Pregenerated sensors for SHISAL2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042655Ensembl transcript IDs: ENSMUST00000043061.5
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTCTAATAAATGAATTCACTAAAACTGCAGCTGGCCTTGCTTTGTaGGTGACAGATTTTGGGAAAGTGATGTTAGCAGCTGATCTAAAA | + |
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Preference number: 1 (lower is better) Translates to: CLINEFTKTAAGLAL*VTDFGKVMLAADLK Trigger: TTTTAGATCAGCTGCTAACATCACTTTCCCAAAATCTGTCACTCACAAAGCAAGGCCAGCTGCAGTTTTAGTGAATTCATTTATTAGACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| 3UTR-3UTR TCA 90 bp | CAGCACCTTAGTGAGTGTCTAATAAATGAATTCACTAAAACTGCAGCTGGCCTTTCTAAAATGTGTTCTTaGCAAATGTGGTGGCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: QHLSECLINEFTKTAAGLSKMCS*QMWWPR Trigger: TCTGGGCCACCACATTTGTCAAGAACACATTTTAGA...AAGGCCAGCTGCAGTTTTAGTGAATTCATTTATTAGACACTCACTAAGGTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| 3UTR-3UTR CCA 90 bp | CAGCACCTTAGTGAGTGTCTAATAAATGAATTCACTAAAACTGCAGCTGGCCTTGTGAGTGACAGATTTTaGGAAAGTGATGTTAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: QHLSECLINEFTKTAAGLVSDRF*ESDVSS Trigger: GCTGCTAACATCACTTTCCCAAAATCTGTCACTCAC...AAGGCCAGCTGCAGTTTTAGTGAATTCATTTATTAGACACTCACTAAGGTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR GCA 90 bp | TTTGGGAAAGTGATGTTAGCAGCTGATCTAAAATGTGTTCTTGACAAATGTGGTGCCCCATCGCCGCGCTaGGGGCACTGGAAAGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: FGKVMLAADLKCVLDKCGAPSPR*GHWKGS Trigger: GGAGCCTTTCCAGTGCCCGCAGCGCGGCGATGGGGC...ACCACATTTGTCAAGAACACATTTTAGATCAGCTGCTAACATCACTTTCCCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR TCA 90 bp | CAGCACCTTAGTGAGTGTCTAATAAATGAATTCACTAAAACTGCAGCTGGCCTTCCACGAAGCTGCGGTTaGGGCTGTAGTAGCCCGAGC | + |
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Preference number: 4 (lower is better) Translates to: QHLSECLINEFTKTAAGLPRSCG*GCSSPS Trigger: GCTCGGGCTACTACAGCCTCAACCGCAGCTTCGTGG...AAGGCCAGCTGCAGTTTTAGTGAATTCATTTATTAGACACTCACTAAGGTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR GCA 90 bp | CAGCACCTTAGTGAGTGTCTAATAAATGAATTCACTAAAACTGCAGCTGGCCTTTGTAGGGGAAGTAGCTaGCCGGCTCGCTGCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: QHLSECLINEFTKTAAGLCRGSS*PARCSS Trigger: ACTGCTGCAGCGAGCCGGGCAGCTACTTCCCCTACA...AAGGCCAGCTGCAGTTTTAGTGAATTCATTTATTAGACACTCACTAAGGTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR CCA 90 bp | TTTGGGAAAGTGATGTTAGCAGCTGATCTAAAATGTGTTCTTGACAAATGTGGTCCGCGCTGCGGGCACTaGAAAGGCTCCACGAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: FGKVMLAADLKCVLDKCGPRCGH*KGSTKL Trigger: CAGCTTCGTGGAGCCTTTCCAGTGCCCGCAGCGCGG...ACCACATTTGTCAAGAACACATTTTAGATCAGCTGCTAACATCACTTTCCCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR TCA 90 bp | CTAAAATGTGTTCTTGACAAATGTGGTGGCCCAGACCTTAAACCTCAGCACTCACCAGAGCACCAATACTaGGGCTCCACATGTAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LKCVLDKCGGPDLKPQHSPEHQY*GSTCSC Trigger: ACAGCTACATGTGGAGCCTCAGTATTGGTGCTCTGG...TGAGTGCTGAGGTTTAAGGTCTGGGCCACCACATTTGTCAAGAACACATTTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR TCA 90 bp | CTAAAATGTGTTCTTGACAAATGTGGTGGCCCAGACCTTAAACCTCAGCACTCAAATTTGATACTGCATTaGGGCCTTTGGCTTTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: LKCVLDKCGGPDLKPQHSNLILH*GLWLFC Trigger: ACAGAAAAGCCAAAGGCCTCAATGCAGTATCAAATT...TGAGTGCTGAGGTTTAAGGTCTGGGCCACCACATTTGTCAAGAACACATTTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR CAA 90 bp | CAGCACCTTAGTGAGTGTCTAATAAATGAATTCACTAAAACTGCAGCTGGCCTTTCGCTGCAGCAGTACTaGAGGTCTGCGAAGCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: QHLSECLINEFTKTAAGLSLQQY*RSAKPQ Trigger: CTGCGGCTTCGCAGACCTCAAGTACTGCTGCAGCGA...AAGGCCAGCTGCAGTTTTAGTGAATTCATTTATTAGACACTCACTAAGGTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR CAA 90 bp | CTAAAATGTGTTCTTGACAAATGTGGTGGCCCAGACCTTAAACCTCAGCACTCAGAATTTGATACTGCATaGAGGCCTTTGGCTTTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: LKCVLDKCGGPDLKPQHSEFDTA*RPLAFL Trigger: CAGAAAAGCCAAAGGCCTCAATGCAGTATCAAATTC...TGAGTGCTGAGGTTTAAGGTCTGGGCCACCACATTTGTCAAGAACACATTTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR CAA 90 bp | CTAAAATGTGTTCTTGACAAATGTGGTGGCCCAGACCTTAAACCTCAGCACTCAGCTTTTCTGTTTATGTaGCCTTCTAGGGTAGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: LKCVLDKCGGPDLKPQHSAFLFM*PSRVED Trigger: ATCTTCTACCCTAGAAGGCAACATAAACAGAAAAGC...TGAGTGCTGAGGTTTAAGGTCTGGGCCACCACATTTGTCAAGAACACATTTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR CAA 90 bp | CAGCACCTTAGTGAGTGTCTAATAAATGAATTCACTAAAACTGCAGCTGGCCTTATCCATTGTTTTCTCTaGAGTCCCATCGTCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: QHLSECLINEFTKTAAGLIHCFL*SPIVSF Trigger: GAAGCTGACGATGGGACTCAAGAGAAAACAATGGAT...AAGGCCAGCTGCAGTTTTAGTGAATTCATTTATTAGACACTCACTAAGGTGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS-3UTR CAA 90 bp | CAGCACCTTAGTGAGTGTCTAATAAATGAATTCACTAAAACTGCAGCTGGCCTTACTGCATTGAGGCCTTaGGCTTTTCTGTTTATGTTG | + |
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Preference number: 5 (lower is better) Translates to: QHLSECLINEFTKTAAGLTALRP*AFLFML Trigger: CAACATAAACAGAAAAGCCAAAGGCCTCAATGCAGT...AAGGCCAGCTGCAGTTTTAGTGAATTCATTTATTAGACACTCACTAAGGTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS TCA 72 bp | GCTGCGGGCACTGGAAAGGCTCCACGAAGCTGCGGTTaGGGCTGTAGTAGCCCGAGCACAGGCGGCTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: AAGTGKAPRSCG*GCSSPSTGGCS Trigger: AGAGCAGCCGCCTGTGCTCGGGCTACTACAGCCTCAACCGCAGCTTCGTGGAGCCTTTCCAGTGCCCGCAGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS CAA 72 bp | GTCTCATTTGTTGAATTTGATACTGCATTGAGGCCTTaGGCTTTTCTGTTTATGTTGCCTTCTAGGGTAGAA | + |
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Preference number: 6 (lower is better) Translates to: VSFVEFDTALRP*AFLFMLPSRVE Trigger: TTCTACCCTAGAAGGCAACATAAACAGAAAAGCCAAAGGCCTCAATGCAGTATCAAATTCAACAAATGAGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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| CDS CAA 72 bp | GGCAATATTGATTTGTGTTATATCCATTGTTTTCTCTaGAGTCCCATCGTCAGCTTCATAGAAGGTCTCATT | + |
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Preference number: 6 (lower is better) Translates to: GNIDLCYIHCFL*SPIVSFIEGLI Trigger: AATGAGACCTTCTATGAAGCTGACGATGGGACTCAAGAGAAAACAATGGATATAACACAAATCAATATTGCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043061.5 |
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