RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SHISAL2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059816

Ensembl transcript IDs: ENSMUST00000053157.7

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GTGGTCGCGGAAGCCACAGCAGAAGACAGCAGCCGCTTCGCCCCCTaGCAGCGGGCAGCTGAAGCCGCGCACCACCTCCTGCTCAGCGCT +
Preference number: 5 (lower is better)
Translates to: VVAEATAEDSSRFAP*QRAAEAAHHLLLSA
Trigger: AGCGCTGAGCAGGAGGTGGTGCGCGGCTTCAGCTGCCCGCTGCCAGGGGGCGAAGCGGCTGCTGTCTTCTGCTGTGGCTTCCGCGACCAC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS TCA 90 bp CACAGCAGAAGACAGCAGCCGCTTCGCCCCCTGGCAGCGGGCAGCTaGAGCCGCGCACCACCTCCTGCTCAGCGCTCACGTAGCTCGAGC +
Preference number: 5 (lower is better)
Translates to: HSRRQQPLRPLAAGS*SRAPPPAQRSRSSS
Trigger: GCTCGAGCTACGTGAGCGCTGAGCAGGAGGTGGTGCGCGGCTTCAGCTGCCCGCTGCCAGGGGGCGAAGCGGCTGCTGTCTTCTGCTGTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS GCA 90 bp ACAGAGCACACAGGCAGTGATGAGGAAGGCCAGAAGGACCACTGCTaGCGTGGACAGGCCCACGAGCGCTCCGATGCTGAGCCACCACAT +
Preference number: 5 (lower is better)
Translates to: TEHTGSDEEGQKDHC*RGQAHERSDAEPPH
Trigger: ATGTGGTGGCTCAGCATCGGAGCGCTCGTGGGCCTGTCCACGGCAGCAGTGGTCCTTCTGGCCTTCCTCATCACTGCCTGTGTGCTCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS GCA 90 bp GTAACAGAGCACACAGGCAGTGATGAGGAAGGCCAGAAGGACCACTaGTGCCGTGGACAGGCCCACGAGCGCTCCGATGCTGAGCCACCA +
Preference number: 5 (lower is better)
Translates to: VTEHTGSDEEGQKDH*CRGQAHERSDAEPP
Trigger: TGGTGGCTCAGCATCGGAGCGCTCGTGGGCCTGTCCACGGCAGCAGTGGTCCTTCTGGCCTTCCTCATCACTGCCTGTGTGCTCTGTTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 90 bp TCCGTGTGGGCCAGGGGTGGGGACAGAGATCTCGTCAGGACTGCCTaGAATGTTGCTAGCAGTCACTGTGGCCATGAACTGGTTCTGGGG +
Preference number: 5 (lower is better)
Translates to: SVWARGGDRDLVRTA*NVASSHCGHELVLG
Trigger: CCCCAGAACCAGTTCATGGCCACAGTGACTGCTAGCAACATTCCAGGCAGTCCTGACGAGATCTCTGTCCCCACCCCTGGCCCACACGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS TCA 90 bp GCTCACGGTCTGCTTCTTGTTGCTTTCCAGATGTGTGTTCGAGGATaGACTCTGCCGGGGAGAGCTTACCCCTGGTACCTCCATCGGGAT +
Preference number: 5 (lower is better)
Translates to: AHGLLLVAFQMCVRG*TLPGRAYPWYLHRD
Trigger: ATCCCGATGGAGGTACCAGGGGTAAGCTCTCCCCGGCAGAGTTCATCCTCGAACACACATCTGGAAAGCAACAAGAAGCAGACCGTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 90 bp CTGCCTGGAATGTTGCTAGCAGTCACTGTGGCCATGAACTGGTTCTaGGGGAGACATGTGGGGCTCACGGTCTGCTTCTTGTTGCTTTCC +
Preference number: 5 (lower is better)
Translates to: LPGMLLAVTVAMNWF*GRHVGLTVCFLLLS
Trigger: GGAAAGCAACAAGAAGCAGACCGTGAGCCCCACATGTCTCCCCCAGAACCAGTTCATGGCCACAGTGACTGCTAGCAACATTCCAGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 90 bp TCAGGACTGCCTGGAATGTTGCTAGCAGTCACTGTGGCCATGAACTaGTTCTGGGGGAGACATGTGGGGCTCACGGTCTGCTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: SGLPGMLLAVTVAMN*FWGRHVGLTVCFLL
Trigger: CAACAAGAAGCAGACCGTGAGCCCCACATGTCTCCCCCAGAACCAGTTCATGGCCACAGTGACTGCTAGCAACATTCCAGGCAGTCCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS GCA 90 bp GTCTGCTTCTTGTTGCTTTCCAGATGTGTGTTCGAGGATGAACTCTaGCGGGGAGAGCTTACCCCTGGTACCTCCATCGGGATTGCTGTG +
Preference number: 5 (lower is better)
Translates to: VCFLLLSRCVFEDEL*RGELTPGTSIGIAV
Trigger: CACAGCAATCCCGATGGAGGTACCAGGGGTAAGCTCTCCCCGGCAGAGTTCATCCTCGAACACACATCTGGAAAGCAACAAGAAGCAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS GCA 90 bp GTGGCCATGAACTGGTTCTGGGGGAGACATGTGGGGCTCACGGTCTaGTTCTTGTTGCTTTCCAGATGTGTGTTCGAGGATGAACTCTGC +
Preference number: 5 (lower is better)
Translates to: VAMNWFWGRHVGLTV*FLLLSRCVFEDELC
Trigger: GCAGAGTTCATCCTCGAACACACATCTGGAAAGCAACAAGAAGCAGACCGTGAGCCCCACATGTCTCCCCCAGAACCAGTTCATGGCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 90 bp TCGGGATTGCTGTGTTCAAACCATGGTGGTCAGGTGACATCTCCTTaGAGCCTGTTGTCTGCAAGCTTAAGCCGGGGTCCAGCTTGGTCT +
Preference number: 5 (lower is better)
Translates to: SGLLCSNHGGQVTSP*SLLSASLSRGPAWS
Trigger: AGACCAAGCTGGACCCCGGCTTAAGCTTGCAGACAACAGGCTCCAAGGAGATGTCACCTGACCACCATGGTTTGAACACAGCAATCCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 90 bp GAGCTTACCCCTGGTACCTCCATCGGGATTGCTGTGTTCAAACCATaGTGGTCAGGTGACATCTCCTTGGAGCCTGTTGTCTGCAAGCTT +
Preference number: 5 (lower is better)
Translates to: ELTPGTSIGIAVFKP*WSGDISLEPVVCKL
Trigger: AAGCTTGCAGACAACAGGCTCCAAGGAGATGTCACCTGACCACCATGGTTTGAACACAGCAATCCCGATGGAGGTACCAGGGGTAAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS TCA 72 bp AGACAGCAGCCGCTTCGCCCCCTGGCAGCGGGCAGCTaGAGCCGCGCACCACCTCCTGCTCAGCGCTCACGT +
Preference number: 6 (lower is better)
Translates to: RQQPLRPLAAGS*SRAPPPAQRSR
Trigger: ACGTGAGCGCTGAGCAGGAGGTGGTGCGCGGCTTCAGCTGCCCGCTGCCAGGGGGCGAAGCGGCTGCTGTCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 72 bp GAAGCCACAGCAGAAGACAGCAGCCGCTTCGCCCCCTaGCAGCGGGCAGCTGAAGCCGCGCACCACCTCCTG +
Preference number: 6 (lower is better)
Translates to: EATAEDSSRFAP*QRAAEAAHHLL
Trigger: CAGGAGGTGGTGCGCGGCTTCAGCTGCCCGCTGCCAGGGGGCGAAGCGGCTGCTGTCTTCTGCTGTGGCTTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS GCA 72 bp ACAGGCAGTGATGAGGAAGGCCAGAAGGACCACTGCTaGCGTGGACAGGCCCACGAGCGCTCCGATGCTGAG +
Preference number: 6 (lower is better)
Translates to: TGSDEEGQKDHC*RGQAHERSDAE
Trigger: CTCAGCATCGGAGCGCTCGTGGGCCTGTCCACGGCAGCAGTGGTCCTTCTGGCCTTCCTCATCACTGCCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS TCA 72 bp CTGCTGCCGTGGACAGGCCCACGAGCGCTCCGATGCTaGGCCACCACATGTAGTTGTGCTCGTAGGGGAAGA +
Preference number: 6 (lower is better)
Translates to: LLPWTGPRALRC*ATTCSCARRGR
Trigger: TCTTCCCCTACGAGCACAACTACATGTGGTGGCTCAGCATCGGAGCGCTCGTGGGCCTGTCCACGGCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 72 bp CCTGGAATGTTGCTAGCAGTCACTGTGGCCATGAACTaGTTCTGGGGGAGACATGTGGGGCTCACGGTCTGC +
Preference number: 6 (lower is better)
Translates to: PGMLLAVTVAMN*FWGRHVGLTVC
Trigger: GCAGACCGTGAGCCCCACATGTCTCCCCCAGAACCAGTTCATGGCCACAGTGACTGCTAGCAACATTCCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CAA 90 bp ATGAACTCTGCCGGGGAGAGCTTACCCCTGGTACCTCCATCGGGATaGCTGTGTTCAAACCATGGTGGTCAGGTGACATCTCCTTGGAGC +
Preference number: 6 (lower is better)
Translates to: MNSAGESLPLVPPSG*LCSNHGGQVTSPWS
Trigger: GCTCCAAGGAGATGTCACCTGACCACCATGGTTTGAACACAGCAATCCCGATGGAGGTACCAGGGGTAAGCTCTCCCCGGCAGAGTTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS GCA 72 bp TTGTTGCTTTCCAGATGTGTGTTCGAGGATGAACTCTaGCGGGGAGAGCTTACCCCTGGTACCTCCATCGGG +
Preference number: 6 (lower is better)
Translates to: LLLSRCVFEDEL*RGELTPGTSIG
Trigger: CCCGATGGAGGTACCAGGGGTAAGCTCTCCCCGGCAGAGTTCATCCTCGAACACACATCTGGAAAGCAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS GCA 72 bp GGGGGAGACATGTGGGGCTCACGGTCTGCTTCTTGTTaGTTTCCAGATGTGTGTTCGAGGATGAACTCTGCC +
Preference number: 6 (lower is better)
Translates to: GGDMWGSRSASC*FPDVCSRMNSA
Trigger: GGCAGAGTTCATCCTCGAACACACATCTGGAAAGCAACAAGAAGCAGACCGTGAGCCCCACATGTCTCCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 72 bp ATGTTGCTAGCAGTCACTGTGGCCATGAACTGGTTCTaGGGGAGACATGTGGGGCTCACGGTCTGCTTCTTG +
Preference number: 6 (lower is better)
Translates to: MLLAVTVAMNWF*GRHVGLTVCFL
Trigger: CAAGAAGCAGACCGTGAGCCCCACATGTCTCCCCCAGAACCAGTTCATGGCCACAGTGACTGCTAGCAACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CAA 72 bp AACCATGGTGGTCAGGTGACATCTCCTTGGAGCCTGTaGTCTGCAAGCTTAAGCCGGGGTCCAGCTTGGTCT +
Preference number: 6 (lower is better)
Translates to: NHGGQVTSPWSL*SASLSRGPAWS
Trigger: AGACCAAGCTGGACCCCGGCTTAAGCTTGCAGACAACAGGCTCCAAGGAGATGTCACCTGACCACCATGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CAA 72 bp GCTGTGTTCAAACCATGGTGGTCAGGTGACATCTCCTaGGAGCCTGTTGTCTGCAAGCTTAAGCCGGGGTCC +
Preference number: 6 (lower is better)
Translates to: AVFKPWWSGDIS*EPVVCKLKPGS
Trigger: GGACCCCGGCTTAAGCTTGCAGACAACAGGCTCCAAGGAGATGTCACCTGACCACCATGGTTTGAACACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CAA 72 bp GTGGGGACAGAGATCTCGTCAGGACTGCCTGGAATGTaGCTAGCAGTCACTGTGGCCATGAACTGGTTCTGG +
Preference number: 6 (lower is better)
Translates to: VGTEISSGLPGM*LAVTVAMNWFW
Trigger: CCAGAACCAGTTCATGGCCACAGTGACTGCTAGCAACATTCCAGGCAGTCCTGACGAGATCTCTGTCCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CAA 90 bp CTGTGTTCAAACCATGGTGGTCAGGTGACATCTCCTTGGAGCCTGTaGTCTGCAAGCTTAAGCCGGGGTCCAGCTTGGTCTGAGGCTTTG +
Preference number: 6 (lower is better)
Translates to: LCSNHGGQVTSPWSL*SASLSRGPAWSEAL
Trigger: CAAAGCCTCAGACCAAGCTGGACCCCGGCTTAAGCTTGCAGACAACAGGCTCCAAGGAGATGTCACCTGACCACCATGGTTTGAACACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CAA 90 bp ATCGGGATTGCTGTGTTCAAACCATGGTGGTCAGGTGACATCTCCTaGGAGCCTGTTGTCTGCAAGCTTAAGCCGGGGTCCAGCTTGGTC +
Preference number: 6 (lower is better)
Translates to: IGIAVFKPWWSGDIS*EPVVCKLKPGSSLV
Trigger: GACCAAGCTGGACCCCGGCTTAAGCTTGCAGACAACAGGCTCCAAGGAGATGTCACCTGACCACCATGGTTTGAACACAGCAATCCCGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS TCA 72 bp CTGCTTCTTGTTGCTTTCCAGATGTGTGTTCGAGGATaGACTCTGCCGGGGAGAGCTTACCCCTGGTACCTC +
Preference number: 6 (lower is better)
Translates to: LLLVAFQMCVRG*TLPGRAYPWYL
Trigger: GAGGTACCAGGGGTAAGCTCTCCCCGGCAGAGTTCATCCTCGAACACACATCTGGAAAGCAACAAGAAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 72 bp CTGTGTTCAAACCATGGTGGTCAGGTGACATCTCCTTaGAGCCTGTTGTCTGCAAGCTTAAGCCGGGGTCCA +
Preference number: 6 (lower is better)
Translates to: LCSNHGGQVTSP*SLLSASLSRGP
Trigger: TGGACCCCGGCTTAAGCTTGCAGACAACAGGCTCCAAGGAGATGTCACCTGACCACCATGGTTTGAACACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 72 bp GGTACCTCCATCGGGATTGCTGTGTTCAAACCATGGTaGTCAGGTGACATCTCCTTGGAGCCTGTTGTCTGC +
Preference number: 6 (lower is better)
Translates to: GTSIGIAVFKPW*SGDISLEPVVC
Trigger: GCAGACAACAGGCTCCAAGGAGATGTCACCTGACCACCATGGTTTGAACACAGCAATCCCGATGGAGGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CCA 72 bp CCTGGTACCTCCATCGGGATTGCTGTGTTCAAACCATaGTGGTCAGGTGACATCTCCTTGGAGCCTGTTGTC +
Preference number: 6 (lower is better)
Translates to: PGTSIGIAVFKP*WSGDISLEPVV
Trigger: GACAACAGGCTCCAAGGAGATGTCACCTGACCACCATGGTTTGAACACAGCAATCCCGATGGAGGTACCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CAA 72 bp TGGGGGAGACATGTGGGGCTCACGGTCTGCTTCTTGTaGCTTTCCAGATGTGTGTTCGAGGATGAACTCTGC +
Preference number: 6 (lower is better)
Translates to: WGRHVGLTVCFL*LSRCVFEDELC
Trigger: GCAGAGTTCATCCTCGAACACACATCTGGAAAGCAACAAGAAGCAGACCGTGAGCCCCACATGTCTCCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS GCA 72 bp AACTGGTTCTGGGGGAGACATGTGGGGCTCACGGTCTaGTTCTTGTTGCTTTCCAGATGTGTGTTCGAGGAT +
Preference number: 6 (lower is better)
Translates to: NWFWGRHVGLTV*FLLLSRCVFED
Trigger: ATCCTCGAACACACATCTGGAAAGCAACAAGAAGCAGACCGTGAGCCCCACATGTCTCCCCCAGAACCAGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7
CDS CAA 72 bp TTCTGGGGGAGACATGTGGGGCTCACGGTCTGCTTCTaGTTGCTTTCCAGATGTGTGTTCGAGGATGAACTC +
Preference number: 6 (lower is better)
Translates to: FWGRHVGLTVCF*LLSRCVFEDEL
Trigger: GAGTTCATCCTCGAACACACATCTGGAAAGCAACAAGAAGCAGACCGTGAGCCCCACATGTCTCCCCCAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053157.7