Pregenerated sensors for SHLD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044991Ensembl transcript IDs: ENSMUST00000061891.11, ENSMUST00000110132.3, ENSMUST00000148271.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGGCAAGAAGCTGGGCTGGACTCAACCCTAATTaGGTCAGTAGCAGCCTTGGC | + |
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Preference number: 2 (lower is better) Translates to: ARSPGQHSGAQTKARSWAGLNPN*VSSSLG Trigger: GCCAAGGCTGCTACTGACTCAATTAGGGTTGAGTCC...AGCCCAGCTTCTTGCCTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| 3UTR-3UTR GCA 90 bp | CCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGGCAAGAAGCTGGGCTACTGGAAATAGAAAGATaGCAGAGAAGCCCACATGTA | + |
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Preference number: 2 (lower is better) Translates to: PGPQDSTQEHRLRQEAGLLEIER*QRSPHV Trigger: TACATGTGGGCTTCTCTGGCATCTTTCTATTTCCAG...TAGCCCAGCTTCTTGCCTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| 3UTR GCA 72 bp | GGGGAAGGGATGAAGCCAAGCAGGGAAGTGATTTCCTaGCAAAGTCCCAGCTCTGGCCAGGTCCCCAGGACA | + |
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Preference number: 3 (lower is better) Translates to: GEGMKPSREVIS*QSPSSGQVPRT Trigger: TGTCCTGGGGACCTGGCCAGAGCTGGGACTTTGGCAGGAAATCACTTCCCTGCTTGGCTTCATCCCTTCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| 3UTR CCA 72 bp | AAGATGCCAGAGAAGCCCACATGTACCCATGGACTCTaGGGACCAGGCAACAGCACTTCCTCTCTAGCACTG | + |
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Preference number: 3 (lower is better) Translates to: KMPEKPTCTHGL*GPGNSTSSLAL Trigger: CAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATGGGTACATGTGGGCTTCTCTGGCATCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR TCA 90 bp | AAAGTCCCAGCTCTGGCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGGGTACAGCTCTCTCCTaGCAGGCTGCTGGGTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: KVPALARSPGQHSGAQTKGTALS*QAAGCG Trigger: GCCACACCCAGCAGCCTGTCAGGAGAGAGCTGTACC...CTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGCCAGAGCTGGGACTTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR TCA 90 bp | ATGTACCCATGGACTCTGGGGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCGGTACAGCTCTCTCCTaGCAGGCTGCTGGGTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: MYPWTLGTRQQHFLSSTAGTALS*QAAGCG Trigger: GCCACACCCAGCAGCCTGTCAGGAGAGAGCTGTACC...GGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATGGGTACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | ATGTACCCATGGACTCTGGGGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCTCTCTCCTGACAGGCTaGTGGGTGTGGCTGCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: MYPWTLGTRQQHFLSSTASLLTG*WVWLPG Trigger: CCCAGGCAGCCACACCCAGCAGCCTGTCAGGAGAGA...GGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATGGGTACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | CCAGAGAAGCCCACATGTACCCATGGACTCTGGGGACCAGGCAACAGCACTTCCCGGATCCCCAGAGCCTaGCAGTGGATGGGCAAATGC | + |
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Preference number: 4 (lower is better) Translates to: PEKPTCTHGLWGPGNSTSRIPRA*QWMGKC Trigger: GCATTTGCCCATCCACTGCCAGGCTCTGGGGATCCG...GGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATGGGTACATGTGGGCTTCTCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | GGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCCACATTCACATCAGCAGCATCTCTCCTGACAGGCTaGTGGGTGTGGCTGCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GPGNSTSSLALPTFTSAASLLTG*WVWLPG Trigger: CCCAGGCAGCCACACCCAGCAGCCTGTCAGGAGAGA...TGCTGCTGATGTGAATGTGGGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | ATGTACCCATGGACTCTGGGGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCCGGAGAGCATACCTTTaGCTCTCCTGGCCCTCGAGC | + |
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Preference number: 4 (lower is better) Translates to: MYPWTLGTRQQHFLSSTARRAYL*LSWPSS Trigger: GCTCGAGGGCCAGGAGAGCCAAAGGTATGCTCTCCG...GGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATGGGTACAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | GCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGGCAAGAAGCTGGGCTCGGCTGAAGATGACCTaGGCCATTTGGAAACTGCGG | + |
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Preference number: 4 (lower is better) Translates to: ARSPGQHSGAQTKARSWARLKMT*AIWKLR Trigger: CCGCAGTTTCCAAATGGCCCAGGTCATCTTCAGCCG...AGCCCAGCTTCTTGCCTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR TCA 90 bp | AAAGTCCCAGCTCTGGCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGTGCTGCTTCCCTGGCTaGCTCTCTGGGATGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: KVPALARSPGQHSGAQTKCCFPG*LSGMLH Trigger: ATGAAGCATCCCAGAGAGTCAGCCAGGGAAGCAGCA...CTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGCCAGAGCTGGGACTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | GCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGGCAAGAAGCTGGGCTGGGCCATTTGGAAACTaGGGAGAGCATACCTTTGGC | + |
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Preference number: 4 (lower is better) Translates to: ARSPGQHSGAQTKARSWAGPFGN*GEHTFG Trigger: GCCAAAGGTATGCTCTCCGCAGTTTCCAAATGGCCC...AGCCCAGCTTCTTGCCTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | AAAGTCCCAGCTCTGGCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGGAGTTGCTGCTTCCCTaGCTGACTCTCTGGGATGCT | + |
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Preference number: 4 (lower is better) Translates to: KVPALARSPGQHSGAQTKELLLP*LTLWDA Trigger: AGCATCCCAGAGAGTCAGCCAGGGAAGCAGCAACTC...CTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGCCAGAGCTGGGACTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR TCA 90 bp | ATGTACCCATGGACTCTGGGGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCTGCTGCTTCCCTGGCTaGCTCTCTGGGATGCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: MYPWTLGTRQQHFLSSTACCFPG*LSGMLH Trigger: ATGAAGCATCCCAGAGAGTCAGCCAGGGAAGCAGCA...GGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATGGGTACAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | AAGATGCCAGAGAAGCCCACATGTACCCATGGACTCTGGGGACCAGGCAACAGCGAGTTGCTGCTTCCCTaGCTGACTCTCTGGGATGCT | + |
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Preference number: 4 (lower is better) Translates to: KMPEKPTCTHGLWGPGNSELLLP*LTLWDA Trigger: AGCATCCCAGAGAGTCAGCCAGGGAAGCAGCAACTC...GCTGTTGCCTGGTCCCCAGAGTCCATGGGTACATGTGGGCTTCTCTGGCATCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | CATGGACTCTGGGGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCCACATTCCGGCTGAAGATGACCTaGGCCATTTGGAAACTGCGG | + |
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Preference number: 4 (lower is better) Translates to: HGLWGPGNSTSSLALPTFRLKMT*AIWKLR Trigger: CCGCAGTTTCCAAATGGCCCAGGTCATCTTCAGCCG...GAATGTGGGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | CATGGACTCTGGGGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCCACATTCGGGCCATTTGGAAACTaGGGAGAGCATACCTTTGGC | + |
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Preference number: 4 (lower is better) Translates to: HGLWGPGNSTSSLALPTFGPFGN*GEHTFG Trigger: GCCAAAGGTATGCTCTCCGCAGTTTCCAAATGGCCC...GAATGTGGGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | GCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGGCAAGAAGCTGGGCTCATCCTCTTCTTCATTaGTCTCCAACTGGCCTTTCG | + |
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Preference number: 4 (lower is better) Translates to: ARSPGQHSGAQTKARSWAHPLLH*SPTGLS Trigger: CGAAAGGCCAGTTGGAGACCAATGAAGAAGAGGATG...AGCCCAGCTTCTTGCCTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | AAAGTCCCAGCTCTGGCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGATGACCTGGGCCATTTaGAAACTGCGGAGAGCATAC | + |
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Preference number: 4 (lower is better) Translates to: KVPALARSPGQHSGAQTKMTWAI*KLRRAY Trigger: GTATGCTCTCCGCAGTTTCCAAATGGCCCAGGTCAT...CTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGCCAGAGCTGGGACTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | CCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGGCAAGAAGCTGGGCTAATGACCTGGGCCATTTaGAAACTGCGGAGAGCATAC | + |
|
Preference number: 4 (lower is better) Translates to: PGPQDSTQEHRLRQEAGLMTWAI*KLRRAY Trigger: GTATGCTCTCCGCAGTTTCCAAATGGCCCAGGTCAT...TAGCCCAGCTTCTTGCCTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | ATGTACCCATGGACTCTGGGGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCGCTGACTCTCTGGGATaGTTCATAACTGCTGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: MYPWTLGTRQQHFLSSTAADSLG*FITAGV Trigger: GACACCAGCAGTTATGAAGCATCCCAGAGAGTCAGC...GGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATGGGTACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | CATGGACTCTGGGGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCCACATTCGCTGACTCTCTGGGATaGTTCATAACTGCTGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: HGLWGPGNSTSSLALPTFADSLG*FITAGV Trigger: GACACCAGCAGTTATGAAGCATCCCAGAGAGTCAGC...GAATGTGGGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | AAAGTCCCAGCTCTGGCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGCATCCTCTTCTTCATTaGTCTCCAACTGGCCTTTCG | + |
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Preference number: 4 (lower is better) Translates to: KVPALARSPGQHSGAQTKHPLLH*SPTGLS Trigger: CGAAAGGCCAGTTGGAGACCAATGAAGAAGAGGATG...CTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGCCAGAGCTGGGACTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CCA 90 bp | CTAACAGCTGGAAATAGAAAGATGCCAGAGAAGCCCACATGTACCCATGGACTCCGGAGAGCATACCTTTaGCTCTCCTGGCCCTCGAGC | + |
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Preference number: 4 (lower is better) Translates to: LTAGNRKMPEKPTCTHGLRRAYL*LSWPSS Trigger: GCTCGAGGGCCAGGAGAGCCAAAGGTATGCTCTCCG...GAGTCCATGGGTACATGTGGGCTTCTCTGGCATCTTTCTATTTCCAGCTGTTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | AAAGTCCCAGCTCTGGCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGCAGTGGATGGGCAAATaGTTCATAGAATCTATCCAG | + |
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Preference number: 4 (lower is better) Translates to: KVPALARSPGQHSGAQTKQWMGK*FIESIQ Trigger: CTGGATAGATTCTATGAAGCATTTGCCCATCCACTG...CTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGCCAGAGCTGGGACTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | CCAGAGAAGCCCACATGTACCCATGGACTCTGGGGACCAGGCAACAGCACTTCCTCTTTCATTACAGTCTaGTCCAAGAGGAAACGAATG | + |
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Preference number: 4 (lower is better) Translates to: PEKPTCTHGLWGPGNSTSSFITV*SKRKRM Trigger: CATTCGTTTCCTCTTGGAGCAGACTGTAATGAAAGA...GGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATGGGTACATGTGGGCTTCTCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | GGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCCACATTCACATCAGCAGCATCCCAGGAGCCTTTTTaGTCAGTATTTAGAGAATTG | + |
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Preference number: 4 (lower is better) Translates to: GPGNSTSSLALPTFTSAASQEPF*SVFREL Trigger: CAATTCTCTAAATACTGAGCAAAAAGGCTCCTGGGA...TGCTGCTGATGTGAATGTGGGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | CTAACAGCTGGAAATAGAAAGATGCCAGAGAAGCCCACATGTACCCATGGACTCCAGTGGATGGGCAAATaGTTCATAGAATCTATCCAG | + |
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Preference number: 4 (lower is better) Translates to: LTAGNRKMPEKPTCTHGLQWMGK*FIESIQ Trigger: CTGGATAGATTCTATGAAGCATTTGCCCATCCACTG...GAGTCCATGGGTACATGTGGGCTTCTCTGGCATCTTTCTATTTCCAGCTGTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR GCA 90 bp | CTAACAGCTGGAAATAGAAAGATGCCAGAGAAGCCCACATGTACCCATGGACTCTCTTTCATTACAGTCTaGTCCAAGAGGAAACGAATG | + |
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Preference number: 4 (lower is better) Translates to: LTAGNRKMPEKPTCTHGLSFITV*SKRKRM Trigger: CATTCGTTTCCTCTTGGAGCAGACTGTAATGAAAGA...GAGTCCATGGGTACATGTGGGCTTCTCTGGCATCTTTCTATTTCCAGCTGTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CAA 90 bp | GCCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGGCAAGAAGCTGGGCTCCTCGAGCTCAGAGATaGTCTGAGACAAGCACTGAC | + |
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Preference number: 5 (lower is better) Translates to: ARSPGQHSGAQTKARSWAPRAQR*SETSTD Trigger: GTCAGTGCTTGTCTCAGACAATCTCTGAGCTCGAGG...AGCCCAGCTTCTTGCCTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CAA 90 bp | CCAGGTCCCCAGGACAGCACTCAGGAGCACAGACTAAGGCAAGAAGCTGGGCTAAGAGAACTCAGAGAGTaGCTGCTTCCCTGGCTGACT | + |
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Preference number: 5 (lower is better) Translates to: PGPQDSTQEHRLRQEAGLRELRE*LLPWLT Trigger: AGTCAGCCAGGGAAGCAGCAACTCTCTGAGTTCTCT...TAGCCCAGCTTCTTGCCTTAGTCTGTGCTCCTGAGTGCTGTCCTGGGGACCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CAA 90 bp | AAGATGCCAGAGAAGCCCACATGTACCCATGGACTCTGGGGACCAGGCAACAGCAGAGAACTCAGAGAGTaGCTGCTTCCCTGGCTGACT | + |
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Preference number: 5 (lower is better) Translates to: KMPEKPTCTHGLWGPGNSRELRE*LLPWLT Trigger: AGTCAGCCAGGGAAGCAGCAACTCTCTGAGTTCTCT...GCTGTTGCCTGGTCCCCAGAGTCCATGGGTACATGTGGGCTTCTCTGGCATCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CAA 90 bp | CATGGACTCTGGGGACCAGGCAACAGCACTTCCTCTCTAGCACTGCCCACATTCCCTCGAGCTCAGAGATaGTCTGAGACAAGCACTGAC | + |
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Preference number: 5 (lower is better) Translates to: HGLWGPGNSTSSLALPTFPRAQR*SETSTD Trigger: GTCAGTGCTTGTCTCAGACAATCTCTGAGCTCGAGG...GAATGTGGGCAGTGCTAGAGAGGAAGTGCTGTTGCCTGGTCCCCAGAGTCCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS-3UTR CAA 90 bp | AAGATGCCAGAGAAGCCCACATGTACCCATGGACTCTGGGGACCAGGCAACAGCGATGACCTGGGCCATTaGGAAACTGCGGAGAGCATA | + |
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Preference number: 5 (lower is better) Translates to: KMPEKPTCTHGLWGPGNSDDLGH*ETAESI Trigger: TATGCTCTCCGCAGTTTCCAAATGGCCCAGGTCATC...GCTGTTGCCTGGTCCCCAGAGTCCATGGGTACATGTGGGCTTCTCTGGCATCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS TCA 90 bp | GTCTTTCATTACAGTCTGCTCCAAGAGGAAACGAATGACCTCTCTTaGCAGTCCTGGGGTGGGCTCTTCATCATCTACAGAGCTGCCTTC | + |
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Preference number: 5 (lower is better) Translates to: VFHYSLLQEETNDLS*QSWGGLFIIYRAAF Trigger: GAAGGCAGCTCTGTAGATGATGAAGAGCCCACCCCAGGACTGTCAAGAGAGGTCATTCGTTTCCTCTTGGAGCAGACTGTAATGAAAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS CCA 90 bp | CATAGAATCTATCCAGGGATTTCCGAAGTCCATCCTCTTCTTCATTaGTCTCCAACTGGCCTTTCGAAGAAGGATCAAGCCAGAAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: HRIYPGISEVHPLLH*SPTGLSKKDQARSS Trigger: AGAACTTCTGGCTTGATCCTTCTTCGAAAGGCCAGTTGGAGACCAATGAAGAAGAGGATGGACTTCGGAAATCCCTGGATAGATTCTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 ENSMUST00000148271.8 |
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| CDS GCA 72 bp | GAGCGGATCCCCAGAGCCTGGCAGTGGATGGGCAAATaGTTCATAGAATCTATCCAGGGATTTCCGAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: ERIPRAWQWMGK*FIESIQGFPKS Trigger: GGACTTCGGAAATCCCTGGATAGATTCTATGAAGCATTTGCCCATCCACTGCCAGGCTCTGGGGATCCGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 ENSMUST00000148271.8 |
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| CDS TCA 72 bp | TACAGTCTGCTCCAAGAGGAAACGAATGACCTCTCTTaGCAGTCCTGGGGTGGGCTCTTCATCATCTACAGA | + |
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Preference number: 6 (lower is better) Translates to: YSLLQEETNDLS*QSWGGLFIIYR Trigger: TCTGTAGATGATGAAGAGCCCACCCCAGGACTGTCAAGAGAGGTCATTCGTTTCCTCTTGGAGCAGACTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS TCA 72 bp | AGTCTTTCATTACAGTCTGCTCCAAGAGGAAACGAATaGCCTCTCTTGACAGTCCTGGGGTGGGCTCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: SLSLQSAPRGNE*PLLTVLGWALH Trigger: ATGAAGAGCCCACCCCAGGACTGTCAAGAGAGGTCATTCGTTTCCTCTTGGAGCAGACTGTAATGAAAGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 |
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| CDS CAA 72 bp | CTATCCAGGGATTTCCGAAGTCCATCCTCTTCTTCATaGGTCTCCAACTGGCCTTTCGAAGAAGGATCAAGC | + |
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Preference number: 6 (lower is better) Translates to: LSRDFRSPSSSS*VSNWPFEEGSS Trigger: GCTTGATCCTTCTTCGAAAGGCCAGTTGGAGACCAATGAAGAAGAGGATGGACTTCGGAAATCCCTGGATAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 ENSMUST00000148271.8 |
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| CDS CCA 72 bp | TTCCGAAGTCCATCCTCTTCTTCATTGGTCTCCAACTaGCCTTTCGAAGAAGGATCAAGCCAGAAGTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: FRSPSSSSLVSN*PFEEGSSQKFS Trigger: TGAGAACTTCTGGCTTGATCCTTCTTCGAAAGGCCAGTTGGAGACCAATGAAGAAGAGGATGGACTTCGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 ENSMUST00000148271.8 |
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| CDS CAA 72 bp | GAGTCCCAGGAGCCTTTTTGCTCAGTATTTAGAGAATaGCTATCTGGATCAGTAGTCGAAGAAGAAAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: ESQEPFCSVFRE*LSGSVVEEERK Trigger: TTTCCTTTCTTCTTCGACTACTGATCCAGATAGCAATTCTCTAAATACTGAGCAAAAAGGCTCCTGGGACTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000061891.11 ENSMUST00000110132.3 ENSMUST00000148271.8 |
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