Pregenerated sensors for SHMT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020534Ensembl transcript IDs: ENSMUST00000018744.15, ENSMUST00000174174.8
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCAGTaGTCCACTTCTCAGCCTCAAGAGGGCACAGGGTTCACAGGGTCC | + |
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Preference number: 1 (lower is better) Translates to: QVNRNTHQRKHGTAQ*STSQPQEGTGFTGS Trigger: GGACCCTGTGAACCCTGTGCCCTCTTGAGGCTGAGAAGTGGACCACTGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR TCA 90 bp | TTGCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTaGACTCTTTCAGTGTGGCCTTCGTGGCCATGTGGCTCTGAATCT | + |
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Preference number: 1 (lower is better) Translates to: LPQHSGSSHLLPASL*TLSVWPSWPCGSES Trigger: AGATTCAGAGCCACATGGCCACGAAGGCCACACTGAAAGAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR TCA 90 bp | TATCTGGGCAACAGAAAAGGAAGAGTGGGAAACACAAGGGTGAAGTaGACATTTGCTTACCTGCTACAGGACCCACCGAGTAAGCAGAAA | + |
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Preference number: 1 (lower is better) Translates to: YLGNRKGRVGNTRVK*TFAYLLQDPPSKQK Trigger: TTTCTGCTTACTCGGTGGGTCCTGTAGCAGGTAAGCAAATGTTCACTTCACCCTTGTGTTTCCCACTCTTCCTTTTCTGTTGCCCAGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR CCA 90 bp | AAATATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATaGTACAGCTCAGTGGTCCACTTCTCAGCCTCAAGAGGGCACAGG | + |
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Preference number: 1 (lower is better) Translates to: KYLKTGKQKHPPKKA*YSSVVHFSASRGHR Trigger: CCTGTGCCCTCTTGAGGCTGAGAAGTGGACCACTGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR GCA 90 bp | TCTTTAAAACAAAATTCTCTGTGTATCACCATTCTGCCTGATGTATaGCTGTACTTCATGTGTGCCCGGTGTCCTCAGAACCCAGAAGAG | + |
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Preference number: 1 (lower is better) Translates to: SLKQNSLCITILPDV*LYFMCARCPQNPEE Trigger: CTCTTCTGGGTTCTGAGGACACCGGGCACACATGAAGTACAGGCATACATCAGGCAGAATGGTGATACACAGAGAATTTTGTTTTAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR CCA 90 bp | CTAGTTTCTAACCTCAAACTTAAGACAGAAAACTCAATGCTCCTCTaGTATCTGGGCAACAGAAAAGGAAGAGTGGGAAACACAAGGGTG | + |
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Preference number: 1 (lower is better) Translates to: LVSNLKLKTENSMLL*YLGNRKGRVGNTRV Trigger: CACCCTTGTGTTTCCCACTCTTCCTTTTCTGTTGCCCAGATACCAGAGGAGCATTGAGTTTTCTGTCTTAAGTTTGAGGTTAGAAACTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR-3UTR TCA 90 bp | GTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCCTGCCACGAGCCCACTaGTATGTGCCATGTCTGCCA | + |
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Preference number: 2 (lower is better) Translates to: VLHFFPESCHSTLDLLISLPRAH*YVPCLP Trigger: TGGCAGACATGGCACATATCAGTGGGCTCGTGGCAG...GGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR CCA 90 bp | AGCAAAGTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCCCAGTCGCAGTCCACTaGGCCGTAACGCGCTCTTGT | + |
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Preference number: 2 (lower is better) Translates to: SKVLHFFPESCHSTLDLLPVAVH*AVTRSC Trigger: ACAAGAGCGCGTTACGGCCCAGTGGACTGCGACTGG...GAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR GCA 90 bp | AGCAAAGTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCGTAGCAGCTGGTCCCTaGGATGATCAGCTTCGGGTG | + |
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Preference number: 2 (lower is better) Translates to: SKVLHFFPESCHSTLDLLVAAGP*DDQLRV Trigger: CACCCGAAGCTGATCATCGCAGGGACCAGCTGCTAC...GAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR CCA 90 bp | GCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGAACTCTTTCACAGAGCCCTGCAGTTaGCCAACACCTGGAGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: ATALWIFSSPASFSLNSFTEPCS*PTPGAG Trigger: ACCAGCTCCAGGTGTTGGCCAACTGCAGGGCTCTGT...GAAAGAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR CCA 90 bp | CGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGTCAGTGTGGCCTTCGTaGCCATGTGGCTCTGAATCT | + |
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Preference number: 2 (lower is better) Translates to: RRVATALWIFSSPASFSLSVWPS*PCGSES Trigger: AGATTCAGAGCCACATGGCCACGAAGGCCACACTGA...CAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR CCA 90 bp | GTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCGTAGTGGTCACTACATaGCAGTGTTCAAAGGGGGAG | + |
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Preference number: 2 (lower is better) Translates to: VLHFFPESCHSTLDLLISVVVTT*QCSKGE Trigger: CTCCCCCTTTGAACACTGCCATGTAGTGACCACTAC...GGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR CCA 90 bp | GTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCCCTCTCAGGGTCTTGTaGGTTGTAGTGGTCACTACA | + |
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Preference number: 2 (lower is better) Translates to: VLHFFPESCHSTLDLLISPLRVL*VVVVTT Trigger: TGTAGTGACCACTACAACCCACAAGACCCTGAGAGG...GGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR TCA 90 bp | GCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGAACTCTTTCGTGGCCATGTGGCTCTaGATCTGCAGTGTCAACTCT | + |
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Preference number: 2 (lower is better) Translates to: ATALWIFSSPASFSLNSFVAMWL*ICSVNS Trigger: AGAGTTGACACTGCAGATTCAGAGCCACATGGCCAC...GAAAGAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR GCA 90 bp | GTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCGAGCCCACTGATATGTaGCATGTCTGCCATGAGATA | + |
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Preference number: 2 (lower is better) Translates to: VLHFFPESCHSTLDLLISEPTDM*HVCHEI Trigger: TATCTCATGGCAGACATGGCACATATCAGTGGGCTC...GGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR CCA 90 bp | CAAAGTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCGCGCTCTTGTCACCTaGGCAGGTATTCTTGTTGCA | + |
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Preference number: 2 (lower is better) Translates to: QSSPLLPGELPQHSGSSHRALVT*AGILVA Trigger: TGCAACAAGAATACCTGCCCAGGTGACAAGAGCGCG...ATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR CAA 90 bp | GTAGTGAGAAGTTGGAAGCAAAGTTCTCCACTTCTTCCCGGAGAGTaGCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: VVRSWKQSSPLLPGE*PQHSGSSHLLPASL Trigger: AAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTGCTTCCAACTTCTCACTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR TCA 90 bp | CGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGTATCAGAGCCACCTGTaGCTATTTTGTAGCCTAGCT | + |
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Preference number: 2 (lower is better) Translates to: RRVATALWIFSSPASFSLYQSHL*LFCSLA Trigger: AGCTAGGCTACAAAATAGTCACAGGTGGCTCTGATA...CAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR TCA 90 bp | CGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGTCCATTAGGATCAAGTaGTTATCAGAGCCACCTGTG | + |
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Preference number: 2 (lower is better) Translates to: RRVATALWIFSSPASFSLSIRIK*LSEPPV Trigger: CACAGGTGGCTCTGATAATCACTTGATCCTAATGGA...CAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGAAGGTGGCATCTGGGTTCCTAATTGTAGGAAGGAGCTGCTTATCTCAGGCATTCTGCCTGATGTATaGCTGTACTTCATGTGTGCC | + |
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Preference number: 2 (lower is better) Translates to: SEGGIWVPNCRKELLISGILPDV*LYFMCA Trigger: GGCACACATGAAGTACAGGCATACATCAGGCAGAAT...GCCTGAGATAAGCAGCTCCTTCCTACAATTAGGAACCCAGATGCCACCTTCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR-3UTR GCA 90 bp | GCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGAACTCTTTCCATAGTAAGTCTCTTTaGCAGTCTTGGGATCCACAC | + |
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Preference number: 2 (lower is better) Translates to: ATALWIFSSPASFSLNSFHSKSL*QSWDPH Trigger: GTGTGGATCCCAAGACTGGCAAAGAGACTTACTATG...GAAAGAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGAAGGTGGCATCTGGGTTCCTAATTGTAGGAAGGAGCTGCTTATCTCAGGCTGTGTATCACCATTCTaGCTGATGTATGCCTGTACT | + |
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Preference number: 2 (lower is better) Translates to: SEGGIWVPNCRKELLISGCVSPF*LMYACT Trigger: AGTACAGGCATACATCAGGCAGAATGGTGATACACA...GCCTGAGATAAGCAGCTCCTTCCTACAATTAGGAACCCAGATGCCACCTTCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR-3UTR CCA 90 bp | TTCTTAAACCAGGAGGGGATTCATACCCATGGAGACAGCCAATTGTACAAGACTCCACCAAAGAAAGCATaGTACAGCTCAGTGGTCCAC | + |
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Preference number: 2 (lower is better) Translates to: FLNQEGIHTHGDSQLYKTPPKKA*YSSVVH Trigger: GTGGACCACTGAGCTGTACCATGCTTTCTTTGGTGG...AGTCTTGTACAATTGGCTGTCTCCATGGGTATGAATCCCCTCCTGGTTTAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR-3UTR CCA 90 bp | AGCAAAGTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCAAGTGTGCTACTTTTTaGAAGTCTTCTTCCAAAAGT | + |
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Preference number: 2 (lower is better) Translates to: SKVLHFFPESCHSTLDLLKCATF*KSSSKS Trigger: ACTTTTGGAAGAAGACTTCCAAAAAGTAGCACACTT...GAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR CAA 90 bp | AGCAAAGTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCGACAGAGCCCTGCAGTaGGCCAACACCTGGAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: SKVLHFFPESCHSTLDLLDRALQ*ANTWSW Trigger: CCAGCTCCAGGTGTTGGCCAACTGCAGGGCTCTGTC...GAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR-3UTR CAA 90 bp | AGCAAAGTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCGGGAACACGGCAGAGTaGATGAGGGACTCCAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: SKVLHFFPESCHSTLDLLGNTAE*MRDSSS Trigger: TGAACTGGAGTCCCTCATCAACTCTGCCGTGTTCCC...GAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR TCA 72 bp | CACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTaGACTCTTTCAGTGTGGCCTTCGTGGCCATGTGGC | + |
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Preference number: 3 (lower is better) Translates to: HSGSSHLLPASL*TLSVWPSWPCG Trigger: GCCACATGGCCACGAAGGCCACACTGAAAGAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR GCA 72 bp | GTTGGAAGCAAAGTTCTCCACTTCTTCCCGGAGAGTTaGCACAGCACTCTGGATCTTCTCATCTCCTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: VGSKVLHFFPES*HSTLDLLISCQ Trigger: CTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTGCTTCCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR CCA 72 bp | AGAAACACCCACCAAAGAAAGCATGGTACAGCTCAGTaGTCCACTTCTCAGCCTCAAGAGGGCACAGGGTTC | + |
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Preference number: 3 (lower is better) Translates to: RNTHQRKHGTAQ*STSQPQEGTGF Trigger: GAACCCTGTGCCCTCTTGAGGCTGAGAAGTGGACCACTGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR CCA 72 bp | TTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTaGATCTTCTCATCTCCTGCCAGCTTCTCTTTGAAC | + |
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Preference number: 3 (lower is better) Translates to: FSTSSRRVATAL*IFSSPASFSLN Trigger: GTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR TCA 72 bp | TGGGCAACAGAAAAGGAAGAGTGGGAAACACAAGGGTaGAGTGAACATTTGCTTACCTGCTACAGGACCCAC | + |
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Preference number: 3 (lower is better) Translates to: WATEKEEWETQG*SEHLLTCYRTH Trigger: GTGGGTCCTGTAGCAGGTAAGCAAATGTTCACTTCACCCTTGTGTTTCCCACTCTTCCTTTTCTGTTGCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR TCA 72 bp | CTCAGGCAGGTGGAATATAAAGCCTTTGGCCTCTGCTaGTTCTTAAACCAGGAGGGGATTCATACCCATGGA | + |
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Preference number: 3 (lower is better) Translates to: LRQVEYKAFGLC*FLNQEGIHTHG Trigger: TCCATGGGTATGAATCCCCTCCTGGTTTAAGAATCAGCAGAGGCCAAAGGCTTTATATTCCACCTGCCTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR TCA 72 bp | AACAGAAAAGGAAGAGTGGGAAACACAAGGGTGAAGTaGACATTTGCTTACCTGCTACAGGACCCACCGAGT | + |
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Preference number: 3 (lower is better) Translates to: NRKGRVGNTRVK*TFAYLLQDPPS Trigger: ACTCGGTGGGTCCTGTAGCAGGTAAGCAAATGTTCACTTCACCCTTGTGTTTCCCACTCTTCCTTTTCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR CCA 72 bp | AAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATaGTACAGCTCAGTGGTCCACTTCTCAGCCTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: KTGKQKHPPKKA*YSSVVHFSASR Trigger: TCTTGAGGCTGAGAAGTGGACCACTGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR-3UTR CAA 90 bp | GCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGAACTCTTTCAAAGTGTGCTACTTTTaGGAAGTCTTCTTCCAAAAG | + |
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Preference number: 3 (lower is better) Translates to: ATALWIFSSPASFSLNSFKVCYF*EVFFQK Trigger: CTTTTGGAAGAAGACTTCCAAAAAGTAGCACACTTT...GAAAGAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| 3UTR TCA 72 bp | TTTAAAACAAAATTCTCTGTGTATCACCATTCTGCCTaGTGTATGCCTGTACTTCATGTGTGCCCGGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: FKTKFSVYHHSA*CMPVLHVCPVS Trigger: GGACACCGGGCACACATGAAGTACAGGCATACATCAGGCAGAATGGTGATACACAGAGAATTTTGTTTTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR CCA 72 bp | AACCTCAAACTTAAGACAGAAAACTCAATGCTCCTCTaGTATCTGGGCAACAGAAAAGGAAGAGTGGGAAAC | + |
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Preference number: 3 (lower is better) Translates to: NLKLKTENSMLL*YLGNRKGRVGN Trigger: GTTTCCCACTCTTCCTTTTCTGTTGCCCAGATACCAGAGGAGCATTGAGTTTTCTGTCTTAAGTTTGAGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR CCA 72 bp | AATGTACAAATAAAGACTCTTTCAGAAGGTGGCATCTaGGTTCCTAATTGTAGGAAGGAGCTGCTTATCTCA | + |
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Preference number: 3 (lower is better) Translates to: NVQIKTLSEGGI*VPNCRKELLIS Trigger: TGAGATAAGCAGCTCCTTCCTACAATTAGGAACCCAGATGCCACCTTCTGAAAGAGTCTTTATTTGTACATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR TCA 72 bp | AATTCTGGAATCTTTAATAGCTTTGCCTCACATGCATaGGCGAGGAGATCTAATGGCTACATAACGTTTCAA | + |
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Preference number: 3 (lower is better) Translates to: NSGIFNSFASHA*ARRSNGYITFQ Trigger: TTGAAACGTTATGTAGCCATTAGATCTCCTCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAGAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR TCA 90 bp | TCAGCCTCAAGAGGGCACAGGGTTCACAGGGTCCCGGAACAATCCTACCCTCTTCTGCCACGAGCCCACTaGTATGTGCCATGTCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: SASRGHRVHRVPEQSYPLLPRAH*YVPCLP Trigger: TGGCAGACATGGCACATATCAGTGGGCTCGTGGCAG...AAGAGGGTAGGATTGTTCCGGGACCCTGTGAACCCTGTGCCCTCTTGAGGCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR TCA 90 bp | CAGCCTCAAGAGGGCACAGGGTTCACAGGGTCCCGGAACAATCCTACCCTCTTGCTGCCAGCTTCTCTTTaGACTCTTTCAGTGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: QPQEGTGFTGSRNNPTLLLPASL*TLSVWP Trigger: AGGCCACACTGAAAGAGTTCAAAGAGAAGCTGGCAG...CAAGAGGGTAGGATTGTTCCGGGACCCTGTGAACCCTGTGCCCTCTTGAGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | CAAAGTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCATAAGCCATGGGTCAGATaGCCACCGTCTGGCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: QSSPLLPGELPQHSGSSHKPWVR*PPSGRS Trigger: GGACCTGCCAGACGGTGGCCATCTGACCCATGGCTT...ATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| CDS-3UTR CCA 90 bp | CGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGTTGCAGGGGAGCCTTTaGCCTGGATATCCCTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: RRVATALWIFSSPASFSLLQGSL*PGYPSE Trigger: CTCTGAGGGATATCCAGGCCAAAGGCTCCCCTGCAA...CAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| CDS-3UTR GCA 90 bp | TCAGCCTCAAGAGGGCACAGGGTTCACAGGGTCCCGGAACAATCCTACCCTCTTGAGCCCACTGATATGTaGCATGTCTGCCATGAGATA | + |
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Preference number: 4 (lower is better) Translates to: SASRGHRVHRVPEQSYPLEPTDM*HVCHEI Trigger: TATCTCATGGCAGACATGGCACATATCAGTGGGCTC...AAGAGGGTAGGATTGTTCCGGGACCCTGTGAACCCTGTGCCCTCTTGAGGCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR GCA 90 bp | CGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGATACACAGCAAAGTTTaGAGGGGAGCCTTTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: RRVATALWIFSSPASFSLIHSKV*RGAFGL Trigger: CAGGCCAAAGGCTCCCCTGCAAACTTTGCTGTGTAT...CAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| CDS-3UTR CCA 90 bp | GTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCGGGGAGCCTTTGGCCTaGATATCCCTCAGAGTATTT | + |
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Preference number: 4 (lower is better) Translates to: VLHFFPESCHSTLDLLISGEPLA*ISLRVF Trigger: AAATACTCTGAGGGATATCCAGGCCAAAGGCTCCCC...GGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| CDS-3UTR CCA 90 bp | GCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGAACTCTTTCCCAACACAGCTCGGCTaGCAAAATTCTCCGAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: ATALWIFSSPASFSLNSFPTQLG*QNSPRQ Trigger: TTGCCTCGGAGAATTTTGCCAGCCGAGCTGTGTTGG...GAAAGAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| CDS-3UTR CCA 90 bp | TCAGAAGGTGGCATCTGGGTTCCTAATTGTAGGAAGGAGCTGCTTATCTCAGGCCGCGCTCTTGTCACCTaGGCAGGTATTCTTGTTGCA | + |
|
Preference number: 4 (lower is better) Translates to: SEGGIWVPNCRKELLISGRALVT*AGILVA Trigger: TGCAACAAGAATACCTGCCCAGGTGACAAGAGCGCG...GCCTGAGATAAGCAGCTCCTTCCTACAATTAGGAACCCAGATGCCACCTTCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | CAGCCTCAAGAGGGCACAGGGTTCACAGGGTCCCGGAACAATCCTACCCTCTTGAACTCTATCCCCCTGTaGATAAAGTGTGCTACTTTT | + |
|
Preference number: 4 (lower is better) Translates to: QPQEGTGFTGSRNNPTLLNSIPL*IKCATF Trigger: AAAAGTAGCACACTTTATCCACAGGGGGATAGAGTT...CAAGAGGGTAGGATTGTTCCGGGACCCTGTGAACCCTGTGCCCTCTTGAGGCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | TCAGAAGGTGGCATCTGGGTTCCTAATTGTAGGAAGGAGCTGCTTATCTCAGGCGTTGCCACAGCACTCTaGATCTTCTCATCTCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: SEGGIWVPNCRKELLISGVATAL*IFSSPA Trigger: GGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAAC...GCCTGAGATAAGCAGCTCCTTCCTACAATTAGGAACCCAGATGCCACCTTCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| 3UTR CAA 72 bp | AGTTGGAAGCAAAGTTCTCCACTTCTTCCCGGAGAGTaGCCACAGCACTCTGGATCTTCTCATCTCCTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SWKQSSPLLPGE*PQHSGSSHLLP Trigger: TGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTGCTTCCAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| CDS-3UTR CCA 90 bp | GCAGAAAGGACAATTCTGGAATCTTTAATAGCTTTGCCTCACATGCATGAGCGAAAGCCATGGGTCAGATaGCCACCGTCTGGCAGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: AERTILESLIALPHMHERKPWVR*PPSGRS Trigger: GGACCTGCCAGACGGTGGCCATCTGACCCATGGCTT...TCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAGAATTGTCCTTTCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | TCAGAAGGTGGCATCTGGGTTCCTAATTGTAGGAAGGAGCTGCTTATCTCAGGCGTAGTGGTCACTACATaGCAGTGTTCAAAGGGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SEGGIWVPNCRKELLISGVVVTT*QCSKGE Trigger: CTCCCCCTTTGAACACTGCCATGTAGTGACCACTAC...GCCTGAGATAAGCAGCTCCTTCCTACAATTAGGAACCCAGATGCCACCTTCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | ATTCTGGAATCTTTAATAGCTTTGCCTCACATGCATGAGCGAGGAGATCTAATGCCAGTCGCAGTCCACTaGGCCGTAACGCGCTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: ILESLIALPHMHERGDLMPVAVH*AVTRSC Trigger: ACAAGAGCGCGTTACGGCCCAGTGGACTGCGACTGG...CATTAGATCTCCTCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR TCA 90 bp | GCAGAAAGGACAATTCTGGAATCTTTAATAGCTTTGCCTCACATGCATGAGCGATCTCCAGCTCATCGATaGACTCGGTCCCGCCATAAT | + |
|
Preference number: 4 (lower is better) Translates to: AERTILESLIALPHMHERSPAHR*TRSRHN Trigger: ATTATGGCGGGACCGAGTTCATCGATGAGCTGGAGA...TCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAGAATTGTCCTTTCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR GCA 90 bp | TATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCAGTAGCAGCTGGTCCCTaGGATGATCAGCTTCGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: YLKTGKQKHPPKKAWYSSVAAGP*DDQLRV Trigger: CACCCGAAGCTGATCATCGCAGGGACCAGCTGCTAC...TGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR GCA 90 bp | TTCTTAAACCAGGAGGGGATTCATACCCATGGAGACAGCCAATTGTACAAGACTTCTTGGGATCCACACTaGGCACACCCTTTCTGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: FLNQEGIHTHGDSQLYKTSWDPH*AHPFCR Trigger: TCTACAGAAAGGGTGTGCGCAGTGTGGATCCCAAGA...AGTCTTGTACAATTGGCTGTCTCCATGGGTATGAATCCCCTCCTGGTTTAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | TATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCAACAGAGCCCTGCAGTTaGCCAACACCTGGAGCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: YLKTGKQKHPPKKAWYSSTEPCS*PTPGAG Trigger: ACCAGCTCCAGGTGTTGGCCAACTGCAGGGCTCTGT...TGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | ATTCTGGAATCTTTAATAGCTTTGCCTCACATGCATGAGCGAGGAGATCTAATGCCAACACAGCTCGGCTaGCAAAATTCTCCGAGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: ILESLIALPHMHERGDLMPTQLG*QNSPRQ Trigger: TTGCCTCGGAGAATTTTGCCAGCCGAGCTGTGTTGG...CATTAGATCTCCTCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | ATTCTGGAATCTTTAATAGCTTTGCCTCACATGCATGAGCGAGGAGATCTAATGTCAGTGTGGCCTTCGTaGCCATGTGGCTCTGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: ILESLIALPHMHERGDLMSVWPS*PCGSES Trigger: AGATTCAGAGCCACATGGCCACGAAGGCCACACTGA...CATTAGATCTCCTCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR TCA 90 bp | TTCTTAAACCAGGAGGGGATTCATACCCATGGAGACAGCCAATTGTACAAGACTTATCAGAGCCACCTGTaGCTATTTTGTAGCCTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: FLNQEGIHTHGDSQLYKTYQSHL*LFCSLA Trigger: AGCTAGGCTACAAAATAGTCACAGGTGGCTCTGATA...AGTCTTGTACAATTGGCTGTCTCCATGGGTATGAATCCCCTCCTGGTTTAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR TCA 90 bp | TTCTTAAACCAGGAGGGGATTCATACCCATGGAGACAGCCAATTGTACAAGACTTCCATTAGGATCAAGTaGTTATCAGAGCCACCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: FLNQEGIHTHGDSQLYKTSIRIK*LSEPPV Trigger: CACAGGTGGCTCTGATAATCACTTGATCCTAATGGA...AGTCTTGTACAATTGGCTGTCTCCATGGGTATGAATCCCCTCCTGGTTTAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR TCA 90 bp | TATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCAGTGGCCATGTGGCTCTaGATCTGCAGTGTCAACTCT | + |
|
Preference number: 4 (lower is better) Translates to: YLKTGKQKHPPKKAWYSSVAMWL*ICSVNS Trigger: AGAGTTGACACTGCAGATTCAGAGCCACATGGCCAC...TGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR GCA 90 bp | TATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCATTCTTCCCGGAGAGTTaGCACAGCACTCTGGATCTT | + |
|
Preference number: 4 (lower is better) Translates to: YLKTGKQKHPPKKAWYSSFFPES*HSTLDL Trigger: AAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAA...TGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | TATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCACCTCTCAGGGTCTTGTaGGTTGTAGTGGTCACTACA | + |
|
Preference number: 4 (lower is better) Translates to: YLKTGKQKHPPKKAWYSSPLRVL*VVVVTT Trigger: TGTAGTGACCACTACAACCCACAAGACCCTGAGAGG...TGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | GCAGAAAGGACAATTCTGGAATCTTTAATAGCTTTGCCTCACATGCATGAGCGACAGGTAGTGAGAAGTTaGAAGCAAAGTTCTCCACTT | + |
|
Preference number: 4 (lower is better) Translates to: AERTILESLIALPHMHERQVVRS*KQSSPL Trigger: AAGTGGAGAACTTTGCTTCCAACTTCTCACTACCTG...TCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAGAATTGTCCTTTCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR GCA 90 bp | TATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCACATAGTAAGTCTCTTTaGCAGTCTTGGGATCCACAC | + |
|
Preference number: 4 (lower is better) Translates to: YLKTGKQKHPPKKAWYSSHSKSL*QSWDPH Trigger: GTGTGGATCCCAAGACTGGCAAAGAGACTTACTATG...TGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR GCA 90 bp | TATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCAGATCTTCTCATCTCCTaGCAGCTTCTCTTTGAACTC | + |
|
Preference number: 4 (lower is better) Translates to: YLKTGKQKHPPKKAWYSSDLLIS*QLLFEL Trigger: GAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATC...TGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | GCAGAAAGGACAATTCTGGAATCTTTAATAGCTTTGCCTCACATGCATGAGCGAATAATACCTTTGGCCTaGATATCCCTCAGAGTATTT | + |
|
Preference number: 4 (lower is better) Translates to: AERTILESLIALPHMHERIIPLA*ISLRVF Trigger: AAATACTCTGAGGGATATCCAGGCCAAAGGTATTAT...TCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAGAATTGTCCTTTCTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CCA 90 bp | GCAGAAAGGACAATTCTGGAATCTTTAATAGCTTTGCCTCACATGCATGAGCGAAAGTGTGCTACTTTTTaGAAGTCTTCTTCCAAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: AERTILESLIALPHMHERKCATF*KSSSKS Trigger: ACTTTTGGAAGAAGACTTCCAAAAAGTAGCACACTT...TCGCTCATGCATGTGAGGCAAAGCTATTAAAGATTCCAGAATTGTCCTTTCTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CAA 90 bp | CAGCCTCAAGAGGGCACAGGGTTCACAGGGTCCCGGAACAATCCTACCCTCTTGGGGAACACGGCAGAGTaGATGAGGGACTCCAGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: QPQEGTGFTGSRNNPTLLGNTAE*MRDSSS Trigger: TGAACTGGAGTCCCTCATCAACTCTGCCGTGTTCCC...CAAGAGGGTAGGATTGTTCCGGGACCCTGTGAACCCTGTGCCCTCTTGAGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CAA 90 bp | TCAGAAGGTGGCATCTGGGTTCCTAATTGTAGGAAGGAGCTGCTTATCTCAGGCGACAGAGCCCTGCAGTaGGCCAACACCTGGAGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: SEGGIWVPNCRKELLISGDRALQ*ANTWSW Trigger: CCAGCTCCAGGTGTTGGCCAACTGCAGGGCTCTGTC...GCCTGAGATAAGCAGCTCCTTCCTACAATTAGGAACCCAGATGCCACCTTCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CAA 90 bp | GTTCTCCACTTCTTCCCGGAGAGTTGCCACAGCACTCTGGATCTTCTCATCTCCTTTGCAGGGGAGCCTTaGGCCTGGATATCCCTCAGA | + |
|
Preference number: 5 (lower is better) Translates to: VLHFFPESCHSTLDLLISFAGEP*AWISLR Trigger: TCTGAGGGATATCCAGGCCAAAGGCTCCCCTGCAAA...GGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| CDS-3UTR CAA 90 bp | GCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGAACTCTTTCTCGGCATCACTGTCCTaGAGGGGCTGCGACAACATC | + |
|
Preference number: 5 (lower is better) Translates to: ATALWIFSSPASFSLNSFSASLS*RGCDNI Trigger: GATGTTGTCGCAGCCCCTCAAGGACAGTGATGCCGA...GAAAGAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| CDS-3UTR CAA 90 bp | CATGAGATACGCCCCATTATCATCCGCAATCTTCCGCAGCCGTGCGTAGTCCAGTATACACAGCAAAGTTaGCAGGGGAGCCTTTGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: HEIRPIIIRNLPQPCVVQYTQQS*QGSLWP Trigger: AGGCCAAAGGCTCCCCTGCAAACTTTGCTGTGTATA...CTGGACTACGCACGGCTGCGGAAGATTGCGGATGATAATGGGGCGTATCTCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| CDS-3UTR CAA 90 bp | GCCACAGCACTCTGGATCTTCTCATCTCCTGCCAGCTTCTCTTTGAACTCTTTCCCGACCCTCTGCCGGTaGCTCTCCTTTTTAATGATG | + |
|
Preference number: 5 (lower is better) Translates to: ATALWIFSSPASFSLNSFPTLCR*LSFLMM Trigger: CATCATTAAAAAGGAGAGCAACCGGCAGAGGGTCGG...GAAAGAGTTCAAAGAGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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| CDS-3UTR CAA 90 bp | TTCTTAAACCAGGAGGGGATTCATACCCATGGAGACAGCCAATTGTACAAGACTTCGGCATCACTGTCCTaGAGGGGCTGCGACAACATC | + |
|
Preference number: 5 (lower is better) Translates to: FLNQEGIHTHGDSQLYKTSASLS*RGCDNI Trigger: GATGTTGTCGCAGCCCCTCAAGGACAGTGATGCCGA...AGTCTTGTACAATTGGCTGTCTCCATGGGTATGAATCCCCTCCTGGTTTAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CAA 90 bp | TCAGAAGGTGGCATCTGGGTTCCTAATTGTAGGAAGGAGCTGCTTATCTCAGGCTATACACAGCAAAGTTaGCAGGGGAGCCTGAATAAG | + |
|
Preference number: 5 (lower is better) Translates to: SEGGIWVPNCRKELLISGYTQQS*QGSLNK Trigger: CTTATTCAGGCTCCCCTGCAAACTTTGCTGTGTATA...GCCTGAGATAAGCAGCTCCTTCCTACAATTAGGAACCCAGATGCCACCTTCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CAA 90 bp | TATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCACTTCTTCCCGGAGAGTaGCCACAGCACTCTGGATCT | + |
|
Preference number: 5 (lower is better) Translates to: YLKTGKQKHPPKKAWYSSLLPGE*PQHSGS Trigger: AGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAG...TGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CAA 90 bp | TATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCACCGACCCTCTGCCGGTaGCTCTCCTTTTTAATGATG | + |
|
Preference number: 5 (lower is better) Translates to: YLKTGKQKHPPKKAWYSSPTLCR*LSFLMM Trigger: CATCATTAAAAAGGAGAGCAACCGGCAGAGGGTCGG...TGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS-3UTR CAA 90 bp | TATTTGAAAACAGGTAAACAGAAACACCCACCAAAGAAAGCATGGTACAGCTCAAAAGTGTGCTACTTTTaGGAAGTCTTCTTCCAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: YLKTGKQKHPPKKAWYSSKVCYF*EVFFQK Trigger: CTTTTGGAAGAAGACTTCCAAAAAGTAGCACACTTT...TGAGCTGTACCATGCTTTCTTTGGTGGGTGTTTCTGTTTACCTGTTTTCAAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000018744.15 |
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| CDS GCA 72 bp | ATGAGGCTCTACCAGGGCAGTATACACAGCAAAGTTTaGAGGGGAGCCTTTGGCCTGGATATCCCTCAGAGT | + |
|
Preference number: 6 (lower is better) Translates to: MRLYQGSIHSKV*RGAFGLDIPQS Trigger: ACTCTGAGGGATATCCAGGCCAAAGGCTCCCCTGCAAACTTTGCTGTGTATACTGCCCTGGTAGAGCCTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174174.8 |
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