Pregenerated sensors for SHISA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050010Ensembl transcript IDs: ENSMUST00000087241.7, ENSMUST00000142843.2
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATAACCCCAGTATGTGGGTACAGGGGTGCTGAGGCGGCGGGATCGTaGGTTCTAGAGCAGCCTTGCTATGTAGGGACACTCTATCTCAAA | + |
|
Preference number: 1 (lower is better) Translates to: ITPVCGYRGAEAAGS*VLEQPCYVGTLYLK Trigger: TTTGAGATAGAGTGTCCCTACATAGCAAGGCTGCTCTAGAACTCACGATCCCGCCGCCTCAGCACCCCTGTACCCACATACTGGGGTTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 90 bp | TCTAACTTCCTGGCTAAGGAGCAATGCCTTCGAACTGGTTTTCTCTaGCCCTCAACTGGAAAACAAGGGAGCCAATTAACCCTCCTCTAC | + |
|
Preference number: 1 (lower is better) Translates to: SNFLAKEQCLRTGFL*PSTGKQGSQLTLLY Trigger: GTAGAGGAGGGTTAATTGGCTCCCTTGTTTTCCAGTTGAGGGTCAGAGAAAACCAGTTCGAAGGCATTGCTCCTTAGCCAGGAAGTTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR GCA 90 bp | AAGCAGCAGGAAACAGAAAATACAGCCACTGACAAACTAGAATCGTaGTTAGCATGGGAGGGGGCATTTCCATACTCTAGCAGGCACTGT | + |
|
Preference number: 1 (lower is better) Translates to: KQQETENTATDKLES*LAWEGAFPYSSRHC Trigger: ACAGTGCCTGCTAGAGTATGGAAATGCCCCCTCCCATGCTAAGCACGATTCTAGTTTGTCAGTGGCTGTATTTTCTGTTTCCTGCTGCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 90 bp | TCAACTGGAAAACAAGGGAGCCAATTAACCCTCCTCTACCTCTGTTaGCTTGGTACAGGGATACTGAAGGTGATAGATGACTGGATGAAT | + |
|
Preference number: 1 (lower is better) Translates to: STGKQGSQLTLLYLC*LGTGILKVIDDWMN Trigger: ATTCATCCAGTCATCTATCACCTTCAGTATCCCTGTACCAAGTCAACAGAGGTAGAGGAGGGTTAATTGGCTCCCTTGTTTTCCAGTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 90 bp | CAGAAGAGCTACTACAACCAGGATGGTGATCCCGTTGTGTGGGTTTaGGCACAGTCTCAGACATTTGTTCTTTACATCCAATTATCTCTT | + |
|
Preference number: 1 (lower is better) Translates to: QKSYYNQDGDPVVWV*AQSQTFVLYIQLSL Trigger: AAGAGATAATTGGATGTAAAGAACAAATGTCTGAGACTGTGCTCAAACCCACACAACGGGATCACCATCCTGGTTGTAGTAGCTCTTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CCA 90 bp | TTTCTAGCCTGGTCCTTATGTGTCGTCACCAGACATCAAACACAGTaGCACATAAAATGTGGAATACTGAATGCTTACACTAATGTCTCC | + |
|
Preference number: 1 (lower is better) Translates to: FLAWSLCVVTRHQTQ*HIKCGILNAYTNVS Trigger: GGAGACATTAGTGTAAGCATTCAGTATTCCACATTTTATGTGCCACTGTGTTTGATGTCTGGTGACGACACATAAGGACCAGGCTAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CCA 90 bp | TTTTATATAATCTTGAATACTTGGAAGAAAGACCAGATTTGCATGTaGAAGAGAGAAGCGACTGGAAGTTGGCACCACTCTAACTTCCTG | + |
|
Preference number: 1 (lower is better) Translates to: FYIILNTWKKDQICM*KREATGSWHHSNFL Trigger: CAGGAAGTTAGAGTGGTGCCAACTTCCAGTCGCTTCTCTCTTCCACATGCAAATCTGGTCTTTCTTCCAAGTATTCAAGATTATATAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CCA 90 bp | ACAATAAATTACATAGACAACACCATCCTAGTTTTAAATACTATATaGCCAGGTGATTGGTTGGAGAATCCCACAGCAGCAGGGAAATAT | + |
|
Preference number: 1 (lower is better) Translates to: TINYIDNTILVLNTI*PGDWLENPTAAGKY Trigger: ATATTTCCCTGCTGCTGTGGGATTCTCCAACCAATCACCTGGCCATATAGTATTTAAAACTAGGATGGTGTTGTCTATGTAATTTATTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CCA 90 bp | GAAAATACAGCCACTGACAAACTAGAATCGTGCTTAGCATGGGAGGGGGCATTTCAGCAGCACTCCACCTaGCTGGCTGCCGTTTCCCTG | + |
|
Preference number: 2 (lower is better) Translates to: ENTATDKLESCLAWEGAFQQHST*LAAVSL Trigger: CAGGGAAACGGCAGCCAGCCAGGTGGAGTGCTGCTG...AAATGCCCCCTCCCATGCTAAGCACGATTCTAGTTTGTCAGTGGCTGTATTTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR TCA 90 bp | GAGAAGCGACTGGAAGTTGGCACCACTCTAACTTCCTGGCTAAGGAGCAATGCCAAGACCAGAAAGTGCTaGGTCTTTCCAGCCCTTTCT | + |
|
Preference number: 2 (lower is better) Translates to: EKRLEVGTTLTSWLRSNAKTRKC*VFPALS Trigger: AGAAAGGGCTGGAAAGACTCAGCACTTTCTGGTCTT...GGCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCCAACTTCCAGTCGCTTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CCA 90 bp | CAAGAAAGCAAACATAAAGGGAGCGGACGTTCTTGCTATGCGTCTCTGAGGCCCTCTGCCAGGAGATGGTaGCACACTGTAACTGACAGT | + |
|
Preference number: 2 (lower is better) Translates to: QESKHKGSGRSCYASLRPSARRW*HTVTDS Trigger: ACTGTCAGTTACAGTGTGCCACCATCTCCTGGCAGA...GGGCCTCAGAGACGCATAGCAAGAACGTCCGCTCCCTTTATGTTTGCTTTCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| 3UTR-3UTR TCA 90 bp | GACTCTGAGCCCTTCCAGCCACAAGAAAGCAAACATAAAGGGAGCGGACGTTCTCATCGTCTCACAGTCTaGAGTCATCAGAGCCATCAT | + |
|
Preference number: 2 (lower is better) Translates to: DSEPFQPQESKHKGSGRSHRLTV*SHQSHH Trigger: ATGATGGCTCTGATGACTTCAGACTGTGAGACGATG...AGAACGTCCGCTCCCTTTATGTTTGCTTTCTTGTGGCTGGAAGGGCTCAGAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| 3UTR-3UTR TCA 90 bp | CAAGAAAGCAAACATAAAGGGAGCGGACGTTCTTGCTATGCGTCTCTGAGGCCCCCTCCTTTTTGCTGCTaGACTTGTGTCTCTTCCAGA | + |
|
Preference number: 2 (lower is better) Translates to: QESKHKGSGRSCYASLRPPPFCC*TCVSSR Trigger: TCTGGAAGAGACACAAGTTCAGCAGCAAAAAGGAGG...GGGCCTCAGAGACGCATAGCAAGAACGTCCGCTCCCTTTATGTTTGCTTTCTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| 3UTR-3UTR GCA 90 bp | ACTATATGGCCAGGTGATTGGTTGGAGAATCCCACAGCAGCAGGGAAATATAGAACTCTCTCTCACTCTTaGTGCTCCCTCTGGCTCTTG | + |
|
Preference number: 2 (lower is better) Translates to: TIWPGDWLENPTAAGKYRTLSHS*CSLWLL Trigger: CAAGAGCCAGAGGGAGCAGCAAGAGTGAGAGAGAGT...TCTATATTTCCCTGCTGCTGTGGGATTCTCCAACCAATCACCTGGCCATATAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR TCA 90 bp | GAAAATACAGCCACTGACAAACTAGAATCGTGCTTAGCATGGGAGGGGGCATTTTGCCAATCTGGTGTTTaGGGCATTCTCTACACACCG | + |
|
Preference number: 2 (lower is better) Translates to: ENTATDKLESCLAWEGAFCQSGV*GILYTP Trigger: CGGTGTGTAGAGAATGCCTCAAACACCAGATTGGCA...AAATGCCCCCTCCCATGCTAAGCACGATTCTAGTTTGTCAGTGGCTGTATTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CAA 90 bp | ACGAAACAGGACAGAAGAGCTACTACAACCAGGATGGTGATCCCGTaGTGTGGGTTTGAGCACAGTCTCAGACATTTGTTCTTTACATCC | + |
|
Preference number: 2 (lower is better) Translates to: TKQDRRATTTRMVIP*CGFEHSLRHLFFTS Trigger: GGATGTAAAGAACAAATGTCTGAGACTGTGCTCAAACCCACACAACGGGATCACCATCCTGGTTGTAGTAGCTCTTCTGTCCTGTTTCGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR TCA 90 bp | TCTCACTCCCTTGGCCCCTGCCTAAAAATGTATCCAATGCCATGTTCAGACTCTTGCTTTCTCTCAAGATaGAAACGGCATCGTCTCACA | + |
|
Preference number: 2 (lower is better) Translates to: SHSLGPCLKMYPMPCSDSCFLSR*KRHRLT Trigger: TGTGAGACGATGCCGTTTTCATCTTGAGAGAAAGCA...AGAGTCTGAACATGGCATTGGATACATTTTTAGGCAGGGGCCAAGGGAGTGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| 3UTR-3UTR GCA 90 bp | GAGAAGCGACTGGAAGTTGGCACCACTCTAACTTCCTGGCTAAGGAGCAATGCCGCTGAACAAAAAGTCTaGAATAAATATTCCCTCAGG | + |
|
Preference number: 2 (lower is better) Translates to: EKRLEVGTTLTSWLRSNAAEQKV*NKYSLR Trigger: CCTGAGGGAATATTTATTGCAGACTTTTTGTTCAGC...GGCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCCAACTTCCAGTCGCTTCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CCA 90 bp | GAAAATACAGCCACTGACAAACTAGAATCGTGCTTAGCATGGGAGGGGGCATTTCTGTGGAACTGGGTATaGGAGGGTGAAATTAGCTCA | + |
|
Preference number: 2 (lower is better) Translates to: ENTATDKLESCLAWEGAFLWNWV*EGEISS Trigger: TGAGCTAATTTCACCCTCCCATACCCAGTTCCACAG...AAATGCCCCCTCCCATGCTAAGCACGATTCTAGTTTGTCAGTGGCTGTATTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR GCA 90 bp | ACTATATGGCCAGGTGATTGGTTGGAGAATCCCACAGCAGCAGGGAAATATAGAGTTCTAGAGCAGCCTTaGTATGTAGGGACACTCTAT | + |
|
Preference number: 2 (lower is better) Translates to: TIWPGDWLENPTAAGKYRVLEQP*YVGTLY Trigger: ATAGAGTGTCCCTACATAGCAAGGCTGCTCTAGAAC...TCTATATTTCCCTGCTGCTGTGGGATTCTCCAACCAATCACCTGGCCATATAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR GCA 90 bp | ACTATATGGCCAGGTGATTGGTTGGAGAATCCCACAGCAGCAGGGAAATATAGATCTGGCTCTTGTTCTTaGTCTCTCTCCCTCTCATTA | + |
|
Preference number: 2 (lower is better) Translates to: TIWPGDWLENPTAAGKYRSGSCS*SLSLSL Trigger: TAATGAGAGGGAGAGAGAGCAAGAACAAGAGCCAGA...TCTATATTTCCCTGCTGCTGTGGGATTCTCCAACCAATCACCTGGCCATATAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CCA 90 bp | GGCACCACTCTAACTTCCTGGCTAAGGAGCAATGCCTTCGAACTGGTTTTCTCTATTTATTTTCTAGCCTaGTCCTTATGTGTCGTCACC | + |
|
Preference number: 2 (lower is better) Translates to: GTTLTSWLRSNAFELVFSIYFLA*SLCVVT Trigger: GGTGACGACACATAAGGACCAGGCTAGAAAATAAAT...AGAGAAAACCAGTTCGAAGGCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR TCA 90 bp | CCAGTATTAACTTGCTGTAGAAAGTTGAACACTTTAGTCTTTTCCTCCGTTTCCCTACAACCAGGATGGTaGTCCCGTTGTGTGGGTTTG | + |
|
Preference number: 2 (lower is better) Translates to: PVLTCCRKLNTLVFSSVSLQPGW*SRCVGL Trigger: CAAACCCACACAACGGGATCACCATCCTGGTTGTAG...GGAAACGGAGGAAAAGACTAAAGTGTTCAACTTTCTACAGCAAGTTAATACTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CCA 90 bp | GAAAATACAGCCACTGACAAACTAGAATCGTGCTTAGCATGGGAGGGGGCATTTTCTAAGCTTCCCAGGTaGTTAGTGAAACCTTGTATT | + |
|
Preference number: 2 (lower is better) Translates to: ENTATDKLESCLAWEGAFSKLPR*LVKPCI Trigger: AATACAAGGTTTCACTAACCACCTGGGAAGCTTAGA...AAATGCCCCCTCCCATGCTAAGCACGATTCTAGTTTGTCAGTGGCTGTATTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CCA 90 bp | GAAAATACAGCCACTGACAAACTAGAATCGTGCTTAGCATGGGAGGGGGCATTTGTGGCACATAAAATGTaGAATACTGAATGCTTACAC | + |
|
Preference number: 2 (lower is better) Translates to: ENTATDKLESCLAWEGAFVAHKM*NTECLH Trigger: GTGTAAGCATTCAGTATTCCACATTTTATGTGCCAC...AAATGCCCCCTCCCATGCTAAGCACGATTCTAGTTTGTCAGTGGCTGTATTTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CCA 90 bp | CCAGTATTAACTTGCTGTAGAAAGTTGAACACTTTAGTCTTTTCCTCCGTTTCCGCAATGCCTTCGAACTaGTTTTCTCTGACCCTCAAC | + |
|
Preference number: 2 (lower is better) Translates to: PVLTCCRKLNTLVFSSVSAMPSN*FSLTLN Trigger: GTTGAGGGTCAGAGAAAACCAGTTCGAAGGCATTGC...GGAAACGGAGGAAAAGACTAAAGTGTTCAACTTTCTACAGCAAGTTAATACTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR GCA 90 bp | ACTATATGGCCAGGTGATTGGTTGGAGAATCCCACAGCAGCAGGGAAATATAGAACTCCAGTATTAACTTaGTGTAGAAAGTTGAACACT | + |
|
Preference number: 2 (lower is better) Translates to: TIWPGDWLENPTAAGKYRTPVLT*CRKLNT Trigger: AGTGTTCAACTTTCTACAGCAAGTTAATACTGGAGT...TCTATATTTCCCTGCTGCTGTGGGATTCTCCAACCAATCACCTGGCCATATAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CAA 90 bp | TTTGGAGGATTGGATAAGTTAACACACAACTGCTCAGCACTGCACTaGACTTGTGTTAGAACAGAGAACTCAGCGGAAGTTAACTTAAAA | + |
|
Preference number: 2 (lower is better) Translates to: FGGLDKLTHNCSALH*TCVRTENSAEVNLK Trigger: TTTTAAGTTAACTTCCGCTGAGTTCTCTGTTCTAACACAAGTCAAGTGCAGTGCTGAGCAGTTGTGTGTTAACTTATCCAATCCTCCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR TCA 90 bp | TTCCAATTTTGTAAGATGGTAGTTACAATACCTCTGAGTTGTTTGGAGGATTGGTATTTTAACAAAAGGTaGCTAGGTTGTCACGTTCGC | + |
|
Preference number: 2 (lower is better) Translates to: FQFCKMVVTIPLSCLEDWYFNKR*LGCHVR Trigger: GCGAACGTGACAACCTAGTCACCTTTTGTTAAAATA...CCAATCCTCCAAACAACTCAGAGGTATTGTAACTACCATCTTACAAAATTGGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR TCA 90 bp | AATGTCACTGAATGCCACGTTACAATAAATTACATAGACAACACCATCCTAGTTTCAAGAATCCTGATTTaGAAACCCCAAATAGAGTTC | + |
|
Preference number: 2 (lower is better) Translates to: NVTECHVTINYIDNTILVSRILI*KPQIEF Trigger: GAACTCTATTTGGGGTTTTCAAATCAGGATTCTTGA...AACTAGGATGGTGTTGTCTATGTAATTTATTGTAACGTGGCATTCAGTGACATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CCA 90 bp | TTCCAATTTTGTAAGATGGTAGTTACAATACCTCTGAGTTGTTTGGAGGATTGGAGACATCAAACACAGTaGCACATAAAATGTGGAATA | + |
|
Preference number: 2 (lower is better) Translates to: FQFCKMVVTIPLSCLEDWRHQTQ*HIKCGI Trigger: TATTCCACATTTTATGTGCCACTGTGTTTGATGTCT...CCAATCCTCCAAACAACTCAGAGGTATTGTAACTACCATCTTACAAAATTGGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR GCA 72 bp | GGCTTGGCCGAGACAGCAGCACTCCACCTGGCTGGCTaGCGTTTCCCTGTGTGGCCTATTCACAGCCATCGC | + |
|
Preference number: 3 (lower is better) Translates to: GLAETAALHLAG*RFPVWPIHSHR Trigger: GCGATGGCTGTGAATAGGCCACACAGGGAAACGGCAGCCAGCCAGGTGGAGTGCTGCTGTCTCGGCCAAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CCA 72 bp | GGGTTACCACACATCTCTTCAGAAGTGAGCGTGGCTTaGCCGAGACAGCAGCACTCCACCTGGCTGGCTGCC | + |
|
Preference number: 3 (lower is better) Translates to: GLPHISSEVSVA*PRQQHSTWLAA Trigger: GGCAGCCAGCCAGGTGGAGTGCTGCTGTCTCGGCCAAGCCACGCTCACTTCTGAAGAGATGTGTGGTAACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 72 bp | GTATGTGGGTACAGGGGTGCTGAGGCGGCGGGATCGTaGGTTCTAGAGCAGCCTTGCTATGTAGGGACACTC | + |
|
Preference number: 3 (lower is better) Translates to: VCGYRGAEAAGS*VLEQPCYVGTL Trigger: GAGTGTCCCTACATAGCAAGGCTGCTCTAGAACTCACGATCCCGCCGCCTCAGCACCCCTGTACCCACATAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 72 bp | ATGAGCATGGTGGGTTACCACACATCTCTTCAGAAGTaGGCGTGGCTTGGCCGAGACAGCAGCACTCCACCT | + |
|
Preference number: 3 (lower is better) Translates to: MSMVGYHTSLQK*AWLGRDSSTPP Trigger: AGGTGGAGTGCTGCTGTCTCGGCCAAGCCACGCTCACTTCTGAAGAGATGTGTGGTAACCCACCATGCTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CCA 72 bp | GCCCAAGGGCGATTAGCCAGCTTCAGCCTAGTGTCATaGGAAGCAGAATATAGGGGATGTACACTGGCAGCC | + |
|
Preference number: 3 (lower is better) Translates to: AQGRLASFSLVS*EAEYRGCTLAA Trigger: GGCTGCCAGTGTACATCCCCTATATTCTGCTTCCCATGACACTAGGCTGAAGCTGGCTAATCGCCCTTGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| 3UTR GCA 72 bp | GTGTGTGTGTGTGCACGCACTAGGAGGCAAAGAGAGTaGCGCATAAGAAAACAGGCCTCTCTTCCACCACTG | + |
|
Preference number: 3 (lower is better) Translates to: VCVCARTRRQRE*RIRKQASLPPL Trigger: CAGTGGTGGAAGAGAGGCCTGTTTTCTTATGCGGCACTCTCTTTGCCTCCTAGTGCGTGCACACACACACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| 3UTR-3UTR CAA 90 bp | GAGAAGCGACTGGAAGTTGGCACCACTCTAACTTCCTGGCTAAGGAGCAATGCCAAATATTCCCTCAGGTaGGCGGGGGAGGTGTTTTTA | + |
|
Preference number: 3 (lower is better) Translates to: EKRLEVGTTLTSWLRSNAKYSLR*AGEVFL Trigger: TAAAAACACCTCCCCCGCCAACCTGAGGGAATATTT...GGCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCCAACTTCCAGTCGCTTCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 72 bp | CGAAACAGGACAGAAGAGCTACTACAACCAGGATGGTaGTCCCGTTGTGTGGGTTTGAGCACAGTCTCAGAC | + |
|
Preference number: 3 (lower is better) Translates to: RNRTEELLQPGW*SRCVGLSTVSD Trigger: GTCTGAGACTGTGCTCAAACCCACACAACGGGATCACCATCCTGGTTGTAGTAGCTCTTCTGTCCTGTTTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR GCA 72 bp | GTGCACCTCCTCCAACCTTCTCACTCCCTTGGCCCCTaGCTAAAAATGTATCCAATGCCATGTTCAGACTCT | + |
|
Preference number: 3 (lower is better) Translates to: VHLLQPSHSLGP*LKMYPMPCSDS Trigger: AGAGTCTGAACATGGCATTGGATACATTTTTAGGCAGGGGCCAAGGGAGTGAGAAGGTTGGAGGAGGTGCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| 3UTR CCA 72 bp | CAGATTTGCATGTGGAAGAGAGAAGCGACTGGAAGTTaGCACCACTCTAACTTCCTGGCTAAGGAGCAATGC | + |
|
Preference number: 3 (lower is better) Translates to: QICMWKREATGS*HHSNFLAKEQC Trigger: GCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCCAACTTCCAGTCGCTTCTCTCTTCCACATGCAAATCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 72 bp | GCTCAGTCACCTCTCTGTGAGTCCTTCAGAGTCTACTaGAGCTTTGATTCTCTCTCTCTCTCTCTCTCTCTC | + |
|
Preference number: 3 (lower is better) Translates to: AQSPLCESFRVY*SFDSLSLSLSL Trigger: GAGAGAGAGAGAGAGAGAGAGAGAATCAAAGCTTCAGTAGACTCTGAAGGACTCACAGAGAGGTGACTGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 72 bp | TTCTCCAAAGCAGCAGGAAACAGAAAATACAGCCACTaGCAAACTAGAATCGTGCTTAGCATGGGAGGGGGC | + |
|
Preference number: 3 (lower is better) Translates to: FSKAAGNRKYSH*QTRIVLSMGGG Trigger: GCCCCCTCCCATGCTAAGCACGATTCTAGTTTGTCAGTGGCTGTATTTTCTGTTTCCTGCTGCTTTGGAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CAA 90 bp | GAAAATACAGCCACTGACAAACTAGAATCGTGCTTAGCATGGGAGGGGGCATTTAGTTCTAGAGCAGCCTaGCTATGTAGGGACACTCTA | + |
|
Preference number: 3 (lower is better) Translates to: ENTATDKLESCLAWEGAFSSRAA*LCRDTL Trigger: TAGAGTGTCCCTACATAGCAAGGCTGCTCTAGAACT...AAATGCCCCCTCCCATGCTAAGCACGATTCTAGTTTGTCAGTGGCTGTATTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 72 bp | GTCATTGTAGCCAAGAATCTCAAGACCAGAAAGTGCTaGGTCTTTCCAGCCCTTTCTTCCATGAGCATGGTG | + |
|
Preference number: 3 (lower is better) Translates to: VIVAKNLKTRKC*VFPALSSMSMV Trigger: CACCATGCTCATGGAAGAAAGGGCTGGAAAGACTCAGCACTTTCTGGTCTTGAGATTCTTGGCTACAATGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CAA 90 bp | GAAAATACAGCCACTGACAAACTAGAATCGTGCTTAGCATGGGAGGGGGCATTTATGTCTCCCCTCCCTTaGACTTCGAGCAAAATTACA | + |
|
Preference number: 3 (lower is better) Translates to: ENTATDKLESCLAWEGAFMSPLP*TSSKIT Trigger: TGTAATTTTGCTCGAAGTCAAAGGGAGGGGAGACAT...AAATGCCCCCTCCCATGCTAAGCACGATTCTAGTTTGTCAGTGGCTGTATTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CAA 90 bp | ACTATATGGCCAGGTGATTGGTTGGAGAATCCCACAGCAGCAGGGAAATATAGAGAAGAAAGACCAGATTaGCATGTGGAAGAGAGAAGC | + |
|
Preference number: 3 (lower is better) Translates to: TIWPGDWLENPTAAGKYREERPD*HVEERS Trigger: GCTTCTCTCTTCCACATGCAAATCTGGTCTTTCTTC...TCTATATTTCCCTGCTGCTGTGGGATTCTCCAACCAATCACCTGGCCATATAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR GCA 72 bp | GAAACAGAAAATACAGCCACTGACAAACTAGAATCGTaGTTAGCATGGGAGGGGGCATTTCCATACTCTAGC | + |
|
Preference number: 3 (lower is better) Translates to: ETENTATDKLES*LAWEGAFPYSS Trigger: GCTAGAGTATGGAAATGCCCCCTCCCATGCTAAGCACGATTCTAGTTTGTCAGTGGCTGTATTTTCTGTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 72 bp | TACTACAACCAGGATGGTGATCCCGTTGTGTGGGTTTaGGCACAGTCTCAGACATTTGTTCTTTACATCCAA | + |
|
Preference number: 3 (lower is better) Translates to: YYNQDGDPVVWV*AQSQTFVLYIQ Trigger: TTGGATGTAAAGAACAAATGTCTGAGACTGTGCTCAAACCCACACAACGGGATCACCATCCTGGTTGTAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CCA 72 bp | TGGTCCTTATGTGTCGTCACCAGACATCAAACACAGTaGCACATAAAATGTGGAATACTGAATGCTTACACT | + |
|
Preference number: 3 (lower is better) Translates to: WSLCVVTRHQTQ*HIKCGILNAYT Trigger: AGTGTAAGCATTCAGTATTCCACATTTTATGTGCCACTGTGTTTGATGTCTGGTGACGACACATAAGGACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CCA 72 bp | TACATAGACAACACCATCCTAGTTTTAAATACTATATaGCCAGGTGATTGGTTGGAGAATCCCACAGCAGCA | + |
|
Preference number: 3 (lower is better) Translates to: YIDNTILVLNTI*PGDWLENPTAA Trigger: TGCTGCTGTGGGATTCTCCAACCAATCACCTGGCCATATAGTATTTAAAACTAGGATGGTGTTGTCTATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CAA 90 bp | AATGTCACTGAATGCCACGTTACAATAAATTACATAGACAACACCATCCTAGTTTGCTCAGCACTGCACTaGACTTGTGTTAGAACAGAG | + |
|
Preference number: 3 (lower is better) Translates to: NVTECHVTINYIDNTILVCSALH*TCVRTE Trigger: CTCTGTTCTAACACAAGTCAAGTGCAGTGCTGAGCA...AACTAGGATGGTGTTGTCTATGTAATTTATTGTAACGTGGCATTCAGTGACATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR GCA 72 bp | TATATAATCTTGAATACTTGGAAGAAAGACCAGATTTaGATGTGGAAGAGAGAAGCGACTGGAAGTTGGCAC | + |
|
Preference number: 3 (lower is better) Translates to: YIILNTWKKDQI*MWKREATGSWH Trigger: GTGCCAACTTCCAGTCGCTTCTCTCTTCCACATGCAAATCTGGTCTTTCTTCCAAGTATTCAAGATTATATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR-3UTR CAA 90 bp | CCAGTATTAACTTGCTGTAGAAAGTTGAACACTTTAGTCTTTTCCTCCGTTTCCGAGTTGTTTGGAGGATaGGATAAGTTAACACACAAC | + |
|
Preference number: 3 (lower is better) Translates to: PVLTCCRKLNTLVFSSVSELFGG*DKLTHN Trigger: GTTGTGTGTTAACTTATCCAATCCTCCAAACAACTC...GGAAACGGAGGAAAAGACTAAAGTGTTCAACTTTCTACAGCAAGTTAATACTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CCA 72 bp | AGAATAACAAATGATCATGAATCTATTCATAGAGAATaGGGTGGTGTTTTCATGTGTGTGCTCATGGTAGGA | + |
|
Preference number: 3 (lower is better) Translates to: RITNDHESIHRE*GGVFMCVLMVG Trigger: TCCTACCATGAGCACACACATGAAAACACCACCCCATTCTCTATGAATAGATTCATGATCATTTGTTATTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| 3UTR TCA 72 bp | GATGACTGGATGAATTTCAAATCAAGAATCCTGATTTaGAAACCCCAAATAGAGTTCAGGAAACTGGATAAA | + |
|
Preference number: 3 (lower is better) Translates to: DDWMNFKSRILI*KPQIEFRKLDK Trigger: TTTATCCAGTTTCCTGAACTCTATTTGGGGTTTTCAAATCAGGATTCTTGATTTGAAATTCATCCAGTCATC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR TCA 72 bp | ACATTTTTGTGTCGCCAAGTACATGAGTATATGATTTaGCTCAATGTCACTGAATGCCACGTTACAATAAAT | + |
|
Preference number: 3 (lower is better) Translates to: TFLCRQVHEYMI*LNVTECHVTIN Trigger: ATTTATTGTAACGTGGCATTCAGTGACATTGAGTCAAATCATATACTCATGTACTTGGCGACACAAAAATGT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | GCTTGGCCGAGACAGCAGCACTCCACCTGGCTGGCTGCCGTTTCCCTGTGTGGCGGAGCGAGAAGCGGATaGGCTGCTGAGAGGGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: AWPRQQHSTWLAAVSLCGGARSG*AAERAP Trigger: AGGAGCCCTCTCAGCAGCCCATCCGCTTCTCGCTCC...GCCACACAGGGAAACGGCAGCCAGCCAGGTGGAGTGCTGCTGTCTCGGCCAAGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | GCTTGGCCGAGACAGCAGCACTCCACCTGGCTGGCTGCCGTTTCCCTGTGTGGCGGGCACCAGGCAGCTTaGCTCAGCCCTGGCAAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: AWPRQQHSTWLAAVSLCGGHQAA*LSPGKG Trigger: TCCTTTGCCAGGGCTGAGCCAAGCTGCCTGGTGCCC...GCCACACAGGGAAACGGCAGCCAGCCAGGTGGAGTGCTGCTGTCTCGGCCAAGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | GCTTGGCCGAGACAGCAGCACTCCACCTGGCTGGCTGCCGTTTCCCTGTGTGGCAGCTTGGCTCAGCCCTaGCAAAGGAGAACCTCCGCA | + |
|
Preference number: 4 (lower is better) Translates to: AWPRQQHSTWLAAVSLCGSLAQP*QRRTSA Trigger: TGCGGAGGTTCTCCTTTGCCAGGGCTGAGCCAAGCT...GCCACACAGGGAAACGGCAGCCAGCCAGGTGGAGTGCTGCTGTCTCGGCCAAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | TGGCAGCCGCTGGTCCTTCTGCTCCTCCTTTTTGCTGCTGAACTTGTGTCTCTTCCCCCTGCTCCAACCTaGCGTCGGCTGCCGCGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: WQPLVLLLLLFAAELVSLPPAPT*RRLPRS Trigger: GCTGCGCGGCAGCCGACGCCAGGTTGGAGCAGGGGG...AAGAGACACAAGTTCAGCAGCAAAAAGGAGGAGCAGAAGGACCAGCGGCTGCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| CDS-3UTR GCA 90 bp | AGAAGTGAGCGTGGCTTGGCCGAGACAGCAGCACTCCACCTGGCTGGCTGCCGTGGTAATGGGGGCTCCTaGTGGAGAGGGTATGCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: RSERGLAETAALHLAGCRGNGGS*WRGYAK Trigger: TTTTGCATACCCTCTCCAGCAGGAGCCCCCATTACC...ACGGCAGCCAGCCAGGTGGAGTGCTGCTGTCTCGGCCAAGCCACGCTCACTTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | GGCACCACTCTAACTTCCTGGCTAAGGAGCAATGCCTTCGAACTGGTTTTCTCTCCCCCTGCTCCAACCTaGCGTCGGCTGCCGCGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: GTTLTSWLRSNAFELVFSPPAPT*RRLPRS Trigger: GCTGCGCGGCAGCCGACGCCAGGTTGGAGCAGGGGG...AGAGAAAACCAGTTCGAAGGCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CAA 72 bp | TGGGTTACCACACATCTCTTCAGAAGTGAGCGTGGCTaGGCCGAGACAGCAGCACTCCACCTGGCTGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: WVTTHLFRSERG*AETAALHLAGC Trigger: GCAGCCAGCCAGGTGGAGTGCTGCTGTCTCGGCCAAGCCACGCTCACTTCTGAAGAGATGTGTGGTAACCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR GCA 90 bp | GGCACCACTCTAACTTCCTGGCTAAGGAGCAATGCCTTCGAACTGGTTTTCTCTTATTCCCCAGGCTGCTaGGCGCCCGCCGGGCCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: GTTLTSWLRSNAFELVFSYSPGC*APAGPQ Trigger: TTGGGGCCCGGCGGGCGCGCAGCAGCCTGGGGAATA...AGAGAAAACCAGTTCGAAGGCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR GCA 90 bp | CCAGTGAGTTCAGTAACTGATATCTGCTCTTTCGTTGCTTACAGACGGCTATGCTATTCCCCAGGCTGCTaGGCGCCCGCCGGGCCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: PVSSVTDICSFVAYRRLCYSPGC*APAGPQ Trigger: TTGGGGCCCGGCGGGCGCGCAGCAGCCTGGGGAATA...GCATAGCCGTCTGTAAGCAACGAAAGAGCAGATATCAGTTACTGAACTCACTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| CDS-3UTR GCA 90 bp | GAGAAGCGACTGGAAGTTGGCACCACTCTAACTTCCTGGCTAAGGAGCAATGCCGTAGCGGTGCTGGACTaGCTGGAAGCTGCTCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: EKRLEVGTTLTSWLRSNAVAVLD*LEAALR Trigger: CCTCAGAGCAGCTTCCAGGCAGTCCAGCACCGCTAC...GGCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCCAACTTCCAGTCGCTTCTC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | GGCACCACTCTAACTTCCTGGCTAAGGAGCAATGCCTTCGAACTGGTTTTCTCTGCGTCCACCCAGCCGTaGCAGTATTCCCCAGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GTTLTSWLRSNAFELVFSASTQP*QYSPGC Trigger: GCAGCCTGGGGAATACTGCCACGGCTGGGTGGACGC...AGAGAAAACCAGTTCGAAGGCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | CAGCCACAAGAAAGCAAACATAAAGGGAGCGGACGTTCTTGCTATGCGTCTCTGGCGTCCACCCAGCCGTaGCAGTATTCCCCAGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: QPQESKHKGSGRSCYASLASTQP*QYSPGC Trigger: GCAGCCTGGGGAATACTGCCACGGCTGGGTGGACGC...CAGAGACGCATAGCAAGAACGTCCGCTCCCTTTATGTTTGCTTTCTTGTGGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| CDS-3UTR GCA 90 bp | GGCACCACTCTAACTTCCTGGCTAAGGAGCAATGCCTTCGAACTGGTTTTCTCTCAGATGGTGGCGTCCTaGGTGTCGAAGTCCTCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: GTTLTSWLRSNAFELVFSQMVAS*VSKSSG Trigger: CCCCGAGGACTTCGACACGCAGGACGCCACCATCTG...AGAGAAAACCAGTTCGAAGGCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR GCA 90 bp | CCAGTGAGTTCAGTAACTGATATCTGCTCTTTCGTTGCTTACAGACGGCTATGCACCCCTCGTGATAGTTaGCCTGCGCGTCCACCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: PVSSVTDICSFVAYRRLCTPRDS*PARPPS Trigger: GCTGGGTGGACGCGCAGGGCAACTATCACGAGGGGT...GCATAGCCGTCTGTAAGCAACGAAAGAGCAGATATCAGTTACTGAACTCACTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| CDS-3UTR CCA 90 bp | GAGAAGCGACTGGAAGTTGGCACCACTCTAACTTCCTGGCTAAGGAGCAATGCCGGGTATGCAAAATACTaGGGTGATACCAGGAAACCG | + |
|
Preference number: 4 (lower is better) Translates to: EKRLEVGTTLTSWLRSNAGYAKY*GDTRKP Trigger: CGGTTTCCTGGTATCACCCCAGTATTTTGCATACCC...GGCATTGCTCCTTAGCCAGGAAGTTAGAGTGGTGCCAACTTCCAGTCGCTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | CACTGGCAATTTCTGTGTGTTCTTTTCCTTTCCCACTCAGTGCCATTAGTTAACAGCCGCAGCAGATGGTaGCGTCCTGCGTGTCGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: HWQFLCVLFLSHSVPLVNSRSRW*RPACRS Trigger: ACTTCGACACGCAGGACGCCACCATCTGCTGCGGCT...GTTAACTAATGGCACTGAGTGGGAAAGGAAAAGAACACACAGAAATTGCCAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| 3UTR CAA 72 bp | TACACTGGCAGCCGCTGGTCCTTCTGCTCCTCCTTTTaGCTGCTGAACTTGTGTCTCTTCCAGATGTTAAAC | + |
|
Preference number: 4 (lower is better) Translates to: YTGSRWSFCSSF*LLNLCLFQMLN Trigger: GTTTAACATCTGGAAGAGACACAAGTTCAGCAGCAAAAAGGAGGAGCAGAAGGACCAGCGGCTGCCAGTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| CDS-3UTR TCA 90 bp | ACTATATGGCCAGGTGATTGGTTGGAGAATCCCACAGCAGCAGGGAAATATAGATGCAAAATACTGGGGTaGTACCAGGAAACCGGACGG | + |
|
Preference number: 4 (lower is better) Translates to: TIWPGDWLENPTAAGKYRCKILG*YQETGR Trigger: CCGTCCGGTTTCCTGGTATCACCCCAGTATTTTGCA...TCTATATTTCCCTGCTGCTGTGGGATTCTCCAACCAATCACCTGGCCATATAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | CCAGTATTAACTTGCTGTAGAAAGTTGAACACTTTAGTCTTTTCCTCCGTTTCCACGAGCCGCAGCAGATaGTGGCGTCCTGCGTGTCGA | + |
|
Preference number: 4 (lower is better) Translates to: PVLTCCRKLNTLVFSSVSTSRSR*WRPACR Trigger: TCGACACGCAGGACGCCACCATCTGCTGCGGCTCGT...GGAAACGGAGGAAAAGACTAAAGTGTTCAACTTTCTACAGCAAGTTAATACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CAA 72 bp | GACAGAAGAGCTACTACAACCAGGATGGTGATCCCGTaGTGTGGGTTTGAGCACAGTCTCAGACATTTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: DRRATTTRMVIP*CGFEHSLRHLF Trigger: GAACAAATGTCTGAGACTGTGCTCAAACCCACACAACGGGATCACCATCCTGGTTGTAGTAGCTCTTCTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CAA 72 bp | CGCTGGTCCTTCTGCTCCTCCTTTTTGCTGCTGAACTaGTGTCTCTTCCAGATGTTAAACGTGAATGTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: RWSFCSSFLLLN*CLFQMLNVNVP Trigger: AGGGACATTCACGTTTAACATCTGGAAGAGACACAAGTTCAGCAGCAAAAAGGAGGAGCAGAAGGACCAGCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142843.2 |
||
| CDS-3UTR CCA 90 bp | CCAGTATTAACTTGCTGTAGAAAGTTGAACACTTTAGTCTTTTCCTCCGTTTCCAGCCGCAGCAGATGGTaGCGTCCTGCGTGTCGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: PVLTCCRKLNTLVFSSVSSRSRW*RPACRS Trigger: ACTTCGACACGCAGGACGCCACCATCTGCTGCGGCT...GGAAACGGAGGAAAAGACTAAAGTGTTCAACTTTCTACAGCAAGTTAATACTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR TCA 90 bp | TTCCAATTTTGTAAGATGGTAGTTACAATACCTCTGAGTTGTTTGGAGGATTGGAGACAGGTTGCGCGGTaGTGCCAGGATGCTCCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: FQFCKMVVTIPLSCLEDWRQVAR*CQDAPA Trigger: AGCTGGAGCATCCTGGCATCACCGCGCAACCTGTCT...CCAATCCTCCAAACAACTCAGAGGTATTGTAACTACCATCTTACAAAATTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR GCA 90 bp | AATGTCACTGAATGCCACGTTACAATAAATTACATAGACAACACCATCCTAGTTACCCCTCGTGATAGTTaGCCTGCGCGTCCACCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: NVTECHVTINYIDNTILVTPRDS*PARPPS Trigger: GCTGGGTGGACGCGCAGGGCAACTATCACGAGGGGT...AACTAGGATGGTGTTGTCTATGTAATTTATTGTAACGTGGCATTCAGTGACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | TTCCAATTTTGTAAGATGGTAGTTACAATACCTCTGAGTTGTTTGGAGGATTGGGCTGAGAGGGCTCCTTaGGTCTCAAACAGGTGCAAC | + |
|
Preference number: 4 (lower is better) Translates to: FQFCKMVVTIPLSCLEDWAERAP*VSNRCN Trigger: GTTGCACCTGTTTGAGACCCAAGGAGCCCTCTCAGC...CCAATCCTCCAAACAACTCAGAGGTATTGTAACTACCATCTTACAAAATTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CAA 72 bp | GATGGTAGTTACAATACCTCTGAGTTGTTTGGAGGATaGGATAAGTTAACACACAACTGCTCAGCACTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: DGSYNTSELFGG*DKLTHNCSALH Trigger: GTGCAGTGCTGAGCAGTTGTGTGTTAACTTATCCAATCCTCCAAACAACTCAGAGGTATTGTAACTACCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CCA 90 bp | TTCCAATTTTGTAAGATGGTAGTTACAATACCTCTGAGTTGTTTGGAGGATTGGAATGGGGGCTCCTGCTaGAGAGGGTATGCAAAATAC | + |
|
Preference number: 4 (lower is better) Translates to: FQFCKMVVTIPLSCLEDWNGGSC*RGYAKY Trigger: GTATTTTGCATACCCTCTCCAGCAGGAGCCCCCATT...CCAATCCTCCAAACAACTCAGAGGTATTGTAACTACCATCTTACAAAATTGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| 3UTR CAA 72 bp | TTATATAATCTTGAATACTTGGAAGAAAGACCAGATTaGCATGTGGAAGAGAGAAGCGACTGGAAGTTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: LYNLEYLEERPD*HVEERSDWKLA Trigger: TGCCAACTTCCAGTCGCTTCTCTCTTCCACATGCAAATCTGGTCTTTCTTCCAAGTATTCAAGATTATATAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS CCA 90 bp | TGTAAGGTGGGGGTGATGAGGGCACCAGGCAGCTTGGCTCAGCCCTaGCAAAGGAGAACCTCCGCACAGATCCTCCCGTGGAGCTGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: CKVGVMRAPGSLAQP*QRRTSAQILPWSWS Trigger: GCTCCAGCTCCACGGGAGGATCTGTGCGGAGGTTCTCCTTTGCCAGGGCTGAGCCAAGCTGCCTGGTGCCCTCATCACCCCCACCTTACA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS CCA 90 bp | TCATGGGCAAGGTCTCTGTCTGATAGCTTCGGAGCGAGAAGCGGATaGGCTGCTGAGAGGGCTCCTTGGGTCTCAAACAGGTGCAACAAT | + |
|
Preference number: 5 (lower is better) Translates to: SWARSLSDSFGARSG*AAERAPWVSNRCNN Trigger: ATTGTTGCACCTGTTTGAGACCCAAGGAGCCCTCTCAGCAGCCCATCCGCTTCTCGCTCCGAAGCTATCAGACAGAGACCTTGCCCATGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS-3UTR CAA 90 bp | CCAGTATTAACTTGCTGTAGAAAGTTGAACACTTTAGTCTTTTCCTCCGTTTCCAGGGCACCAGGCAGCTaGGCTCAGCCCTGGCAAAGG | + |
|
Preference number: 5 (lower is better) Translates to: PVLTCCRKLNTLVFSSVSRAPGS*AQPWQR Trigger: CCTTTGCCAGGGCTGAGCCAAGCTGCCTGGTGCCCT...GGAAACGGAGGAAAAGACTAAAGTGTTCAACTTTCTACAGCAAGTTAATACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS TCA 72 bp | CGACGATCAGGAAGGGGACATAGACAGGTTGCGCGGTaGTGCCAGGATGCTCCAGCTCTCCGCGGTCGTTGG | + |
|
Preference number: 6 (lower is better) Translates to: RRSGRGHRQVAR*CQDAPALRGRW Trigger: CCAACGACCGCGGAGAGCTGGAGCATCCTGGCATCACCGCGCAACCTGTCTATGTCCCCTTCCTGATCGTCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS CAA 72 bp | GATGGAGCCGACGATCAGGAAGGGGACATAGACAGGTaGCGCGGTGATGCCAGGATGCTCCAGCTCTCCGCG | + |
|
Preference number: 6 (lower is better) Translates to: DGADDQEGDIDR*RGDARMLQLSA Trigger: CGCGGAGAGCTGGAGCATCCTGGCATCACCGCGCAACCTGTCTATGTCCCCTTCCTGATCGTCGGCTCCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS CCA 72 bp | AGGTCTCTGTCTGATAGCTTCGGAGCGAGAAGCGGATaGGCTGCTGAGAGGGCTCCTTGGGTCTCAAACAGG | + |
|
Preference number: 6 (lower is better) Translates to: RSLSDSFGARSG*AAERAPWVSNR Trigger: CCTGTTTGAGACCCAAGGAGCCCTCTCAGCAGCCCATCCGCTTCTCGCTCCGAAGCTATCAGACAGAGACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||
| CDS CCA 72 bp | GTGATACCAGGAAACCGGACGGTTGGGTTAGGTGTATaGTGTGACCAGTGGTGTAAGGTGGGGGTGATGAGG | + |
|
Preference number: 6 (lower is better) Translates to: VIPGNRTVGLGV*CDQWCKVGVMR Trigger: CCTCATCACCCCCACCTTACACCACTGGTCACACCATACACCTAACCCAACCGTCCGGTTTCCTGGTATCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087241.7 |
||