG | + |
|
Preference number: 5 (lower is better) Translates to: RPGRRSEAGAGEAGRGGRRLRLC*ILVWPS Trigger: CGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCG...ACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | ACAGGCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCG | + |
|
Preference number: 5 (lower is better) Translates to: TGLGDGQKRVREKPVAEGRLRLC*ILVWPS Trigger: CGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCG...GCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | CAGGCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGTTCCAGGGTAAAATaGGTCCGACTTCGCCTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: QAWATVRSGCGRSRSRRACSRVK*VRLRLC Trigger: GCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACA...CGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | AGGGACAGGCCTGGGCGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGACGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCG | + |
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Preference number: 5 (lower is better) Translates to: RDRPGRRSEAGAGEAGRGRLRLC*ILVWPS Trigger: CGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCG...TCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCGCCCAGGCCTGTCCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | CGACGGTCAGAAGCGGGTGCGGGAGAAGCCGGTCGCGGAGGGCGTGCAGGATCGTGTTCCAGGGTAAAATaGGTCCGACTTCGCCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: RRSEAGAGEAGRGGRAGSCSRVK*VRLRLC Trigger: GCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACA...CGATCCTGCACGCCCTCCGCGACCGGCTTCTCCCGCACCCGCTTCTGACCGTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | AGAAGCCGGTCGCGGAGGGCGTGCAGGATCGCGCCGCTTAGGAGGCTCCACCGATGTTCCAGGGTAAAATaGGTCCGACTTCGCCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: RSRSRRACRIAPLRRLHRCSRVK*VRLRLC Trigger: GCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACA...TCGGTGGAGCCTCCTAAGCGGCGCGATCCTGCACGCCCTCCGCGACCGGCTTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | AAACCCGCTCCTACAAAGCCGAATTTTAGTCCCAAGGGCGGGTGGGCAGGAGCCGCGATGCTGGAGTTCTaGCTGGTGGTCTTGGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: KPAPTKPNFSPKGGWAGAAMLEF*LVVLAA Trigger: CGCCGCCAAGACCACCAGCAAGAACTCCAGCATCGC...GGCTCCTGCCCACCCGCCCTTGGGACTAAAATTCGGCTTTGTAGGAGCGGGTTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | GTGGCGCTATCCACTTCTCACTGTGGCCACACTCCTTTGTCCAGTCTCTATCCAGCGATGCTGGAGTTCTaGCTGGTGGTCTTGGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: VALSTSHCGHTPLSSLYPAMLEF*LVVLAA Trigger: CGCCGCCAAGACCACCAGCAAGAACTCCAGCATCGC...TGGATAGAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | AAACCCGCTCCTACAAAGCCGAATTTTAGTCCCAAGGGCGGGTGGGCAGGAGCCTGTTCCAGGGTAAAATaGGTCCGACTTCGCCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: KPAPTKPNFSPKGGWAGACSRVK*VRLRLC Trigger: GCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACA...GGCTCCTGCCCACCCGCCCTTGGGACTAAAATTCGGCTTTGTAGGAGCGGGTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | TTTGTCCAGTCTCTATCCAGACTTCCCCAAACCCGCTCCTACAAAGCCGAATTTGCGATGCTGGAGTTCTaGCTGGTGGTCTTGGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: FVQSLSRLPQTRSYKAEFAMLEF*LVVLAA Trigger: CGCCGCCAAGACCACCAGCAAGAACTCCAGCATCGC...AAATTCGGCTTTGTAGGAGCGGGTTTGGGGAAGTCTGGATAGAGACTGGACAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | GTGGCGCTATCCACTTCTCACTGTGGCCACACTCCTTTGTCCAGTCTCTATCCACCTTTCGCATCGTCTTaGCGATCCTTCAGTTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: VALSTSHCGHTPLSSLYPPFASS*RSFSSG Trigger: CCCTGAACTGAAGGATCGCAAAGACGATGCGAAAGG...TGGATAGAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS GCA 90 bp | AGCTCGTTGAGTTGTTCCAGGGTAAAATTGGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCG | + |
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Preference number: 5 (lower is better) Translates to: SSLSCSRVKLVRLRL*LILVWPSSSIPFAS Trigger: CGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACAACTCAACGAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS CCA 90 bp | TCCAGGGTAAAATTGGTCCGACTTCGCCTCTGCTTGATTTTGGTCTaGCCTTCGTCCTCCATCCCTTTCGCATCGTCTTTGCGATCCTTC | + |
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Preference number: 5 (lower is better) Translates to: SRVKLVRLRLCLILV*PSSSIPFASSLRSF Trigger: GAAGGATCGCAAAGACGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTTACCCTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS-3UTR CAA 90 bp | GCTGTGGCGCTATCCACTTCTCACTGTGGCCACACTCCTTTGTCCAGTCTCTATAGCCTCTCCAGCTCGTaGAGTTGTTCCAGGGTAAAA | + |
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Preference number: 5 (lower is better) Translates to: AVALSTSHCGHTPLSSLYSLSSS*SCSRVK Trigger: TTTTACCCTGGAACAACTCAACGAGCTGGAGAGGCT...ATAGAGACTGGACAAAGGAGTGTGGCCACAGTGAGAAGTGGATAGCGCCACAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | TTGCTGTTAGCAAGATTTTATTCCTATGAACGAGTCCATCGCCGCAGCTGTGGCCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCG | + |
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Preference number: 5 (lower is better) Translates to: LLLARFYSYERVHRRSCGRLRLC*ILVWPS Trigger: CGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCG...GCCACAGCTGCGGCGATGGACTCGTTCATAGGAATAAAATCTTGCTAACAGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | CACACTCCTTTGTCCAGTCTCTATCCAGACTTCCCCAAACCCGCTCCTACAAAGAGCCTCTCCAGCTCGTaGAGTTGTTCCAGGGTAAAA | + |
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Preference number: 5 (lower is better) Translates to: HTPLSSLYPDFPKPAPTKSLSSS*SCSRVK Trigger: TTTTACCCTGGAACAACTCAACGAGCTGGAGAGGCT...CTTTGTAGGAGCGGGTTTGGGGAAGTCTGGATAGAGACTGGACAAAGGAGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | TTTGTCCAGTCTCTATCCAGACTTCCCCAAACCCGCTCCTACAAAGCCGAATTTCCTTTCGCATCGTCTTaGCGATCCTTCAGTTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: FVQSLSRLPQTRSYKAEFPFASS*RSFSSG Trigger: CCCTGAACTGAAGGATCGCAAAGACGATGCGAAAGG...AAATTCGGCTTTGTAGGAGCGGGTTTGGGGAAGTCTGGATAGAGACTGGACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS-3UTR CAA 90 bp | TTTGTCCAGTCTCTATCCAGACTTCCCCAAACCCGCTCCTACAAAGCCGAATTTAGCCTCTCCAGCTCGTaGAGTTGTTCCAGGGTAAAA | + |
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Preference number: 5 (lower is better) Translates to: FVQSLSRLPQTRSYKAEFSLSSS*SCSRVK Trigger: TTTTACCCTGGAACAACTCAACGAGCTGGAGAGGCT...AAATTCGGCTTTGTAGGAGCGGGTTTGGGGAAGTCTGGATAGAGACTGGACAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS-3UTR CAA 90 bp | GCTTTTCCTCTTTCATGTAAATTAAAGGGGGTTCTAAAGAGGCTTGCTAGAGAAAGCCTCTCCAGCTCGTaGAGTTGTTCCAGGGTAAAA | + |
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Preference number: 5 (lower is better) Translates to: AFPLSCKLKGVLKRLARESLSSS*SCSRVK Trigger: TTTTACCCTGGAACAACTCAACGAGCTGGAGAGGCT...TTCTCTAGCAAGCCTCTTTAGAACCCCCTTTAATTTACATGAAAGAGGAAAAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS CAA 90 bp | GGGCTGCTGCGGTCGTCGCGGCCCGGCTCGACGCAACCGGGCTCTTaGGCCCCGCGCAGCGGCCCGCTCTCTAGCACCTCCCGGTACGTG | + |
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Preference number: 6 (lower is better) Translates to: GLLRSSRPGSTQPGS*APRSGPLSSTSRYV Trigger: CACGTACCGGGAGGTGCTAGAGAGCGGGCCGCTGCGCGGGGCCAAAGAGCCCGGTTGCGTCGAGCCGGGCCGCGACGACCGCAGCAGCCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029422.14 |
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| CDS GCA 72 bp | GGGACACCTCCGTCAGCCGCGGGCTGCCGGGCTCCCTaGTCCGCTCCGCGGCTCCCATGTCCAGCTCCCGGA | + |
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Preference number: 6 (lower is better) Translates to: GTPPSAAGCRAP*SAPRLPCPAPG Trigger: TCCGGGAGCTGGACATGGGAGCCGCGGAGCGGAGCAGGGAGCCCGGCAGCCCGCGGCTGACGGAGGTGTCCC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS GCA 72 bp | GGCGCGTGCGCGGCCAGGTGCGGATGCAGGTGGTGGTaGGCGTGCGCCACGGCGCTGTCCAGCTGCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: GACAARCGCRWW*ACATALSSCSC Trigger: GCAGCTGCAGCTGGACAGCGCCGTGGCGCACGCGCACCACCACCTGCATCCGCACCTGGCCGCGCACGCGCC 76% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 |
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| CDS CCA 72 bp | GGTCGTCGCGGCCCGGCTCGACGCAACCGGGCTCTTTaGCCCCGCGCAGCGGCCCGCTCTCTAGCACCTCCC | + |
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Preference number: 6 (lower is better) Translates to: GRRGPARRNRAL*PRAAARSLAPP Trigger: GGGAGGTGCTAGAGAGCGGGCCGCTGCGCGGGGCCAAAGAGCCCGGTTGCGTCGAGCCGGGCCGCGACGACC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029422.14 |
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| CDS CAA 72 bp | CGGTCGTCGCGGCCCGGCTCGACGCAACCGGGCTCTTaGGCCCCGCGCAGCGGCCCGCTCTCTAGCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: RSSRPGSTQPGS*APRSGPLSSTS Trigger: GGAGGTGCTAGAGAGCGGGCCGCTGCGCGGGGCCAAAGAGCCCGGTTGCGTCGAGCCGGGCCGCGACGACCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029422.14 |
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| CDS CAA 90 bp | TTGATTTTGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCGTCTTaGCGATCCTTCAGTTCAGGGGACACCTCCGTCAGCCGCGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: LILVWPSSSIPFASS*RSFSSGDTSVSRGL Trigger: CAGCCCGCGGCTGACGGAGGTGTCCCCTGAACTGAAGGATCGCAAAGACGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS GCA 72 bp | TCTGGCCTTCGTCCTCCATCCCTTTCGCATCGTCTTTaGGATCCTTCAGTTCAGGGGACACCTCCGTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SGLRPPSLSHRL*DPSVQGTPPSA Trigger: GGCTGACGGAGGTGTCCCCTGAACTGAAGGATCGCAAAGACGATGCGAAAGGGATGGAGGACGAAGGCCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS CAA 72 bp | GTCTGGCCTTCGTCCTCCATCCCTTTCGCATCGTCTTaGCGATCCTTCAGTTCAGGGGACACCTCCGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: VWPSSSIPFASS*RSFSSGDTSVS Trigger: GCTGACGGAGGTGTCCCCTGAACTGAAGGATCGCAAAGACGATGCGAAAGGGATGGAGGACGAAGGCCAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS CAA 72 bp | AGGGTAAAATTGGTCCGACTTCGCCTCTGCTTGATTTaGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCG | + |
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Preference number: 6 (lower is better) Translates to: RVKLVRLRLCLI*VWPSSSIPFAS Trigger: CGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTTACCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS CAA 72 bp | GTGGGTCTCATCGAAAAGCCTCTCCAGCTCGTTGAGTaGTTCCAGGGTAAAATTGGTCCGACTTCGCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: VGLIEKPLQLVE*FQGKIGPTSPL Trigger: CAGAGGCGAAGTCGGACCAATTTTACCCTGGAACAACTCAACGAGCTGGAGAGGCTTTTCGATGAGACCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 ENSMUST00000195261.2 |
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| CDS CAA 90 bp | AGTTGTTCCAGGGTAAAATTGGTCCGACTTCGCCTCTGCTTGATTTaGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCGTCTTTGCGA | + |
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Preference number: 6 (lower is better) Translates to: SCSRVKLVRLRLCLI*VWPSSSIPFASSLR Trigger: TCGCAAAGACGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS CAA 90 bp | TCGTTGAGTTGTTCCAGGGTAAAATTGGTCCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCGTCCTCCATCCCTTTCGCATCGTCT | + |
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Preference number: 6 (lower is better) Translates to: SLSCSRVKLVRLRLC*ILVWPSSSIPFASS Trigger: AGACGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACAACTCAACGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS GCA 72 bp | AGTTGTTCCAGGGTAAAATTGGTCCGACTTCGCCTCTaGTTGATTTTGGTCTGGCCTTCGTCCTCCATCCCT | + |
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Preference number: 6 (lower is better) Translates to: SCSRVKLVRLRL*LILVWPSSSIP Trigger: AGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS GCA 72 bp | GCTGCGCCTGAACCTGAAAGGACAAGGGCGTCACGTTaGAATGACTATCCTGCTGAAATGGCATCCTTAAAG | + |
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Preference number: 6 (lower is better) Translates to: AAPEPERTRASR*NDYPAEMASLK Trigger: CTTTAAGGATGCCATTTCAGCAGGATAGTCATTGCAACGTGACGCCCTTGTCCTTTCAGGTTCAGGCGCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029422.14 |
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| CDS CCA 72 bp | AAATTGGTCCGACTTCGCCTCTGCTTGATTTTGGTCTaGCCTTCGTCCTCCATCCCTTTCGCATCGTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: KLVRLRLCLILV*PSSSIPFASSL Trigger: CAAAGACGATGCGAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS CAA 72 bp | TGTTCCAGGGTAAAATTGGTCCGACTTCGCCTCTGCTaGATTTTGGTCTGGCCTTCGTCCTCCATCCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: CSRVKLVRLRLC*ILVWPSSSIPF Trigger: GAAAGGGATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029422.14 ENSMUST00000162098.9 |
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| CDS CAA 72 bp | AGCCTCTCCAGCTCGTTGAGTTGTTCCAGGGTAAAATaGGTCCGACTTCGCCTCTGCTTGATTTTGGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: SLSSSLSCSRVK*VRLRLCLILVW Trigger: CCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACAACTCAACGAGCTGGAGAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000029422.14 ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 ENSMUST00000195261.2 |
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| CDS TCA 72 bp | GAACCTGCTGAAATGGCATCCTTAAAGCACCTACGTTaGCATAGGGTGCAACTCTACAAGCTTCAAACTGGC | + |
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Preference number: 6 (lower is better) Translates to: EPAEMASLKHLR*HRVQLYKLQTG Trigger: GCCAGTTTGAAGCTTGTAGAGTTGCACCCTATGTCAACGTAGGTGCTTTAAGGATGCCATTTCAGCAGGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000162060.9 ENSMUST00000162098.9 ENSMUST00000162439.8 ENSMUST00000195261.2 |
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| CDS TCA 72 bp | TATCCTGCTGAAATGGCATCCTTAAAGCACCTACGTTaGCATAGGGTGCAACTCTACAAGCTTCAAACTGGC | + |
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Preference number: 6 (lower is better) Translates to: YPAEMASLKHLR*HRVQLYKLQTG Trigger: GCCAGTTTGAAGCTTGTAGAGTTGCACCCTATGTCAACGTAGGTGCTTTAAGGATGCCATTTCAGCAGGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029422.14 |
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