Pregenerated sensors for SHISA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041889Ensembl transcript IDs: ENSMUST00000041240.4
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGCCCAGGATGGGGCTGATGGTGGCACTCTCCTCCCACCGGTGCTaGCCTCCCCTGCTGTGGAATGTGGAGCAGGCAGCAGTCCGGGTT | + |
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Preference number: 1 (lower is better) Translates to: LPRMGLMVALSSHRC*PPLLWNVEQAAVRV Trigger: AACCCGGACTGCTGCCTGCTCCACATTCCACAGCAGGGGAGGGCAGCACCGGTGGGAGGAGAGTGCCACCATCAGCCCCATCCTGGGCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR GCA 90 bp | GTTCTGCCCAGGATGGGGCTGATGGTGGCACTCTCCTCCCACCGGTaGTGCCCTCCCCTGCTGTGGAATGTGGAGCAGGCAGCAGTCCGG | + |
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Preference number: 1 (lower is better) Translates to: VLPRMGLMVALSSHR*CPPLLWNVEQAAVR Trigger: CCGGACTGCTGCCTGCTCCACATTCCACAGCAGGGGAGGGCAGCACCGGTGGGAGGAGAGTGCCACCATCAGCCCCATCCTGGGCAGAAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR CCA 90 bp | GGAGGCCTGAGCTCCAGCCAATTGGGCAGCCAGAGGGAAGGGCTGTaGCCAGCTGTTGATAGAGCCCCCTCACTTGTCTCCACCTCAGCC | + |
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Preference number: 1 (lower is better) Translates to: GGLSSSQLGSQREGL*PAVDRAPSLVSTSA Trigger: GGCTGAGGTGGAGACAAGTGAGGGGGCTCTATCAACAGCTGGCCACAGCCCTTCCCTCTGGCTGCCCAATTGGCTGGAGCTCAGGCCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR CCA 90 bp | CGTGAGCACCCTCTCTCTAGCTGCCACAAATCTGCTCAACAGCGTTaGAAAACAGTCCAGAGATGCTCAGGGGTTCTGCCCAGGATGGGG | + |
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Preference number: 1 (lower is better) Translates to: REHPLSSCHKSAQQR*KTVQRCSGVLPRMG Trigger: CCCCATCCTGGGCAGAACCCCTGAGCATCTCTGGACTGTTTTCCAACGCTGTTGAGCAGATTTGTGGCAGCTAGAGAGAGGGTGCTCACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR TCA 90 bp | GGGTCCCACCTTTCTGATTGGGGTCCTGGGCACAGAGGGACGACTTaGAAACAGAGACTGTGGCCTAGGCTCTCATCTTACTCCCAGTCT | + |
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Preference number: 1 (lower is better) Translates to: GSHLSDWGPGHRGTT*KQRLWPRLSSYSQS Trigger: AGACTGGGAGTAAGATGAGAGCCTAGGCCACAGTCTCTGTTTTCAAGTCGTCCCTCTGTGCCCAGGACCCCAATCAGAAAGGTGGGACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR TCA 90 bp | CCTAGGCTCTCATCTTACTCCCAGTCTCCCAGTAAAAATAGCTCATaGATCCCAAGTCCTCCCTACCCACCCCTCATCCACGGCCTGGTT | + |
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Preference number: 1 (lower is better) Translates to: PRLSSYSQSPSKNSS*IPSPPYPPLIHGLV Trigger: AACCAGGCCGTGGATGAGGGGTGGGTAGGGAGGACTTGGGATTCATGAGCTATTTTTACTGGGAGACTGGGAGTAAGATGAGAGCCTAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR TCA 90 bp | AGGAGGGGTCCCACCTTTCTGATTGGGGTCCTGGGCACAGAGGGACGACTTGAAGCCCAAGGCTTGGTTTaGCTGGGGGCTGGCCTGATG | + |
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Preference number: 2 (lower is better) Translates to: RRGPTFLIGVLGTEGRLEAQGLV*LGAGLM Trigger: CATCAGGCCAGCCCCCAGTCAAACCAAGCCTTGGGC...TTCAAGTCGTCCCTCTGTGCCCAGGACCCCAATCAGAAAGGTGGGACCCCTCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGGGTCCCACCTTTCTGATTGGGGTCCTGGGCACAGAGGGACGACTTGAACACGTTCCACTTCTCTaGGGCTCTGTCCTCAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: RRGPTFLIGVLGTEGRLEHVPLL*GSVLSR Trigger: CCTGCTGAGGACAGAGCCCCAGAGAAGTGGAACGTG...TTCAAGTCGTCCCTCTGTGCCCAGGACCCCAATCAGAAAGGTGGGACCCCTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR CCA 90 bp | GGTCCTGAAAAGCACGTGAGCACCCTCTCTCTAGCTGCCACAAATCTGCTCAACTCCCACCTTTCTGATTaGGGTCCTGGGCACAGAGGG | + |
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Preference number: 2 (lower is better) Translates to: GPEKHVSTLSLAATNLLNSHLSD*GPGHRG Trigger: CCCTCTGTGCCCAGGACCCCAATCAGAAAGGTGGGA...GTTGAGCAGATTTGTGGCAGCTAGAGAGAGGGTGCTCACGTGCTTTTCAGGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR CCA 90 bp | GCAGGGTTAAGAGAAGGGGCCAGTGATTCCACTGATGAGTTACAGCATTACAGCCACCTCAGCCCAAACTaGGCATATAGGAGGGGTCCC | + |
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Preference number: 2 (lower is better) Translates to: AGLREGASDSTDELQHYSHLSPN*AYRRGP Trigger: GGGACCCCTCCTATATGCCCAGTTTGGGCTGAGGTG...GCTGTAATGCTGTAACTCATCAGTGGAATCACTGGCCCCTTCTCTTAACCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR TCA 90 bp | GCAGGGTTAAGAGAAGGGGCCAGTGATTCCACTGATGAGTTACAGCATTACAGCTTAATCCAGGAGGCCTaGGCTCCAGCCAATTGGGCA | + |
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Preference number: 2 (lower is better) Translates to: AGLREGASDSTDELQHYSLIQEA*APANWA Trigger: TGCCCAATTGGCTGGAGCTCAGGCCTCCTGGATTAA...GCTGTAATGCTGTAACTCATCAGTGGAATCACTGGCCCCTTCTCTTAACCCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR CAA 90 bp | GACACTCAGAGGCAAGCTCAAGGTCAGACAGTGAAGAGACCCAGATaGGAAGGTAAGTGTTCTTGGATGGAGAGGTGTCTTTATATAGCT | + |
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Preference number: 2 (lower is better) Translates to: DTQRQAQGQTVKRPR*EGKCSWMERCLYIA Trigger: AGCTATATAAAGACACCTCTCCATCCAAGAACACTTACCTTCCAATCTGGGTCTCTTCACTGTCTGACCTTGAGCTTGCCTCTGAGTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR TCA 90 bp | CCATTATATATCATCCTCTTGACAGCTATTATCCCCATTCTATACATGAAGACAAGTAAAAATAGCTCATaGATCCCAAGTCCTCCCTAC | + |
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Preference number: 2 (lower is better) Translates to: PLYIILLTAIIPILYMKTSKNSS*IPSPPY Trigger: GTAGGGAGGACTTGGGATTCATGAGCTATTTTTACT...TGTCTTCATGTATAGAATGGGGATAATAGCTGTCAAGAGGATGATATATAATGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR GCA 72 bp | TGGTGGCACTCTCCTCCCACCGGTGCTGCCCTCCCCTaGTGTGGAATGTGGAGCAGGCAGCAGTCCGGGTTC | + |
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Preference number: 3 (lower is better) Translates to: WWHSPPTGAALP*CGMWSRQQSGF Trigger: GAACCCGGACTGCTGCCTGCTCCACATTCCACAGCAGGGGAGGGCAGCACCGGTGGGAGGAGAGTGCCACCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR CAA 90 bp | GATGGGGCTGATGGTGGCACTCTCCTCCCACCGGTGCTGCCCTCCCCTGCTGTGGGCTGTGGCCAGCTGTaGATAGAGCCCCCTCACTTG | + |
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Preference number: 3 (lower is better) Translates to: DGADGGTLLPPVLPSPAVGCGQL*IEPPHL Trigger: CAAGTGAGGGGGCTCTATCAACAGCTGGCCACAGCC...CACAGCAGGGGAGGGCAGCACCGGTGGGAGGAGAGTGCCACCATCAGCCCCATC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR GCA 72 bp | ATGGGGCTGATGGTGGCACTCTCCTCCCACCGGTGCTaGCCTCCCCTGCTGTGGAATGTGGAGCAGGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: MGLMVALSSHRC*PPLLWNVEQAA Trigger: TGCTGCCTGCTCCACATTCCACAGCAGGGGAGGGCAGCACCGGTGGGAGGAGAGTGCCACCATCAGCCCCAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR GCA 72 bp | AGGATGGGGCTGATGGTGGCACTCTCCTCCCACCGGTaGTGCCCTCCCCTGCTGTGGAATGTGGAGCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: RMGLMVALSSHR*CPPLLWNVEQA Trigger: TGCCTGCTCCACATTCCACAGCAGGGGAGGGCAGCACCGGTGGGAGGAGAGTGCCACCATCAGCCCCATCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR CCA 72 bp | GCACTCTCCTCCCACCGGTGCTGCCCTCCCCTGCTGTaGAATGTGGAGCAGGCAGCAGTCCGGGTTCAACAG | + |
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Preference number: 3 (lower is better) Translates to: ALSSHRCCPPLL*NVEQAAVRVQQ Trigger: CTGTTGAACCCGGACTGCTGCCTGCTCCACATTCCACAGCAGGGGAGGGCAGCACCGGTGGGAGGAGAGTGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR CAA 90 bp | ATGGGGCTGATGGTGGCACTCTCCTCCCACCGGTGCTGCCCTCCCCTGCTGTGGATGACTAGGAGACCCTaGCCCACCCTCAGGGCTAGA | + |
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Preference number: 3 (lower is better) Translates to: MGLMVALSSHRCCPPLLWMTRRP*PTLRAR Trigger: TCTAGCCCTGAGGGTGGGCAAGGGTCTCCTAGTCAT...CCACAGCAGGGGAGGGCAGCACCGGTGGGAGGAGAGTGCCACCATCAGCCCCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR CAA 90 bp | GGTCCTGAAAAGCACGTGAGCACCCTCTCTCTAGCTGCCACAAATCTGCTCAACCTGAGCTCCAGCCAATaGGGCAGCCAGAGGGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: GPEKHVSTLSLAATNLLNLSSSQ*GSQREG Trigger: CCCTTCCCTCTGGCTGCCCAATTGGCTGGAGCTCAG...GTTGAGCAGATTTGTGGCAGCTAGAGAGAGGGTGCTCACGTGCTTTTCAGGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR CAA 90 bp | GAGGGACGACTTGAAAACAGAGACTGTGGCCTAGGCTCTCATCTTACTCCCAGTGGCCCAAGGCTTGGTTaGACTGGGGGCTGGCCTGAT | + |
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Preference number: 3 (lower is better) Translates to: EGRLENRDCGLGSHLTPSGPRLG*TGGWPD Trigger: ATCAGGCCAGCCCCCAGTCAAACCAAGCCTTGGGCC...ACTGGGAGTAAGATGAGAGCCTAGGCCACAGTCTCTGTTTTCAAGTCGTCCCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR TCA 72 bp | GCCCAAACTGGGCATATAGGAGGGGTCCCACCTTTCTaGTTGGGGTCCTGGGCACAGAGGGACGACTTGAAA | + |
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Preference number: 3 (lower is better) Translates to: AQTGHIGGVPPF*LGSWAQRDDLK Trigger: TTTCAAGTCGTCCCTCTGTGCCCAGGACCCCAATCAGAAAGGTGGGACCCCTCCTATATGCCCAGTTTGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR-3UTR CAA 90 bp | GAGCACCCTCTCTCTAGCTGCCACAAATCTGCTCAACAGCGTTGGAAAACAGTCATAGAGCCCCCTCACTaGTCTCCACCTCAGCCCAAA | + |
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Preference number: 3 (lower is better) Translates to: EHPLSSCHKSAQQRWKTVIEPPH*SPPQPK Trigger: TTTGGGCTGAGGTGGAGACAAGTGAGGGGGCTCTAT...GACTGTTTTCCAACGCTGTTGAGCAGATTTGTGGCAGCTAGAGAGAGGGTGCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR TCA 72 bp | CTTTCTGATTGGGGTCCTGGGCACAGAGGGACGACTTaGAAACAGAGACTGTGGCCTAGGCTCTCATCTTAC | + |
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Preference number: 3 (lower is better) Translates to: LSDWGPGHRGTT*KQRLWPRLSSY Trigger: GTAAGATGAGAGCCTAGGCCACAGTCTCTGTTTTCAAGTCGTCCCTCTGTGCCCAGGACCCCAATCAGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR TCA 72 bp | ATGAAGACACTCAGAGGCAAGCTCAAGGTCAGACAGTaGAGAGACCCAGATTGGAAGGTAAGTGTTCTTGGA | + |
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Preference number: 3 (lower is better) Translates to: MKTLRGKLKVRQ*RDPDWKVSVLG Trigger: TCCAAGAACACTTACCTTCCAATCTGGGTCTCTTCACTGTCTGACCTTGAGCTTGCCTCTGAGTGTCTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CCA 90 bp | GGCCAGCTGTTGATAGAGCCCCCTCACTTGTCTCCACCTCAGCCCAAACTGGGCCCTTCAAACGTGCTCTaGAGCTGCTGGCGCCTTCGG | + |
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Preference number: 4 (lower is better) Translates to: GQLLIEPPHLSPPQPKLGPSNVL*SCWRLR Trigger: CCGAAGGCGCCAGCAGCTCCAGAGCACGTTTGAAGG...GCCCAGTTTGGGCTGAGGTGGAGACAAGTGAGGGGGCTCTATCAACAGCTGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CCA 90 bp | GCAGCCAGAGGGAAGGGCTGTGGCCAGCTGTTGATAGAGCCCCCTCACTTGTCTCATGAAACCAGGCTGTaGAGGTGCAGGGCCAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: AARGKGCGQLLIEPPHLSHETRL*RCRASF Trigger: AAAGCTGGCCCTGCACCTCCACAGCCTGGTTTCATG...AGACAAGTGAGGGGGCTCTATCAACAGCTGGCCACAGCCCTTCCCTCTGGCTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR GCA 90 bp | TCAACAGCGTTGGAAAACAGTCCAGAGATGCTCAGGGGTTCTGCCCAGGATGGGACCAGGCTGTGGAGGTaGAGGGCCAGCTTTGGGATC | + |
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Preference number: 4 (lower is better) Translates to: STALENSPEMLRGSAQDGTRLWR*RASFGI Trigger: GATCCCAAAGCTGGCCCTGCACCTCCACAGCCTGGT...CCCATCCTGGGCAGAACCCCTGAGCATCTCTGGACTGTTTTCCAACGCTGTTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR TCA 90 bp | GGCTGTGGCCAGCTGTTGATAGAGCCCCCTCACTTGTCTCCACCTCAGCCCAAATCCCGCAGCAGAAGGTaGAGAACTCGCAGTCAAATC | + |
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Preference number: 4 (lower is better) Translates to: GCGQLLIEPPHLSPPQPKSRSRR*RTRSQI Trigger: GATTTGACTGCGAGTTCTTCACCTTCTGCTGCGGGA...TTTGGGCTGAGGTGGAGACAAGTGAGGGGGCTCTATCAACAGCTGGCCACAGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CCA 90 bp | AGCCAGAGGGAAGGGCTGTGGCCAGCTGTTGATAGAGCCCCCTCACTTGTCTCCAGCAGCAGATGGTGGTaGCAACCACAGCAACAAAGA | + |
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Preference number: 4 (lower is better) Translates to: SQREGLWPAVDRAPSLVSSSRWW*QPQQQR Trigger: TCTTTGTTGCTGTGGTTGCCACCACCATCTGCTGCT...GGAGACAAGTGAGGGGGCTCTATCAACAGCTGGCCACAGCCCTTCCCTCTGGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CCA 90 bp | AGGAGGGGTCCCACCTTTCTGATTGGGGTCCTGGGCACAGAGGGACGACTTGAAAGAGGAAGCAGCAGATaGTGGTGGCAACCACAGCAA | + |
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Preference number: 4 (lower is better) Translates to: RRGPTFLIGVLGTEGRLERGSSR*WWQPQQ Trigger: TTGCTGTGGTTGCCACCACCATCTGCTGCTTCCTCT...TTCAAGTCGTCCCTCTGTGCCCAGGACCCCAATCAGAAAGGTGGGACCCCTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CCA 90 bp | AGGAGGGGTCCCACCTTTCTGATTGGGGTCCTGGGCACAGAGGGACGACTTGAAGGGGTACTGGTATACTaGCTGCATTGGGATGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: RRGPTFLIGVLGTEGRLEGVLVY*LHWDAC Trigger: ACAGGCATCCCAATGCAGCCAGTATACCAGTACCCC...TTCAAGTCGTCCCTCTGTGCCCAGGACCCCAATCAGAAAGGTGGGACCCCTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CCA 90 bp | TCAACAGCGTTGGAAAACAGTCCAGAGATGCTCAGGGGTTCTGCCCAGGATGGGTGCAGGGTTGTAGATTaGGGGCCCAGCTGGGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: STALENSPEMLRGSAQDGCRVVD*GPSWVE Trigger: CTCTACCCAGCTGGGCCCCCAATCTACAACCCTGCA...CCCATCCTGGGCAGAACCCCTGAGCATCTCTGGACTGTTTTCCAACGCTGTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR GCA 90 bp | TCAACAGCGTTGGAAAACAGTCCAGAGATGCTCAGGGGTTCTGCCCAGGATGGGTTACAGCAGAGGCGATaGCTGCTATGGTCTTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: STALENSPEMLRGSAQDGLQQRR*LLWSWD Trigger: GTCCCAAGACCATAGCAGGCATCGCCTCTGCTGTAA...CCCATCCTGGGCAGAACCCCTGAGCATCTCTGGACTGTTTTCCAACGCTGTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR GCA 90 bp | GGGCCAGTGATTCCACTGATGAGTTACAGCATTACAGCTTTAATCCAGGAGGCCGTAAGGTCAGGTCCCTaGAGCAGTACCGCTGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: GPVIPLMSYSITALIQEAVRSGP*SSTAGS Trigger: GCTACCAGCGGTACTGCTGCAGGGACCTGACCTTAC...GGCCTCCTGGATTAAAGCTGTAATGCTGTAACTCATCAGTGGAATCACTGGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR GCA 90 bp | AGTGATTCCACTGATGAGTTACAGCATTACAGCTTTAATCCAGGAGGCCTGAGCCCTGGCCTTCAAACGTaGTCTGGAGCTGCTGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: SDSTDELQHYSFNPGGLSPGLQT*SGAAGA Trigger: GGCGCCAGCAGCTCCAGAGCACGTTTGAAGGCCAGG...GCTCAGGCCTCCTGGATTAAAGCTGTAATGCTGTAACTCATCAGTGGAATCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CCA 90 bp | GGGCCAGTGATTCCACTGATGAGTTACAGCATTACAGCTTTAATCCAGGAGGCCAGCAGGGCCGCTAGGTaGGTACATGAAACCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: GPVIPLMSYSITALIQEASRAAR*VHETRL Trigger: CAGCCTGGTTTCATGTACCCACCTAGCGGCCCTGCT...GGCCTCCTGGATTAAAGCTGTAATGCTGTAACTCATCAGTGGAATCACTGGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR GCA 90 bp | GGGCCAGTGATTCCACTGATGAGTTACAGCATTACAGCTTTAATCCAGGAGGCCGCCAGGCAGTGTTTCTaGTGTCTCTCGGTGATGAGT | + |
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Preference number: 4 (lower is better) Translates to: GPVIPLMSYSITALIQEAARQCF*CLSVMS Trigger: ACTCATCACCGAGAGACAGCAGAAACACTGCCTGGC...GGCCTCCTGGATTAAAGCTGTAATGCTGTAACTCATCAGTGGAATCACTGGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CCA 90 bp | GCAGGGTTAAGAGAAGGGGCCAGTGATTCCACTGATGAGTTACAGCATTACAGCATAAGAGGGCTGTGGTaGCATATAAGGCGGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: AGLREGASDSTDELQHYSIRGLW*HIRRRS Trigger: GCTCCTCCGCCTTATATGCCACCACAGCCCTCTTAT...GCTGTAATGCTGTAACTCATCAGTGGAATCACTGGCCCCTTCTCTTAACCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CCA 90 bp | GGGCCAGTGATTCCACTGATGAGTTACAGCATTACAGCTTTAATCCAGGAGGCCTGGATAAGAGGGCTGTaGTGGCATATAAGGCGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GPVIPLMSYSITALIQEAWIRGL*WHIRRR Trigger: CCTCCGCCTTATATGCCACCACAGCCCTCTTATCCA...GGCCTCCTGGATTAAAGCTGTAATGCTGTAACTCATCAGTGGAATCACTGGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR GCA 90 bp | TATTATCCCCATTCTATACATGAAGACACTCAGAGGCAAGCTCAAGGTCAGACACAGTCAAATCCCGGATaGCAGGAGCCATTCCGGTCC | + |
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Preference number: 4 (lower is better) Translates to: YYPHSIHEDTQRQAQGQTQSNPG*QEPFRS Trigger: GGACCGGAATGGCTCCTGGCATCCGGGATTTGACTG...TGTCTGACCTTGAGCTTGCCTCTGAGTGTCTTCATGTATAGAATGGGGATAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| 3UTR CAA 72 bp | AGGCAAGCTCAAGGTCAGACAGTGAAGAGACCCAGATaGGAAGGTAAGTGTTCTTGGATGGAGAGGTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: RQAQGQTVKRPR*EGKCSWMERCL Trigger: AAGACACCTCTCCATCCAAGAACACTTACCTTCCAATCTGGGTCTCTTCACTGTCTGACCTTGAGCTTGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR GCA 90 bp | GCAGGGTTAAGAGAAGGGGCCAGTGATTCCACTGATGAGTTACAGCATTACAGCTACTGGTATACTGGCTaGATTGGGATGCCTGTCATA | + |
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Preference number: 4 (lower is better) Translates to: AGLREGASDSTDELQHYSYWYTG*IGMPVI Trigger: TATGACAGGCATCCCAATGCAGCCAGTATACCAGTA...GCTGTAATGCTGTAACTCATCAGTGGAATCACTGGCCCCTTCTCTTAACCCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CCA 90 bp | GGGCCAGTGATTCCACTGATGAGTTACAGCATTACAGCTTTAATCCAGGAGGCCGTATACTGGCTGCATTaGGATGCCTGTCATAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: GPVIPLMSYSITALIQEAVYWLH*DACHRN Trigger: ATTCCTATGACAGGCATCCCAATGCAGCCAGTATAC...GGCCTCCTGGATTAAAGCTGTAATGCTGTAACTCATCAGTGGAATCACTGGCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR GCA 90 bp | CCATTATATATCATCCTCTTGACAGCTATTATCCCCATTCTATACATGAAGACAAGCAGAGGCGATGCCTaGTATGGTCTTGGGACTGAA | + |
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Preference number: 4 (lower is better) Translates to: PLYIILLTAIIPILYMKTSRGDA*YGLGTE Trigger: TTCAGTCCCAAGACCATAGCAGGCATCGCCTCTGCT...TGTCTTCATGTATAGAATGGGGATAATAGCTGTCAAGAGGATGATATATAATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CAA 90 bp | TGGTGGCACTCTCCTCCCACCGGTGCTGCCCTCCCCTGCTGTGGAATGTGGAGCATGCCTGCTATGGTCTaGGGACTGAAGGCCAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: WWHSPPTGAALPCCGMWSMPAMV*GLKARQ Trigger: CTGCCTGGCCTTCAGTCCCAAGACCATAGCAGGCAT...GCTCCACATTCCACAGCAGGGGAGGGCAGCACCGGTGGGAGGAGAGTGCCACCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS TCA 90 bp | GGTCCCTGCAGCAGTACCGCTGGTAGCAGGTCCCGCAGCAGAAGGTaGAGAACTCGCAGTCAAATCCCGGATGCCAGGAGCCATTCCGGT | + |
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Preference number: 5 (lower is better) Translates to: GPCSSTAGSRSRSRR*RTRSQIPDARSHSG Trigger: ACCGGAATGGCTCCTGGCATCCGGGATTTGACTGCGAGTTCTTCACCTTCTGCTGCGGGACCTGCTACCAGCGGTACTGCTGCAGGGACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS-3UTR CAA 90 bp | AGCCAGAGGGAAGGGCTGTGGCCAGCTGTTGATAGAGCCCCCTCACTTGTCTCCCTGCAGGGTTGTAGATaGGGGGCCCAGCTGGGTAGA | + |
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Preference number: 5 (lower is better) Translates to: SQREGLWPAVDRAPSLVSLQGCR*GAQLGR Trigger: TCTACCCAGCTGGGCCCCCAATCTACAACCCTGCAG...GGAGACAAGTGAGGGGGCTCTATCAACAGCTGGCCACAGCCCTTCCCTCTGGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS CCA 90 bp | CATATAAGGCGGAGGAGCTGCAGGGTTGTAGATTGGGGGCCCAGCTaGGTAGAGGGGATACTGAGGAGCAGGGCCGCTAGGTGGGTACAT | + |
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Preference number: 5 (lower is better) Translates to: HIRRRSCRVVDWGPS*VEGILRSRAARWVH Trigger: ATGTACCCACCTAGCGGCCCTGCTCCTCAGTATCCCCTCTACCCAGCTGGGCCCCCAATCTACAACCCTGCAGCTCCTCCGCCTTATATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS GCA 90 bp | CAGGTCCCGCAGCAGAAGGTGAAGAACTCGCAGTCAAATCCCGGATaGCAGGAGCCATTCCGGTCCAGATACCACAAGCAGTCCTCACTC | + |
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Preference number: 5 (lower is better) Translates to: QVPQQKVKNSQSNPG*QEPFRSRYHKQSSL Trigger: GAGTGAGGACTGCTTGTGGTATCTGGACCGGAATGGCTCCTGGCATCCGGGATTTGACTGCGAGTTCTTCACCTTCTGCTGCGGGACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS CCA 90 bp | TTCGGTATAGGTAACAACAGGAACAGAGGAAGCAGCAGATGGTGGTaGCAACCACAGCAACAAAGAGGATTACAGCAGAGGCGATGCCTG | + |
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Preference number: 5 (lower is better) Translates to: FGIGNNRNRGSSRWW*QPQQQRGLQQRRCL Trigger: CAGGCATCGCCTCTGCTGTAATCCTCTTTGTTGCTGTGGTTGCCACCACCATCTGCTGCTTCCTCTGTTCCTGTTGTTACCTATACCGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS TCA 72 bp | AGCAGTACCGCTGGTAGCAGGTCCCGCAGCAGAAGGTaGAGAACTCGCAGTCAAATCCCGGATGCCAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: SSTAGSRSRSRR*RTRSQIPDARS Trigger: GCTCCTGGCATCCGGGATTTGACTGCGAGTTCTTCACCTTCTGCTGCGGGACCTGCTACCAGCGGTACTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS GCA 72 bp | CAGCAGAAGGTGAAGAACTCGCAGTCAAATCCCGGATaGCAGGAGCCATTCCGGTCCAGATACCACAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: QQKVKNSQSNPG*QEPFRSRYHKQ Trigger: CTGCTTGTGGTATCTGGACCGGAATGGCTCCTGGCATCCGGGATTTGACTGCGAGTTCTTCACCTTCTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS GCA 72 bp | GCTATGGTCTTGGGACTGAAGGCCAGGCAGTGTTTCTaGTGTCTCTCGGTGATGAGTAAGGTCAGGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: AMVLGLKARQCF*CLSVMSKVRSL Trigger: CAGGGACCTGACCTTACTCATCACCGAGAGACAGCAGAAACACTGCCTGGCCTTCAGTCCCAAGACCATAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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| CDS GCA 72 bp | CACAGCAACAAAGAGGATTACAGCAGAGGCGATGCCTaGTATGGTCTTGGGACTGAAGGCCAGGCAGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: HSNKEDYSRGDA*YGLGTEGQAVF Trigger: AAACACTGCCTGGCCTTCAGTCCCAAGACCATAGCAGGCATCGCCTCTGCTGTAATCCTCTTTGTTGCTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041240.4 |
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