RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SHLD3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000118537

Ensembl transcript IDs: ENSMUST00000133280.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTCTCCTTCACTGTGTGTaGTTGGATAAAGTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPLLHCV*LDKVLQ
Trigger: CTGCAGCACTTTATCCAATCACACACAGTGAAGGAG...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CCA 90 bp CTTAACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCAAATGTGCCGCATTaGTCTGCTCCTTCACTGTGT +
Preference number: 4 (lower is better)
Translates to: LNRRLINIIWNVPELTDKPNVPH*SAPSLC
Trigger: ACACAGTGAAGGAGCAGACCAATGCGGCACATTTGG...CTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTTAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR TCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTAAAGTGCTGCAGTTTTaGGCTAGGCTGAAACTCCAA +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPKVLQF*ARLKLQ
Trigger: TTGGAGTTTCAGCCTAGCTCAAAACTGCAGCACTTT...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR GCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTCCAAGAGATCTACTGTaGAGTCATAGCTCTGGGATT +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPPRDLL*SHSSGI
Trigger: AATCCCAGAGCTATGACTGCACAGTAGATCTCTTGG...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CCA 90 bp CTTAACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGAGGAAAGATCTTTTCTaGACAGTGGCTGCTGGCAAG +
Preference number: 4 (lower is better)
Translates to: LNRRLINIIWNVPELTDKRKDLF*TVAAGK
Trigger: CTTGCCAGCAGCCACTGTCCAGAAAAGATCTTTCCT...CTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR TCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTAGTTTTGAGCTAGGCTaGAACTCCAAGAGATCTACT +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPSFELG*NSKRST
Trigger: AGTAGATCTCTTGGAGTTTCAGCCTAGCTCAAAACT...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR TCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTGTCCATCTTGCTCTATaGAAGGAGTGCAAATGTAGT +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPVHLAL*KECKCS
Trigger: ACTACATTTGCACTCCTTTCATAGAGCAAGATGGAC...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR GCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTTGTGATTGGATAAAGTaGTGCAGTTTTGAGCTAGGC +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPCDWIK*CSFELG
Trigger: GCCTAGCTCAAAACTGCAGCACTTTATCCAATCACA...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CCA 90 bp CTTAACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCAGAACACCCATATTTaGCCTAACTGTCTCTGGATG +
Preference number: 4 (lower is better)
Translates to: LNRRLINIIWNVPELTDKQNTHI*PNCLWM
Trigger: CATCCAGAGACAGTTAGGCCAAATATGGGTGTTCTG...CTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR GCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTCCAGAGTCTGGTTGTTaGAAACACTGTATTCTAAAG +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPPESGC*KHCILK
Trigger: CTTTAGAATACAGTGTTTGCAACAACCAGACTCTGG...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTTTTTTGCCAGCTGTTTaGGATCGTTTTCATATGGTC +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPFLPAV*DRFHMV
Trigger: GACCATATGAAAACGATCCCAAACAGCTGGCAAAAA...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CCA 90 bp CTTAACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGTCTTTCAGGCTTGAGTaGAAGTTTGGACTCATCGTA +
Preference number: 4 (lower is better)
Translates to: LNRRLINIIWNVPELTDKSFRLE*KFGLIV
Trigger: TACGATGAGTCCAAACTTCCACTCAAGCCTGAAAGA...CTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTTAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTATGTCTTCCAGAGTCTaGTTGTTGCAAACACTGTAT +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPMSSRV*LLQTLY
Trigger: ATACAGTGTTTGCAACAACCAGACTCTGGAAGACAT...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTGTAATATTACTTCAGTaGTCATTCTGCAGCTATCCA +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPVILLQ*SFCSYP
Trigger: TGGATAGCTGCAGAATGACCACTGAAGTAATATTAC...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR GCA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTGTCCTTAAACTAGCTTaGAATTTTCTAGACAAAGGA +
Preference number: 4 (lower is better)
Translates to: NRRLINIIWNVPELTDKPVLKLA*NFLDKG
Trigger: TCCTTTGTCTAGAAAATTGCAAGCTAGTTTAAGGAC...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CCA 90 bp CTTAACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGTTCACTGTGTGTGATTaGATAAAGTGCTGCAGTTTT +
Preference number: 4 (lower is better)
Translates to: LNRRLINIIWNVPELTDKFTVCD*IKCCSF
Trigger: AAAACTGCAGCACTTTATCCAATCACACACAGTGAA...CTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTTAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CCA 90 bp CTTAACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGTTTGGACTCATCGTATaGAAACCAAGGAATAAATCT +
Preference number: 4 (lower is better)
Translates to: LNRRLINIIWNVPELTDKFGLIV*KPRNKS
Trigger: AGATTTATTCCTTGGTTTCCATACGATGAGTCCAAA...CTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTTAAG
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS CCA 90 bp CTAGCTTGCAATTTTCTAGACAAAGGAAAGATCTTTTCTGGACAGTaGCTGCTGGCAAGCGAAACACTCCAGGATCTCTGCTTGTGCTGT +
Preference number: 5 (lower is better)
Translates to: LACNFLDKGKIFSGQ*LLASETLQDLCLCC
Trigger: ACAGCACAAGCAGAGATCCTGGAGTGTTTCGCTTGCCAGCAGCCACTGTCCAGAAAAGATCTTTCCTTTGTCTAGAAAATTGCAAGCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS CCA 90 bp CAGCACTTAATATCACAGAACACCCATATTTGGCCTAACTGTCTCTaGATGGTAGCGTTACAAGAAGGGAGTTCATCGCGCCTGATAAGG +
Preference number: 5 (lower is better)
Translates to: QHLISQNTHIWPNCL*MVALQEGSSSRLIR
Trigger: CCTTATCAGGCGCGATGAACTCCCTTCTTGTAACGCTACCATCCAGAGACAGTTAGGCCAAATATGGGTGTTCTGTGATATTAAGTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CAA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTTCCAAATGTGCCGCATaGGTCTGCTCCTTCACTGTG +
Preference number: 5 (lower is better)
Translates to: NRRLINIIWNVPELTDKPSKCAA*VCSFTV
Trigger: CACAGTGAAGGAGCAGACCAATGCGGCACATTTGGA...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS CCA 90 bp TTTCCTACATATTCACAGCACTTAATATCACAGAACACCCATATTTaGCCTAACTGTCTCTGGATGGTAGCGTTACAAGAAGGGAGTTCA +
Preference number: 5 (lower is better)
Translates to: FPTYSQHLISQNTHI*PNCLWMVALQEGSS
Trigger: TGAACTCCCTTCTTGTAACGCTACCATCCAGAGACAGTTAGGCCAAATATGGGTGTTCTGTGATATTAAGTGCTGTGAATATGTAGGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CAA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTCTCCAGGATCTCTGCTaGTGCTGTTTTTCTTTTCCT +
Preference number: 5 (lower is better)
Translates to: NRRLINIIWNVPELTDKPLQDLC*CCFSFP
Trigger: AGGAAAAGAAAAACAGCACAAGCAGAGATCCTGGAG...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CAA 90 bp CTTAACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGGGTAATCTTTCAGGCTaGAGTGGAAGTTTGGACTCA +
Preference number: 5 (lower is better)
Translates to: LNRRLINIIWNVPELTDKGNLSG*SGSLDS
Trigger: TGAGTCCAAACTTCCACTCAAGCCTGAAAGATTACC...CTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CAA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTTCTTCCAGAGTCTGGTaGTTGCAAACACTGTATTCT +
Preference number: 5 (lower is better)
Translates to: NRRLINIIWNVPELTDKPSSRVW*LQTLYS
Trigger: AGAATACAGTGTTTGCAACAACCAGACTCTGGAAGA...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CAA 90 bp CTTAACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCGCCTGATAAGGCGATaGAGTTTTGTCCAAATGTCT +
Preference number: 5 (lower is better)
Translates to: LNRRLINIIWNVPELTDKRLIRR*SFVQMS
Trigger: AGACATTTGGACAAAACTCAATCGCCTTATCAGGCG...CTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS-3UTR CAA 90 bp AACAGAAGGCTAATAAACATAATCTGGAATGTTCCTGAATTGACTGACAAGCCTATTCTAAAGTCCATCTaGCTCTATGAAAGGAGTGCA +
Preference number: 5 (lower is better)
Translates to: NRRLINIIWNVPELTDKPILKSI*LYERSA
Trigger: TGCACTCCTTTCATAGAGCAAGATGGACTTTAGAAT...AGGCTTGTCAGTCAATTCAGGAACATTCCAGATTATGTTTATTAGCCTTCTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS CCA 72 bp ATATCACAGAACACCCATATTTGGCCTAACTGTCTCTaGATGGTAGCGTTACAAGAAGGGAGTTCATCGCGC +
Preference number: 6 (lower is better)
Translates to: ISQNTHIWPNCL*MVALQEGSSSR
Trigger: GCGCGATGAACTCCCTTCTTGTAACGCTACCATCCAGAGACAGTTAGGCCAAATATGGGTGTTCTGTGATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS GCA 72 bp TGGGATTTAACACCAGGTTCTGAGATGGCTAAGTACTaGTTCACGCTCTCAGCAGCCTCTTCAGAAATTACT +
Preference number: 6 (lower is better)
Translates to: WDLTPGSEMAKY*FTLSAASSEIT
Trigger: AGTAATTTCTGAAGAGGCTGCTGAGAGCGTGAAGCAGTACTTAGCCATCTCAGAACCTGGTGTTAAATCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS CCA 72 bp AGGCGATTGAGTTTTGTCCAAATGTCTTCCAGAGTCTaGTTGTTGCAAACACTGTATTCTAAAGTCCATCTT +
Preference number: 6 (lower is better)
Translates to: RRLSFVQMSSRV*LLQTLYSKVHL
Trigger: AAGATGGACTTTAGAATACAGTGTTTGCAACAACCAGACTCTGGAAGACATTTGGACAAAACTCAATCGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS CCA 72 bp TATTCACAGCACTTAATATCACAGAACACCCATATTTaGCCTAACTGTCTCTGGATGGTAGCGTTACAAGAA +
Preference number: 6 (lower is better)
Translates to: YSQHLISQNTHI*PNCLWMVALQE
Trigger: TTCTTGTAACGCTACCATCCAGAGACAGTTAGGCCAAATATGGGTGTTCTGTGATATTAAGTGCTGTGAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS CAA 72 bp ATTACTGGTGGTAATCTTTCAGGCTTGAGTGGAAGTTaGGACTCATCGTATGGAAACCAAGGAATAAATCTT +
Preference number: 6 (lower is better)
Translates to: ITGGNLSGLSGS*DSSYGNQGINL
Trigger: AAGATTTATTCCTTGGTTTCCATACGATGAGTCCAAACTTCCACTCAAGCCTGAAAGATTACCACCAGTAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS CAA 72 bp TCTGGTTGTTGCAAACACTGTATTCTAAAGTCCATCTaGCTCTATGAAAGGAGTGCAAATGTAGTGTCCTTA +
Preference number: 6 (lower is better)
Translates to: SGCCKHCILKSI*LYERSANVVSL
Trigger: TAAGGACACTACATTTGCACTCCTTTCATAGAGCAAGATGGACTTTAGAATACAGTGTTTGCAACAACCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2
CDS TCA 72 bp TTGCAAACACTGTATTCTAAAGTCCATCTTGCTCTATaGAAGGAGTGCAAATGTAGTGTCCTTAAACTAGCT +
Preference number: 6 (lower is better)
Translates to: LQTLYSKVHLAL*KECKCSVLKLA
Trigger: AGCTAGTTTAAGGACACTACATTTGCACTCCTTTCATAGAGCAAGATGGACTTTAGAATACAGTGTTTGCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133280.2