RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SHISA7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053550

Ensembl transcript IDs: ENSMUST00000066041.12, ENSMUST00000117452.8, ENSMUST00000119433.4

Found 365 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTGATGGTGGGGGATaGGCAGAACAGGGCCTGCTGGCCCACCCTCAAGACCTCTCCCCA +
Preference number: 1 (lower is better)
Translates to: KARSQFWKHRGDGGG*AEQGLLAHPQDLSP
Trigger: TGGGGAGAGGTCTTGAGGGTGGGCCAGCAGGCCCTGTTCTGCTCATCCCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 90 bp GGGGAAGACTCAGAAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTaGTGGTGGGGGATGAGCAGAACAGGGCCTGCTGGCCCACCCTCA +
Preference number: 1 (lower is better)
Translates to: GEDSEGQVPILEASW*WWGMSRTGPAGPPS
Trigger: TGAGGGTGGGCCAGCAGGCCCTGTTCTGCTCATCCCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGAGTCTTCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 90 bp GTGATGCCATCTAAGGGCTGGGAAGCTCCCCCTCTGCTGCTGCTGTaGAGAGGTCACCAAGATGACCCTGTCACCGATCAGATGGCTGGG +
Preference number: 1 (lower is better)
Translates to: VMPSKGWEAPPLLLL*RGHQDDPVTDQMAG
Trigger: CCCAGCCATCTGATCGGTGACAGGGTCATCTTGGTGACCTCTCCACAGCAGCAGCAGAGGGGGAGCTTCCCAGCCCTTAGATGGCATCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 90 bp CTGGGAAGCTCCCCCTCTGCTGCTGCTGTGGAGAGGTCACCAAGATaGCCCTGTCACCGATCAGATGGCTGGGCAAGGGACAGTGGTAAT +
Preference number: 1 (lower is better)
Translates to: LGSSPSAAAVERSPR*PCHRSDGWARDSGN
Trigger: ATTACCACTGTCCCTTGCCCAGCCATCTGATCGGTGACAGGGTCATCTTGGTGACCTCTCCACAGCAGCAGCAGAGGGGGAGCTTCCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 90 bp GGTCTCAGAGCCTTGGTGTGTATGATAAGCCTTGTAATGGAGATCTaGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGCCCCCAGCACTC +
Preference number: 1 (lower is better)
Translates to: GLRALVCMISLVMEI*AGRRGPRKPQPPAL
Trigger: GAGTGCTGGGGGCTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTATCATACACACCAAGGCTCTGAGACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR TCA 90 bp ATCCTGGTTGGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGTaGTGCCATCTAAGGGCTGGGAAGCTCCCCCTCTGCTGCTGCTGT +
Preference number: 1 (lower is better)
Translates to: ILVGTKYQKWSGLGQ*CHLRAGKLPLCCCC
Trigger: ACAGCAGCAGCAGAGGGGGAGCTTCCCAGCCCTTAGATGGCATCACTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR GCA 90 bp TCTGGAAGCATCGTGGTGATGGTGGGGGATGAGCAGAACAGGGCCTaGTGGCCCACCCTCAAGACCTCTCCCCACTATGGCTTTATTGAA +
Preference number: 1 (lower is better)
Translates to: SGSIVVMVGDEQNRA*WPTLKTSPHYGFIE
Trigger: TTCAATAAAGCCATAGTGGGGAGAGGTCTTGAGGGTGGGCCAGCAGGCCCTGTTCTGCTCATCCCCCACCATCACCACGATGCTTCCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 90 bp GGGGTGACATTATCAGAGGAGGCAGCTGGCTCCACCCTAGTCCATTaGAGGGAATGGGAAATGGCCTGTTGTGCTGGTTCCCCTAAAGGG +
Preference number: 1 (lower is better)
Translates to: GVTLSEEAAGSTLVH*REWEMACCAGSPKG
Trigger: CCCTTTAGGGGAACCAGCACAACAGGCCATTTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCCTCTGATAATGTCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 90 bp CCAGCAAGTTCTGATCCTGGTTGGGACCAAGTACCAGAAATGGAGTaGGTTAGGGCAGTGATGCCATCTAAGGGCTGGGAAGCTCCCCCT +
Preference number: 1 (lower is better)
Translates to: PASSDPGWDQVPEME*VRAVMPSKGWEAPP
Trigger: AGGGGGAGCTTCCCAGCCCTTAGATGGCATCACTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 90 bp TGGGTGTGGCAGGAAAAGATTGTGCACTGGGTGTCAGGGACTTCCTaGAGCCCCTGGGTACTCACTCCCTGGTATATTAGGGAAAGAGGC +
Preference number: 1 (lower is better)
Translates to: WVWQEKIVHWVSGTS*SPWVLTPWYIRERG
Trigger: GCCTCTTTCCCTAATATACCAGGGAGTGAGTACCCAGGGGCTTCAGGAAGTCCCTGACACCCAGTGCACAATCTTTTCCTGCCACACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 90 bp AGCGATAGAGGTGTCTCCTGGTGTCATTTCCAAGTGGGTGGTAACTaGTGGTCACACCACAGAAGGGCCTCACTCTGGAGAAGTCCCAAG +
Preference number: 1 (lower is better)
Translates to: SDRGVSWCHFQVGGN*WSHHRRASLWRSPK
Trigger: CTTGGGACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCAGTTACCACCCACTTGGAAATGACACCAGGAGACACCTCTATCGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 90 bp TTCCCAGGTGGCCTTGGGCTACACATGCCCAACTTTCTCACGACATaGCACAGCGATAGAGGTGTCTCCTGGTGTCATTTCCAAGTGGGT +
Preference number: 1 (lower is better)
Translates to: FPGGLGLHMPNFLTT*HSDRGVSWCHFQVG
Trigger: ACCCACTTGGAAATGACACCAGGAGACACCTCTATCGCTGTGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTGGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 90 bp TTATCAGAGGAGGCAGCTGGCTCCACCCTAGTCCATTGGAGGGAATaGGAAATGGCCTGTTGTGCTGGTTCCCCTAAAGGGAGGAACTGT +
Preference number: 1 (lower is better)
Translates to: LSEEAAGSTLVHWRE*EMACCAGSPKGRNC
Trigger: ACAGTTCCTCCCTTTAGGGGAACCAGCACAACAGGCCATTTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCCTCTGATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 90 bp GGGCTTGGAGAAAGCTGTGTGTTCCATGGGAGTGTTAAGCACACTTaGAGGGAGGCCCTAGAATGGATGCGGAGCCCATGGAGCATCTAT +
Preference number: 1 (lower is better)
Translates to: GLGESCVFHGSVKHT*REALEWMRSPWSIY
Trigger: ATAGATGCTCCATGGGCTCCGCATCCATTCTAGGGCCTCCCTTCAAGTGTGCTTAACACTCCCATGGAACACACAGCTTTCTCCAAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 90 bp GTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGGAGGCGTaGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGAGCCTTGGTGTG +
Preference number: 1 (lower is better)
Translates to: VKGEISSTVTSQKEA*SPVQGPIWSQSLGV
Trigger: CACACCAAGGCTCTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 90 bp TCTCTAGACAGAGCATGGCCCAAGCCAGCAAGTTCTGATCCTGGTTaGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGTGATGCCA +
Preference number: 1 (lower is better)
Translates to: SLDRAWPKPASSDPG*DQVPEMEWVRAVMP
Trigger: TGGCATCACTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTGCTGGCTTGGGCCATGCTCTGTCTAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR GCA 90 bp GCGGAGCCCATGGAGCATCTATTAGTTGGGAGGCCGAAAACCTGGTaGTGGCATTTAGGAAGATTGGTGGTAACTCCCTACTTTCCTCAG +
Preference number: 1 (lower is better)
Translates to: AEPMEHLLVGRPKTW*WHLGRLVVTPYFPQ
Trigger: CTGAGGAAAGTAGGGAGTTACCACCAATCTTCCTAAATGCCAGCACCAGGTTTTCGGCCTCCCAACTAATAGATGCTCCATGGGCTCCGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 90 bp GTAACATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTaGTCTCAGAGCCTTGGTGTGTATGATAAGCCTTGTAATGGAGAT +
Preference number: 1 (lower is better)
Translates to: VTSQKEAWSPVQGPI*SQSLGVYDKPCNGD
Trigger: ATCTCCATTACAAGGCTTATCATACACACCAAGGCTCTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATGTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR TCA 90 bp ATGGGTCCTGGTAGATGGCACACAATTGCCACGGGTCCTAGAAGATaGGGACACACGGTTTTACATGGATTCTGGGAGAGGATGATGGCA +
Preference number: 1 (lower is better)
Translates to: MGPGRWHTIATGPRR*GHTVLHGFWERMMA
Trigger: TGCCATCATCCTCTCCCAGAATCCATGTAAAACCGTGTGTCCTCATCTTCTAGGACCCGTGGCAATTGTGTGCCATCTACCAGGACCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 90 bp GGTGATGGCATCACAGGAGGGAGGCAAAGTCCTGTGATAGTATTGTaGAAAGGAGGCCTAATTGTTAGTGAGGACATAACTGGCAGGGCG +
Preference number: 1 (lower is better)
Translates to: GDGITGGRQSPVIVL*KGGLIVSEDITGRA
Trigger: CGCCCTGCCAGTTATGTCCTCACTAACAATTAGGCCTCCTTTCCACAATACTATCACAGGACTTTGCCTCCCTCCTGTGATGCCATCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 90 bp CAAGTGGGTGGTAACTGGTGGTCACACCACAGAAGGGCCTCACTCTaGAGAAGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCA +
Preference number: 1 (lower is better)
Translates to: QVGGNWWSHHRRASL*RSPKNRWSFLVMTS
Trigger: TGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCAGTTACCACCCACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 90 bp TACTCACTCCCTGGTATATTAGGGAAAGAGGCAAAGGAGCACCCTTaGCCTTTTCAGGTGAAGGTAGCAGGGGCCATTGCTCTCAGATAT +
Preference number: 1 (lower is better)
Translates to: YSLPGILGKEAKEHP*PFQVKVAGAIALRY
Trigger: ATATCTGAGAGCAATGGCCCCTGCTACCTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTCCCTAATATACCAGGGAGTGAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 90 bp AGCAATGACCTCATATACAGGCCTCCTTCCTCTGGGATGACATCATaGGAGGGAGGCCTTGGTTCAAACAGTGACAAAGTAAAAGGAGAG +
Preference number: 1 (lower is better)
Translates to: SNDLIYRPPSSGMTS*EGGLGSNSDKVKGE
Trigger: CTCTCCTTTTACTTTGTCACTGTTTGAACCAAGGCCTCCCTCCCATGATGTCATCCCAGAGGAAGGAGGCCTGTATATGAGGTCATTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR TCA 90 bp ACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTTaGAGTAGGTCCTGGAGAATGAAGACACTGTTGGCTATTATGGCT +
Preference number: 1 (lower is better)
Translates to: TTVIMVDPKPWRHWG*SRSWRMKTLLAIMA
Trigger: AGCCATAATAGCCAACAGTGTCTTCATTCTCCAGGACCTACTTCAACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 90 bp GCGATGTGTCCCAGGAAAATGGCTTTGTCTGTAGTGGTGGCATCATaGAATGGAGCTATCTTCTCCATGGCAGAGAAACATTTTTCCTGT +
Preference number: 1 (lower is better)
Translates to: AMCPRKMALSVVVAS*NGAIFSMAEKHFSC
Trigger: ACAGGAAAAATGTTTCTCTGCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTCCTGGGACACATCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 90 bp TTAACATTGGACCCCAACTGCTATGCCATCATGAAAGGAGGACACTaGGTGGCATTGATGATGTCATTGGCAAGGTCAACAGCACATATA +
Preference number: 1 (lower is better)
Translates to: LTLDPNCYAIMKGGH*VALMMSLARSTAHI
Trigger: TATATGTGCTGTTGACCTTGCCAATGACATCATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTCCAATGTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR TCA 90 bp TTTCCTGTGATGATAATTGCAAGAGGCCTTGGTGCTCAGTCAGGATaGTGTCAACAAGTGTCAAGAAGTGTGAGACTTGTCTCTGTAGTG +
Preference number: 1 (lower is better)
Translates to: FPVMIIARGLGAQSG*CQQVSRSVRLVSVV
Trigger: CACTACAGAGACAAGTCTCACACTTCTTGACACTTGTTGACATCATCCTGACTGAGCACCAAGGCCTCTTGCAATTATCATCACAGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR GCA 90 bp GCTATCTTCTCCATGGCAGAGAAACATTTTTCCTGTGATGATAATTaGAAGAGGCCTTGGTGCTCAGTCAGGATGATGTCAACAAGTGTC +
Preference number: 1 (lower is better)
Translates to: AIFSMAEKHFSCDDN*KRPWCSVRMMSTSV
Trigger: GACACTTGTTGACATCATCCTGACTGAGCACCAAGGCCTCTTGCAATTATCATCACAGGAAAAATGTTTCTCTGCCATGGAGAAGATAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 90 bp GACTTAAGGACTCTGATGACACAATCATTATGCAGTCACTACTGTTaGTCATCTAGAGTGGGGAACACCTCTGAGAAGGAAGCACTCTAT +
Preference number: 1 (lower is better)
Translates to: DLRTLMTQSLCSHYC*SSRVGNTSEKEALY
Trigger: ATAGAGTGCTTCCTTCTCAGAGGTGTTCCCCACTCTAGATGACCAACAGTAGTGACTGCATAATGATTGTGTCATCAGAGTCCTTAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 90 bp GATACTTGTGACACTATTAGATGGATACTGGGATGTGATGATACATaGTCACAAGAATCCAGGGACACCACAGTTGGAGTGGATTTTATG +
Preference number: 1 (lower is better)
Translates to: DTCDTIRWILGCDDT*SQESRDTTVGVDFM
Trigger: CATAAAATCCACTCCAACTGTGGTGTCCCTGGATTCTTGTGACCATGTATCATCACATCCCAGTATCCATCTAATAGTGTCACAAGTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp CCCCAGGGCTCACTGCACAGGCCCAGTCTGCCTTTACTGGGGCTAGTAGACATCAATGGAGATCTGGGCTaGGAGAAGGGGGCCTCGGAA +
Preference number: 2 (lower is better)
Translates to: PQGSLHRPSLPLLGLVDINGDLG*EKGASE
Trigger: TTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATT...GATGTCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR TCA 90 bp GAAAGAGGCAAAGGAGCACCCTTGGCCTTTTCAGGTGAAGGTAGCAGGGGCCATGAGCGGCTGTGGAGCTaGAGCTCATCCATGGGTGCC +
Preference number: 2 (lower is better)
Translates to: ERGKGAPLAFSGEGSRGHERLWS*SSSMGA
Trigger: GGCACCCATGGATGAGCTTCAGCTCCACAGCCGCTC...ATGGCCCCTGCTACCTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp GAAAGAGGCAAAGGAGCACCCTTGGCCTTTTCAGGTGAAGGTAGCAGGGGCCATCTCCTTCCTCTGGGATaGCATCATGGGAGGGAGGCC +
Preference number: 2 (lower is better)
Translates to: ERGKGAPLAFSGEGSRGHLLPLG*HHGREA
Trigger: GGCCTCCCTCCCATGATGTCATCCCAGAGGAAGGAG...ATGGCCCCTGCTACCTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp GGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGACATCCCAAAAGGAGGCGTaGTCTCCGGTCCAAGGGCCC +
Preference number: 2 (lower is better)
Translates to: GFRGLRNLWCGTLILSLTSQKEA*SPVQGP
Trigger: GGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGA...TGTCAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR GCA 90 bp GTGGGCAAACAAAAGCTGAAAGCCCCTGAACCTCTCCAGGGCTTGGAGAAAGCTATCCCCAGGGCTCACTaGACAGGCCCAGTCTGCCTT +
Preference number: 2 (lower is better)
Translates to: VGKQKLKAPEPLQGLEKAIPRAH*TGPVCL
Trigger: AAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGGAT...AGCTTTCTCCAAGCCCTGGAGAGGTTCAGGGGCTTTCAGCTTTTGTTTGCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR GCA 90 bp GGAAGACTCAGAAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTGATGGTGGGGGAGTGGAAGGAGGCTTaGCAAGGCCAAGTCTGTAGG +
Preference number: 2 (lower is better)
Translates to: GRLRRPGPNSGSIVVMVGEWKEA*QGQVCR
Trigger: CCTACAGACTTGGCCTTGGCAAGCCTCCTTCCACTC...CCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGAGTCTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp CAGGACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCATCTGGGATGACATCATaGGAGGGAGGCCTTGGTTCA +
Preference number: 2 (lower is better)
Translates to: QDFSSPVDQSGCGAEAHPSGMTS*EGGLGS
Trigger: TGAACCAAGGCCTCCCTCCCATGATGTCATCCCAGA...TGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CCA 90 bp CCCCAGGGCTCACTGCACAGGCCCAGTCTGCCTTTACTGGGGCTAGTAGACATCGTAGTGGTGGCATCATaGAATGGAGCTATCTTCTCC +
Preference number: 2 (lower is better)
Translates to: PQGSLHRPSLPLLGLVDIVVVAS*NGAIFS
Trigger: GGAGAAGATAGCTCCATTCCATGATGCCACCACTAC...GATGTCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CCA 90 bp GGAAGACTCAGAAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTGATGGTGGGGAGAAGGGCCTCACTCTaGAGAAGTCCCAAGAACAGG +
Preference number: 2 (lower is better)
Translates to: GRLRRPGPNSGSIVVMVGRRASL*RSPKNR
Trigger: CCTGTTCTTGGGACTTCTCCAGAGTGAGGCCCTTCT...CCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGAGTCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp CCCCAGGGCTCACTGCACAGGCCCAGTCTGCCTTTACTGGGGCTAGTAGACATCGATAGAGGTGTCTCCTaGTGTCATTTCCAAGTGGGT +
Preference number: 2 (lower is better)
Translates to: PQGSLHRPSLPLLGLVDIDRGVS*CHFQVG
Trigger: ACCCACTTGGAAATGACACCAGGAGACACCTCTATC...GATGTCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CCA 90 bp GAGGTGATGACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTGCTGAAGCTCATCCATaGGTGCCGTCCCCAGGGCTC +
Preference number: 2 (lower is better)
Translates to: EVMTTVIMVDPKPWRHWGAEAHP*VPSPGL
Trigger: GAGCCCTGGGGACGGCACCCATGGATGAGCTTCAGC...ACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTCATCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp ATGGGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGGCACTCACCAGTGAGTaGAAGGAGGCTTGCCAAGGC +
Preference number: 2 (lower is better)
Translates to: MGFRGLRNLWCGTLILSLALTSE*KEACQG
Trigger: GCCTTGGCAAGCCTCCTTCCACTCACTGGTGAGTGC...CAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp ACATTATCAGAGGAGGCAGCTGGCTCCACCCTAGTCCATTGGAGGGAATGGGAAAGGCACCTATTCTGGTaGTGGCATCACAGGAGGGAG +
Preference number: 2 (lower is better)
Translates to: TLSEEAAGSTLVHWREWERHLFW*WHHRRE
Trigger: CTCCCTCCTGTGATGCCATCACCAGAATAGGTGCCT...TTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCCTCTGATAATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR GCA 90 bp GAAAGGAGGACACTGGGTGGCATTGATGATGTCATTGGCAAGGTCAACAGCACAAAGCTCATCCATGGGTaGCGTCCCCAGGGCTCACTG +
Preference number: 2 (lower is better)
Translates to: ERRTLGGIDDVIGKVNSTKLIHG*RPQGSL
Trigger: CAGTGAGCCCTGGGGACGGCACCCATGGATGAGCTT...TGTGCTGTTGACCTTGCCAATGACATCATCAATGCCACCCAGTGTCCTCCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CCA 90 bp CAAGTTCTGATCCTGGTTGGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGGTCCAAGGGCCCATCTaGTCTCAGAGCCTTGGTGTG +
Preference number: 2 (lower is better)
Translates to: QVLILVGTKYQKWSGLGQVQGPI*SQSLGV
Trigger: CACACCAAGGCTCTGAGACCAGATGGGCCCTTGGAC...CTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp CCTGTCACCGATCAGATGGCTGGGCAAGGGACAGTGGTAATCCAAGAAGAGTTAGTCCAAGGGCCCATCTaGTCTCAGAGCCTTGGTGTG +
Preference number: 2 (lower is better)
Translates to: PVTDQMAGQGTVVIQEELVQGPI*SQSLGV
Trigger: CACACCAAGGCTCTGAGACCAGATGGGCCCTTGGAC...TAACTCTTCTTGGATTACCACTGTCCCTTGCCCAGCCATCTGATCGGTGACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp GAAAGAGGCAAAGGAGCACCCTTGGCCTTTTCAGGTGAAGGTAGCAGGGGCCATCAAGTGGGTGGTAACTaGTGGTCACACCACAGAAGG +
Preference number: 2 (lower is better)
Translates to: ERGKGAPLAFSGEGSRGHQVGGN*WSHHRR
Trigger: CCTTCTGTGGTGTGACCACCAGTTACCACCCACTTG...ATGGCCCCTGCTACCTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp CAGGTGGCCTTGGGCTACACATGCCCAACTTTCTCACGACATGGCACAGCGATACAAGTGGGTGGTAACTaGTGGTCACACCACAGAAGG +
Preference number: 2 (lower is better)
Translates to: QVALGYTCPTFSRHGTAIQVGGN*WSHHRR
Trigger: CCTTCTGTGGTGTGACCACCAGTTACCACCCACTTG...TATCGCTGTGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CAA 90 bp ACATCTCAGGACAGGTTACTTTCTCTGGCCTCTTCCCAGGTGGCCTaGGGCTACACATGCCCAACTTTCTCACGACATGGCACAGCGATA +
Preference number: 2 (lower is better)
Translates to: TSQDRLLSLASSQVA*GYTCPTFSRHGTAI
Trigger: TATCGCTGTGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTGGGAAGAGGCCAGAGAAAGTAACCTGTCCTGAGATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR TCA 90 bp GAGGTGATGACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTAAGACCCCCTGGCTGTaGTGGATGCTGGGAGGTGAT +
Preference number: 2 (lower is better)
Translates to: EVMTTVIMVDPKPWRHWGKTPWL*WMLGGD
Trigger: ATCACCTCCCAGCATCCATCACAGCCAGGGGGTCTT...ACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTCATCACCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp GGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGACAAGGACAGTGTGGTTCTaGTGGATCTCACCATCTGGG +
Preference number: 2 (lower is better)
Translates to: GFRGLRNLWCGTLILSLTRTVWF*WISPSG
Trigger: CCCAGATGGTGAGATCCATCAGAACCACACTGTCCT...TGTCAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR GCA 90 bp ACATTATCAGAGGAGGCAGCTGGCTCCACCCTAGTCCATTGGAGGGAATGGGAAGGGAGGAACTGTAAATaGCATGAGACCCCAGAGGAC +
Preference number: 2 (lower is better)
Translates to: TLSEEAAGSTLVHWREWEGRNCK*HETPED
Trigger: GTCCTCTGGGGTCTCATGGCATTTACAGTTCCTCCC...TTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCCTCTGATAATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp ACATTATCAGAGGAGGCAGCTGGCTCCACCCTAGTCCATTGGAGGGAATGGGAATCTGGGATGACATCATaGGAGGGAGGCCTTGGTTCA +
Preference number: 2 (lower is better)
Translates to: TLSEEAAGSTLVHWREWESGMTS*EGGLGS
Trigger: TGAACCAAGGCCTCCCTCCCATGATGTCATCCCAGA...TTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCCTCTGATAATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp CAGGACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCAGTAGTGGTGGCATCATaGAATGGAGCTATCTTCTCC +
Preference number: 2 (lower is better)
Translates to: QDFSSPVDQSGCGAEAHPVVVAS*NGAIFS
Trigger: GGAGAAGATAGCTCCATTCCATGATGCCACCACTAC...TGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR TCA 90 bp GGAAGACTCAGAAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTGATGGTGGGGAGATGGGGACTGTGTTaGGAGCTGATGTCTTTAGAT +
Preference number: 2 (lower is better)
Translates to: GRLRRPGPNSGSIVVMVGRWGLC*ELMSLD
Trigger: ATCTAAAGACATCAGCTCTCAACACAGTCCCCATCT...CCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGAGTCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp GAAAGAGGCAAAGGAGCACCCTTGGCCTTTTCAGGTGAAGGTAGCAGGGGCCATAGGACTGTATGGTTGTaGTTGCTGGGAGATGAAGAC +
Preference number: 2 (lower is better)
Translates to: ERGKGAPLAFSGEGSRGHRTVWL*LLGDED
Trigger: GTCTTCATCTCCCAGCAATCACAACCATACAGTCCT...ATGGCCCCTGCTACCTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp GGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGACAGTTGGTCATCTAGAGTaGGGAACACCTCTGAGAAGG +
Preference number: 2 (lower is better)
Translates to: GFRGLRNLWCGTLILSLTVGHLE*GTPLRR
Trigger: CCTTCTCAGAGGTGTTCCCCACTCTAGATGACCAAC...TGTCAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp ACATTATCAGAGGAGGCAGCTGGCTCCACCCTAGTCCATTGGAGGGAATGGGAATATGGTTGTGATTGCTaGGAGATGAAGACCCCCTGG +
Preference number: 2 (lower is better)
Translates to: TLSEEAAGSTLVHWREWEYGCDC*EMKTPW
Trigger: CCAGGGGGTCTTCATCTCCCAGCAATCACAACCATA...TTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCCTCTGATAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CAA 90 bp GTACTCACTCCCTGGTATATTAGGGAAAGAGGCAAAGGAGCACCCTaGGCCTTTTCAGGTGAAGGTAGCAGGGGCCATTGCTCTCAGATA +
Preference number: 2 (lower is better)
Translates to: VLTPWYIRERGKGAP*AFSGEGSRGHCSQI
Trigger: TATCTGAGAGCAATGGCCCCTGCTACCTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTCCCTAATATACCAGGGAGTGAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CAA 90 bp GAAACATGGCTATATGTACAGAGAACTGGGTGTGGCAGGAAAAGATaGTGCACTGGGTGTCAGGGACTTCCTGAAGCCCCTGGGTACTCA +
Preference number: 2 (lower is better)
Translates to: ETWLYVQRTGCGRKR*CTGCQGLPEAPGYS
Trigger: TGAGTACCCAGGGGCTTCAGGAAGTCCCTGACACCCAGTGCACAATCTTTTCCTGCCACACCCAGTTCTCTGTACATATAGCCATGTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp TGGAGAAGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGCTCCTTCCTCTGGGATaGCATCATGGGAGGGAGGCC +
Preference number: 2 (lower is better)
Translates to: WRSPKNRWSFLVMTSHEELLPLG*HHGREA
Trigger: GGCCTCCCTCCCATGATGTCATCCCAGAGGAAGGAG...CTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACTTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR TCA 90 bp ACATTATCAGAGGAGGCAGCTGGCTCCACCCTAGTCCATTGGAGGGAATGGGAAACCCCAGAGGACAACTaGAATATAGCCTGTCACAAC +
Preference number: 2 (lower is better)
Translates to: TLSEEAAGSTLVHWREWETPEDN*NIACHN
Trigger: GTTGTGACAGGCTATATTTCAGTTGTCCTCTGGGGT...TTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCCTCTGATAATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp ATGGGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGACCCCAGAGGACAACTaGAATATAGCCTGTCACAAC +
Preference number: 2 (lower is better)
Translates to: MGFRGLRNLWCGTLILSLTPEDN*NIACHN
Trigger: GTTGTGACAGGCTATATTTCAGTTGTCCTCTGGGGT...CAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp CAAGTTCTGATCCTGGTTGGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGGGTGGCATCATGGAATaGAGCTATCTTCTCCATGGC +
Preference number: 2 (lower is better)
Translates to: QVLILVGTKYQKWSGLGQGGIME*SYLLHG
Trigger: GCCATGGAGAAGATAGCTCCATTCCATGATGCCACC...CTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp CAAGTTCTGATCCTGGTTGGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGCACTGTTGGCTATTATaGCTGCTTGGAGGTGATGGC +
Preference number: 2 (lower is better)
Translates to: QVLILVGTKYQKWSGLGQHCWLL*LLGGDG
Trigger: GCCATCACCTCCAAGCAGCCATAATAGCCAACAGTG...CTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CAA 90 bp AGAGTGGGCAAACAAAAGCTGAAAGCCCCTGAACCTCTCCAGGGCTaGGAGAAAGCTGTGTGTTCCATGGGAGTGTTAAGCACACTTGAA +
Preference number: 2 (lower is better)
Translates to: RVGKQKLKAPEPLQG*EKAVCSMGVLSTLE
Trigger: TTCAAGTGTGCTTAACACTCCCATGGAACACACAGCTTTCTCCAAGCCCTGGAGAGGTTCAGGGGCTTTCAGCTTTTGTTTGCCCACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp CCTGTCACCGATCAGATGGCTGGGCAAGGGACAGTGGTAATCCAAGAAGAGTTATATGGCAGAAAGAAGTaGTGCCATCCTTTGGCTCAC +
Preference number: 2 (lower is better)
Translates to: PVTDQMAGQGTVVIQEELYGRKK*CHPLAH
Trigger: GTGAGCCAAAGGATGGCATCACTTCTTTCTGCCATA...TAACTCTTCTTGGATTACCACTGTCCCTTGCCCAGCCATCTGATCGGTGACAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp TTAGTTGGGAGGCCGAAAACCTGGTGCTGGCATTTAGGAAGATTGGTGGTAACTAGGACAGTGTGGTTCTaGTGGATCTCACCATCTGGG +
Preference number: 2 (lower is better)
Translates to: LVGRPKTWCWHLGRLVVTRTVWF*WISPSG
Trigger: CCCAGATGGTGAGATCCATCAGAACCACACTGTCCT...AGTTACCACCAATCTTCCTAAATGCCAGCACCAGGTTTTCGGCCTCCCAACTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp TTAGTTGGGAGGCCGAAAACCTGGTGCTGGCATTTAGGAAGATTGGTGGTAACTATGGCTGCTTGGAGGTaGTGGCACCACAGTTACAGT +
Preference number: 2 (lower is better)
Translates to: LVGRPKTWCWHLGRLVVTMAAWR*WHHSYS
Trigger: ACTGTAACTGTGGTGCCATCACCTCCAAGCAGCCAT...AGTTACCACCAATCTTCCTAAATGCCAGCACCAGGTTTTCGGCCTCCCAACTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR GCA 90 bp GTGGGCAAACAAAAGCTGAAAGCCCCTGAACCTCTCCAGGGCTTGGAGAAAGCTTCCTGTGATGATAATTaGAAGAGGCCTTGGTGCTCA +
Preference number: 2 (lower is better)
Translates to: VGKQKLKAPEPLQGLEKASCDDN*KRPWCS
Trigger: TGAGCACCAAGGCCTCTTGCAATTATCATCACAGGA...AGCTTTCTCCAAGCCCTGGAGAGGTTCAGGGGCTTTCAGCTTTTGTTTGCCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp GAAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGTCCAAGGGCCCATCTaGTCTCAGAGCCTTGGTGTG +
Preference number: 2 (lower is better)
Translates to: ENGFVCSGGIMEWSYLLHVQGPI*SQSLGV
Trigger: CACACCAAGGCTCTGAGACCAGATGGGCCCTTGGAC...ATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CCA 90 bp CCTGTCACCGATCAGATGGCTGGGCAAGGGACAGTGGTAATCCAAGAAGAGTTAGTGTTGTTTGGACCCTaGGAAATGATGACACCATGG +
Preference number: 2 (lower is better)
Translates to: PVTDQMAGQGTVVIQEELVLFGP*EMMTPW
Trigger: CCATGGTGTCATCATTTCCCAGGGTCCAAACAACAC...TAACTCTTCTTGGATTACCACTGTCCCTTGCCCAGCCATCTGATCGGTGACAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp GTGGGCAAACAAAAGCTGAAAGCCCCTGAACCTCTCCAGGGCTTGGAGAAAGCTAGTTCTGATCCTGGTTaGGACCAAGTACCAGAAATG +
Preference number: 2 (lower is better)
Translates to: VGKQKLKAPEPLQGLEKASSDPG*DQVPEM
Trigger: CATTTCTGGTACTTGGTCCCAACCAGGATCAGAACT...AGCTTTCTCCAAGCCCTGGAGAGGTTCAGGGGCTTTCAGCTTTTGTTTGCCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CAA 90 bp CTATTAGTTGGGAGGCCGAAAACCTGGTGCTGGCATTTAGGAAGATaGGTGGTAACTCCCTACTTTCCTCAGCATGGTGAGAGCCTGTTA +
Preference number: 2 (lower is better)
Translates to: LLVGRPKTWCWHLGR*VVTPYFPQHGESLL
Trigger: TAACAGGCTCTCACCATGCTGAGGAAAGTAGGGAGTTACCACCAATCTTCCTAAATGCCAGCACCAGGTTTTCGGCCTCCCAACTAATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp GAGGTGATGACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTTATGGCAGAAAGAAGTaGTGCCATCCTTTGGCTCAC +
Preference number: 2 (lower is better)
Translates to: EVMTTVIMVDPKPWRHWGYGRKK*CHPLAH
Trigger: GTGAGCCAAAGGATGGCATCACTTCTTTCTGCCATA...ACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTCATCACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp GGAGAGGATGATGGCACCATCGCTGAAGTACACTCTGGAAATGATAACATTATTAAGACCCCCTGGCTGTaGTGGATGCTGGGAGGTGAT +
Preference number: 2 (lower is better)
Translates to: GEDDGTIAEVHSGNDNIIKTPWL*WMLGGD
Trigger: ATCACCTCCCAGCATCCATCACAGCCAGGGGGTCTT...AATAATGTTATCATTTCCAGAGTGTACTTCAGCGATGGTGCCATCATCCTCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp CAAGTTCTGATCCTGGTTGGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGGACACTGCAATTATATaGAGTCACGAGAGACTCTGG +
Preference number: 2 (lower is better)
Translates to: QVLILVGTKYQKWSGLGQDTAII*SHERLW
Trigger: CCAGAGTCTCTCGTGACTCCATATAATTGCAGTGTC...CTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp CAAGTTCTGATCCTGGTTGGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGAGTCCCAAGAACAGGTaGTCATTTCTGGTAATGACA +
Preference number: 2 (lower is better)
Translates to: QVLILVGTKYQKWSGLGQSPKNR*SFLVMT
Trigger: TGTCATTACCAGAAATGACCACCTGTTCTTGGGACT...CTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp GAGGTGATGACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTCAGGGACACCACAGTTaGAGTGGATTTTATGAAGTG +
Preference number: 2 (lower is better)
Translates to: EVMTTVIMVDPKPWRHWGQGHHS*SGFYEV
Trigger: CACTTCATAAAATCCACTCCAACTGTGGTGTCCCTG...ACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTCATCACCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp GACCCCAACTGCTATGCCATCATGAAAGGAGGACACTGGGTGGCATTGATGATGCCTTGGTTCAAACAGTaGCAAAGTAAAAGGAGAGAT +
Preference number: 2 (lower is better)
Translates to: DPNCYAIMKGGHWVALMMPWFKQ*QSKRRD
Trigger: ATCTCTCCTTTTACTTTGTCACTGTTTGAACCAAGG...CATCATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR GCA 90 bp AATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGCTCCTGTGATGATAATTaGAAGAGGCCTTGGTGCTCA +
Preference number: 2 (lower is better)
Translates to: NGFVCSGGIMEWSYLLHGSCDDN*KRPWCS
Trigger: TGAGCACCAAGGCCTCTTGCAATTATCATCACAGGA...GCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CCA 90 bp GAGGTGATGACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTAGTCCCAAGAACAGGTaGTCATTTCTGGTAATGACA +
Preference number: 2 (lower is better)
Translates to: EVMTTVIMVDPKPWRHWGSPKNR*SFLVMT
Trigger: TGTCATTACCAGAAATGACCACCTGTTCTTGGGACT...ACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTCATCACCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR TCA 90 bp GAAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGTGCTCAGTCAGGATaGTGTCAACAAGTGTCAAGA +
Preference number: 2 (lower is better)
Translates to: ENGFVCSGGIMEWSYLLHGAQSG*CQQVSR
Trigger: TCTTGACACTTGTTGACATCATCCTGACTGAGCACC...ATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CCA 90 bp TGGAGAAGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGGTAGTGGTGGCATCATaGAATGGAGCTATCTTCTCC +
Preference number: 2 (lower is better)
Translates to: WRSPKNRWSFLVMTSHEEVVVAS*NGAIFS
Trigger: GGAGAAGATAGCTCCATTCCATGATGCCACCACTAC...CTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACTTCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR TCA 90 bp GGAGAGGATGATGGCACCATCGCTGAAGTACACTCTGGAAATGATAACATTATTGGTGCTCAGTCAGGATaGTGTCAACAAGTGTCAAGA +
Preference number: 2 (lower is better)
Translates to: GEDDGTIAEVHSGNDNIIGAQSG*CQQVSR
Trigger: TCTTGACACTTGTTGACATCATCCTGACTGAGCACC...AATAATGTTATCATTTCCAGAGTGTACTTCAGCGATGGTGCCATCATCCTCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR GCA 90 bp GAGGTGATGACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTATGACACAATCATTATaGAGTCACTACTGTTGGTCA +
Preference number: 2 (lower is better)
Translates to: EVMTTVIMVDPKPWRHWGMTQSL*SHYCWS
Trigger: TGACCAACAGTAGTGACTGCATAATGATTGTGTCAT...ACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTCATCACCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CCA 90 bp GGAGAGGATGATGGCACCATCGCTGAAGTACACTCTGGAAATGATAACATTATTGACACTGCAATTATATaGAGTCACGAGAGACTCTGG +
Preference number: 2 (lower is better)
Translates to: GEDDGTIAEVHSGNDNIIDTAII*SHERLW
Trigger: CCAGAGTCTCTCGTGACTCCATATAATTGCAGTGTC...AATAATGTTATCATTTCCAGAGTGTACTTCAGCGATGGTGCCATCATCCTCTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp TCCCCCTCTGCTGCTGCTGTGGAGAGGTCACCAAGATaGCCCTGTCACCGATCAGATGGCTGGGCAAGGGAC +
Preference number: 3 (lower is better)
Translates to: SPSAAAVERSPR*PCHRSDGWARD
Trigger: GTCCCTTGCCCAGCCATCTGATCGGTGACAGGGTCATCTTGGTGACCTCTCCACAGCAGCAGCAGAGGGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp TCAGAAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTaGTGGTGGGGGATGAGCAGAACAGGGCCTGCTGGC +
Preference number: 3 (lower is better)
Translates to: SEGQVPILEASW*WWGMSRTGPAG
Trigger: GCCAGCAGGCCCTGTTCTGCTCATCCCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp GGTGTGTATGATAAGCCTTGTAATGGAGATCTGGGCTaGGAGAAGGGGGCCTCGGAAGCCACAGCCCCCAGC +
Preference number: 3 (lower is better)
Translates to: GVYDKPCNGDLG*EKGASEATAPS
Trigger: GCTGGGGGCTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTATCATACACACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp TCTAAGGGCTGGGAAGCTCCCCCTCTGCTGCTGCTGTaGAGAGGTCACCAAGATGACCCTGTCACCGATCAG +
Preference number: 3 (lower is better)
Translates to: SKGWEAPPLLLL*RGHQDDPVTDQ
Trigger: CTGATCGGTGACAGGGTCATCTTGGTGACCTCTCCACAGCAGCAGCAGAGGGGGAGCTTCCCAGCCCTTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp ATGGAGTGGGTTAGGGCAGTGATGCCATCTAAGGGCTaGGAAGCTCCCCCTCTGCTGCTGCTGTGGAGAGGT +
Preference number: 3 (lower is better)
Translates to: MEWVRAVMPSKG*EAPPLLLLWRG
Trigger: ACCTCTCCACAGCAGCAGCAGAGGGGGAGCTTCCCAGCCCTTAGATGGCATCACTGCCCTAACCCACTCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp GGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGTaGTGCCATCTAAGGGCTGGGAAGCTCCCCCTCTGC +
Preference number: 3 (lower is better)
Translates to: GTKYQKWSGLGQ*CHLRAGKLPLC
Trigger: GCAGAGGGGGAGCTTCCCAGCCCTTAGATGGCATCACTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp GCCTTGGTGTGTATGATAAGCCTTGTAATGGAGATCTaGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGCCC +
Preference number: 3 (lower is better)
Translates to: ALVCMISLVMEI*AGRRGPRKPQP
Trigger: GGGCTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTATCATACACACCAAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp GGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGTaGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCAT +
Preference number: 3 (lower is better)
Translates to: GSPLSPRTLAAL*IRAAVELKLIH
Trigger: ATGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR GCA 72 bp TCTCTGGCCTCTTCCCAGGTGGCCTTGGGCTACACATaGCCAACTTTCTCACGACATGGCACAGCGATAGAG +
Preference number: 3 (lower is better)
Translates to: SLASSQVALGYT*PTFSRHGTAIE
Trigger: CTCTATCGCTGTGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTGGGAAGAGGCCAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CAA 90 bp TGGTGGTCACACCACAGAAGGGCCTCACTCTGGAGAAGTCCCAAGAACAGGTGGCATGGGAGGGAGGCCTaGGTTCAAACAGTGACAAAG +
Preference number: 3 (lower is better)
Translates to: WWSHHRRASLWRSPKNRWHGREA*VQTVTK
Trigger: CTTTGTCACTGTTTGAACCAAGGCCTCCCTCCCATG...CCACCTGTTCTTGGGACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CAA 90 bp GAAGTGATGCCATCCTTTGGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGCTAGTAGACATCCTGTaGGCTATGCCCCTGGGGTCA +
Preference number: 3 (lower is better)
Translates to: EVMPSFGSPLSPRTLAALLVDIL*AMPLGS
Trigger: TGACCCCAGGGGCATAGCCAACAGGATGTCTACTAG...CAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CAA 90 bp GGAAGACTCAGAAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTGATGGTGGGGGGACACTGGGTGGCATaGATGATGTCATTGGCAAGG +
Preference number: 3 (lower is better)
Translates to: GRLRRPGPNSGSIVVMVGGHWVA*MMSLAR
Trigger: CCTTGCCAATGACATCATCAATGCCACCCAGTGTCC...CCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGAGTCTTCC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CAA 90 bp GGAAGACTCAGAAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTGATGGTGGGGTGTGGCAGGAAAAGATaGTGCACTGGGTGTCAGGGA +
Preference number: 3 (lower is better)
Translates to: GRLRRPGPNSGSIVVMVGCGRKR*CTGCQG
Trigger: TCCCTGACACCCAGTGCACAATCTTTTCCTGCCACA...CCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGAGTCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp GATGGTGAGGACTGTATGGTTGTGATTGCTGGGAGATaGAGACCCCCTGGCTGTGATGGATGCTGGGAGGTG +
Preference number: 3 (lower is better)
Translates to: DGEDCMVVIAGR*RPPGCDGCWEV
Trigger: CACCTCCCAGCATCCATCACAGCCAGGGGGTCTTCATCTCCCAGCAATCACAACCATACAGTCCTCACCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp GAGATCTCATCTACTGTAACATCCCAAAAGGAGGCGTaGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGAGC +
Preference number: 3 (lower is better)
Translates to: EISSTVTSQKEA*SPVQGPIWSQS
Trigger: GCTCTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATGTTACAGTAGATGAGATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp GGTGTCTCCTGGTGTCATTTCCAAGTGGGTGGTAACTaGTGGTCACACCACAGAAGGGCCTCACTCTGGAGA +
Preference number: 3 (lower is better)
Translates to: GVSWCHFQVGGN*WSHHRRASLWR
Trigger: TCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCAGTTACCACCCACTTGGAAATGACACCAGGAGACACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp CTCAGGACAGGTTACTTTCTCTGGCCTCTTCCCAGGTaGCCTTGGGCTACACATGCCCAACTTTCTCACGAC +
Preference number: 3 (lower is better)
Translates to: LRTGYFLWPLPR*PWATHAQLSHD
Trigger: GTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTGGGAAGAGGCCAGAGAAAGTAACCTGTCCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp GGGACAGAGTGGGGTGACATTATCAGAGGAGGCAGCTaGCTCCACCCTAGTCCATTGGAGGGAATGGGAAAT +
Preference number: 3 (lower is better)
Translates to: GTEWGDIIRGGS*LHPSPLEGMGN
Trigger: ATTTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCCTCTGATAATGTCACCCCACTCTGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp GGTGAGAGCCTGTTACCATCTATCCCATCCAGGCTCTaGGCAAGAAGGGATGGCCACAGGGGCCAATATTTG +
Preference number: 3 (lower is better)
Translates to: GESLLPSIPSRL*ARRDGHRGQYL
Trigger: CAAATATTGGCCCCTGTGGCCATCCCTTCTTGCCCAGAGCCTGGATGGGATAGATGGTAACAGGCTCTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CAA 90 bp GAAGTGATGCCATCCTTTGGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGCATGGGAGGGAGGCCTaGGTTCAAACAGTGACAAAG +
Preference number: 3 (lower is better)
Translates to: EVMPSFGSPLSPRTLAALHGREA*VQTVTK
Trigger: CTTTGTCACTGTTTGAACCAAGGCCTCCCTCCCATG...CAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR TCA 72 bp CTCACCATCTGGGAGATGGTGAGGACTGTATGGTTGTaGTTGCTGGGAGATGAAGACCCCCTGGCTGTGATG +
Preference number: 3 (lower is better)
Translates to: LTIWEMVRTVWL*LLGDEDPLAVM
Trigger: CATCACAGCCAGGGGGTCTTCATCTCCCAGCAATCACAACCATACAGTCCTCACCATCTCCCAGATGGTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp GAAAGCTGTGTGTTCCATGGGAGTGTTAAGCACACTTaGAGGGAGGCCCTAGAATGGATGCGGAGCCCATGG +
Preference number: 3 (lower is better)
Translates to: ESCVFHGSVKHT*REALEWMRSPW
Trigger: CCATGGGCTCCGCATCCATTCTAGGGCCTCCCTTCAAGTGTGCTTAACACTCCCATGGAACACACAGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp GTCTCCTGGTGTCATTTCCAAGTGGGTGGTAACTGGTaGTCACACCACAGAAGGGCCTCACTCTGGAGAAGT +
Preference number: 3 (lower is better)
Translates to: VSWCHFQVGGNW*SHHRRASLWRS
Trigger: ACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCAGTTACCACCCACTTGGAAATGACACCAGGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp ACAGGTTACTTTCTCTGGCCTCTTCCCAGGTGGCCTTaGGCTACACATGCCCAACTTTCTCACGACATGGCA +
Preference number: 3 (lower is better)
Translates to: TGYFLWPLPRWP*ATHAQLSHDMA
Trigger: TGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTGGGAAGAGGCCAGAGAAAGTAACCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp AGAGCATGGCCCAAGCCAGCAAGTTCTGATCCTGGTTaGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCA +
Preference number: 3 (lower is better)
Translates to: RAWPKPASSDPG*DQVPEMEWVRA
Trigger: TGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTGCTGGCTTGGGCCATGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp AAGAATGGGGTTCAGAGGCCTGAGGAACCTCTGGTGTaGCACTTTGATCTTGTCTCTGACACCCCCTCTGCA +
Preference number: 3 (lower is better)
Translates to: KNGVQRPEEPLV*HFDLVSDTPSA
Trigger: TGCAGAGGGGGTGTCAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCCCATTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp GGAGTAAGAATGGGGTTCAGAGGCCTGAGGAACCTCTaGTGTGGCACTTTGATCTTGTCTCTGACACCCCCT +
Preference number: 3 (lower is better)
Translates to: GVRMGFRGLRNL*CGTLILSLTPP
Trigger: AGGGGGTGTCAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCCCATTCTTACTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CAA 90 bp ATGGGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGTGTGGCAGGAAAAGATaGTGCACTGGGTGTCAGGGA +
Preference number: 3 (lower is better)
Translates to: MGFRGLRNLWCGTLILSLCGRKR*CTGCQG
Trigger: TCCCTGACACCCAGTGCACAATCTTTTCCTGCCACA...CAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp CTCTCTAGACAGAGCATGGCCCAAGCCAGCAAGTTCTaGTCCTGGTTGGGACCAAGTACCAGAAATGGAGTG +
Preference number: 3 (lower is better)
Translates to: LSRQSMAQASKF*SWLGPSTRNGV
Trigger: CACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTGCTGGCTTGGGCCATGCTCTGTCTAGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp CAGGAAAAGATTGTGCACTGGGTGTCAGGGACTTCCTaGAGCCCCTGGGTACTCACTCCCTGGTATATTAGG +
Preference number: 3 (lower is better)
Translates to: QEKIVHWVSGTS*SPWVLTPWYIR
Trigger: CCTAATATACCAGGGAGTGAGTACCCAGGGGCTTCAGGAAGTCCCTGACACCCAGTGCACAATCTTTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp GGTAACTGGTGGTCACACCACAGAAGGGCCTCACTCTaGAGAAGTCCCAAGAACAGGTGGTCATTTCTGGTA +
Preference number: 3 (lower is better)
Translates to: GNWWSHHRRASL*RSPKNRWSFLV
Trigger: TACCAGAAATGACCACCTGTTCTTGGGACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCAGTTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp TCTGATCCTGGTTGGGACCAAGTACCAGAAATGGAGTaGGTTAGGGCAGTGATGCCATCTAAGGGCTGGGAA +
Preference number: 3 (lower is better)
Translates to: SDPGWDQVPEME*VRAVMPSKGWE
Trigger: TTCCCAGCCCTTAGATGGCATCACTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp CCTGGTATATTAGGGAAAGAGGCAAAGGAGCACCCTTaGCCTTTTCAGGTGAAGGTAGCAGGGGCCATTGCT +
Preference number: 3 (lower is better)
Translates to: PGILGKEAKEHP*PFQVKVAGAIA
Trigger: AGCAATGGCCCCTGCTACCTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTCCCTAATATACCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CAA 90 bp GGAAGACTCAGAAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTGATGGTGGGGCGCAGGAAGAAATTTTaGTTTGTAGGGATGATGGGA +
Preference number: 3 (lower is better)
Translates to: GRLRRPGPNSGSIVVMVGRRKKF*FVGMMG
Trigger: TCCCATCATCCCTACAAACAAAAATTTCTTCCTGCG...CCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGAGTCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR-3UTR CAA 90 bp AGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGGCACAGCCTGTGATGGCGCCATaGGGCAAGGCACCTATTCTG +
Preference number: 3 (lower is better)
Translates to: SPKNRWSFLVMTSHEEAQPVMAP*GKAPIL
Trigger: CAGAATAGGTGCCTTGCCCAATGGCGCCATCACAGG...CTGTGCCTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR TCA 72 bp GGTAGATGGCACACAATTGCCACGGGTCCTAGAAGATaGGGACACACGGTTTTACATGGATTCTGGGAGAGG +
Preference number: 3 (lower is better)
Translates to: GRWHTIATGPRR*GHTVLHGFWER
Trigger: CCTCTCCCAGAATCCATGTAAAACCGTGTGTCCTCATCTTCTAGGACCCGTGGCAATTGTGTGCCATCTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp CATGGAGACACTGGGGTTGAAGTAGGTCCTGGAGAATaGAGACACTGTTGGCTATTATGGCTGCTTGGAGGT +
Preference number: 3 (lower is better)
Translates to: HGDTGVEVGPGE*RHCWLLWLLGG
Trigger: ACCTCCAAGCAGCCATAATAGCCAACAGTGTCTTCATTCTCCAGGACCTACTTCAACCCCAGTGTCTCCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp GGTGAAGCTGATCCAGGTATCTATTCGGATCAGGAATaGGGCAGTGACACATTAAGAAGGGACAGAGTGGGG +
Preference number: 3 (lower is better)
Translates to: GEADPGIYSDQE*GSDTLRRDRVG
Trigger: CCCCACTCTGTCCCTTCTTAATGTGTCACTGCCTCATTCCTGATCCGAATAGATACCTGGATCAGCTTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp AAGATTGGTGGTAACTCCCTACTTTCCTCAGCATGGTaGGAGCCTGTTACCATCTATCCCATCCAGGCTCTG +
Preference number: 3 (lower is better)
Translates to: KIGGNSLLSSAW*EPVTIYPIQAL
Trigger: CAGAGCCTGGATGGGATAGATGGTAACAGGCTCTCACCATGCTGAGGAAAGTAGGGAGTTACCACCAATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp CTCATATACAGGCCTCCTTCCTCTGGGATGACATCATaGGAGGGAGGCCTTGGTTCAAACAGTGACAAAGTA +
Preference number: 3 (lower is better)
Translates to: LIYRPPSSGMTS*EGGLGSNSDKV
Trigger: TACTTTGTCACTGTTTGAACCAAGGCCTCCCTCCCATGATGTCATCCCAGAGGAAGGAGGCCTGTATATGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp GACCCCAACTGCTATGCCATCATGAAAGGAGGACACTaGGTGGCATTGATGATGTCATTGGCAAGGTCAACA +
Preference number: 3 (lower is better)
Translates to: DPNCYAIMKGGH*VALMMSLARST
Trigger: TGTTGACCTTGCCAATGACATCATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CAA 90 bp CCTGTCACCGATCAGATGGCTGGGCAAGGGACAGTGGTAATCCAAGAAGAGTTAAGAATGAAGACACTGTaGGCTATTATGGCTGCTTGG +
Preference number: 3 (lower is better)
Translates to: PVTDQMAGQGTVVIQEELRMKTL*AIMAAW
Trigger: CCAAGCAGCCATAATAGCCAACAGTGTCTTCATTCT...TAACTCTTCTTGGATTACCACTGTCCCTTGCCCAGCCATCTGATCGGTGACAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp ATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTTaGAGTAGGTCCTGGAGAATGAAGACACTGTTGGCT +
Preference number: 3 (lower is better)
Translates to: IMVDPKPWRHWG*SRSWRMKTLLA
Trigger: AGCCAACAGTGTCTTCATTCTCCAGGACCTACTTCAACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR GCA 72 bp TTCTGGGAAATGACACAGTTAACATTGGACCCCAACTaGTATGCCATCATGAAAGGAGGACACTGGGTGGCA +
Preference number: 3 (lower is better)
Translates to: FWEMTQLTLDPN*YAIMKGGHWVA
Trigger: TGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTCCAATGTTAACTGTGTCATTTCCCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR GCA 72 bp ATGGAGCATCTATTAGTTGGGAGGCCGAAAACCTGGTaGTGGCATTTAGGAAGATTGGTGGTAACTCCCTAC +
Preference number: 3 (lower is better)
Translates to: MEHLLVGRPKTW*WHLGRLVVTPY
Trigger: GTAGGGAGTTACCACCAATCTTCCTAAATGCCAGCACCAGGTTTTCGGCCTCCCAACTAATAGATGCTCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CCA 72 bp TCTTTAGATATGGCAGAAAGAAGTGATGCCATCCTTTaGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCT +
Preference number: 3 (lower is better)
Translates to: SLDMAERSDAIL*LTLESQDFSSP
Trigger: AGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTCTTTCTGCCATATCTAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CAA 90 bp GAAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATCATGGGAGGGAGGCCTaGGTTCAAACAGTGACAAAG +
Preference number: 3 (lower is better)
Translates to: ENGFVCSGGIMEWSYLLHHGREA*VQTVTK
Trigger: CTTTGTCACTGTTTGAACCAAGGCCTCCCTCCCATG...ATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR-3UTR CAA 90 bp TTAGTTGGGAGGCCGAAAACCTGGTGCTGGCATTTAGGAAGATTGGTGGTAACTCATCATGATGATGTGTaGTTTGGACCCTGGGAAATG +
Preference number: 3 (lower is better)
Translates to: LVGRPKTWCWHLGRLVVTHHDDV*FGPWEM
Trigger: CATTTCCCAGGGTCCAAACAACACATCATCATGATG...AGTTACCACCAATCTTCCTAAATGCCAGCACCAGGTTTTCGGCCTCCCAACTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR GCA 72 bp GGAAATGACACAGTTAACATTGGACCCCAACTGCTATaGCATCATGAAAGGAGGACACTGGGTGGCATTGAT +
Preference number: 3 (lower is better)
Translates to: GNDTVNIGPQLL*HHERRTLGGID
Trigger: ATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTCCAATGTTAACTGTGTCATTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp CCCAGGAAAATGGCTTTGTCTGTAGTGGTGGCATCATaGAATGGAGCTATCTTCTCCATGGCAGAGAAACAT +
Preference number: 3 (lower is better)
Translates to: PRKMALSVVVAS*NGAIFSMAEKH
Trigger: ATGTTTCTCTGCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTCCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp GACACTATTAGATGGATACTGGGATGTGATGATACATaGTCACAAGAATCCAGGGACACCACAGTTGGAGTG +
Preference number: 3 (lower is better)
Translates to: DTIRWILGCDDT*SQESRDTTVGV
Trigger: CACTCCAACTGTGGTGTCCCTGGATTCTTGTGACCATGTATCATCACATCCCAGTATCCATCTAATAGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp ATGATAATTGCAAGAGGCCTTGGTGCTCAGTCAGGATaGTGTCAACAAGTGTCAAGAAGTGTGAGACTTGTC +
Preference number: 3 (lower is better)
Translates to: MIIARGLGAQSG*CQQVSRSVRLV
Trigger: GACAAGTCTCACACTTCTTGACACTTGTTGACATCATCCTGACTGAGCACCAAGGCCTCTTGCAATTATCAT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR TCA 72 bp AAGAATCCAGGGACACCACAGTTGGAGTGGATTTTATaGAGTGGTGACATCATAGCTATGATGGCTACTGAG +
Preference number: 3 (lower is better)
Translates to: KNPGTPQLEWIL*SGDIIAMMATE
Trigger: CTCAGTAGCCATCATAGCTATGATGTCACCACTTCATAAAATCCACTCCAACTGTGGTGTCCCTGGATTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR TCA 72 bp AGGAACTGTAAATGCCATGAGACCCCAGAGGACAACTaGAATATAGCCTGTCACAACATTTGGACCCTAAGA +
Preference number: 3 (lower is better)
Translates to: RNCKCHETPEDN*NIACHNIWTLR
Trigger: TCTTAGGGTCCAAATGTTGTGACAGGCTATATTTCAGTTGTCCTCTGGGGTCTCATGGCATTTACAGTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR GCA 72 bp TCCATGGCAGAGAAACATTTTTCCTGTGATGATAATTaGAAGAGGCCTTGGTGCTCAGTCAGGATGATGTCA +
Preference number: 3 (lower is better)
Translates to: SMAEKHFSCDDN*KRPWCSVRMMS
Trigger: TGACATCATCCTGACTGAGCACCAAGGCCTCTTGCAATTATCATCACAGGAAAAATGTTTCTCTGCCATGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp ATCACAGGAGGGAGGCAAAGTCCTGTGATAGTATTGTaGAAAGGAGGCCTAATTGTTAGTGAGGACATAACT +
Preference number: 3 (lower is better)
Translates to: ITGGRQSPVIVL*KGGLIVSEDIT
Trigger: AGTTATGTCCTCACTAACAATTAGGCCTCCTTTCCACAATACTATCACAGGACTTTGCCTCCCTCCTGTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp AATCATTATGCAGTCACTACTGTTGGTCATCTAGAGTaGGGAACACCTCTGAGAAGGAAGCACTCTATGATG +
Preference number: 3 (lower is better)
Translates to: NHYAVTTVGHLE*GTPLRRKHSMM
Trigger: CATCATAGAGTGCTTCCTTCTCAGAGGTGTTCCCCACTCTAGATGACCAACAGTAGTGACTGCATAATGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp ACTCTGATGACACAATCATTATGCAGTCACTACTGTTaGTCATCTAGAGTGGGGAACACCTCTGAGAAGGAA +
Preference number: 3 (lower is better)
Translates to: TLMTQSLCSHYC*SSRVGNTSEKE
Trigger: TTCCTTCTCAGAGGTGTTCCCCACTCTAGATGACCAACAGTAGTGACTGCATAATGATTGTGTCATCAGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp GAAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATaGAGCTATCTTCTCCATGGCAGAGAAACATTTTTC +
Preference number: 3 (lower is better)
Translates to: ENGFVCSGGIME*SYLLHGRETFF
Trigger: GAAAAATGTTTCTCTGCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CCA 72 bp AAGTACACTCTGGAAATGATAACATTATTGTTGCCATaGGTCCAGGGAGGTGATGACAACTGTGATTATGGT +
Preference number: 3 (lower is better)
Translates to: KYTLEMITLLLP*VQGGDDNCDYG
Trigger: ACCATAATCACAGTTGTCATCACCTCCCTGGACCCATGGCAACAATAATGTTATCATTTCCAGAGTGTACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp TGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGCCCCCAGCCTGGCGCTGGAAGGGTaGCCTGCGGGCCAGTGTGCC +
Preference number: 4 (lower is better)
Translates to: CNGDLGWEKGASEATAPSLALEG*PAGQCA
Trigger: GGCACACTGGCCCGCAGGCCACCCTTCCAGCGCCAG...GCTGGGGGCTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp CATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGAGCCGAGCTCTGGGCACGTTaGTCTCCCGGTGCGCCCTGG +
Preference number: 4 (lower is better)
Translates to: HPKRRRGLRSKGPSGLRAELWAR*SPGAPW
Trigger: CCAGGGCGCACCGGGAGATCAACGTGCCCAGAGCTC...GGCTCTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGAGCCACGCCGTGGGTTGGGTaGTGGTGCCAGGCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: HPKRRRGLRSKGPSGLRATPWVG*WCQAQL
Trigger: GAGCTGGGCCTGGCACCAGCACCCAACCCACGGCGT...GGCTCTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp ATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGGTGCCGCTGCGCCCGTaGCACTCGCGGGGCTGGTCT +
Preference number: 4 (lower is better)
Translates to: ISLVMEIWAGRRGPRKPQVPLRP*HSRGWS
Trigger: AGACCAGCCCCGCGAGTGGCACGGGCGCAGCGGCAC...CTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CCCCAGGGCTCACTGCACAGGCCCAGTCTGCCTTTACTGGGGCTAGTAGACATCCTGGCAGTGCGCAGGTaGTGGGGCAGGTGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: PQGSLHRPSLPLLGLVDILAVRR*WGRWCP
Trigger: TGGGCACCACCTGCCCCAGCACCTGCGCACTGCCAG...GATGTCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp ATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGGCTTGTGTCGTTGGATaGGCGCGCCCCCGCCGGGCC +
Preference number: 4 (lower is better)
Translates to: ISLVMEIWAGRRGPRKPQACVVG*ARPRRA
Trigger: GGCCCGGCGGGGGCGCGCCCATCCAACGACACAAGC...CTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CCCCAGGGCTCACTGCACAGGCCCAGTCTGCCTTTACTGGGGCTAGTAGACATCACACCACGTAGGCTGTaGTGCCCCCTGGGCCCTCTC +
Preference number: 4 (lower is better)
Translates to: PQGSLHRPSLPLLGLVDITPRRL*CPLGPL
Trigger: GAGAGGGCCCAGGGGGCAGCACAGCCTACGTGGTGT...GATGTCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp CATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGAGCCTCAGAGAACTGCTTCTaGCCCGGTCCGGGCGGGTTG +
Preference number: 4 (lower is better)
Translates to: HPKRRRGLRSKGPSGLRASENCF*PGPGGL
Trigger: CAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCTGA...GGCTCTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp CCCCAGGGCTCACTGCACAGGCCCAGTCTGCCTTTACTGGGGCTAGTAGACATCCCGGGTGGTGGGATCTaGGGGCAGTGCAGGACTTCG +
Preference number: 4 (lower is better)
Translates to: PQGSLHRPSLPLLGLVDIPGGGI*GQCRTS
Trigger: CGAAGTCCTGCACTGCCCCCAGATCCCACCACCCGG...GATGTCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp TGGTGGTCACACCACAGAAGGGCCTCACTCTGGAGAAGTCCCAAGAACAGGTGGCTGGCGCTGGAAGGGTaGCCTGCGGGCCAGTGTGCC +
Preference number: 4 (lower is better)
Translates to: WWSHHRRASLWRSPKNRWLALEG*PAGQCA
Trigger: GGCACACTGGCCCGCAGGCCACCCTTCCAGCGCCAG...CCACCTGTTCTTGGGACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GAAAGAGGCAAAGGAGCACCCTTGGCCTTTTCAGGTGAAGGTAGCAGGGGCCATAGGGTGCCCTGGCGCTaGAAGGGTGGCCTGCGGGCC +
Preference number: 4 (lower is better)
Translates to: ERGKGAPLAFSGEGSRGHRVPWR*KGGLRA
Trigger: GGCCCGCAGGCCACCCTTCCAGCGCCAGGGCACCCT...ATGGCCCCTGCTACCTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR GCA 90 bp ATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGCTGGCAGTGCGCAGGTaGTGGGGCAGGTGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: ISLVMEIWAGRRGPRKPQLAVRR*WGRWCP
Trigger: TGGGCACCACCTGCCCCAGCACCTGCGCACTGCCAG...CTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GGAAGACTCAGAAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTGATGGTGGGGTCTCCCGGTGCGCCCTaGGTGCACGTGACGCCTTGC +
Preference number: 4 (lower is better)
Translates to: GRLRRPGPNSGSIVVMVGSPGAP*VHVTPC
Trigger: GCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGA...CCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGAGTCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp CAGGACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCACACGCCAGTCCAGTGTaGCGGCGTGGTGCTTGGGGC +
Preference number: 4 (lower is better)
Translates to: QDFSSPVDQSGCGAEAHPHASPV*RRGAWG
Trigger: GCCCCAAGCACCACGCCGCCACACTGGACTGGCGTG...TGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp ATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGGTGAGGCAGCCAGGCTaGCCCGGGTGGTGGGATCTG +
Preference number: 4 (lower is better)
Translates to: ISLVMEIWAGRRGPRKPQVRQPG*PGWWDL
Trigger: CAGATCCCACCACCCGGGCCAGCCTGGCTGCCTCAC...CTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GAAGTGATGCCATCCTTTGGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGCTGGCGCTGGAAGGGTaGCCTGCGGGCCAGTGTGCC +
Preference number: 4 (lower is better)
Translates to: EVMPSFGSPLSPRTLAALLALEG*PAGQCA
Trigger: GGCACACTGGCCCGCAGGCCACCCTTCCAGCGCCAG...CAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGACAAGGGTGCCCTGGCGCTaGAAGGGTGGCCTGCGGGCC +
Preference number: 4 (lower is better)
Translates to: GFRGLRNLWCGTLILSLTRVPWR*KGGLRA
Trigger: GGCCCGCAGGCCACCCTTCCAGCGCCAGGGCACCCT...TGTCAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp CAGGACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCATGCTCCAGGGTGCCCTaGCGCTGGAAGGGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: QDFSSPVDQSGCGAEAHPCSRVP*RWKGGL
Trigger: CAGGCCACCCTTCCAGCGCCAGGGCACCCTGGAGCA...TGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp GTAACATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGGCGAAGCGCCTCAGGTaGGGACAGCAGCAGGTGTTC +
Preference number: 4 (lower is better)
Translates to: VTSQKEAWSPVQGPIWSQAKRLR*GQQQVF
Trigger: GAACACCTGCTGCTGTCCTCACCTGAGGCGCTTCGC...CTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATGTTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CTTGGTGTGTATGATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCGTCAAGCGCCGCAGGTaGGCGAGTAGCGCGGGCAGC +
Preference number: 4 (lower is better)
Translates to: LGVYDKPCNGDLGWEKGAVKRRR*ASSAGS
Trigger: GCTGCCCGCGCTACTCGCGCACCTGCGGCGCTTGAC...GGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTATCATACACACCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp GACCCCAACTGCTATGCCATCATGAAAGGAGGACACTGGGTGGCATTGATGATGCCCTTCCAGCCACCCTaGCTGGCCCGGCCCTGGTCC +
Preference number: 4 (lower is better)
Translates to: DPNCYAIMKGGHWVALMMPFQPP*LARPWS
Trigger: GGACCAGGGCCGGGCCAGGCAGGGTGGCTGGAAGGG...CATCATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CAGGACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCACTGGGGTCAGAGAACTaGTTCTGGCCCGGTCCGGGC +
Preference number: 4 (lower is better)
Translates to: QDFSSPVDQSGCGAEAHPLGSEN*FWPGPG
Trigger: GCCCGGACCGGGCCAGAAGCAGTTCTCTGACCCCAG...TGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CAGGTGGCCTTGGGCTACACATGCCCAACTTTCTCACGACATGGCACAGCGATAACGCCGTGGGTTGGGTaGTGGTGCCAGGCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: QVALGYTCPTFSRHGTAITPWVG*WCQAQL
Trigger: GAGCTGGGCCTGGCACCAGCACCCAACCCACGGCGT...TATCGCTGTGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp TGGTGGTCACACCACAGAAGGGCCTCACTCTGGAGAAGTCCCAAGAACAGGTGGGGGGGTGACAGCAGGTaGTCGCGACTCTGGCGAAGC +
Preference number: 4 (lower is better)
Translates to: WWSHHRRASLWRSPKNRWGGDSR*SRLWRS
Trigger: GCTTCGCCAGAGTCGCGAGCACCTGCTGTCACCCCC...CCACCTGTTCTTGGGACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCA
61% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp GACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCATGGGGGGGTGACAGCAGGTaGTCGCGACTCTGGCGAAGC +
Preference number: 4 (lower is better)
Translates to: DFSSPVDQSGCGAEAHPWGGDSR*SRLWRS
Trigger: GCTTCGCCAGAGTCGCGAGCACCTGCTGTCACCCCC...CCATGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTC
61% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CAGGACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCAGGGGGTGACAGCAGGTaGTCGCGACTCTGGCGAAGC +
Preference number: 4 (lower is better)
Translates to: QDFSSPVDQSGCGAEAHPGGDSR*SRLWRS
Trigger: GCTTCGCCAGAGTCGCGAGCACCTGCTGTCACCCCC...TGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp CCCCAGGGCTCACTGCACAGGCCCAGTCTGCCTTTACTGGGGCTAGTAGACATCGTTCTTGGGTGTCCTTaGGGCCATGCTGTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: PQGSLHRPSLPLLGLVDIVLGCP*GHAVWA
Trigger: GGCCCAGACAGCATGGCCCCAAGGACACCCAAGAAC...GATGTCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp TGGTGGTCACACCACAGAAGGGCCTCACTCTGGAGAAGTCCCAAGAACAGGTGGCCGGGTGGTGGGATCTaGGGGCAGTGCAGGACTTCG +
Preference number: 4 (lower is better)
Translates to: WWSHHRRASLWRSPKNRWPGGGI*GQCRTS
Trigger: CGAAGTCCTGCACTGCCCCCAGATCCCACCACCCGG...CCACCTGTTCTTGGGACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp ATGGGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGGAGCTCTGGGCACGTTaGTCTCCCGGTGCGCCCTGG +
Preference number: 4 (lower is better)
Translates to: MGFRGLRNLWCGTLILSLELWAR*SPGAPW
Trigger: CCAGGGCGCACCGGGAGATCAACGTGCCCAGAGCTC...CAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR TCA 90 bp TGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGCCCCCAGCGGTGCTTGGGGCTGTTaGCGTTGTAGTGCAGGTTAT +
Preference number: 4 (lower is better)
Translates to: CNGDLGWEKGASEATAPSGAWGC*RCSAGY
Trigger: ATAACCTGCACTACAACGTCAACAGCCCCAAGCACC...GCTGGGGGCTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR TCA 90 bp GACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCATGGAGGACTTCGTGGGGGTaGCAGCAGGTGCTCGCGACT +
Preference number: 4 (lower is better)
Translates to: DFSSPVDQSGCGAEAHPWRTSWG*QQVLAT
Trigger: AGTCGCGAGCACCTGCTGTCACCCCCACGAAGTCCT...CCATGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CAGGTGGCCTTGGGCTACACATGCCCAACTTTCTCACGACATGGCACAGCGATAACACCACGTAGGCTGTaGTGCCCCCTGGGCCCTCTC +
Preference number: 4 (lower is better)
Translates to: QVALGYTCPTFSRHGTAITPRRL*CPLGPL
Trigger: GAGAGGGCCCAGGGGGCAGCACAGCCTACGTGGTGT...TATCGCTGTGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGAGCCCAGTCACTTCGTTCTTaGTGGCAGTGCGCAGGTGCT +
Preference number: 4 (lower is better)
Translates to: HPKRRRGLRSKGPSGLRAQSLRS*WQCAGA
Trigger: AGCACCTGCGCACTGCCAGCAAGAACGAAGTGACTG...GGCTCTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GAAAGGAGGACACTGGGTGGCATTGATGATGTCATTGGCAAGGTCAACAGCACAGCTTGTGTCGTTGGATaGGCGCGCCCCCGCCGGGCC +
Preference number: 4 (lower is better)
Translates to: ERRTLGGIDDVIGKVNSTACVVG*ARPRRA
Trigger: GGCCCGGCGGGGGCGCGCCCATCCAACGACACAAGC...TGTGCTGTTGACCTTGCCAATGACATCATCAATGCCACCCAGTGTCCTCCTTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp ATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGTGCGCCAGGCGCATGTaGCGGTGCTCGCAGCAGAAA +
Preference number: 4 (lower is better)
Translates to: ISLVMEIWAGRRGPRKPQCARRM*RCSQQK
Trigger: TTTCTGCTGCGAGCACCGCCACATGCGCCTGGCGCA...CTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp ATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGGTGGCGTGTCGTAGTTaGAGCAGGAGGCCTGCGCCA +
Preference number: 4 (lower is better)
Translates to: ISLVMEIWAGRRGPRKPQVACRS*SRRPAP
Trigger: TGGCGCAGGCCTCCTGCTCCAACTACGACACGCCAC...CTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp TCCTCTGGGATGACATCATGGGAGGGAGGCCTTGGTTCAAACAGTGACAAAGTATCCAGCCACCCTGCCTaGCCCGGCCCTGGTCCCCCA +
Preference number: 4 (lower is better)
Translates to: SSGMTSWEGGLGSNSDKVSSHPA*PGPGPP
Trigger: TGGGGGACCAGGGCCGGGCCAGGCAGGGTGGCTGGA...TACTTTGTCACTGTTTGAACCAAGGCCTCCCTCCCATGATGTCATCCCAGAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp ACATTATCAGAGGAGGCAGCTGGCTCCACCCTAGTCCATTGGAGGGAATGGGAATCTCCCGGTGCGCCCTaGGTGCACGTGACGCCTTGC +
Preference number: 4 (lower is better)
Translates to: TLSEEAAGSTLVHWREWESPGAP*VHVTPC
Trigger: GCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGA...TTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCCTCTGATAATGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp GGAAGACTCAGAAGGCCAGGTCCCAATTCTGGAAGCATCGTGGTGATGGTGGGGAGGTGCTCGCGACTCTaGCGAAGCGCCTCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: GRLRRPGPNSGSIVVMVGRCSRL*RSASGE
Trigger: CTCACCTGAGGCGCTTCGCCAGAGTCGCGAGCACCT...CCCCACCATCACCACGATGCTTCCAGAATTGGGACCTGGCCTTCTGAGTCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp GAAAGGAGGACACTGGGTGGCATTGATGATGTCATTGGCAAGGTCAACAGCACAAGGGTGCCCTGGCGCTaGAAGGGTGGCCTGCGGGCC +
Preference number: 4 (lower is better)
Translates to: ERRTLGGIDDVIGKVNSTRVPWR*KGGLRA
Trigger: GGCCCGCAGGCCACCCTTCCAGCGCCAGGGCACCCT...TGTGCTGTTGACCTTGCCAATGACATCATCAATGCCACCCAGTGTCCTCCTTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp CCCCAGGGCTCACTGCACAGGCCCAGTCTGCCTTTACTGGGGCTAGTAGACATCTCACTTCGTTCTTGCTaGCAGTGCGCAGGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: PQGSLHRPSLPLLGLVDISLRSC*QCAGAG
Trigger: CCCAGCACCTGCGCACTGCCAGCAAGAACGAAGTGA...GATGTCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CAA 72 bp GGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTaGATCTTGTCTCTGACACCCCCTCTGCAGCCCCCA +
Preference number: 4 (lower is better)
Translates to: GFRGLRNLWCGT*ILSLTPPLQPP
Trigger: TGGGGGCTGCAGAGGGGGTGTCAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR TCA 90 bp GAAGTGATGCCATCCTTTGGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGAGCCGGTGCTGCAGTTaGAGGTGGCGTCGTACTGGC +
Preference number: 4 (lower is better)
Translates to: EVMPSFGSPLSPRTLAALSRCCS*RWRRTG
Trigger: GCCAGTACGACGCCACCTTCAACTGCAGCACCGGCT...CAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp CAGGTGGCCTTGGGCTACACATGCCCAACTTTCTCACGACATGGCACAGCGATAAGCAGCAGGTGTTCCTaGGACACCAGGCGCGCTCGA +
Preference number: 4 (lower is better)
Translates to: QVALGYTCPTFSRHGTAISSRCS*DTRRAR
Trigger: TCGAGCGCGCCTGGTGTCTCAGGAACACCTGCTGCT...TATCGCTGTGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp AATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGCGTGCCGCTGCGCCCGTaGCACTCGCGGGGCTGGTCT +
Preference number: 4 (lower is better)
Translates to: NGFVCSGGIMEWSYLLHGVPLRP*HSRGWS
Trigger: AGACCAGCCCCGCGAGTGGCACGGGCGCAGCGGCAC...GCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp AGGCCTTGGTGCTCAGTCAGGATGATGTCAACAAGTGTCAAGAAGTGTGAGACTGGCTGTGCTGCCCCCTaGGCCCTCTCCCCCACGTCC +
Preference number: 4 (lower is better)
Translates to: RPWCSVRMMSTSVKKCETGCAAP*ALSPTS
Trigger: GGACGTGGGGGAGAGGGCCCAGGGGGCAGCACAGCC...AGTCTCACACTTCTTGACACTTGTTGACATCATCCTGACTGAGCACCAAGGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp TGGTGGTCACACCACAGAAGGGCCTCACTCTGGAGAAGTCCCAAGAACAGGTGGTGGGCCTCCCAGCCCTaGGGTCAGAGAACTGCTTCT +
Preference number: 4 (lower is better)
Translates to: WWSHHRRASLWRSPKNRWWASQP*GQRTAS
Trigger: AGAAGCAGTTCTCTGACCCCAGGGCTGGGAGGCCCA...CCACCTGTTCTTGGGACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp TTGGACCCCAACTGCTATGCCATCATGAAAGGAGGACACTGGGTGGCATTGATGCACGCCAGTCCAGTGTaGCGGCGTGGTGCTTGGGGC +
Preference number: 4 (lower is better)
Translates to: LDPNCYAIMKGGHWVALMHASPV*RRGAWG
Trigger: GCCCCAAGCACCACGCCGCCACACTGGACTGGCGTG...CATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp TTGGACCCCAACTGCTATGCCATCATGAAAGGAGGACACTGGGTGGCATTGATGGTGAGGCAGCCAGGCTaGCCCGGGTGGTGGGATCTG +
Preference number: 4 (lower is better)
Translates to: LDPNCYAIMKGGHWVALMVRQPG*PGWWDL
Trigger: CAGATCCCACCACCCGGGCCAGCCTGGCTGCCTCAC...CATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp CTTGGTGTGTATGATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCAGCCGGTGCTGCAGTTaGAGGTGGCGTCGTACTGGC +
Preference number: 4 (lower is better)
Translates to: LGVYDKPCNGDLGWEKGASRCCS*RWRRTG
Trigger: GCCAGTACGACGCCACCTTCAACTGCAGCACCGGCT...GGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTATCATACACACCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp CCCCAGGGCTCACTGCACAGGCCCAGTCTGCCTTTACTGGGGCTAGTAGACATCGGTGCTTGGGGCTGTTaGCGTTGTAGTGCAGGTTAT +
Preference number: 4 (lower is better)
Translates to: PQGSLHRPSLPLLGLVDIGAWGC*RCSAGY
Trigger: ATAACCTGCACTACAACGTCAACAGCCCCAAGCACC...GATGTCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR TCA 90 bp CTTGGTGTGTATGATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCAGGACTTCGTGGGGGTaGCAGCAGGTGCTCGCGACT +
Preference number: 4 (lower is better)
Translates to: LGVYDKPCNGDLGWEKGARTSWG*QQVLAT
Trigger: AGTCGCGAGCACCTGCTGTCACCCCCACGAAGTCCT...GGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTATCATACACACCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CAGGTGGCCTTGGGCTACACATGCCCAACTTTCTCACGACATGGCACAGCGATATGCTGGGGCAGGTGGTaGCCAGGAATGAACTGCAGC +
Preference number: 4 (lower is better)
Translates to: QVALGYTCPTFSRHGTAICWGRW*PGMNCS
Trigger: GCTGCAGTTCATTCCTGGGCACCACCTGCCCCAGCA...TATCGCTGTGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GAAGTGATGCCATCCTTTGGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGTGGGCCTCCCAGCCCTaGGGTCAGAGAACTGCTTCT +
Preference number: 4 (lower is better)
Translates to: EVMPSFGSPLSPRTLAALWASQP*GQRTAS
Trigger: AGAAGCAGTTCTCTGACCCCAGGGCTGGGAGGCCCA...CAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp GTAACATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGGTCCTGCTTGATGCCTaGGAATATCCACGAGAGCTC +
Preference number: 4 (lower is better)
Translates to: VTSQKEAWSPVQGPIWSQVLLDA*EYPREL
Trigger: GAGCTCTCGTGGATATTCTCAGGCATCAAGCAGGAC...CTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATGTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp CCTGTCACCGATCAGATGGCTGGGCAAGGGACAGTGGTAATCCAAGAAGAGTTAAGCAGCAGGTGTTCCTaGGACACCAGGCGCGCTCGA +
Preference number: 4 (lower is better)
Translates to: PVTDQMAGQGTVVIQEELSSRCS*DTRRAR
Trigger: TCGAGCGCGCCTGGTGTCTCAGGAACACCTGCTGCT...TAACTCTTCTTGGATTACCACTGTCCCTTGCCCAGCCATCTGATCGGTGACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR TCA 90 bp TTGGACCCCAACTGCTATGCCATCATGAAAGGAGGACACTGGGTGGCATTGATGGCGAAGCGCCTCAGGTaGGGACAGCAGCAGGTGTTC +
Preference number: 4 (lower is better)
Translates to: LDPNCYAIMKGGHWVALMAKRLR*GQQQVF
Trigger: GAACACCTGCTGCTGTCCTCACCTGAGGCGCTTCGC...CATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp AAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGCCCTTCCAGCCACCCTaGCTGGCCCGGCCCTGGTCC +
Preference number: 4 (lower is better)
Translates to: KMALSVVVASWNGAIFSMPFQPP*LARPWS
Trigger: GGACCAGGGCCGGGCCAGGCAGGGTGGCTGGAAGGG...CATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp AATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGCCTGGCAGTGCGCAGGTaGTGGGGCAGGTGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: NGFVCSGGIMEWSYLLHGLAVRR*WGRWCP
Trigger: TGGGCACCACCTGCCCCAGCACCTGCGCACTGCCAG...GCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp TTGGACCCCAACTGCTATGCCATCATGAAAGGAGGACACTGGGTGGCATTGATGCGTGGTGGCCCAGCGTaGCGTGTCGTAGTTGGAGCA +
Preference number: 4 (lower is better)
Translates to: LDPNCYAIMKGGHWVALMRGGPA*RVVVGA
Trigger: TGCTCCAACTACGACACGCCACGCTGGGCCACCACG...CATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp CTTGGTGTGTATGATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCGGGAGCAGGATAGTGTaGAGTAGTGCAGGGAGGGGC +
Preference number: 4 (lower is better)
Translates to: LGVYDKPCNGDLGWEKGAGSRIV*SSAGRG
Trigger: GCCCCTCCCTGCACTACTCCACACTATCCTGCTCCC...GGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTATCATACACACCAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp TTGGACCCCAACTGCTATGCCATCATGAAAGGAGGACACTGGGTGGCATTGATGAGGTGCTCGCGACTCTaGCGAAGCGCCTCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: LDPNCYAIMKGGHWVALMRCSRL*RSASGE
Trigger: CTCACCTGAGGCGCTTCGCCAGAGTCGCGAGCACCT...CATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp AATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGCTGCTCCAGGGTGCCCTaGCGCTGGAAGGGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: NGFVCSGGIMEWSYLLHGCSRVP*RWKGGL
Trigger: CAGGCCACCCTTCCAGCGCCAGGGCACCCTGGAGCA...GCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GAAGTGATGCCATCCTTTGGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGTCACTTCGTTCTTGCTaGCAGTGCGCAGGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: EVMPSFGSPLSPRTLAALSLRSC*QCAGAG
Trigger: CCCAGCACCTGCGCACTGCCAGCAAGAACGAAGTGA...CAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp AGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGGCACAGGAGCTCTGGGCACGTTaGTCTCCCGGTGCGCCCTGG +
Preference number: 4 (lower is better)
Translates to: SPKNRWSFLVMTSHEEAQELWAR*SPGAPW
Trigger: CCAGGGCGCACCGGGAGATCAACGTGCCCAGAGCTC...CTGTGCCTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp CAGGACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCAGTTGCAGGTCCTGCTTaGTGCCTGAGAATATCCACG +
Preference number: 4 (lower is better)
Translates to: QDFSSPVDQSGCGAEAHPVAGPA*CLRIST
Trigger: CGTGGATATTCTCAGGCATCAAGCAGGACCTGCAAC...TGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp GAGGTGATGACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTGCGAAGCGCCTCAGGTaGGGACAGCAGCAGGTGTTC +
Preference number: 4 (lower is better)
Translates to: EVMTTVIMVDPKPWRHWGAKRLR*GQQQVF
Trigger: GAACACCTGCTGCTGTCCTCACCTGAGGCGCTTCGC...ACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTCATCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR GCA 90 bp GAAGTGATGCCATCCTTTGGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGAACGGTAGTGGCAGGTaGCACAACAGAAGCGGTAGG +
Preference number: 4 (lower is better)
Translates to: EVMPSFGSPLSPRTLAALNGSGR*HNRSGR
Trigger: CCTACCGCTTCTGTTGTGGCACCTGCCACTACCGTT...CAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp GACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCATGGGCGGGTTGCAGGTCCTaGTTGATGCCTGAGAATATC +
Preference number: 4 (lower is better)
Translates to: DFSSPVDQSGCGAEAHPWAGCRS*LMPENI
Trigger: GATATTCTCAGGCATCAAGCAGGACCTGCAACCCGC...CCATGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp AATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGCCTGGGGTCAGAGAACTaGTTCTGGCCCGGTCCGGGC +
Preference number: 4 (lower is better)
Translates to: NGFVCSGGIMEWSYLLHGLGSEN*FWPGPG
Trigger: GCCCGGACCGGGCCAGAAGCAGTTCTCTGACCCCAG...GCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp GAAAGAGGCAAAGGAGCACCCTTGGCCTTTTCAGGTGAAGGTAGCAGGGGCCATCCATCACCCAGAAGGTaGTCCTGGGACATAACACGC +
Preference number: 4 (lower is better)
Translates to: ERGKGAPLAFSGEGSRGHPSPRR*SWDITR
Trigger: GCGTGTTATGTCCCAGGAGCACCTTCTGGGTGATGG...ATGGCCCCTGCTACCTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR GCA 90 bp TTGGACCCCAACTGCTATGCCATCATGAAAGGAGGACACTGGGTGGCATTGATGTGCTGGGGCAGGTGGTaGCCAGGAATGAACTGCAGC +
Preference number: 4 (lower is better)
Translates to: LDPNCYAIMKGGHWVALMCWGRW*PGMNCS
Trigger: GCTGCAGTTCATTCCTGGGCACCACCTGCCCCAGCA...CATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCAGTTGGGGTCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CAAGTTCTGATCCTGGTTGGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGTGCTGGGGCAGGTGGTaGCCAGGAATGAACTGCAGC +
Preference number: 4 (lower is better)
Translates to: QVLILVGTKYQKWSGLGQCWGRW*PGMNCS
Trigger: GCTGCAGTTCATTCCTGGGCACCACCTGCCCCAGCA...CTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp GGAGAGGATGATGGCACCATCGCTGAAGTACACTCTGGAAATGATAACATTATTTCCAGCCACCCTGCCTaGCCCGGCCCTGGTCCCCCA +
Preference number: 4 (lower is better)
Translates to: GEDDGTIAEVHSGNDNIISSHPA*PGPGPP
Trigger: TGGGGGACCAGGGCCGGGCCAGGCAGGGTGGCTGGA...AATAATGTTATCATTTCCAGAGTGTACTTCAGCGATGGTGCCATCATCCTCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066041.12
CDS-3UTR CCA 90 bp CCTGTCACCGATCAGATGGCTGGGCAAGGGACAGTGGTAATCCAAGAAGAGTTAGGGAGCAGGATAGTGTaGAGTAGTGCAGGGAGGGGC +
Preference number: 4 (lower is better)
Translates to: PVTDQMAGQGTVVIQEELGSRIV*SSAGRG
Trigger: GCCCCTCCCTGCACTACTCCACACTATCCTGCTCCC...TAACTCTTCTTGGATTACCACTGTCCCTTGCCCAGCCATCTGATCGGTGACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp ATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGATCAGACATCCAGGCTaGCTGAGGAGAGCCATGAAG +
Preference number: 4 (lower is better)
Translates to: ISLVMEIWAGRRGPRKPQIRHPG*LRRAMK
Trigger: CTTCATGGCTCTCCTCAGCCAGCCTGGATGTCTGAT...CTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp GAAGTGATGCCATCCTTTGGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGGTCCTGCTTGATGCCTaGGAATATCCACGAGAGCTC +
Preference number: 4 (lower is better)
Translates to: EVMPSFGSPLSPRTLAALVLLDA*EYPREL
Trigger: GAGCTCTCGTGGATATTCTCAGGCATCAAGCAGGAC...CAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp AGGCCTTGGTGCTCAGTCAGGATGATGTCAACAAGTGTCAAGAAGTGTGAGACTAGCAGCAGGTGTTCCTaGGACACCAGGCGCGCTCGA +
Preference number: 4 (lower is better)
Translates to: RPWCSVRMMSTSVKKCETSSRCS*DTRRAR
Trigger: TCGAGCGCGCCTGGTGTCTCAGGAACACCTGCTGCT...AGTCTCACACTTCTTGACACTTGTTGACATCATCCTGACTGAGCACCAAGGCCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp TTAGTTGGGAGGCCGAAAACCTGGTGCTGGCATTTAGGAAGATTGGTGGTAACTAGGACTTCGTGGGGGTaGCAGCAGGTGCTCGCGACT +
Preference number: 4 (lower is better)
Translates to: LVGRPKTWCWHLGRLVVTRTSWG*QQVLAT
Trigger: AGTCGCGAGCACCTGCTGTCACCCCCACGAAGTCCT...AGTTACCACCAATCTTCCTAAATGCCAGCACCAGGTTTTCGGCCTCCCAACTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR GCA 90 bp GGAGAGGATGATGGCACCATCGCTGAAGTACACTCTGGAAATGATAACATTATTGTCAAGCGCCGCAGGTaGGCGAGTAGCGCGGGCAGC +
Preference number: 4 (lower is better)
Translates to: GEDDGTIAEVHSGNDNIIVKRRR*ASSAGS
Trigger: GCTGCCCGCGCTACTCGCGCACCTGCGGCGCTTGAC...AATAATGTTATCATTTCCAGAGTGTACTTCAGCGATGGTGCCATCATCCTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066041.12
CDS-3UTR GCA 90 bp CAGGTGGCCTTGGGCTACACATGCCCAACTTTCTCACGACATGGCACAGCGATAGCGGGTTGCAGGTCCTaGTTGATGCCTGAGAATATC +
Preference number: 4 (lower is better)
Translates to: QVALGYTCPTFSRHGTAIAGCRS*LMPENI
Trigger: GATATTCTCAGGCATCAAGCAGGACCTGCAACCCGC...TATCGCTGTGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp TCCTCTGGGATGACATCATGGGAGGGAGGCCTTGGTTCAAACAGTGACAAAGTAAGTGTGGCGGCGTGGTaGTTGGGGCTGTTGACGTTG +
Preference number: 4 (lower is better)
Translates to: SSGMTSWEGGLGSNSDKVSVAAW*LGLLTL
Trigger: CAACGTCAACAGCCCCAAGCACCACGCCGCCACACT...TACTTTGTCACTGTTTGAACCAAGGCCTCCCTCCCATGATGTCATCCCAGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR GCA 90 bp GACAAAGTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGGAGGCGTGGACGCCGTGGGTTGGGTaGTGGTGCCAGGCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: DKVKGEISSTVTSQKEAWTPWVG*WCQAQL
Trigger: GAGCTGGGCCTGGCACCAGCACCCAACCCACGGCGT...CCACGCCTCCTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp GGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGACACAGTCACTTCGTTCTTaGTGGCAGTGCGCAGGTGCT +
Preference number: 4 (lower is better)
Translates to: GFRGLRNLWCGTLILSLTQSLRS*WQCAGA
Trigger: AGCACCTGCGCACTGCCAGCAAGAACGAAGTGACTG...TGTCAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp AATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGCCGTGGTGGCCCAGCGTaGCGTGTCGTAGTTGGAGCA +
Preference number: 4 (lower is better)
Translates to: NGFVCSGGIMEWSYLLHGRGGPA*RVVVGA
Trigger: TGCTCCAACTACGACACGCCACGCTGGGCCACCACG...GCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GACAAAGTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGGAGGCGTGGTCTCCCGGTGCGCCCTaGGTGCACGTGACGCCTTGC +
Preference number: 4 (lower is better)
Translates to: DKVKGEISSTVTSQKEAWSPGAP*VHVTPC
Trigger: GCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGA...CCACGCCTCCTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GAGGTGATGACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTGTTCTTGGGTGTCCTTaGGGCCATGCTGTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: EVMTTVIMVDPKPWRHWGVLGCP*GHAVWA
Trigger: GGCCCAGACAGCATGGCCCCAAGGACACCCAAGAAC...ACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTCATCACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp AAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGTGAGGCAGCCAGGCTaGCCCGGGTGGTGGGATCTG +
Preference number: 4 (lower is better)
Translates to: KMALSVVVASWNGAIFSMVRQPG*PGWWDL
Trigger: CAGATCCCACCACCCGGGCCAGCCTGGCTGCCTCAC...CATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GAAGTGATGCCATCCTTTGGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGATCAGACATCCAGGCTaGCTGAGGAGAGCCATGAAG +
Preference number: 4 (lower is better)
Translates to: EVMPSFGSPLSPRTLAALIRHPG*LRRAMK
Trigger: CTTCATGGCTCTCCTCAGCCAGCCTGGATGTCTGAT...CAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CAA 72 bp CCCTGGTATATTAGGGAAAGAGGCAAAGGAGCACCCTaGGCCTTTTCAGGTGAAGGTAGCAGGGGCCATTGC +
Preference number: 4 (lower is better)
Translates to: PWYIRERGKGAP*AFSGEGSRGHC
Trigger: GCAATGGCCCCTGCTACCTTCACCTGAAAAGGCCAAGGGTGCTCCTTTGCCTCTTTCCCTAATATACCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR TCA 90 bp TCCTCTGGGATGACATCATGGGAGGGAGGCCTTGGTTCAAACAGTGACAAAGTACGTCGTACTGGCCCATaGCATCGTAGTAGCCATGGC +
Preference number: 4 (lower is better)
Translates to: SSGMTSWEGGLGSNSDKVRRTGP*HRSSHG
Trigger: GCCATGGCTACTACGATGTCATGGGCCAGTACGACG...TACTTTGTCACTGTTTGAACCAAGGCCTCCCTCCCATGATGTCATCCCAGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp GACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCATGGTCTCAGCCAGTCTCTTaGGGGAAGAGTATCGATTCA +
Preference number: 4 (lower is better)
Translates to: DFSSPVDQSGCGAEAHPWSQPVS*GKSIDS
Trigger: TGAATCGATACTCTTCCCTCAAGAGACTGGCTGAGA...CCATGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp GAAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATCTGGGGTCAGAGAACTaGTTCTGGCCCGGTCCGGGC +
Preference number: 4 (lower is better)
Translates to: ENGFVCSGGIMEWSYLLHLGSEN*FWPGPG
Trigger: GCCCGGACCGGGCCAGAAGCAGTTCTCTGACCCCAG...ATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp AGGCCTTGGTGCTCAGTCAGGATGATGTCAACAAGTGTCAAGAAGTGTGAGACTAGTGTGGCGGCGTGGTaGTTGGGGCTGTTGACGTTG +
Preference number: 4 (lower is better)
Translates to: RPWCSVRMMSTSVKKCETSVAAW*LGLLTL
Trigger: CAACGTCAACAGCCCCAAGCACCACGCCGCCACACT...AGTCTCACACTTCTTGACACTTGTTGACATCATCCTGACTGAGCACCAAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp AGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGGCACAGTGCGCCAGGCGCATGTaGCGGTGCTCGCAGCAGAAA +
Preference number: 4 (lower is better)
Translates to: SPKNRWSFLVMTSHEEAQCARRM*RCSQQK
Trigger: TTTCTGCTGCGAGCACCGCCACATGCGCCTGGCGCA...CTGTGCCTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp CTCATAGGAAGGAGGTTTAGTCCCTGCAAACAACATCATAAAACACAGACATATGGCTGTGCTGCCCCCTaGGCCCTCTCCCCCACGTCC +
Preference number: 4 (lower is better)
Translates to: LIGRRFSPCKQHHKTQTYGCAAP*ALSPTS
Trigger: GGACGTGGGGGAGAGGGCCCAGGGGGCAGCACAGCC...ATATGTCTGTGTTTTATGATGTTGTTTGCAGGGACTAAACCTCCTTCCTATGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGACAATCAGACATCCAGGCTaGCTGAGGAGAGCCATGAAG +
Preference number: 4 (lower is better)
Translates to: GFRGLRNLWCGTLILSLTIRHPG*LRRAMK
Trigger: CTTCATGGCTCTCCTCAGCCAGCCTGGATGTCTGAT...TGTCAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
3UTR CAA 72 bp GGGAGGCCGAAAACCTGGTGCTGGCATTTAGGAAGATaGGTGGTAACTCCCTACTTTCCTCAGCATGGTGAG +
Preference number: 4 (lower is better)
Translates to: GRPKTWCWHLGR*VVTPYFPQHGE
Trigger: CTCACCATGCTGAGGAAAGTAGGGAGTTACCACCAATCTTCCTAAATGCCAGCACCAGGTTTTCGGCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR TCA 90 bp AATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGCCGTCGTACTGGCCCATaGCATCGTAGTAGCCATGGC +
Preference number: 4 (lower is better)
Translates to: NGFVCSGGIMEWSYLLHGRRTGP*HRSSHG
Trigger: GCCATGGCTACTACGATGTCATGGGCCAGTACGACG...GCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp AGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGGCACAGCACGTGACGCCTTGCTaGAGGCCACTTTGGCACCGA +
Preference number: 4 (lower is better)
Translates to: SPKNRWSFLVMTSHEEAQHVTPC*RPLWHR
Trigger: TCGGTGCCAAAGTGGCCTTCAGCAAGGCGTCACGTG...CTGTGCCTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp GTAACATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGGTATCGATTCAGTTCTaGTTTCACAGCAGCCTCATA +
Preference number: 4 (lower is better)
Translates to: VTSQKEAWSPVQGPIWSQVSIQF*FHSSLI
Trigger: TATGAGGCTGCTGTGAAATCAGAACTGAATCGATAC...CTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATGTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp CTCATAGGAAGGAGGTTTAGTCCCTGCAAACAACATCATAAAACACAGACATATCCACGTAGGCTGTGCTaGCCCCTGGGCCCTCTCCCC +
Preference number: 4 (lower is better)
Translates to: LIGRRFSPCKQHHKTQTYPRRLC*PLGPLP
Trigger: GGGGAGAGGGCCCAGGGGGCAGCACAGCCTACGTGG...ATATGTCTGTGTTTTATGATGTTGTTTGCAGGGACTAAACCTCCTTCCTATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp TCCTCTGGGATGACATCATGGGAGGGAGGCCTTGGTTCAAACAGTGACAAAGTACCATCACCCAGAAGGTaGTCCTGGGACATAACACGC +
Preference number: 4 (lower is better)
Translates to: SSGMTSWEGGLGSNSDKVPSPRR*SWDITR
Trigger: GCGTGTTATGTCCCAGGAGCACCTTCTGGGTGATGG...TACTTTGTCACTGTTTGAACCAAGGCCTCCCTCCCATGATGTCATCCCAGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp GAGGTGATGACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTCAGTCACTTCGTTCTTaGTGGCAGTGCGCAGGTGCT +
Preference number: 4 (lower is better)
Translates to: EVMTTVIMVDPKPWRHWGQSLRS*WQCAGA
Trigger: AGCACCTGCGCACTGCCAGCAAGAACGAAGTGACTG...ACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTCATCACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp TGGAGAAGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGTCAGAGAACTGCTTCTaGCCCGGTCCGGGCGGGTTG +
Preference number: 4 (lower is better)
Translates to: WRSPKNRWSFLVMTSHEESENCF*PGPGGL
Trigger: CAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCTGA...CTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACTTCTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp AAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGTGGGCCTCCCAGCCCTaGGGTCAGAGAACTGCTTCT +
Preference number: 4 (lower is better)
Translates to: KMALSVVVASWNGAIFSMWASQP*GQRTAS
Trigger: AGAAGCAGTTCTCTGACCCCAGGGCTGGGAGGCCCA...CATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GAAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGTTCTTGGGTGTCCTTaGGGCCATGCTGTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: ENGFVCSGGIMEWSYLLHVLGCP*GHAVWA
Trigger: GGCCCAGACAGCATGGCCCCAAGGACACCCAAGAAC...ATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp CTTGGTGTGTATGATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCGGTTGGAGGGCTTCATaGTGTTGTAAAGGTTCTTGG +
Preference number: 4 (lower is better)
Translates to: LGVYDKPCNGDLGWEKGAGWRAS*CCKGSW
Trigger: CCAAGAACCTTTACAACACCATGAAGCCCTCCAACC...GGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTATCATACACACCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GTGGGCAAACAAAAGCTGAAAGCCCCTGAACCTCTCCAGGGCTTGGAGAAAGCTGGTTGGAGGGCTTCATaGTGTTGTAAAGGTTCTTGG +
Preference number: 4 (lower is better)
Translates to: VGKQKLKAPEPLQGLEKAGWRAS*CCKGSW
Trigger: CCAAGAACCTTTACAACACCATGAAGCCCTCCAACC...AGCTTTCTCCAAGCCCTGGAGAGGTTCAGGGGCTTTCAGCTTTTGTTTGCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp GAAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGGAGCAGGATAGTGTaGAGTAGTGCAGGGAGGGGC +
Preference number: 4 (lower is better)
Translates to: ENGFVCSGGIMEWSYLLHGSRIV*SSAGRG
Trigger: GCCCCTCCCTGCACTACTCCACACTATCCTGCTCCC...ATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp AGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGGCACAGTCACTTCGTTCTTGCTaGCAGTGCGCAGGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: SPKNRWSFLVMTSHEEAQSLRSC*QCAGAG
Trigger: CCCAGCACCTGCGCACTGCCAGCAAGAACGAAGTGA...CTGTGCCTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp TTAGTTGGGAGGCCGAAAACCTGGTGCTGGCATTTAGGAAGATTGGTGGTAACTGTCCTGCTTGATGCCTaGGAATATCCACGAGAGCTC +
Preference number: 4 (lower is better)
Translates to: LVGRPKTWCWHLGRLVVTVLLDA*EYPREL
Trigger: GAGCTCTCGTGGATATTCTCAGGCATCAAGCAGGAC...AGTTACCACCAATCTTCCTAAATGCCAGCACCAGGTTTTCGGCCTCCCAACTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR TCA 90 bp CAAGTTCTGATCCTGGTTGGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGTCTCAGCCAGTCTCTTaGGGGAAGAGTATCGATTCA +
Preference number: 4 (lower is better)
Translates to: QVLILVGTKYQKWSGLGQSQPVS*GKSIDS
Trigger: TGAATCGATACTCTTCCCTCAAGAGACTGGCTGAGA...CTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp TCAAACAGTGACAAAGTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGTGCTCCAGGGTGCCCTaGCGCTGGAAGGGTGGCCTG +
Preference number: 4 (lower is better)
Translates to: SNSDKVKGEISSTVTSQKCSRVP*RWKGGL
Trigger: CAGGCCACCCTTCCAGCGCCAGGGCACCCTGGAGCA...CTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTCACTGTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp AGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGGCACAGGTTGCAGGTCCTGCTTaGTGCCTGAGAATATCCACG +
Preference number: 4 (lower is better)
Translates to: SPKNRWSFLVMTSHEEAQVAGPA*CLRIST
Trigger: CGTGGATATTCTCAGGCATCAAGCAGGACCTGCAAC...CTGTGCCTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp CTCATAGGAAGGAGGTTTAGTCCCTGCAAACAACATCATAAAACACAGACATATTCAGAGAACTGCTTCTaGCCCGGTCCGGGCGGGTTG +
Preference number: 4 (lower is better)
Translates to: LIGRRFSPCKQHHKTQTYSENCF*PGPGGL
Trigger: CAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCTGA...ATATGTCTGTGTTTTATGATGTTGTTTGCAGGGACTAAACCTCCTTCCTATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp GAAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATCACGCCAGTCGAGGTTaGAGGGCTTCATGGTGTTGT +
Preference number: 4 (lower is better)
Translates to: ENGFVCSGGIMEWSYLLHHASRG*RASWCC
Trigger: ACAACACCATGAAGCCCTCCAACCTCGACTGGCGTG...ATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119433.4
3UTR CAA 72 bp CCCAGAGGACAACTGAAATATAGCCTGTCACAACATTaGGACCCTAAGATGATGGGTCCTGGTAGATGGCAC +
Preference number: 4 (lower is better)
Translates to: PRGQLKYSLSQH*DPKMMGPGRWH
Trigger: GTGCCATCTACCAGGACCCATCATCTTAGGGTCCAAATGTTGTGACAGGCTATATTTCAGTTGTCCTCTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CCA 90 bp TCAAACAGTGACAAAGTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGAGGTGCTCGCGACTCTaGCGAAGCGCCTCAGGTGAG +
Preference number: 4 (lower is better)
Translates to: SNSDKVKGEISSTVTSQKRCSRL*RSASGE
Trigger: CTCACCTGAGGCGCTTCGCCAGAGTCGCGAGCACCT...CTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTCACTGTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CAA 72 bp CCCTGGGAAATGATGACACCATGGTTGGGAGGGATCTaGGGAGGCAATGATGATGCCATTAATGGTGATAAT +
Preference number: 4 (lower is better)
Translates to: PWEMMTPWLGGI*GGNDDAINGDN
Trigger: ATTATCACCATTAATGGCATCATCATTGCCTCCCAAGATCCCTCCCAACCATGGTGTCATCATTTCCCAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR TCA 90 bp GACAAAGTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGGAGGCGTGGTCTCAGCCAGTCTCTTaGGGGAAGAGTATCGATTCA +
Preference number: 4 (lower is better)
Translates to: DKVKGEISSTVTSQKEAWSQPVS*GKSIDS
Trigger: TGAATCGATACTCTTCCCTCAAGAGACTGGCTGAGA...CCACGCCTCCTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CAA 72 bp TGCTATGCCATCATGAAAGGAGGACACTGGGTGGCATaGATGATGTCATTGGCAAGGTCAACAGCACATATA +
Preference number: 4 (lower is better)
Translates to: CYAIMKGGHWVA*MMSLARSTAHI
Trigger: TATATGTGCTGTTGACCTTGCCAATGACATCATCAATGCCACCCAGTGTCCTCCTTTCATGATGGCATAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CAA 72 bp CCATCGCTGAAGTACACTCTGGAAATGATAACATTATaGTTGCCATGGGTCCAGGGAGGTGATGACAACTGT +
Preference number: 4 (lower is better)
Translates to: PSLKYTLEMITL*LPWVQGGDDNC
Trigger: ACAGTTGTCATCACCTCCCTGGACCCATGGCAACAATAATGTTATCATTTCCAGAGTGTACTTCAGCGATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR GCA 90 bp TCAAACAGTGACAAAGTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGCCATCACCCAGAAGGTaGTCCTGGGACATAACACGC +
Preference number: 4 (lower is better)
Translates to: SNSDKVKGEISSTVTSQKPSPRR*SWDITR
Trigger: GCGTGTTATGTCCCAGGAGCACCTTCTGGGTGATGG...CTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTCACTGTTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
3UTR CAA 72 bp AGACTTGTCTCTGTAGTGACACGCAGGAAGAAATTTTaGTTTGTAGGGATGATGGGATGGGACAAGGCATTG +
Preference number: 4 (lower is better)
Translates to: RLVSVVTRRKKF*FVGMMGWDKAL
Trigger: CAATGCCTTGTCCCATCCCATCATCCCTACAAACAAAAATTTCTTCCTGCGTGTCACTACAGAGACAAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp TCAAACAGTGACAAAGTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGGTTGCAGGTCCTGCTTaGTGCCTGAGAATATCCACG +
Preference number: 4 (lower is better)
Translates to: SNSDKVKGEISSTVTSQKVAGPA*CLRIST
Trigger: CGTGGATATTCTCAGGCATCAAGCAGGACCTGCAAC...CTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTCACTGTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp AAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGTATCGATTCAGTTCTaGTTTCACAGCAGCCTCATA +
Preference number: 4 (lower is better)
Translates to: KMALSVVVASWNGAIFSMVSIQF*FHSSLI
Trigger: TATGAGGCTGCTGTGAAATCAGAACTGAATCGATAC...CATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR TCA 90 bp TGGAGAAGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGGTATCGATTCAGTTCTaGTTTCACAGCAGCCTCATA +
Preference number: 4 (lower is better)
Translates to: WRSPKNRWSFLVMTSHEEVSIQF*FHSSLI
Trigger: TATGAGGCTGCTGTGAAATCAGAACTGAATCGATAC...CTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACTTCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR GCA 90 bp TCAAACAGTGACAAAGTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGGCGGGTTGCAGGTCCTaGTTGATGCCTGAGAATATC +
Preference number: 4 (lower is better)
Translates to: SNSDKVKGEISSTVTSQKAGCRS*LMPENI
Trigger: GATATTCTCAGGCATCAAGCAGGACCTGCAACCCGC...CTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTCACTGTTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CCA 90 bp TCAAACAGTGACAAAGTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGGGTTGGAGGGCTTCATaGTGTTGTAAAGGTTCTTGG +
Preference number: 4 (lower is better)
Translates to: SNSDKVKGEISSTVTSQKGWRAS*CCKGSW
Trigger: CCAAGAACCTTTACAACACCATGAAGCCCTCCAACC...CTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTCACTGTTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CCA 90 bp GTGCCGCTGCGCCCGTGCCACTCGCGGGGCTGGTCTTGGTGGCGTTaGCGCTGGTACCTGCCGCGCTCCCGCCGCCCGCCAGAGCCCCGG +
Preference number: 5 (lower is better)
Translates to: VPLRPCHSRGWSWWR*RWYLPRSRRPPEPR
Trigger: CCGGGGCTCTGGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCGCAGCGGCAC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS CCA 90 bp GCGCCCGTGCCGCTGCGCCCGTGCCACTCGCGGGGCTGGTCTTGGTaGCGTTGGCGCTGGTACCTGCCGCGCTCCCGCCGCCCGCCAGAG +
Preference number: 5 (lower is better)
Translates to: APVPLRPCHSRGWSW*RWRWYLPRSRRPPE
Trigger: CTCTGGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCGCAGCGGCACGGGCGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS CCA 90 bp GAGGCGCCCGTGCCGCTGCGCCCGTGCCACTCGCGGGGCTGGTCTTaGTGGCGTTGGCGCTGGTACCTGCCGCGCTCCCGCCGCCCGCCA +
Preference number: 5 (lower is better)
Translates to: EAPVPLRPCHSRGWS*WRWRWYLPRSRRPP
Trigger: TGGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCGCAGCGGCACGGGCGCCTC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS GCA 90 bp CGTGCCACTCGCGGGGCTGGTCTTGGTGGCGTTGGCGCTGGTACCTaGCGCGCTCCCGCCGCCCGCCAGAGCCCCGGTCAAGCGCCGCAG +
Preference number: 5 (lower is better)
Translates to: RATRGAGLGGVGAGT*RAPAARQSPGQAPQ
Trigger: CTGCGGCGCTTGACCGGGGCTCTGGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS CCA 90 bp CTGCGCCCGTGCCACTCGCGGGGCTGGTCTTGGTGGCGTTGGCGCTaGTACCTGCCGCGCTCCCGCCGCCCGCCAGAGCCCCGGTCAAGC +
Preference number: 5 (lower is better)
Translates to: LRPCHSRGWSWWRWR*YLPRSRRPPEPRSS
Trigger: GCTTGACCGGGGCTCTGGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCGCAG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS GCA 90 bp CATGGCAGAGCTCGGCCGGAGGAGGCGCCCGTGCCGCTGCGCCCGTaGCACTCGCGGGGCTGGTCTTGGTGGCGTTGGCGCTGGTACCTG +
Preference number: 5 (lower is better)
Translates to: HGRARPEEAPVPLRP*HSRGWSWWRWRWYL
Trigger: CAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCGCAGCGGCACGGGCGCCTCCTCCGGCCGAGCTCTGCCATG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS CCA 90 bp CAGCCAGCGGCGGGGGCGTGGTGGCCCAGCGTGGCGTGTCGTAGTTaGAGCAGGAGGCCTGCGCCAGGCGCATGTGGCGGTGCTCGCAGC +
Preference number: 5 (lower is better)
Translates to: QPAAGAWWPSVACRS*SRRPAPGACGGARS
Trigger: GCTGCGAGCACCGCCACATGCGCCTGGCGCAGGCCTCCTGCTCCAACTACGACACGCCACGCTGGGCCACCACGCCCCCGCCGCTGGCTG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS GCA 90 bp GTAGTAGCCATGGCAGAGCTCGGCCGGAGGAGGCGCCCGTGCCGCTaGGCCCGTGCCACTCGCGGGGCTGGTCTTGGTGGCGTTGGCGCT +
Preference number: 5 (lower is better)
Translates to: VVAMAELGRRRRPCR*ARATRGAGLGGVGA
Trigger: AGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCGCAGCGGCACGGGCGCCTCCTCCGGCCGAGCTCTGCCATGGCTACTAC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS GCA 90 bp GCTCCAGGGTGCCCTGGCGCTGGAAGGGTGGCCTGCGGGCCAGTGTaGCCCCACCCCCGCCCGCATCAGACATCCAGGCTGGCTGAGGAG +
Preference number: 5 (lower is better)
Translates to: APGCPGAGRVACGPV*PHPRPHQTSRLAEE
Trigger: CTCCTCAGCCAGCCTGGATGTCTGATGCGGGCGGGGGTGGGGGCACACTGGCCCGCAGGCCACCCTTCCAGCGCCAGGGCACCCTGGAGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS TCA 90 bp GAGAGCTCTGGGCACGTTGATCTCCCGGTGCGCCCTGGGTGCACGTaGCGCCTTGCTGAAGGCCACTTTGGCACCGACGCCCACCGCCAG +
Preference number: 5 (lower is better)
Translates to: ESSGHVDLPVRPGCT*RLAEGHFGTDAHRQ
Trigger: CTGGCGGTGGGCGTCGGTGCCAAAGTGGCCTTCAGCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGATCAACGTGCCCAGAGCTCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 90 bp TTGGGGCCATGCTGTCTGGGCCTCCCAGCCCTGGGGTCAGAGAACTaGTTCTGGCCCGGTCCGGGCGGGTTGCAGGTCCTGCTTGATGCC +
Preference number: 5 (lower is better)
Translates to: LGPCCLGLPALGSEN*FWPGPGGLQVLLDA
Trigger: GGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCTGACCCCAGGGCTGGGAGGCCCAGACAGCATGGCCCCAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 90 bp CCAGCCATCCATACGGTAGCCACCTCCAGTGCCAGGCCGCCGGAGTaGATGCAAGGGCAGCGTTCCGCGCGGCATCTCCAGTTGTCTGCG +
Preference number: 5 (lower is better)
Translates to: PAIHTVATSSARPPE*MQGQRSARHLQLSA
Trigger: CGCAGACAACTGGAGATGCCGCGCGGAACGCTGCCCTTGCATGCACTCCGGCGGCCTGGCACTGGAGGTGGCTACCGTATGGATGGCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CCA 90 bp ACCCAGAAGGTGCTCCTGGGACATAACACGCCGTGGGTTGGGTGCTaGTGCCAGGCCCAGCTCCTCAGGGCCACCCCAGCCATCCATACG +
Preference number: 5 (lower is better)
Translates to: TQKVLLGHNTPWVGC*CQAQLLRATPAIHT
Trigger: CGTATGGATGGCTGGGGTGGCCCTGAGGAGCTGGGCCTGGCACCAGCACCCAACCCACGGCGTGTTATGTCCCAGGAGCACCTTCTGGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CCA 90 bp TCGGCTACCATCACCCAGAAGGTGCTCCTGGGACATAACACGCCGTaGGTTGGGTGCTGGTGCCAGGCCCAGCTCCTCAGGGCCACCCCA +
Preference number: 5 (lower is better)
Translates to: SATITQKVLLGHNTP*VGCWCQAQLLRATP
Trigger: TGGGGTGGCCCTGAGGAGCTGGGCCTGGCACCAGCACCCAACCCACGGCGTGTTATGTCCCAGGAGCACCTTCTGGGTGATGGTAGCCGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 90 bp ATCACCCAGAAGGTGCTCCTGGGACATAACACGCCGTGGGTTGGGTaGTGGTGCCAGGCCCAGCTCCTCAGGGCCACCCCAGCCATCCAT +
Preference number: 5 (lower is better)
Translates to: ITQKVLLGHNTPWVG*WCQAQLLRATPAIH
Trigger: ATGGATGGCTGGGGTGGCCCTGAGGAGCTGGGCCTGGCACCAGCACCCAACCCACGGCGTGTTATGTCCCAGGAGCACCTTCTGGGTGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 90 bp CAGCCCTGGGGTCAGAGAACTGCTTCTGGCCCGGTCCGGGCGGGTTaGAGGTCCTGCTTGATGCCTGAGAATATCCACGAGAGCTCTGGG +
Preference number: 5 (lower is better)
Translates to: QPWGQRTASGPVRAG*RSCLMPENIHESSG
Trigger: CCCAGAGCTCTCGTGGATATTCTCAGGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCTGACCCCAGGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp TGGTGGTCACACCACAGAAGGGCCTCACTCTGGAGAAGTCCCAAGAACAGGTGGCCCGGTCCGGGCGGGTaGCAGGTCCTGCTTGATGCC +
Preference number: 5 (lower is better)
Translates to: WWSHHRRASLWRSPKNRWPGPGG*QVLLDA
Trigger: GGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGG...CCACCTGTTCTTGGGACTTCTCCAGAGTGAGGCCCTTCTGTGGTGTGACCACCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp CCCCAGGGCTCACTGCACAGGCCCAGTCTGCCTTTACTGGGGCTAGTAGACATCGAGCCGGTGCTGCAGTaGAAGGTGGCGTCGTACTGG +
Preference number: 5 (lower is better)
Translates to: PQGSLHRPSLPLLGLVDIEPVLQ*KVASYW
Trigger: CCAGTACGACGCCACCTTCAACTGCAGCACCGGCTC...GATGTCTACTAGCCCCAGTAAAGGCAGACTGGGCCTGTGCAGTGAGCCCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp GTAACATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGTTGCTGAAGGCCACTTaGGCACCGACGCCCACCGCC +
Preference number: 5 (lower is better)
Translates to: VTSQKEAWSPVQGPIWSQLLKAT*APTPTA
Trigger: GGCGGTGGGCGTCGGTGCCAAAGTGGCCTTCAGCAA...CTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATGTTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 90 bp TGCCTGAGAATATCCACGAGAGCTCTGGGCACGTTGATCTCCCGGTaGGCCCTGGGTGCACGTGACGCCTTGCTGAAGGCCACTTTGGCA +
Preference number: 5 (lower is better)
Translates to: CLRISTRALGTLISR*ALGARDALLKATLA
Trigger: TGCCAAAGTGGCCTTCAGCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGATCAACGTGCCCAGAGCTCTCGTGGATATTCTCAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CCA 90 bp CATGGTGTTGTAAAGGTTCTTGGGTGTCCTTGGGGCCATGCTGTCTaGGCCTCCCAGCCCTGGGGTCAGAGAACTGCTTCTGGCCCGGTC +
Preference number: 5 (lower is better)
Translates to: HGVVKVLGCPWGHAV*ASQPWGQRTASGPV
Trigger: GACCGGGCCAGAAGCAGTTCTCTGACCCCAGGGCTGGGAGGCCCAGACAGCATGGCCCCAAGGACACCCAAGAACCTTTACAACACCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp ATAAGCCTTGTAATGGAGATCTGGGCTGGGAGAAGGGGGCCTCGGAAGCCACAGAGAGCTCTGGGCACGTaGATCTCCCGGTGCGCCCTG +
Preference number: 5 (lower is better)
Translates to: ISLVMEIWAGRRGPRKPQRALGT*ISRCAL
Trigger: CAGGGCGCACCGGGAGATCAACGTGCCCAGAGCTCT...CTGTGGCTTCCGAGGCCCCCTTCTCCCAGCCCAGATCTCCATTACAAGGCTTAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp ATGGGGTTCAGAGGCCTGAGGAACCTCTGGTGTGGCACTTTGATCTTGTCTCTGCCCGGTCCGGGCGGGTaGCAGGTCCTGCTTGATGCC +
Preference number: 5 (lower is better)
Translates to: MGFRGLRNLWCGTLILSLPGPGG*QVLLDA
Trigger: GGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGG...CAGAGACAAGATCAAAGTGCCACACCAGAGGTTCCTCAGGCCTCTGAACCCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CAA 90 bp CAGGACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCAGGCCCTAGCAGCAGGTaGGAGTGTGAGGCAGCCAGG +
Preference number: 5 (lower is better)
Translates to: QDFSSPVDQSGCGAEAHPGPSSR*ECEAAR
Trigger: CCTGGCTGCCTCACACTCCAACCTGCTGCTAGGGCC...TGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS TCA 90 bp AGAGAACTGCTTCTGGCCCGGTCCGGGCGGGTTGCAGGTCCTGCTTaGTGCCTGAGAATATCCACGAGAGCTCTGGGCACGTTGATCTCC +
Preference number: 5 (lower is better)
Translates to: RELLLARSGRVAGPA*CLRISTRALGTLIS
Trigger: GGAGATCAACGTGCCCAGAGCTCTCGTGGATATTCTCAGGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS TCA 90 bp ACAGCAGCAGGTGTTCCTGAGACACCAGGCGCGCTCGAGGCAACGTaGACTCATAGCGGGAAGCTCGGCTACCATCACCCAGAAGGTGCT +
Preference number: 5 (lower is better)
Translates to: TAAGVPETPGALEAT*THSGKLGYHHPEGA
Trigger: AGCACCTTCTGGGTGATGGTAGCCGAGCTTCCCGCTATGAGTTCACGTTGCCTCGAGCGCGCCTGGTGTCTCAGGAACACCTGCTGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 90 bp GGTCAGAGAACTGCTTCTGGCCCGGTCCGGGCGGGTTGCAGGTCCTaGTTGATGCCTGAGAATATCCACGAGAGCTCTGGGCACGTTGAT +
Preference number: 5 (lower is better)
Translates to: GQRTASGPVRAGCRS*LMPENIHESSGHVD
Trigger: ATCAACGTGCCCAGAGCTCTCGTGGATATTCTCAGGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCTGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp GAAGTGATGCCATCCTTTGGCTCACCCTTGAGTCCCAGGACTTTAGCAGCCCTGAGAGCTCTGGGCACGTaGATCTCCCGGTGCGCCCTG +
Preference number: 5 (lower is better)
Translates to: EVMPSFGSPLSPRTLAALRALGT*ISRCAL
Trigger: CAGGGCGCACCGGGAGATCAACGTGCCCAGAGCTCT...CAGGGCTGCTAAAGTCCTGGGACTCAAGGGTGAGCCAAAGGATGGCATCACTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CCA 90 bp GAGGTTGGAGGGCTTCATGGTGTTGTAAAGGTTCTTGGGTGTCCTTaGGGCCATGCTGTCTGGGCCTCCCAGCCCTGGGGTCAGAGAACT +
Preference number: 5 (lower is better)
Translates to: EVGGLHGVVKVLGCP*GHAVWASQPWGQRT
Trigger: AGTTCTCTGACCCCAGGGCTGGGAGGCCCAGACAGCATGGCCCCAAGGACACCCAAGAACCTTTACAACACCATGAAGCCCTCCAACCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 90 bp GGAGTGCATGCAAGGGCAGCGTTCCGCGCGGCATCTCCAGTTGTCTaGGCTTCAGGTAGGCTTCATCCAGATCTTTCTCAGCCAGTCTCT +
Preference number: 5 (lower is better)
Translates to: GVHARAAFRAASPVV*ASGRLHPDLSQPVS
Trigger: AGAGACTGGCTGAGAAAGATCTGGATGAAGCCTACCTGAAGCGCAGACAACTGGAGATGCCGCGCGGAACGCTGCCCTTGCATGCACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp CAAGTTCTGATCCTGGTTGGGACCAAGTACCAGAAATGGAGTGGGTTAGGGCAGTTGCTGAAGGCCACTTaGGCACCGACGCCCACCGCC +
Preference number: 5 (lower is better)
Translates to: QVLILVGTKYQKWSGLGQLLKAT*APTPTA
Trigger: GGCGGTGGGCGTCGGTGCCAAAGTGGCCTTCAGCAA...CTGCCCTAACCCACTCCATTTCTGGTACTTGGTCCCAACCAGGATCAGAACTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CAA 90 bp AGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGGCACAGCCCGGTCCGGGCGGGTaGCAGGTCCTGCTTGATGCC +
Preference number: 5 (lower is better)
Translates to: SPKNRWSFLVMTSHEEAQPGPGG*QVLLDA
Trigger: GGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGG...CTGTGCCTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp CATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGAGCCTTCTCAGCCAGTCTCTaGAGGGAAGAGTATCGATTC +
Preference number: 5 (lower is better)
Translates to: HPKRRRGLRSKGPSGLRAFSASL*REEYRF
Trigger: GAATCGATACTCTTCCCTCAAGAGACTGGCTGAGAA...GGCTCTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp GAAAGGAGGACACTGGGTGGCATTGATGATGTCATTGGCAAGGTCAACAGCACAGGCCCTAGCAGCAGGTaGGAGTGTGAGGCAGCCAGG +
Preference number: 5 (lower is better)
Translates to: ERRTLGGIDDVIGKVNSTGPSSR*ECEAAR
Trigger: CCTGGCTGCCTCACACTCCAACCTGCTGCTAGGGCC...TGTGCTGTTGACCTTGCCAATGACATCATCAATGCCACCCAGTGTCCTCCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp CAGGTGGCCTTGGGCTACACATGCCCAACTTTCTCACGACATGGCACAGCGATAACAGTCACTTCGTTCTaGCTGGCAGTGCGCAGGTGC +
Preference number: 5 (lower is better)
Translates to: QVALGYTCPTFSRHGTAITVTSF*LAVRRC
Trigger: GCACCTGCGCACTGCCAGCAAGAACGAAGTGACTGT...TATCGCTGTGCCATGTCGTGAGAAAGTTGGGCATGTGTAGCCCAAGGCCACCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp AATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGCAGAGCTCTGGGCACGTaGATCTCCCGGTGCGCCCTG +
Preference number: 5 (lower is better)
Translates to: NGFVCSGGIMEWSYLLHGRALGT*ISRCAL
Trigger: CAGGGCGCACCGGGAGATCAACGTGCCCAGAGCTCT...GCCATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp CAGGACTTTAGCAGCCCTGTGGATCAGAGCGGCTGTGGAGCTGAAGCTCATCCAGGTTGCAGGTCCTGCTaGATGCCTGAGAATATCCAC +
Preference number: 5 (lower is better)
Translates to: QDFSSPVDQSGCGAEAHPGCRSC*MPENIH
Trigger: GTGGATATTCTCAGGCATCAAGCAGGACCTGCAACC...TGGATGAGCTTCAGCTCCACAGCCGCTCTGATCCACAGGGCTGCTAAAGTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp GAGGTGATGACAACTGTGATTATGGTAGACCCTAAGCCATGGAGACACTGGGGTGGTTCTTGGGTGTCCTaGGGGCCATGCTGTCTGGGC +
Preference number: 5 (lower is better)
Translates to: EVMTTVIMVDPKPWRHWGGSWVS*GPCCLG
Trigger: GCCCAGACAGCATGGCCCCAAGGACACCCAAGAACC...ACCCCAGTGTCTCCATGGCTTAGGGTCTACCATAATCACAGTTGTCATCACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CAA 90 bp GAAAGGAGGACACTGGGTGGCATTGATGATGTCATTGGCAAGGTCAACAGCACAGGTTCTTGGGTGTCCTaGGGGCCATGCTGTCTGGGC +
Preference number: 5 (lower is better)
Translates to: ERRTLGGIDDVIGKVNSTGSWVS*GPCCLG
Trigger: GCCCAGACAGCATGGCCCCAAGGACACCCAAGAACC...TGTGCTGTTGACCTTGCCAATGACATCATCAATGCCACCCAGTGTCCTCCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp GTAACATCCCAAAAGGAGGCGTGGTCTCCGGTCCAAGGGCCCATCTGGTCTCAGTTCTCAGCCAGTCTCTaGAGGGAAGAGTATCGATTC +
Preference number: 5 (lower is better)
Translates to: VTSQKEAWSPVQGPIWSQFSASL*REEYRF
Trigger: GAATCGATACTCTTCCCTCAAGAGACTGGCTGAGAA...CTGAGACCAGATGGGCCCTTGGACCGGAGACCACGCCTCCTTTTGGGATGTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp TGGAGAAGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGTTGCTGAAGGCCACTTaGGCACCGACGCCCACCGCC +
Preference number: 5 (lower is better)
Translates to: WRSPKNRWSFLVMTSHEELLKAT*APTPTA
Trigger: GGCGGTGGGCGTCGGTGCCAAAGTGGCCTTCAGCAA...CTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACTTCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp AGGCCTTGGTGCTCAGTCAGGATGATGTCAACAAGTGTCAAGAAGTGTGAGACTGGTGCACGTGACGCCTaGCTGAAGGCCACTTTGGCA +
Preference number: 5 (lower is better)
Translates to: RPWCSVRMMSTSVKKCETGARDA*LKATLA
Trigger: TGCCAAAGTGGCCTTCAGCAAGGCGTCACGTGCACC...AGTCTCACACTTCTTGACACTTGTTGACATCATCCTGACTGAGCACCAAGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp ACATTATCAGAGGAGGCAGCTGGCTCCACCCTAGTCCATTGGAGGGAATGGGAAGGTTGCAGGTCCTGCTaGATGCCTGAGAATATCCAC +
Preference number: 5 (lower is better)
Translates to: TLSEEAAGSTLVHWREWEGCRSC*MPENIH
Trigger: GTGGATATTCTCAGGCATCAAGCAGGACCTGCAACC...TTCCCATTCCCTCCAATGGACTAGGGTGGAGCCAGCTGCCTCCTCTGATAATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS-3UTR CAA 90 bp GAAAGGAGGACACTGGGTGGCATTGATGATGTCATTGGCAAGGTCAACAGCACAACAGTCACTTCGTTCTaGCTGGCAGTGCGCAGGTGC +
Preference number: 5 (lower is better)
Translates to: ERRTLGGIDDVIGKVNSTTVTSF*LAVRRC
Trigger: GCACCTGCGCACTGCCAGCAAGAACGAAGTGACTGT...TGTGCTGTTGACCTTGCCAATGACATCATCAATGCCACCCAGTGTCCTCCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp TGGAGAAGTCCCAAGAACAGGTGGTCATTTCTGGTAATGACATCACATGAAGAGGGTTCTTGGGTGTCCTaGGGGCCATGCTGTCTGGGC +
Preference number: 5 (lower is better)
Translates to: WRSPKNRWSFLVMTSHEEGSWVS*GPCCLG
Trigger: GCCCAGACAGCATGGCCCCAAGGACACCCAAGAACC...CTCTTCATGTGATGTCATTACCAGAAATGACCACCTGTTCTTGGGACTTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp GGAGAGGATGATGGCACCATCGCTGAAGTACACTCTGGAAATGATAACATTATTGAGCCGGTGCTGCAGTaGAAGGTGGCGTCGTACTGG +
Preference number: 5 (lower is better)
Translates to: GEDDGTIAEVHSGNDNIIEPVLQ*KVASYW
Trigger: CCAGTACGACGCCACCTTCAACTGCAGCACCGGCTC...AATAATGTTATCATTTCCAGAGTGTACTTCAGCGATGGTGCCATCATCCTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066041.12
CDS-3UTR CAA 90 bp AAAATGGCTTTGTCTGTAGTGGTGGCATCATGGAATGGAGCTATCTTCTCCATGGGTGCACGTGACGCCTaGCTGAAGGCCACTTTGGCA +
Preference number: 5 (lower is better)
Translates to: KMALSVVVASWNGAIFSMGARDA*LKATLA
Trigger: TGCCAAAGTGGCCTTCAGCAAGGCGTCACGTGCACC...CATGGAGAAGATAGCTCCATTCCATGATGCCACCACTACAGACAAAGCCATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp CTCATAGGAAGGAGGTTTAGTCCCTGCAAACAACATCATAAAACACAGACATATGGCCCTAGCAGCAGGTaGGAGTGTGAGGCAGCCAGG +
Preference number: 5 (lower is better)
Translates to: LIGRRFSPCKQHHKTQTYGPSSR*ECEAAR
Trigger: CCTGGCTGCCTCACACTCCAACCTGCTGCTAGGGCC...ATATGTCTGTGTTTTATGATGTTGTTTGCAGGGACTAAACCTCCTTCCTATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS TCA 90 bp ATCTTTCTCAGCCAGTCTCTTGAGGGAAGAGTATCGATTCAGTTCTaGTTTCACAGCAGCCTCATAGGACGGGGGAAGATGAGAGAGGTT +
Preference number: 5 (lower is better)
Translates to: IFLSQSLEGRVSIQF*FHSSLIGRGKMREV
Trigger: AACCTCTCTCATCTTCCCCCGTCCTATGAGGCTGCTGTGAAATCAGAACTGAATCGATACTCTTCCCTCAAGAGACTGGCTGAGAAAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp GACAAAGTAAAAGGAGAGATCTCATCTACTGTAACATCCCAAAAGGAGGCGTGGGGTTGCAGGTCCTGCTaGATGCCTGAGAATATCCAC +
Preference number: 5 (lower is better)
Translates to: DKVKGEISSTVTSQKEAWGCRSC*MPENIH
Trigger: GTGGATATTCTCAGGCATCAAGCAGGACCTGCAACC...CCACGCCTCCTTTTGGGATGTTACAGTAGATGAGATCTCTCCTTTTACTTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp GACATATTTGCTAGCAATGACCTCATATACAGGCCTCCTTCCTCTGGGATGACATTCTCAGCCAGTCTCTaGAGGGAAGAGTATCGATTC +
Preference number: 5 (lower is better)
Translates to: DIFASNDLIYRPPSSGMTFSASL*REEYRF
Trigger: GAATCGATACTCTTCCCTCAAGAGACTGGCTGAGAA...TGTCATCCCAGAGGAAGGAGGCCTGTATATGAGGTCATTGCTAGCAAATATGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS-3UTR CAA 90 bp CTCATAGGAAGGAGGTTTAGTCCCTGCAAACAACATCATAAAACACAGACATATACAGTCACTTCGTTCTaGCTGGCAGTGCGCAGGTGC +
Preference number: 5 (lower is better)
Translates to: LIGRRFSPCKQHHKTQTYTVTSF*LAVRRC
Trigger: GCACCTGCGCACTGCCAGCAAGAACGAAGTGACTGT...ATATGTCTGTGTTTTATGATGTTGTTTGCAGGGACTAAACCTCCTTCCTATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CAA 90 bp GGAGGCGCCCGTGCCGCTGCGCCCGTGCCACTCGCGGGGCTGGTCTaGGTGGCGTTGGCGCTGGTACCTGCCGCGCTCCCGCCGCCCGCC +
Preference number: 6 (lower is better)
Translates to: GGARAAAPVPLAGLV*VALALVPAALPPPA
Trigger: GGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCGCAGCGGCACGGGCGCCTCC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS CAA 90 bp GCAGGTGCGCGAGTAGCGCGGGCAGCGGGCCCGGGGCCACTGAGCTaGTGTCGTTGGATGGGCGCGCCCCCGCCGGGCCCGCTGCGGAGG +
Preference number: 6 (lower is better)
Translates to: AGARVARAAGPGPLS*CRWMGAPPPGPLRR
Trigger: CCTCCGCAGCGGGCCCGGCGGGGGCGCGCCCATCCAACGACACAAGCTCAGTGGCCCCGGGCCCGCTGCCCGCGCTACTCGCGCACCTGC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS CAA 90 bp CGTGCCGCTGCGCCCGTGCCACTCGCGGGGCTGGTCTTGGTGGCGTaGGCGCTGGTACCTGCCGCGCTCCCGCCGCCCGCCAGAGCCCCG +
Preference number: 6 (lower is better)
Translates to: RAAAPVPLAGLVLVA*ALVPAALPPPARAP
Trigger: CGGGGCTCTGGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCGCAGCGGCACG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS CAA 72 bp GCGCCCGTGCCACTCGCGGGGCTGGTCTTGGTGGCGTaGGCGCTGGTACCTGCCGCGCTCCCGCCGCCCGCC +
Preference number: 6 (lower is better)
Translates to: APVPLAGLVLVA*ALVPAALPPPA
Trigger: GGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS CCA 72 bp CGCCCGTGCCACTCGCGGGGCTGGTCTTGGTGGCGTTaGCGCTGGTACCTGCCGCGCTCCCGCCGCCCGCCA +
Preference number: 6 (lower is better)
Translates to: RPCHSRGWSWWR*RWYLPRSRRPP
Trigger: TGGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS CCA 72 bp GCGCCCGTGCCGCTGCGCCCGTGCCACTCGCGGGGCTaGTCTTGGTGGCGTTGGCGCTGGTACCTGCCGCGC +
Preference number: 6 (lower is better)
Translates to: APVPLRPCHSRG*SWWRWRWYLPR
Trigger: GCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGTGGCACGGGCGCAGCGGCACGGGCGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS GCA 72 bp CGCGGGGCTGGTCTTGGTGGCGTTGGCGCTGGTACCTaGCGCGCTCCCGCCGCCCGCCAGAGCCCCGGTCAA +
Preference number: 6 (lower is better)
Translates to: RGAGLGGVGAGT*RAPAARQSPGQ
Trigger: TTGACCGGGGCTCTGGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS CCA 72 bp GCCTCCAGCCAGCGGCGGGGGCGTGGTGGCCCAGCGTaGCGTGTCGTAGTTGGAGCAGGAGGCCTGCGCCAG +
Preference number: 6 (lower is better)
Translates to: ASSQRRGRGGPA*RVVVGAGGLRQ
Trigger: CTGGCGCAGGCCTCCTGCTCCAACTACGACACGCCACGCTGGGCCACCACGCCCCCGCCGCTGGCTGGAGGC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS GCA 72 bp TGCCCTGGCGCTGGAAGGGTGGCCTGCGGGCCAGTGTaGCCCCACCCCCGCCCGCATCAGACATCCAGGCTG +
Preference number: 6 (lower is better)
Translates to: CPGAGRVACGPV*PHPRPHQTSRL
Trigger: CAGCCTGGATGTCTGATGCGGGCGGGGGTGGGGGCACACTGGCCCGCAGGCCACCCTTCCAGCGCCAGGGCA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CCA 72 bp GCGGGGGCGTGGTGGCCCAGCGTGGCGTGTCGTAGTTaGAGCAGGAGGCCTGCGCCAGGCGCATGTGGCGGT +
Preference number: 6 (lower is better)
Translates to: AGAWWPSVACRS*SRRPAPGACGG
Trigger: ACCGCCACATGCGCCTGGCGCAGGCCTCCTGCTCCAACTACGACACGCCACGCTGGGCCACCACGCCCCCGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS TCA 72 bp TCTCCCGGTGCGCCCTGGGTGCACGTGACGCCTTGCTaGAGGCCACTTTGGCACCGACGCCCACCGCCAGGG +
Preference number: 6 (lower is better)
Translates to: SPGAPWVHVTPC*RPLWHRRPPPG
Trigger: CCCTGGCGGTGGGCGTCGGTGCCAAAGTGGCCTTCAGCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 72 bp TGCTGTCTGGGCCTCCCAGCCCTGGGGTCAGAGAACTaGTTCTGGCCCGGTCCGGGCGGGTTGCAGGTCCTG +
Preference number: 6 (lower is better)
Translates to: CCLGLPALGSEN*FWPGPGGLQVL
Trigger: CAGGACCTGCAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCTGACCCCAGGGCTGGGAGGCCCAGACAGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CAA 90 bp CTGGGCACGTTGATCTCCCGGTGCGCCCTGGGTGCACGTGACGCCTaGCTGAAGGCCACTTTGGCACCGACGCCCACCGCCAGGGCGAAA +
Preference number: 6 (lower is better)
Translates to: LGTLISRCALGARDA*LKATLAPTPTARAK
Trigger: TTTCGCCCTGGCGGTGGGCGTCGGTGCCAAAGTGGCCTTCAGCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGATCAACGTGCCCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 72 bp CATACGGTAGCCACCTCCAGTGCCAGGCCGCCGGAGTaGATGCAAGGGCAGCGTTCCGCGCGGCATCTCCAG +
Preference number: 6 (lower is better)
Translates to: HTVATSSARPPE*MQGQRSARHLQ
Trigger: CTGGAGATGCCGCGCGGAACGCTGCCCTTGCATGCACTCCGGCGGCCTGGCACTGGAGGTGGCTACCGTATG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 72 bp GGGGGCAGTGCAGGACTTCGTGGGGGTGACAGCAGGTaGTCGCGACTCTGGCGAAGCGCCTCAGGTGAGGAC +
Preference number: 6 (lower is better)
Translates to: GGSAGLRGGDSR*SRLWRSASGED
Trigger: GTCCTCACCTGAGGCGCTTCGCCAGAGTCGCGAGCACCTGCTGTCACCCCCACGAAGTCCTGCACTGCCCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CAA 72 bp TTGATCTCCCGGTGCGCCCTGGGTGCACGTGACGCCTaGCTGAAGGCCACTTTGGCACCGACGCCCACCGCC +
Preference number: 6 (lower is better)
Translates to: LISRCALGARDA*LKATLAPTPTA
Trigger: GGCGGTGGGCGTCGGTGCCAAAGTGGCCTTCAGCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGATCAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS TCA 72 bp CAGCAGGTGCTCGCGACTCTGGCGAAGCGCCTCAGGTaGGGACAGCAGCAGGTGTTCCTGAGACACCAGGCG +
Preference number: 6 (lower is better)
Translates to: QQVLATLAKRLR*GQQQVFLRHQA
Trigger: CGCCTGGTGTCTCAGGAACACCTGCTGCTGTCCTCACCTGAGGCGCTTCGCCAGAGTCGCGAGCACCTGCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CCA 72 bp GGACTTCGTGGGGGTGACAGCAGGTGCTCGCGACTCTaGCGAAGCGCCTCAGGTGAGGACAGCAGCAGGTGT +
Preference number: 6 (lower is better)
Translates to: GLRGGDSRCSRL*RSASGEDSSRC
Trigger: ACACCTGCTGCTGTCCTCACCTGAGGCGCTTCGCCAGAGTCGCGAGCACCTGCTGTCACCCCCACGAAGTCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS TCA 72 bp CTTCTGGCCCGGTCCGGGCGGGTTGCAGGTCCTGCTTaGTGCCTGAGAATATCCACGAGAGCTCTGGGCACG +
Preference number: 6 (lower is better)
Translates to: LLARSGRVAGPA*CLRISTRALGT
Trigger: CGTGCCCAGAGCTCTCGTGGATATTCTCAGGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGGCCAGAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 72 bp ATATCCACGAGAGCTCTGGGCACGTTGATCTCCCGGTaGGCCCTGGGTGCACGTGACGCCTTGCTGAAGGCC +
Preference number: 6 (lower is better)
Translates to: ISTRALGTLISR*ALGARDALLKA
Trigger: GGCCTTCAGCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGATCAACGTGCCCAGAGCTCTCGTGGATAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 72 bp TGTGGCGGTGCTCGCAGCAGAAACGGTAGTGGCAGGTaGCACAACAGAAGCGGTAGGAGCCGGTGCTGCAGT +
Preference number: 6 (lower is better)
Translates to: CGGARSRNGSGR*HNRSGRSRCCS
Trigger: ACTGCAGCACCGGCTCCTACCGCTTCTGTTGTGGCACCTGCCACTACCGTTTCTGCTGCGAGCACCGCCACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000119433.4
CDS GCA 72 bp ACTGCTTCTGGCCCGGTCCGGGCGGGTTGCAGGTCCTaGTTGATGCCTGAGAATATCCACGAGAGCTCTGGG +
Preference number: 6 (lower is better)
Translates to: TASGPVRAGCRS*LMPENIHESSG
Trigger: CCCAGAGCTCTCGTGGATATTCTCAGGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGGCCAGAAGCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CAA 90 bp CCGCCGGAGTGCATGCAAGGGCAGCGTTCCGCGCGGCATCTCCAGTaGTCTGCGCTTCAGGTAGGCTTCATCCAGATCTTTCTCAGCCAG +
Preference number: 6 (lower is better)
Translates to: PPECMQGQRSARHLQ*SALQVGFIQIFLSQ
Trigger: CTGGCTGAGAAAGATCTGGATGAAGCCTACCTGAAGCGCAGACAACTGGAGATGCCGCGCGGAACGCTGCCCTTGCATGCACTCCGGCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS TCA 72 bp GCCAGTCCAGTGTGGCGGCGTGGTGCTTGGGGCTGTTaGCGTTGTAGTGCAGGTTATCGAGGTTGGAGGGCT +
Preference number: 6 (lower is better)
Translates to: ASPVWRRGAWGC*RCSAGYRGWRA
Trigger: AGCCCTCCAACCTCGATAACCTGCACTACAACGTCAACAGCCCCAAGCACCACGCCGCCACACTGGACTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS TCA 72 bp GGTGTTCCTGAGACACCAGGCGCGCTCGAGGCAACGTaGACTCATAGCGGGAAGCTCGGCTACCATCACCCA +
Preference number: 6 (lower is better)
Translates to: GVPETPGALEAT*THSGKLGYHHP
Trigger: TGGGTGATGGTAGCCGAGCTTCCCGCTATGAGTTCACGTTGCCTCGAGCGCGCCTGGTGTCTCAGGAACACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 72 bp GGTCAGAGAACTGCTTCTGGCCCGGTCCGGGCGGGTTaGAGGTCCTGCTTGATGCCTGAGAATATCCACGAG +
Preference number: 6 (lower is better)
Translates to: GQRTASGPVRAG*RSCLMPENIHE
Trigger: CTCGTGGATATTCTCAGGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCTGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 72 bp CAGACAGTCACTTCGTTCTTGCTGGCAGTGCGCAGGTaGTGGGGCAGGTGGTGCCCAGGAATGAACTGCAGC +
Preference number: 6 (lower is better)
Translates to: QTVTSFLLAVRR*WGRWCPGMNCS
Trigger: GCTGCAGTTCATTCCTGGGCACCACCTGCCCCAGCACCTGCGCACTGCCAGCAAGAACGAAGTGACTGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CCA 72 bp GGGCTTCATGGTGTTGTAAAGGTTCTTGGGTGTCCTTaGGGCCATGCTGTCTGGGCCTCCCAGCCCTGGGGT +
Preference number: 6 (lower is better)
Translates to: GLHGVVKVLGCP*GHAVWASQPWG
Trigger: ACCCCAGGGCTGGGAGGCCCAGACAGCATGGCCCCAAGGACACCCAAGAACCTTTACAACACCATGAAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CAA 72 bp AGGGCTTCATGGTGTTGTAAAGGTTCTTGGGTGTCCTaGGGGCCATGCTGTCTGGGCCTCCCAGCCCTGGGG +
Preference number: 6 (lower is better)
Translates to: RASWCCKGSWVS*GPCCLGLPALG
Trigger: CCCCAGGGCTGGGAGGCCCAGACAGCATGGCCCCAAGGACACCCAAGAACCTTTACAACACCATGAAGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CAA 90 bp CAGAGAACTGCTTCTGGCCCGGTCCGGGCGGGTTGCAGGTCCTGCTaGATGCCTGAGAATATCCACGAGAGCTCTGGGCACGTTGATCTC +
Preference number: 6 (lower is better)
Translates to: QRTASGPVRAGCRSC*MPENIHESSGHVDL
Trigger: GAGATCAACGTGCCCAGAGCTCTCGTGGATATTCTCAGGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CAA 90 bp CGAGGTTGGAGGGCTTCATGGTGTTGTAAAGGTTCTTGGGTGTCCTaGGGGCCATGCTGTCTGGGCCTCCCAGCCCTGGGGTCAGAGAAC +
Preference number: 6 (lower is better)
Translates to: RGWRASWCCKGSWVS*GPCCLGLPALGSEN
Trigger: GTTCTCTGACCCCAGGGCTGGGAGGCCCAGACAGCATGGCCCCAAGGACACCCAAGAACCTTTACAACACCATGAAGCCCTCCAACCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS GCA 72 bp GCAAGGGCAGCGTTCCGCGCGGCATCTCCAGTTGTCTaGGCTTCAGGTAGGCTTCATCCAGATCTTTCTCAG +
Preference number: 6 (lower is better)
Translates to: ARAAFRAASPVV*ASGRLHPDLSQ
Trigger: CTGAGAAAGATCTGGATGAAGCCTACCTGAAGCGCAGACAACTGGAGATGCCGCGCGGAACGCTGCCCTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CAA 72 bp TGCATGCAAGGGCAGCGTTCCGCGCGGCATCTCCAGTaGTCTGCGCTTCAGGTAGGCTTCATCCAGATCTTT +
Preference number: 6 (lower is better)
Translates to: CMQGQRSARHLQ*SALQVGFIQIF
Trigger: AAAGATCTGGATGAAGCCTACCTGAAGCGCAGACAACTGGAGATGCCGCGCGGAACGCTGCCCTTGCATGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS CCA 72 bp CGTTGTAGTGCAGGTTATCGAGGTTGGAGGGCTTCATaGTGTTGTAAAGGTTCTTGGGTGTCCTTGGGGCCA +
Preference number: 6 (lower is better)
Translates to: RCSAGYRGWRAS*CCKGSWVSLGP
Trigger: TGGCCCCAAGGACACCCAAGAACCTTTACAACACCATGAAGCCCTCCAACCTCGATAACCTGCACTACAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
CDS TCA 72 bp AGCCAGTCTCTTGAGGGAAGAGTATCGATTCAGTTCTaGTTTCACAGCAGCCTCATAGGACGGGGGAAGATG +
Preference number: 6 (lower is better)
Translates to: SQSLEGRVSIQF*FHSSLIGRGKM
Trigger: CATCTTCCCCCGTCCTATGAGGCTGCTGTGAAATCAGAACTGAATCGATACTCTTCCCTCAAGAGACTGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4
CDS TCA 72 bp GGTAGGCTTCATCCAGATCTTTCTCAGCCAGTCTCTTaGGGGAAGAGTATCGATTCAGTTCTGATTTCACAG +
Preference number: 6 (lower is better)
Translates to: GRLHPDLSQPVS*GKSIDSVLISQ
Trigger: CTGTGAAATCAGAACTGAATCGATACTCTTCCCTCAAGAGACTGGCTGAGAAAGATCTGGATGAAGCCTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066041.12
ENSMUST00000117452.8
ENSMUST00000119433.4