Pregenerated sensors for SHISA8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096883Ensembl transcript IDs: ENSMUST00000179269.3, ENSMUST00000229543.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGCGCCGACAGTACCCTGGGCCTCAGCCAGGTACTGGGAGCCTCTaGCAGGAAGAGGGAGAGAGCTGGCGGGGGCCAAGCCTGTGCATG | + |
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Preference number: 1 (lower is better) Translates to: RRRQYPGPQPGTGSL*QEEGESWRGPSLCM Trigger: CATGCACAGGCTTGGCCCCCGCCAGCTCTCTCCCTCTTCCTGCCAGAGGCTCCCAGTACCTGGCTGAGGCCCAGGGTACTGTCGGCGCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR TCA 90 bp | ACCTGGCTTAGCCAGGCTGTCCCCACACACACCAGAACATGGAACTaGGGACCTTGCAATCAGGCGCCGACAGTACCCTGGGCCTCAGCC | + |
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Preference number: 1 (lower is better) Translates to: TWLSQAVPTHTRTWN*GPCNQAPTVPWASA Trigger: GGCTGAGGCCCAGGGTACTGTCGGCGCCTGATTGCAAGGTCCTCAGTTCCATGTTCTGGTGTGTGTGGGGACAGCCTGGCTAAGCCAGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CCA 90 bp | GGAGCCGGCCCAGGGCCAGACTGTGTCAATGACGATCAGCCAGGCTaGGCTAACTCAAAACTGTTGAGTGAGAGATCAGCTGCGGGCTGG | + |
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Preference number: 1 (lower is better) Translates to: GAGPGPDCVNDDQPG*ANSKLLSERSAAGW Trigger: CCAGCCCGCAGCTGATCTCTCACTCAACAGTTTTGAGTTAGCCCAGCCTGGCTGATCGTCATTGACACAGTCTGGCCCTGGGCCGGCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CCA 90 bp | CTGTTGTTCAGACAGCGTGCCATCCCTGGGGGACAGTGCCATCCCTaGGGAACACAGGGAGTGGTTTCGCTGAGGTCGTATACCTCACCT | + |
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Preference number: 1 (lower is better) Translates to: LLFRQRAIPGGQCHP*GTQGVVSLRSYTSP Trigger: AGGTGAGGTATACGACCTCAGCGAAACCACTCCCTGTGTTCCCCAGGGATGGCACTGTCCCCCAGGGATGGCACGCTGTCTGAACAACAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CCA 90 bp | GAACCCAGACCTTTGGATGACAGTGGCTCCATCTGCCCTGAGCATTaGTTGGCATTCGACCCAGCCATCCTCTCTGGCCACTTCTCTCCA | + |
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Preference number: 1 (lower is better) Translates to: EPRPLDDSGSICPEH*LAFDPAILSGHFSP Trigger: TGGAGAGAAGTGGCCAGAGAGGATGGCTGGGTCGAATGCCAACCAATGCTCAGGGCAGATGGAGCCACTGTCATCCAAAGGTCTGGGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR GCA 90 bp | ACAGGCTCTGAATGTCCTTGTTCCTGCTTGGATTCAAGCCTGCAGTaGAATTTCACGACCTGGGGCCCAGGACCCTGCAGAAGGCTCCAA | + |
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Preference number: 1 (lower is better) Translates to: TGSECPCSCLDSSLQ*NFTTWGPGPCRRLQ Trigger: TTGGAGCCTTCTGCAGGGTCCTGGGCCCCAGGTCGTGAAATTGCACTGCAGGCTTGAATCCAAGCAGGAACAAGGACATTCAGAGCCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CCA 90 bp | CCAGACCTTTGGATGACAGTGGCTCCATCTGCCCTGAGCATTGGTTaGCATTCGACCCAGCCATCCTCTCTGGCCACTTCTCTCCAGTTT | + |
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Preference number: 1 (lower is better) Translates to: PDLWMTVAPSALSIG*HSTQPSSLATSLQF Trigger: AAACTGGAGAGAAGTGGCCAGAGAGGATGGCTGGGTCGAATGCCAACCAATGCTCAGGGCAGATGGAGCCACTGTCATCCAAAGGTCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR GCA 90 bp | TACCCTTTTGGCCCTTTAGCCACAGGCTCTGAATGTCCTTGTTCCTaGTTGGATTCAAGCCTGCAGTGCAATTTCACGACCTGGGGCCCA | + |
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Preference number: 1 (lower is better) Translates to: YPFGPLATGSECPCS*LDSSLQCNFTTWGP Trigger: TGGGCCCCAGGTCGTGAAATTGCACTGCAGGCTTGAATCCAAGCAGGAACAAGGACATTCAGAGCCTGTGGCTAAAGGGCCAAAAGGGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CCA 90 bp | TTTGCACTGCTGTCTGCCCAGTCAATGACTGATGATCGATCCCCTTaGGACAGGAACCACATTAGAGGGTTTATTTACACAGGTAAGGAT | + |
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Preference number: 1 (lower is better) Translates to: FALLSAQSMTDDRSP*DRNHIRGFIYTGKD Trigger: ATCCTTACCTGTGTAAATAAACCCTCTAATGTGGTTCCTGTCCCAAGGGGATCGATCATCAGTCATTGACTGGGCAGACAGCAGTGCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR-3UTR CCA 90 bp | GGTGGCCCTGGGCCAATCTGGCCAAGCAGCCTGCAAGCCAGGAGCCGGCCCAGGCTGGCCCTACCCTTTTaGCCCTTTAGCCACAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: GGPGPIWPSSLQARSRPRLALPF*PFSHRL Trigger: GAGCCTGTGGCTAAAGGGCCAAAAGGGTAGGGCCAG...CCTGGGCCGGCTCCTGGCTTGCAGGCTGCTTGGCCAGATTGGCCCAGGGCCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR-3UTR GCA 90 bp | GGTGGCCCTGGGCCAATCTGGCCAAGCAGCCTGCAAGCCAGGAGCCGGCCCAGGGATTCAAGCCTGCAGTaGAATTTCACGACCTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: GGPGPIWPSSLQARSRPRDSSLQ*NFTTWG Trigger: GCCCCAGGTCGTGAAATTGCACTGCAGGCTTGAATC...CCTGGGCCGGCTCCTGGCTTGCAGGCTGCTTGGCCAGATTGGCCCAGGGCCACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR-3UTR GCA 90 bp | GTGGCCCTGGGCCAATCTGGCCAAGCAGCCTGCAAGCCAGGAGCCGGCCCAGGGGAATGTCCTTGTTCCTaGTTGGATTCAAGCCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: VALGQSGQAACKPGAGPGECPCS*LDSSLQ Trigger: CTGCAGGCTTGAATCCAAGCAGGAACAAGGACATTC...CCCTGGGCCGGCTCCTGGCTTGCAGGCTGCTTGGCCAGATTGGCCCAGGGCCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR-3UTR CCA 90 bp | GAGGTCGTATACCTCACCTGGCTTAGCCAGGCTGTCCCCACACACACCAGAACAGGAGGGGCTAGGCTCTaGTGGAGCCCAGGAACCCCC | + |
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Preference number: 2 (lower is better) Translates to: EVVYLTWLSQAVPTHTRTGGARL*WSPGTP Trigger: GGGGGTTCCTGGGCTCCACCAGAGCCTAGCCCCTCC...TGTTCTGGTGTGTGTGGGGACAGCCTGGCTAAGCCAGGTGAGGTATACGACCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CAA 90 bp | CCTTTTGGCCCTTTAGCCACAGGCTCTGAATGTCCTTGTTCCTGCTaGGATTCAAGCCTGCAGTGCAATTTCACGACCTGGGGCCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: PFGPLATGSECPCSC*DSSLQCNFTTWGPG Trigger: TCCTGGGCCCCAGGTCGTGAAATTGCACTGCAGGCTTGAATCCAAGCAGGAACAAGGACATTCAGAGCCTGTGGCTAAAGGGCCAAAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR-3UTR CCA 90 bp | GAGGTCGTATACCTCACCTGGCTTAGCCAGGCTGTCCCCACACACACCAGAACAGTCCTTGTTCCTGCTTaGATTCAAGCCTGCAGTGCA | + |
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Preference number: 2 (lower is better) Translates to: EVVYLTWLSQAVPTHTRTVLVPA*IQACSA Trigger: TGCACTGCAGGCTTGAATCCAAGCAGGAACAAGGAC...TGTTCTGGTGTGTGTGGGGACAGCCTGGCTAAGCCAGGTGAGGTATACGACCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR-3UTR CCA 90 bp | TTAGAGGGTTTATTTACACAGGTAAGGATAGCCCTACATTCCCAAGGACAGAACTGCAATTTCACGACCTaGGGCCCAGGACCCTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: LEGLFTQVRIALHSQGQNCNFTT*GPGPCR Trigger: TCTGCAGGGTCCTGGGCCCCAGGTCGTGAAATTGCA...GTTCTGTCCTTGGGAATGTAGGGCTATCCTTACCTGTGTAAATAAACCCTCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR-3UTR CAA 90 bp | CTGGCCAAGCAGCCTGCAAGCCAGGAGCCGGCCCAGGGCCAGACTGTGTCAATGTGTCCTTGTTCCTGCTaGGATTCAAGCCTGCAGTGC | + |
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Preference number: 3 (lower is better) Translates to: LAKQPASQEPAQGQTVSMCPCSC*DSSLQC Trigger: GCACTGCAGGCTTGAATCCAAGCAGGAACAAGGACA...CATTGACACAGTCTGGCCCTGGGCCGGCTCCTGGCTTGCAGGCTGCTTGGCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CCA 72 bp | CATAAGGTAGCTGTTGTTCAGACAGCGTGCCATCCCTaGGGGACAGTGCCATCCCTGGGGAACACAGGGAGT | + |
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Preference number: 3 (lower is better) Translates to: HKVAVVQTACHP*GTVPSLGNTGS Trigger: ACTCCCTGTGTTCCCCAGGGATGGCACTGTCCCCCAGGGATGGCACGCTGTCTGAACAACAGCTACCTTATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR-3UTR CAA 90 bp | CATAAGGTAGCTGTTGTTCAGACAGCGTGCCATCCCTGGGGGACAGTGCCATCCCCACTTCTCTCCAGTTaGCACTGCTGTCTGCCCAGT | + |
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Preference number: 3 (lower is better) Translates to: HKVAVVQTACHPWGTVPSPLLSS*HCCLPS Trigger: ACTGGGCAGACAGCAGTGCAAACTGGAGAGAAGTGG...GGATGGCACTGTCCCCCAGGGATGGCACGCTGTCTGAACAACAGCTACCTTATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR-3UTR CAA 90 bp | AGGCTGTCCCCACACACACCAGAACATGGAACTGAGGACCTTGCAATCAGGCGCCCAGAACCCAGACCTTaGGATGACAGTGGCTCCATC | + |
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Preference number: 3 (lower is better) Translates to: RLSPHTPEHGTEDLAIRRPEPRP*DDSGSI Trigger: GATGGAGCCACTGTCATCCAAAGGTCTGGGTTCTGG...GCGCCTGATTGCAAGGTCCTCAGTTCCATGTTCTGGTGTGTGTGGGGACAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR GCA 72 bp | CCAGAACCCAGACCTTTGGATGACAGTGGCTCCATCTaGCCTGAGCATTGGTTGGCATTCGACCCAGCCATC | + |
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Preference number: 3 (lower is better) Translates to: PEPRPLDDSGSI*PEHWLAFDPAI Trigger: GATGGCTGGGTCGAATGCCAACCAATGCTCAGGGCAGATGGAGCCACTGTCATCCAAAGGTCTGGGTTCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CCA 72 bp | ACAGGGAGTGGTTTCGCTGAGGTCGTATACCTCACCTaGCTTAGCCAGGCTGTCCCCACACACACCAGAACA | + |
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Preference number: 3 (lower is better) Translates to: TGSGFAEVVYLT*LSQAVPTHTRT Trigger: TGTTCTGGTGTGTGTGGGGACAGCCTGGCTAAGCCAGGTGAGGTATACGACCTCAGCGAAACCACTCCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR GCA 72 bp | GAATGTCCTTGTTCCTGCTTGGATTCAAGCCTGCAGTaGAATTTCACGACCTGGGGCCCAGGACCCTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: ECPCSCLDSSLQ*NFTTWGPGPCR Trigger: TCTGCAGGGTCCTGGGCCCCAGGTCGTGAAATTGCACTGCAGGCTTGAATCCAAGCAGGAACAAGGACATTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR TCA 72 bp | CTGGCCCTACCCTTTTGGCCCTTTAGCCACAGGCTCTaGATGTCCTTGTTCCTGCTTGGATTCAAGCCTGCA | + |
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Preference number: 3 (lower is better) Translates to: LALPFWPFSHRL*MSLFLLGFKPA Trigger: TGCAGGCTTGAATCCAAGCAGGAACAAGGACATTCAGAGCCTGTGGCTAAAGGGCCAAAAGGGTAGGGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CCA 72 bp | GTAAGGATAGCCCTACATTCCCAAGGACAGAACACCTaGCCCTACCCTTTTGGCCCTTTAGCCACAGGCTCT | + |
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Preference number: 3 (lower is better) Translates to: VRIALHSQGQNT*PYPFGPLATGS Trigger: AGAGCCTGTGGCTAAAGGGCCAAAAGGGTAGGGCCAGGTGTTCTGTCCTTGGGAATGTAGGGCTATCCTTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CCA 72 bp | CTGTCTGCCCAGTCAATGACTGATGATCGATCCCCTTaGGACAGGAACCACATTAGAGGGTTTATTTACACA | + |
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Preference number: 3 (lower is better) Translates to: LSAQSMTDDRSP*DRNHIRGFIYT Trigger: TGTGTAAATAAACCCTCTAATGTGGTTCCTGTCCCAAGGGGATCGATCATCAGTCATTGACTGGGCAGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR GCA 90 bp | GGGAGCCTCTGGCAGGAAGAGGGAGAGAGCTGGCGGGGGCCAAGCCTGTGCATGCGAGCGCGGGGGCTGTaGGCTCTCTCCAGGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: GSLWQEEGESWRGPSLCMRARGL*ALSRPR Trigger: CCTGGGCCTGGAGAGAGCGCACAGCCCCCGCGCTCG...CATGCACAGGCTTGGCCCCCGCCAGCTCTCTCCCTCTTCCTGCCAGAGGCTCCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR GCA 90 bp | GGGAGCCTCTGGCAGGAAGAGGGAGAGAGCTGGCGGGGGCCAAGCCTGTGCATGCACGGTACCGGACCCTaGGATCTCCTGCTCCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: GSLWQEEGESWRGPSLCMHGTGP*DLLLLG Trigger: CCCGAGGAGCAGGAGATCGCAGGGTCCGGTACCGTG...CATGCACAGGCTTGGCCCCCGCCAGCTCTCTCCCTCTTCCTGCCAGAGGCTCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR GCA 90 bp | CATAAGGTAGCTGTTGTTCAGACAGCGTGCCATCCCTGGGGGACAGTGCCATCCGGCGGCCGGCCAGTCTaGACCCAGGCCGGTGTGTCG | + |
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Preference number: 4 (lower is better) Translates to: HKVAVVQTACHPWGTVPSGGRPV*TQAGVS Trigger: CGACACACCGGCCTGGGTGCAGACTGGCCGGCCGCC...GGATGGCACTGTCCCCCAGGGATGGCACGCTGTCTGAACAACAGCTACCTTATG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR CCA 90 bp | GAGGTCGTATACCTCACCTGGCTTAGCCAGGCTGTCCCCACACACACCAGAACAGCGGGGGTCCCGGTGTaGCGGACCCCAGAGGCGCAT | + |
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Preference number: 4 (lower is better) Translates to: EVVYLTWLSQAVPTHTRTAGVPV*RTPEAH Trigger: ATGCGCCTCTGGGGTCCGCCACACCGGGACCCCCGC...TGTTCTGGTGTGTGTGGGGACAGCCTGGCTAAGCCAGGTGAGGTATACGACCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR GCA 90 bp | GCATGGGAGCACCCCAAGGGAGGGGCATTGCTAGGCTCCCATTCCAACATCTCCAGCGGTAGCCGCACGTaGCGCAGCAGAAGCTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: AWEHPKGGALLGSHSNISSGSRT*RSRSCR Trigger: TCTACAGCTTCTGCTGCGGCACGTGCGGCTACCGCT...GGAGATGTTGGAATGGGAGCCTAGCAATGCCCCTCCCTTGGGGTGCTCCCATGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR GCA 90 bp | TCCCAAGGACAGAACACCTGGCCCTACCCTTTTGGCCCTTTAGCCACAGGCTCTGCTGCAACGTCAGGCTaGCACCACCCTGCAGCCTCG | + |
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Preference number: 4 (lower is better) Translates to: SQGQNTWPYPFGPLATGSAATSG*HHPAAS Trigger: CGAGGCTGCAGGGTGGTGGCAGCCTGACGTTGCAGC...AGAGCCTGTGGCTAAAGGGCCAAAAGGGTAGGGCCAGGTGTTCTGTCCTTGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR GCA 90 bp | TGTCCTTGTTCCTGCTTGGATTCAAGCCTGCAGTGCAATTTCACGACCTGGGGCCAGCGCCAGTCGGAGTaGGAGCGGGAGCCCATGCGA | + |
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Preference number: 4 (lower is better) Translates to: CPCSCLDSSLQCNFTTWGQRQSE*EREPMR Trigger: TCGCATGGGCTCCCGCTCGCACTCCGACTGGCGCTG...GCCCCAGGTCGTGAAATTGCACTGCAGGCTTGAATCCAAGCAGGAACAAGGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CAA 72 bp | TGTCCCCACACACACCAGAACATGGAACTGAGGACCTaGCAATCAGGCGCCGACAGTACCCTGGGCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: CPHTHQNMELRT*QSGADSTLGLS Trigger: GCTGAGGCCCAGGGTACTGTCGGCGCCTGATTGCAAGGTCCTCAGTTCCATGTTCTGGTGTGTGTGGGGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR CCA 90 bp | TCCCAAGGACAGAACACCTGGCCCTACCCTTTTGGCCCTTTAGCCACAGGCTCTCCGGTGTGTCGTAGTTaGAGCAGCGGCTCTGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SQGQNTWPYPFGPLATGSPVCRS*SSGSGP Trigger: TGGACCAGAGCCGCTGCTCCAACTACGACACACCGG...AGAGCCTGTGGCTAAAGGGCCAAAAGGGTAGGGCCAGGTGTTCTGTCCTTGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR CCA 90 bp | AGGATAGCCCTACATTCCCAAGGACAGAACACCTGGCCCTACCCTTTTGGCCCTGCAGTTACCCAAGGGTaGACCCAGAGGCGGAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: RIALHSQGQNTWPYPFGPAVTQG*TQRRRQ Trigger: CTGCCTCCGCCTCTGGGTCCACCCTTGGGTAACTGC...AGGGCCAAAAGGGTAGGGCCAGGTGTTCTGTCCTTGGGAATGTAGGGCTATCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR CCA 90 bp | TCAGGTCCCCAAACCTTCATTTCTTTATCTGCAGACAGCCCTGTAGGTCTCTTCGGGCCGCCGGGGAGCTaGGGAGACCTGAGCCACCAA | + |
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Preference number: 4 (lower is better) Translates to: SGPQTFISLSADSPVGLFGPPGS*GDLSHQ Trigger: TTGGTGGCTCAGGTCTCCCCAGCTCCCCGGCGGCCC...GAAGAGACCTACAGGGCTGTCTGCAGATAAAGAAATGAAGGTTTGGGGACCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| 3UTR CAA 72 bp | TTGGATGACAGTGGCTCCATCTGCCCTGAGCATTGGTaGGCATTCGACCCAGCCATCCTCTCTGGCCACTTC | + |
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Preference number: 4 (lower is better) Translates to: LDDSGSICPEHW*AFDPAILSGHF Trigger: GAAGTGGCCAGAGAGGATGGCTGGGTCGAATGCCAACCAATGCTCAGGGCAGATGGAGCCACTGTCATCCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR GCA 90 bp | TTAGAGGGTTTATTTACACAGGTAAGGATAGCCCTACATTCCCAAGGACAGAACCCAGGCGCGCCCCGATaGCGACCAGCACGAGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: LEGLFTQVRIALHSQGQNPGAPR*RPARVE Trigger: CTCTACTCGTGCTGGTCGGCATCGGGGCGCGCCTGG...GTTCTGTCCTTGGGAATGTAGGGCTATCCTTACCTGTGTAAATAAACCCTCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR CCA 90 bp | TTATTTACACAGGTAAGGATAGCCCTACATTCCCAAGGACAGAACACCTGGCCCGGAGGCAGTGGTTCTTaGGGACCTGGCTGCTTGAGA | + |
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Preference number: 4 (lower is better) Translates to: LFTQVRIALHSQGQNTWPGGSGS*GPGCLR Trigger: TCTCAAGCAGCCAGGTCCCCAAGAACCACTGCCTCC...GGGCCAGGTGTTCTGTCCTTGGGAATGTAGGGCTATCCTTACCTGTGTAAATAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR TCA 90 bp | TTAGAGGGTTTATTTACACAGGTAAGGATAGCCCTACATTCCCAAGGACAGAACCCAGAGGCGCATTATTaGGGCGTTTCTTGTCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: LEGLFTQVRIALHSQGQNPEAHY*GVSCLC Trigger: GCACAGACAAGAAACGCCTCAATAATGCGCCTCTGG...GTTCTGTCCTTGGGAATGTAGGGCTATCCTTACCTGTGTAAATAAACCCTCTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 90 bp | GACCCTGCCAGCAGCAGCGCCAGTCGGAGTGCGAGCGGGAGCCCATaGGAGCGCCGGCCACAGCGCTGTCCCCGCGCCCCAGCGCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: DPASSSASRSASGSP*ERRPQRCPRAPARS Trigger: GGAGCGCGCTGGGGCGCGGGGACAGCGCTGTGGCCGGCGCTCGCATGGGCTCCCGCTCGCACTCCGACTGGCGCTGCTGCTGGCAGGGTC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 90 bp | GATCTCCTGCTCCTCGGGAGCCCCCGCGCGGCCCGACGGCGACCCTaGCAGCAGCAGCGCCAGTCGGAGTGCGAGCGGGAGCCCATGCGA | + |
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Preference number: 5 (lower is better) Translates to: DLLLLGSPRAARRRP*QQQRQSECEREPMR Trigger: TCGCATGGGCTCCCGCTCGCACTCCGACTGGCGCTGCTGCTGGCAGGGTCGCCGTCGGGCCGCGCGGGGGCTCCCGAGGAGCAGGAGATC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS CCA 90 bp | CACGCTGAACTGGCGCCGTGGCGCGTGGTTGGGCCGCCGGGGAGCTaGGGAGACCTGAGCCACCAAGTGGCTACGGGGGAGCGGCCTCGC | + |
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Preference number: 5 (lower is better) Translates to: HAELAPWRVVGPPGS*GDLSHQVATGERPR Trigger: GCGAGGCCGCTCCCCCGTAGCCACTTGGTGGCTCAGGTCTCCCCAGCTCCCCGGCGGCCCAACCACGCGCCACGGCGCCAGTTCAGCGTG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179269.3 ENSMUST00000229543.2 |
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| CDS GCA 90 bp | GAGCGCGGGGGCTGTGCGCTCTCTCCAGGCCCAGGCGCGCCCCGATaGCGACCAGCACGAGTAGAGCGGCGACACCGCACACCGCGTAGA | + |
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Preference number: 5 (lower is better) Translates to: ERGGCALSPGPGAPR*RPARVERRHRTPRR Trigger: TCTACGCGGTGTGCGGTGTCGCCGCTCTACTCGTGCTGGTCGGCATCGGGGCGCGCCTGGGCCTGGAGAGAGCGCACAGCCCCCGCGCTC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS CCA 90 bp | CGCGCTGAAGGCCTCGGGCAGCTTCTCCACGCTGAACTGGCGCCGTaGCGCGTGGTTGGGCCGCCGGGGAGCTGGGGAGACCTGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: RAEGLGQLLHAELAP*RVVGPPGSWGDLSH Trigger: GTGGCTCAGGTCTCCCCAGCTCCCCGGCGGCCCAACCACGCGCCACGGCGCCAGTTCAGCGTGGAGAAGCTGCCCGAGGCCTTCAGCGCG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179269.3 ENSMUST00000229543.2 |
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| CDS GCA 90 bp | GCCCATCACGTCGTAATAGCCGCGGCAGCGGTCGCCTCCCGCCGGTaGCACGGTACCGGACCCTGCGATCTCCTGCTCCTCGGGAGCCCC | + |
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Preference number: 5 (lower is better) Translates to: AHHVVIAAAAVASRR*HGTGPCDLLLLGSP Trigger: GGGGCTCCCGAGGAGCAGGAGATCGCAGGGTCCGGTACCGTGGCACCGGCGGGAGGCGACCGCTGCCGCGGCTATTACGACGTGATGGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 90 bp | AGTTCTGTCAGTGTCCTGGTCACCGTGCGCCGAGCGCGGGGGCTGTaGGCTCTCTCCAGGCCCAGGCGCGCCCCGATGCCGACCAGCACG | + |
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Preference number: 5 (lower is better) Translates to: SSVSVLVTVRRARGL*ALSRPRRAPMPTST Trigger: CGTGCTGGTCGGCATCGGGGCGCGCCTGGGCCTGGAGAGAGCGCACAGCCCCCGCGCTCGGCGCACGGTGACCAGGACACTGACAGAACT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS-3UTR CAA 90 bp | GTGGCCCTGGGCCAATCTGGCCAAGCAGCCTGCAAGCCAGGAGCCGGCCCAGGGCGGAGGCAGTGGTTCTaGGGGACCTGGCTGCTTGAG | + |
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Preference number: 5 (lower is better) Translates to: VALGQSGQAACKPGAGPGRRQWF*GTWLLE Trigger: CTCAAGCAGCCAGGTCCCCAAGAACCACTGCCTCCG...CCCTGGGCCGGCTCCTGGCTTGCAGGCTGCTTGGCCAGATTGGCCCAGGGCCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 90 bp | AAGGGTGGACCCAGAGGCGGAGGCAGTGGTTCTTGGGGACCTGGCTaGTTGAGAAGTTCTGTCAGTGTCCTGGTCACCGTGCGCCGAGCG | + |
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Preference number: 5 (lower is better) Translates to: KGGPRGGGSGSWGPG*LRSSVSVLVTVRRA Trigger: CGCTCGGCGCACGGTGACCAGGACACTGACAGAACTTCTCAAGCAGCCAGGTCCCCAAGAACCACTGCCTCCGCCTCTGGGTCCACCCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 90 bp | AAGGGTGGACCCAGAGGCGGAGGCAGTGGTTCTTGGGGACCTGGCTaGTTGAGAAGTTCTGTCAGTGTCCTATACTCCCGCTGTGTGGGC | + |
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Preference number: 5 (lower is better) Translates to: KGGPRGGGSGSWGPG*LRSSVSVLYSRCVG Trigger: GCCCACACAGCGGGAGTATAGGACACTGACAGAACTTCTCAAGCAGCCAGGTCCCCAAGAACCACTGCCTCCGCCTCTGGGTCCACCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229543.2 |
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| CDS CCA 90 bp | GAGAACACCGTCACCCATTTGTACCTGGACGCAGTTACCCAAGGGTaGACCCAGAGGCGGAGGCAGTGGTTCTTGGGGACCTGGCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: ENTVTHLYLDAVTQG*TQRRRQWFLGTWLL Trigger: AAGCAGCCAGGTCCCCAAGAACCACTGCCTCCGCCTCTGGGTCCACCCTTGGGTAACTGCGTCCAGGTACAAATGGGTGACGGTGTTCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179269.3 ENSMUST00000229543.2 |
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| CDS TCA 90 bp | GTGGACCCAGAGGCGGAGGCAGTGGTTCTTGGGGACCTGGCTGCTTaGGAAGTTCTGTCAGTGTCCTATACTCCCGCTGTGTGGGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: VDPEAEAVVLGDLAA*EVLSVSYTPAVWAS Trigger: AGAAGCCCACACAGCGGGAGTATAGGACACTGACAGAACTTCTCAAGCAGCCAGGTCCCCAAGAACCACTGCCTCCGCCTCTGGGTCCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229543.2 |
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| CDS-3UTR CAA 90 bp | GCATGGGAGCACCCCAAGGGAGGGGCATTGCTAGGCTCCCATTCCAACATCTCCTGGGGACCTGGCTGCTaGAGAAGTTCTGTCAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: AWEHPKGGALLGSHSNISWGPGC*RSSVSV Trigger: GACACTGACAGAACTTCTCAAGCAGCCAGGTCCCCA...GGAGATGTTGGAATGGGAGCCTAGCAATGCCCCTCCCTTGGGGTGCTCCCATGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 90 bp | TTGAGAAGTTCTGTCAGTGTCCTATACTCCCGCTGTGTGGGCTTCTaGCAGGCCTGGGGCCTCGCTGGCATACGGACAAAGAAGGCAGAC | + |
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Preference number: 5 (lower is better) Translates to: LRSSVSVLYSRCVGF*QAWGLAGIRTKKAD Trigger: GTCTGCCTTCTTTGTCCGTATGCCAGCGAGGCCCCAGGCCTGGCAGAAGCCCACACAGCGGGAGTATAGGACACTGACAGAACTTCTCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229543.2 |
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| CDS GCA 90 bp | TTGATAGAAGTCCTGGGGTGCAACCTCTGTAGCCTTGAGCGCAGCTaGTTTGAGGGTAGCGAACTTGGCATAGTCAGGCTGCAACGTCAG | + |
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Preference number: 5 (lower is better) Translates to: LIEVLGCNLCSLERS*FEGSELGIVRLQRQ Trigger: CTGACGTTGCAGCCTGACTATGCCAAGTTCGCTACCCTCAAAGCAGCTGCGCTCAAGGCTACAGAGGTTGCACCCCAGGACTTCTATCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179269.3 ENSMUST00000229543.2 |
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| CDS-3UTR CAA 90 bp | TTATTTACACAGGTAAGGATAGCCCTACATTCCCAAGGACAGAACACCTGGCCCTTATTGAGGCGTTTCTaGTCTGTGCTGTTGTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: LFTQVRIALHSQGQNTWPLLRRF*SVLLWG Trigger: CCCCCACAACAGCACAGACAAGAAACGCCTCAATAA...GGGCCAGGTGTTCTGTCCTTGGGAATGTAGGGCTATCCTTACCTGTGTAAATAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 72 bp | CTCCTCGGGAGCCCCCGCGCGGCCCGACGGCGACCCTaGCAGCAGCAGCGCCAGTCGGAGTGCGAGCGGGAG | + |
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Preference number: 6 (lower is better) Translates to: LLGSPRAARRRP*QQQRQSECERE Trigger: CTCCCGCTCGCACTCCGACTGGCGCTGCTGCTGGCAGGGTCGCCGTCGGGCCGCGCGGGGGCTCCCGAGGAG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 72 bp | AGCAGCAGCGCCAGTCGGAGTGCGAGCGGGAGCCCATaGGAGCGCCGGCCACAGCGCTGTCCCCGCGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: SSSASRSASGSP*ERRPQRCPRAP Trigger: TGGGGCGCGGGGACAGCGCTGTGGCCGGCGCTCGCATGGGCTCCCGCTCGCACTCCGACTGGCGCTGCTGCT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 72 bp | AGTGTCCTGGTCACCGTGCGCCGAGCGCGGGGGCTGTaGGCTCTCTCCAGGCCCAGGCGCGCCCCGATGCCG | + |
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Preference number: 6 (lower is better) Translates to: SVLVTVRRARGL*ALSRPRRAPMP Trigger: CGGCATCGGGGCGCGCCTGGGCCTGGAGAGAGCGCACAGCCCCCGCGCTCGGCGCACGGTGACCAGGACACT 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS CCA 72 bp | CTGGCGCCGTGGCGCGTGGTTGGGCCGCCGGGGAGCTaGGGAGACCTGAGCCACCAAGTGGCTACGGGGGAG | + |
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Preference number: 6 (lower is better) Translates to: LAPWRVVGPPGS*GDLSHQVATGE Trigger: CTCCCCCGTAGCCACTTGGTGGCTCAGGTCTCCCCAGCTCCCCGGCGGCCCAACCACGCGCCACGGCGCCAG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179269.3 ENSMUST00000229543.2 |
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| CDS GCA 72 bp | GGCTGTGCGCTCTCTCCAGGCCCAGGCGCGCCCCGATaGCGACCAGCACGAGTAGAGCGGCGACACCGCACA | + |
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Preference number: 6 (lower is better) Translates to: GCALSPGPGAPR*RPARVERRHRT Trigger: TGTGCGGTGTCGCCGCTCTACTCGTGCTGGTCGGCATCGGGGCGCGCCTGGGCCTGGAGAGAGCGCACAGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 72 bp | GTCGTAATAGCCGCGGCAGCGGTCGCCTCCCGCCGGTaGCACGGTACCGGACCCTGCGATCTCCTGCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: VVIAAAAVASRR*HGTGPCDLLLL Trigger: GAGGAGCAGGAGATCGCAGGGTCCGGTACCGTGGCACCGGCGGGAGGCGACCGCTGCCGCGGCTATTACGAC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS CCA 72 bp | GTCCTATACTCCCGCTGTGTGGGCTTCTGCCAGGCCTaGGGCCTCGCTGGCATACGGACAAAGAAGGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: VLYSRCVGFCQA*GLAGIRTKKAD Trigger: GTCTGCCTTCTTTGTCCGTATGCCAGCGAGGCCCCAGGCCTGGCAGAAGCCCACACAGCGGGAGTATAGGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229543.2 |
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| CDS GCA 72 bp | CCCAGAGGCGGAGGCAGTGGTTCTTGGGGACCTGGCTaGTTGAGAAGTTCTGTCAGTGTCCTGGTCACCGTG | + |
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Preference number: 6 (lower is better) Translates to: PRGGGSGSWGPG*LRSSVSVLVTV Trigger: CACGGTGACCAGGACACTGACAGAACTTCTCAAGCAGCCAGGTCCCCAAGAACCACTGCCTCCGCCTCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS GCA 72 bp | TCTGTCAGTGTCCTATACTCCCGCTGTGTGGGCTTCTaGCAGGCCTGGGGCCTCGCTGGCATACGGACAAAG | + |
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Preference number: 6 (lower is better) Translates to: SVSVLYSRCVGF*QAWGLAGIRTK Trigger: CTTTGTCCGTATGCCAGCGAGGCCCCAGGCCTGGCAGAAGCCCACACAGCGGGAGTATAGGACACTGACAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229543.2 |
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| CDS GCA 72 bp | CCCAGAGGCGGAGGCAGTGGTTCTTGGGGACCTGGCTaGTTGAGAAGTTCTGTCAGTGTCCTATACTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: PRGGGSGSWGPG*LRSSVSVLYSR Trigger: GCGGGAGTATAGGACACTGACAGAACTTCTCAAGCAGCCAGGTCCCCAAGAACCACTGCCTCCGCCTCTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229543.2 |
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| CDS CCA 72 bp | TGGACCCAGAGGCGGAGGCAGTGGTTCTTGGGGACCTaGCTGCTTGAGAAGTTCTGTCAGTGTCCTGGTCAC | + |
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Preference number: 6 (lower is better) Translates to: WTQRRRQWFLGT*LLEKFCQCPGH Trigger: GTGACCAGGACACTGACAGAACTTCTCAAGCAGCCAGGTCCCCAAGAACCACTGCCTCCGCCTCTGGGTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179269.3 |
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| CDS CCA 72 bp | GCAGTTACCCAAGGGTGGACCCAGAGGCGGAGGCAGTaGTTCTTGGGGACCTGGCTGCTTGAGAAGTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: AVTQGWTQRRRQ*FLGTWLLEKFC Trigger: ACAGAACTTCTCAAGCAGCCAGGTCCCCAAGAACCACTGCCTCCGCCTCTGGGTCCACCCTTGGGTAACTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179269.3 ENSMUST00000229543.2 |
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| CDS CCA 72 bp | CCGCTGTGTGGGCTTCTGCCAGGCCTGGGGCCTCGCTaGCATACGGACAAAGAAGGCAGACAACAAGGAAAA | + |
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Preference number: 6 (lower is better) Translates to: PLCGLLPGLGPR*HTDKEGRQQGK Trigger: TTTTCCTTGTTGTCTGCCTTCTTTGTCCGTATGCCAGCGAGGCCCCAGGCCTGGCAGAAGCCCACACAGCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229543.2 |
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| CDS CAA 72 bp | GAGGGTCCGCGGGCCCGTCTCCGTAGAGGGAAAACGTaGATAGAAGTCCTGGGGTGCAACCTCTGTAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: EGPRARLRRGKT*IEVLGCNLCSL Trigger: AAGGCTACAGAGGTTGCACCCCAGGACTTCTATCAACGTTTTCCCTCTACGGAGACGGGCCCGCGGACCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179269.3 ENSMUST00000229543.2 |
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| CDS GCA 72 bp | GTCCTGGGGTGCAACCTCTGTAGCCTTGAGCGCAGCTaGTTTGAGGGTAGCGAACTTGGCATAGTCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: VLGCNLCSLERS*FEGSELGIVRL Trigger: CAGCCTGACTATGCCAAGTTCGCTACCCTCAAAGCAGCTGCGCTCAAGGCTACAGAGGTTGCACCCCAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179269.3 ENSMUST00000229543.2 |
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| CDS CCA 72 bp | TGGACCCAGAGGCGGAGGCAGTGGTTCTTGGGGACCTaGCTGCTTGAGAAGTTCTGTCAGTGTCCTATACTC | + |
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Preference number: 6 (lower is better) Translates to: WTQRRRQWFLGT*LLEKFCQCPIL Trigger: GAGTATAGGACACTGACAGAACTTCTCAAGCAGCCAGGTCCCCAAGAACCACTGCCTCCGCCTCTGGGTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229543.2 |
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| CDS CCA 72 bp | GGCGCATTATTGAGGCGTTTCTTGTCTGTGCTGTTGTaGGGGGAACCCCGGAGAACACCGTCACCCATTTGT | + |
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Preference number: 6 (lower is better) Translates to: GALLRRFLSVLL*GEPRRTPSPIC Trigger: ACAAATGGGTGACGGTGTTCTCCGGGGTTCCCCCCACAACAGCACAGACAAGAAACGCCTCAATAATGCGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179269.3 ENSMUST00000229543.2 |
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