Pregenerated sensors for SHISA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044461Ensembl transcript IDs: ENSMUST00000053949.7
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTGAGGACACAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTaGATCTGGAGACACACACAGACACGCTGCTGTGGAGATGTCCCC | + |
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Preference number: 1 (lower is better) Translates to: LEDTGGNSRGCGFQF*IWRHTQTRCCGDVP Trigger: GGGGACATCTCCACAGCAGCGTGTCTGTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTGTGTCCTCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR TCA 90 bp | TTGGGACTATTTAGACAAGGGGATCCCAAAACTGGGCAGAACAAATaGACCACCAGGCTGTATCATGAGGCAAAGTTGAAAGTAACTTGG | + |
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Preference number: 1 (lower is better) Translates to: LGLFRQGDPKTGQNK*TTRLYHEAKLKVTW Trigger: CCAAGTTACTTTCAACTTTGCCTCATGATACAGCCTGGTGGTTCATTTGTTCTGCCCAGTTTTGGGATCCCCTTGTCTAAATAGTCCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR TCA 90 bp | GGACACAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACAGGTACACCACCAACTTaGGCAGACTTGTGGTGCAAG | + |
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Preference number: 2 (lower is better) Translates to: GHRWQLQGLWLSILHLETGTPPT*ADLWCK Trigger: CTTGCACCACAAGTCTGCTCAAGTTGGTGGTGTACC...TGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTGTGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR TCA 90 bp | CATCGGCCCATTGATAATTTCCTGCCCTTGGGACTATTTAGACAAGGGGATCCCACATCCTTCAACCCCTaGCTCTGGCAGCCACACCTC | + |
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Preference number: 2 (lower is better) Translates to: HRPIDNFLPLGLFRQGDPTSFNP*LWQPHL Trigger: GAGGTGTGGCTGCCAGAGTCAGGGGTTGAAGGATGT...GGGATCCCCTTGTCTAAATAGTCCCAAGGGCAGGAAATTATCAATGGGCCGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR TCA 90 bp | GGGATGCCATGTCTCCCTGGGGAGCTTTTCTCTGGATTTCATAGCTCCTGCTGCAGCGGACAACCTATCTaGGCATCTCCTCAGTACAGT | + |
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Preference number: 2 (lower is better) Translates to: GMPCLPGELFSGFHSSCCSGQPI*ASPQYS Trigger: ACTGTACTGAGGAGATGCTCAGATAGGTTGTCCGCT...GCAGCAGGAGCTATGAAATCCAGAGAAAAGCTCCCCAGGGAGACATGGCATCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR CCA 90 bp | CCTGTGCCCGCCGCTGAAACAGAAAGGAATAAAGACATCCTTCAACCCCTGACTTTTCAATTTTGCATCTaGAGACACACACAGACACGC | + |
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Preference number: 2 (lower is better) Translates to: PVPAAETERNKDILQPLTFQFCI*RHTQTR Trigger: GCGTGTCTGTGTGTGTCTCCAGATGCAAAATTGAAA...AGTCAGGGGTTGAAGGATGTCTTTATTCCTTTCTGTTTCAGCGGCGGGCACAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR CCA 90 bp | CCTTGGGACTATTTAGACAAGGGGATCCCAAAACTGGGCAGAACAAATGAACCACAACTCCAGGGGCTGTaGCTTTCAATTTTGCATCTG | + |
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Preference number: 2 (lower is better) Translates to: PWDYLDKGIPKLGRTNEPQLQGL*LSILHL Trigger: CAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTG...TGGTTCATTTGTTCTGCCCAGTTTTGGGATCCCCTTGTCTAAATAGTCCCAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGTATCATGAGGCAAAGTTGAAAGTAACTTGGAGAGCAGCAGATGACAGCTCAAAAGGAGAGGAATaGCTTCAATGCCACTCCACC | + |
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Preference number: 2 (lower is better) Translates to: RLYHEAKLKVTWRAADDSSKGEE*LQCHST Trigger: GGTGGAGTGGCATTGAAGCCATTCCTCTCCTTTTGA...GCTGTCATCTGCTGCTCTCCAAGTTACTTTCAACTTTGCCTCATGATACAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR GCA 90 bp | ACAAACAAACAAACAAAACAAAAACCACATCCAATTGCTTCTTCTGTAGAGCCATGTGGCTTTCAATTTTaGATCTGGAGACACACACAG | + |
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Preference number: 2 (lower is better) Translates to: TNKQTKQKPHPIASSVEPCGFQF*IWRHTQ Trigger: CTGTGTGTGTCTCCAGATGCAAAATTGAAAGCCACA...TGGCTCTACAGAAGAAGCAATTGGATGTGGTTTTTGTTTTGTTTGTTTGTTTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR TCA 72 bp | TCATCCGGAAGCGCATCGGCGGGTACACCACCAACTTaGGCAGACTTGTGGTGCAAGAATCAGGCCCCATGT | + |
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Preference number: 3 (lower is better) Translates to: SSGSASAGTPPT*ADLWCKNQAPC Trigger: ACATGGGGCCTGATTCTTGCACCACAAGTCTGCTCAAGTTGGTGGTGTACCCGCCGATGCGCTTCCGGATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR GCA 72 bp | ACAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTaGATCTGGAGACACACACAGACACGCTGCTGTGGA | + |
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Preference number: 3 (lower is better) Translates to: TGGNSRGCGFQF*IWRHTQTRCCG Trigger: TCCACAGCAGCGTGTCTGTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR GCA 72 bp | AGCCCAGGTAAAGGGGCGGTAATGGGCATTCTCCTGTaGCCGCCGCTGAAACAGAAAGGAATAAAGACATCC | + |
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Preference number: 3 (lower is better) Translates to: SPGKGAVMGILL*PPLKQKGIKTS Trigger: GGATGTCTTTATTCCTTTCTGTTTCAGCGGCGGGCACAGGAGAATGCCCATTACCGCCCCTTTACCTGGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR CAA 90 bp | GGGATGCCATGTCTCCCTGGGGAGCTTTTCTCTGGATTTCATAGCTCCTGCTGCGATAATTTCCTGCCCTaGGGACTATTTAGACAAGGG | + |
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Preference number: 3 (lower is better) Translates to: GMPCLPGELFSGFHSSCCDNFLP*GLFRQG Trigger: CCCTTGTCTAAATAGTCCCAAGGGCAGGAAATTATC...GCAGCAGGAGCTATGAAATCCAGAGAAAAGCTCCCCAGGGAGACATGGCATCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR TCA 72 bp | TCACGTTTGAGGTTTAAGTGCCACCTCATGTCCCAGTaGCAGCGGACAACCTATCTGAGCATCTCCTCAGTA | + |
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Preference number: 3 (lower is better) Translates to: SRLRFKCHLMSQ*QRTTYLSISSV Trigger: TACTGAGGAGATGCTCAGATAGGTTGTCCGCTGTCACTGGGACATGAGGTGGCACTTAAACCTCAAACGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR CCA 72 bp | CTGATCTTCATCGGCCCATTGATAATTTCCTGCCCTTaGGACTATTTAGACAAGGGGATCCCAAAACTGGGC | + |
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Preference number: 3 (lower is better) Translates to: LIFIGPLIISCP*DYLDKGIPKLG Trigger: GCCCAGTTTTGGGATCCCCTTGTCTAAATAGTCCCAAGGGCAGGAAATTATCAATGGGCCGATGAAGATCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR CAA 90 bp | CCTTGGGACTATTTAGACAAGGGGATCCCAAAACTGGGCAGAACAAATGAACCACTGTGGCTTTCAATTTaGCATCTGGAGACACACACA | + |
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Preference number: 3 (lower is better) Translates to: PWDYLDKGIPKLGRTNEPLWLSI*HLETHT Trigger: TGTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAG...TGGTTCATTTGTTCTGCCCAGTTTTGGGATCCCCTTGTCTAAATAGTCCCAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR TCA 72 bp | AACTGGGCAGAACAAATGAACCACCAGGCTGTATCATaGGGCAAAGTTGAAAGTAACTTGGAGAGCAGCAGA | + |
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Preference number: 3 (lower is better) Translates to: NWAEQMNHQAVS*GKVESNLESSR Trigger: TCTGCTGCTCTCCAAGTTACTTTCAACTTTGCCTCATGATACAGCCTGGTGGTTCATTTGTTCTGCCCAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR CAA 90 bp | CCTTGGGACTATTTAGACAAGGGGATCCCAAAACTGGGCAGAACAAATGAACCATCCACCCCCAGAATGTaGAATGTCTTCCTTAGAAAT | + |
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Preference number: 3 (lower is better) Translates to: PWDYLDKGIPKLGRTNEPSTPRM*NVFLRN Trigger: ATTTCTAAGGAAGACATTCAACATTCTGGGGGTGGA...TGGTTCATTTGTTCTGCCCAGTTTTGGGATCCCCTTGTCTAAATAGTCCCAAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR TCA 72 bp | TTTAGACAAGGGGATCCCAAAACTGGGCAGAACAAATaGACCACCAGGCTGTATCATGAGGCAAAGTTGAAA | + |
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Preference number: 3 (lower is better) Translates to: FRQGDPKTGQNK*TTRLYHEAKLK Trigger: TTTCAACTTTGCCTCATGATACAGCCTGGTGGTTCATTTGTTCTGCCCAGTTTTGGGATCCCCTTGTCTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR CCA 72 bp | ACCAGGCTGTATCATGAGGCAAAGTTGAAAGTAACTTaGAGAGCAGCAGATGACAGCTCATGTTTTCAATGG | + |
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Preference number: 3 (lower is better) Translates to: TRLYHEAKLKVT*RAADDSSCFQW Trigger: CCATTGAAAACATGAGCTGTCATCTGCTGCTCTCCAAGTTACTTTCAACTTTGCCTCATGATACAGCCTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR CCA 72 bp | GAGAAACAGATGACAGAAGGCAAGAAGAAGACGCTGTaGGTAGGATGGTATAAAACACCAAACTTCACAGTT | + |
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Preference number: 3 (lower is better) Translates to: EKQMTEGKKKTL*VGWYKTPNFTV Trigger: AACTGTGAAGTTTGGTGTTTTATACCATCCTACCCACAGCGTCTTCTTCTTGCCTTCTGTCATCTGTTTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR CAA 90 bp | ACAAACAAACAAACAAAACAAAAACCACATCCAATTGCTTCTTCTGTAGAGCCAGCTTTTGTCACACGCTaGAGGACACAGGTGGCAACT | + |
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Preference number: 3 (lower is better) Translates to: TNKQTKQKPHPIASSVEPAFVTR*RTQVAT Trigger: AGTTGCCACCTGTGTCCTCAAGCGTGTGACAAAAGC...TGGCTCTACAGAAGAAGCAATTGGATGTGGTTTTTGTTTTGTTTGTTTGTTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR-3UTR CAA 90 bp | AAGAAGAAGACGCTGTGGGTAGGATGGTATAAAACACCAAACTTCACAGTTATTTATCATGAGGCAAAGTaGAAAGTAACTTGGAGAGCA | + |
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Preference number: 3 (lower is better) Translates to: KKKTLWVGWYKTPNFTVIYHEAK*KVTWRA Trigger: TGCTCTCCAAGTTACTTTCAACTTTGCCTCATGATA...AATAACTGTGAAGTTTGGTGTTTTATACCATCCTACCCACAGCGTCTTCTTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | TCAAGCTTTTGTCACACGCTTGAGGACACAGGTGGCAACTCCAGGGGCTGTGGCTTGTCGCAGCCGCCCTaGTCTAGGCGCGCCTCGGCG | + |
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Preference number: 4 (lower is better) Translates to: SSFCHTLEDTGGNSRGCGLSQPP*SRRASA Trigger: CGCCGAGGCGCGCCTAGACCAGGGCGGCTGCGACAA...GCCACAGCCCCTGGAGTTGCCACCTGTGTCCTCAAGCGTGTGACAAAAGCTTGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | GGGATGCCATGTCTCCCTGGGGAGCTTTTCTCTGGATTTCATAGCTCCTGCTGCGCGTCCAGCCAGCCGTaGCAGTACTCGCCGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: GMPCLPGELFSGFHSSCCASSQP*QYSPLA Trigger: GGCCAGCGGCGAGTACTGCCACGGCTGGCTGGACGC...GCAGCAGGAGCTATGAAATCCAGAGAAAAGCTCCCCAGGGAGACATGGCATCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | CAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACACACACGGCGCGCCTCGGCGCTaGAGCAGCAGTAGCGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: QVATPGAVAFNFASGDTHGAPRR*SSSSAA Trigger: CGCTGCGCTACTGCTGCTCCAGCGCCGAGGCGCGCC...GTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR GCA 90 bp | GGACACAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACAATGCGCCAGACGCCCTaGGCGTCCAGCCAGCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: GHRWQLQGLWLSILHLETMRQTP*ASSQPW Trigger: CCACGGCTGGCTGGACGCGCAGGGCGTCTGGCGCAT...TGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTGTGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | GGGATGCCATGTCTCCCTGGGGAGCTTTTCTCTGGATTTCATAGCTCCTGCTGCTCCCCTACGCCCTGCTaGCGGTCGTTGTCGCAGCCG | + |
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Preference number: 4 (lower is better) Translates to: GMPCLPGELFSGFHSSCCSPTPC*RSLSQP Trigger: CGGCTGCGACAACGACCGCCAGCAGGGCGTAGGGGA...GCAGCAGGAGCTATGAAATCCAGAGAAAAGCTCCCCAGGGAGACATGGCATCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | CAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACACACACTGCCGCAGCAGATGGTaGCGTCGCCGCCGTCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: QVATPGAVAFNFASGDTHCRSRW*RRRRRS Trigger: GCTTCGACGGCGGCGACGCCACCATCTGCTGCGGCA...GTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR TCA 90 bp | GGGATGCCATGTCTCCCTGGGGAGCTTTTCTCTGGATTTCATAGCTCCTGCTGCGGAAGAGGTGGAAGGTaGGCAGCGTCCGCCCCACAT | + |
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Preference number: 4 (lower is better) Translates to: GMPCLPGELFSGFHSSCCGRGGR*AASAPH Trigger: ATGTGGGGCGGACGCTGCTCACCTTCCACCTCTTCC...GCAGCAGGAGCTATGAAATCCAGAGAAAAGCTCCCCAGGGAGACATGGCATCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | CAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACACACACAAGCGCTCGGGGCACTaGAAGCCGATGCGCCAGACG | + |
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Preference number: 4 (lower is better) Translates to: QVATPGAVAFNFASGDTHKRSGH*KPMRQT Trigger: CGTCTGGCGCATCGGCTTCCAGTGCCCCGAGCGCTT...GTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | CCTGTGCCCGCCGCTGAAACAGAAAGGAATAAAGACATCCTTCAACCCCTGACTAGCTGCCGCAGCAGATaGTGGCGTCGCCGCCGTCGA | + |
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Preference number: 4 (lower is better) Translates to: PVPAAETERNKDILQPLTSCRSR*WRRRRR Trigger: TCGACGGCGGCGACGCCACCATCTGCTGCGGCAGCT...AGTCAGGGGTTGAAGGATGTCTTTATTCCTTTCTGTTTCAGCGGCGGGCACAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | TCAAGCTTTTGTCACACGCTTGAGGACACAGGTGGCAACTCCAGGGGCTGTGGCGGAACGGCACGTAGATaGGGACTGCCGAGCTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: SSFCHTLEDTGGNSRGCGGTARR*GLPSCL Trigger: CAGACAGCTCGGCAGTCCCCATCTACGTGCCGTTCC...GCCACAGCCCCTGGAGTTGCCACCTGTGTCCTCAAGCGTGTGACAAAAGCTTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | TCAAGCTTTTGTCACACGCTTGAGGACACAGGTGGCAACTCCAGGGGCTGTGGCCGGGCAAGCAGCAATTaGTCTGTGATCTCGTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: SSFCHTLEDTGGNSRGCGRASSN*SVISSG Trigger: CCCCGACGAGATCACAGACCAATTGCTGCTTGCCCG...GCCACAGCCCCTGGAGTTGCCACCTGTGTCCTCAAGCGTGTGACAAAAGCTTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | CAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACACACACCACTGGAACTGGAGCTaGCAGCGGTGCTGGACTGAC | + |
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Preference number: 4 (lower is better) Translates to: QVATPGAVAFNFASGDTHHWNWS*QRCWTD Trigger: GTCAGTCCAGCACCGCTGCCAGCTCCAGTTCCAGTG...GTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | ATTTTGCATCTGGAGACACACACAGACACGCTGCTGTGGAGATGTCCCCTTATAGCGACGCGCGGTGCCTaGAAGAGGTGGAAGGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: ILHLETHTDTLLWRCPLIATRGA*KRWKVS Trigger: GCTCACCTTCCACCTCTTCCAGGCACCGCGCGTCGC...TATAAGGGGACATCTCCACAGCAGCGTGTCTGTGTGTGTCTCCAGATGCAAAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | CATCGGCCCATTGATAATTTCCTGCCCTTGGGACTATTTAGACAAGGGGATCCCTCTCCATCAGGCGGTTaGCCCCTGGGGCTCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: HRPIDNFLPLGLFRQGDPSPSGG*PLGLCS Trigger: AGAGCAGAGCCCCAGGGGCCAACCGCCTGATGGAGA...GGGATCCCCTTGTCTAAATAGTCCCAAGGGCAGGAAATTATCAATGGGCCGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | TCAAGCTTTTGTCACACGCTTGAGGACACAGGTGGCAACTCCAGGGGCTGTGGCTGGAAGTGCTGGCACTaGGAATCATGGGGATGGTCT | + |
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Preference number: 4 (lower is better) Translates to: SSFCHTLEDTGGNSRGCGWKCWH*ESWGWS Trigger: AGACCATCCCCATGATTCCCAGTGCCAGCACTTCCA...GCCACAGCCCCTGGAGTTGCCACCTGTGTCCTCAAGCGTGTGACAAAAGCTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | CAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACACACACAGCCCCTGGAAGTGCTaGCACTGGGAATCATGGGGA | + |
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Preference number: 4 (lower is better) Translates to: QVATPGAVAFNFASGDTHSPWKC*HWESWG Trigger: TCCCCATGATTCCCAGTGCCAGCACTTCCAGGGGCT...GTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | GGGATGCCATGTCTCCCTGGGGAGCTTTTCTCTGGATTTCATAGCTCCTGCTGCGAGGCACTGGCGTCATaGGCACAGAGTCATGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: GMPCLPGELFSGFHSSCCEALAS*AQSHAV Trigger: TACAGCATGACTCTGTGCCCATGACGCCAGTGCCTC...GCAGCAGGAGCTATGAAATCCAGAGAAAAGCTCCCCAGGGAGACATGGCATCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR CAA 72 bp | CACAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTaGCATCTGGAGACACACACAGACACGCTGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: HRWQLQGLWLSI*HLETHTDTLLW Trigger: CCACAGCAGCGTGTCTGTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR TCA 90 bp | CAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACACACACACACTGAGCCAACGATaGGGAACGGCACGTAGATGG | + |
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Preference number: 4 (lower is better) Translates to: QVATPGAVAFNFASGDTHTLSQR*GTARRW Trigger: CCATCTACGTGCCGTTCCTCATCGTTGGCTCAGTGT...GTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR TCA 90 bp | CAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACACACACGAAGGCAACGAACACTaGGCCAACGATGAGGAACGG | + |
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Preference number: 4 (lower is better) Translates to: QVATPGAVAFNFASGDTHEGNEH*ANDEER Trigger: CCGTTCCTCATCGTTGGCTCAGTGTTCGTTGCCTTC...GTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | ATTTTGCATCTGGAGACACACACAGACACGCTGCTGTGGAGATGTCCCCTTATAGGTGCCTGGAAGAGGTaGAAGGTGAGCAGCGTCCGC | + |
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Preference number: 4 (lower is better) Translates to: ILHLETHTDTLLWRCPLIGAWKR*KVSSVR Trigger: GCGGACGCTGCTCACCTTCCACCTCTTCCAGGCACC...TATAAGGGGACATCTCCACAGCAGCGTGTCTGTGTGTGTCTCCAGATGCAAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | CCTGTGCCCGCCGCTGAAACAGAAAGGAATAAAGACATCCTTCAACCCCTGACTGAGAGGATGAGCCCCTaGAAGTGCTGGCACTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: PVPAAETERNKDILQPLTERMSP*KCWHWE Trigger: TTCCCAGTGCCAGCACTTCCAGGGGCTCATCCTCTC...AGTCAGGGGTTGAAGGATGTCTTTATTCCTTTCTGTTTCAGCGGCGGGCACAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR TCA 90 bp | CCTTGGGACTATTTAGACAAGGGGATCCCAAAACTGGGCAGAACAAATGAACCAGGACTGACGAGAGGATaGGCCCCTGGAAGTGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: PWDYLDKGIPKLGRTNEPGLTRG*APGSAG Trigger: GCCAGCACTTCCAGGGGCTCATCCTCTCGTCAGTCC...TGGTTCATTTGTTCTGCCCAGTTTTGGGATCCCCTTGTCTAAATAGTCCCAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR GCA 90 bp | TATCATGAGGCAAAGTTGAAAGTAACTTGGAGAGCAGCAGATGACAGCTCATGTGGCACTGGAAGCCGATaGGCCAGACGCCCTGCGCGT | + |
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Preference number: 4 (lower is better) Translates to: YHEAKLKVTWRAADDSSCGTGSR*ARRPAR Trigger: ACGCGCAGGGCGTCTGGCGCATCGGCTTCCAGTGCC...ACATGAGCTGTCATCTGCTGCTCTCCAAGTTACTTTCAACTTTGCCTCATGATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | CATCGGCCCATTGATAATTTCCTGCCCTTGGGACTATTTAGACAAGGGGATCCCCATGAACGGAGGCACTaGCGTCATGGGCACAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: HRPIDNFLPLGLFRQGDPHERRH*RHGHRV Trigger: GACTCTGTGCCCATGACGCCAGTGCCTCCGTTCATG...GGGATCCCCTTGTCTAAATAGTCCCAAGGGCAGGAAATTATCAATGGGCCGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR GCA 90 bp | CCTTGGGACTATTTAGACAAGGGGATCCCAAAACTGGGCAGAACAAATGAACCACACGTAGATGGGGACTaGCGAGCTGTCTGGGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: PWDYLDKGIPKLGRTNEPHVDGD*RAVWAF Trigger: GAAGGCCCAGACAGCTCGGCAGTCCCCATCTACGTG...TGGTTCATTTGTTCTGCCCAGTTTTGGGATCCCCTTGTCTAAATAGTCCCAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | AGGCTGTATCATGAGGCAAAGTTGAAAGTAACTTGGAGAGCAGCAGATGACAGCTGGGAATCATGGGGATaGTCTCCATCAGGCGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: RLYHEAKLKVTWRAADDSWESWG*SPSGGW Trigger: CCAACCGCCTGATGGAGACCATCCCCATGATTCCCA...GCTGTCATCTGCTGCTCTCCAAGTTACTTTCAACTTTGCCTCATGATACAGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR TCA 90 bp | CAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACACACACCTGACAGTTGAGTACTaGGAAATTTGTGGGCATGTT | + |
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Preference number: 4 (lower is better) Translates to: QVATPGAVAFNFASGDTHLTVEY*EICGHV Trigger: AACATGCCCACAAATTTCTCAGTACTCAACTGTCAG...GTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR TCA 90 bp | ATTTTGCATCTGGAGACACACACAGACACGCTGCTGTGGAGATGTCCCCTTATAATCTGGGTGGCCTGCTaGCAGTTGAGTACTGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: ILHLETHTDTLLWRCPLIIWVAC*QLSTEK Trigger: TTTCTCAGTACTCAACTGTCAGCAGGCCACCCAGAT...TATAAGGGGACATCTCCACAGCAGCGTGTCTGTGTGTGTCTCCAGATGCAAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CCA 90 bp | AAGAAGAAGACGCTGTGGGTAGGATGGTATAAAACACCAAACTTCACAGTTATTAGGTACTGCCCTTGGTaGGGTACGATCTGGGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: KKKTLWVGWYKTPNFTVIRYCPW*GTIWVA Trigger: GGCCACCCAGATCGTACCCCACCAAGGGCAGTACCT...AATAACTGTGAAGTTTGGTGTTTTATACCATCCTACCCACAGCGTCTTCTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| 3UTR CAA 72 bp | ACTGATCTTCATCGGCCCATTGATAATTTCCTGCCCTaGGGACTATTTAGACAAGGGGATCCCAAAACTGGG | + |
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Preference number: 4 (lower is better) Translates to: TDLHRPIDNFLP*GLFRQGDPKTG Trigger: CCCAGTTTTGGGATCCCCTTGTCTAAATAGTCCCAAGGGCAGGAAATTATCAATGGGCCGATGAAGATCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR TCA 90 bp | AGGCTGTATCATGAGGCAAAGTTGAAAGTAACTTGGAGAGCAGCAGATGACAGCAATTTGTGGGCATGTTaGCATACACATTGTTCATGG | + |
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Preference number: 4 (lower is better) Translates to: RLYHEAKLKVTWRAADDSNLWAC*HTHCSW Trigger: CCATGAACAATGTGTATGTCAACATGCCCACAAATT...GCTGTCATCTGCTGCTCTCCAAGTTACTTTCAACTTTGCCTCATGATACAGCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR GCA 90 bp | ACAAACAAACAAACAAAACAAAAACCACATCCAATTGCTTCTTCTGTAGAGCCACTCTGCTGGGGATCCTaGTTTGGACGTAGACATCGG | + |
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Preference number: 4 (lower is better) Translates to: TNKQTKQKPHPIASSVEPLCWGS*FGRRHR Trigger: CCGATGTCTACGTCCAAAGCAGGATCCCCAGCAGAG...TGGCTCTACAGAAGAAGCAATTGGATGTGGTTTTTGTTTTGTTTGTTTGTTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS GCA 90 bp | GAGCCCGGGCCCCCGAGTTCGCACTGGAACTGGAGCTGGCAGCGGTaGTGGACTGACGAGAGGATGAGCCCCTGGAAGTGCTGGCACTGG | + |
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Preference number: 5 (lower is better) Translates to: EPGPPSSHWNWSWQR*WTDERMSPWKCWHW Trigger: CCAGTGCCAGCACTTCCAGGGGCTCATCCTCTCGTCAGTCCAGCACCGCTGCCAGCTCCAGTTCCAGTGCGAACTCGGGGGCCCGGGCTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 90 bp | CCCGGGCCCCCGAGTTCGCACTGGAACTGGAGCTGGCAGCGGTGCTaGACTGACGAGAGGATGAGCCCCTGGAAGTGCTGGCACTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: PGPPSSHWNWSWQRC*TDERMSPWKCWHWE Trigger: TTCCCAGTGCCAGCACTTCCAGGGGCTCATCCTCTCGTCAGTCCAGCACCGCTGCCAGCTCCAGTTCCAGTGCGAACTCGGGGGCCCGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 90 bp | TGGTCTGTGATCTCGTCGGGGGAGCCCGGGCCCCCGAGTTCGCACTaGAACTGGAGCTGGCAGCGGTGCTGGACTGACGAGAGGATGAGC | + |
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Preference number: 5 (lower is better) Translates to: WSVISSGEPGPPSSH*NWSWQRCWTDERMS Trigger: GCTCATCCTCTCGTCAGTCCAGCACCGCTGCCAGCTCCAGTTCCAGTGCGAACTCGGGGGCCCGGGCTCCCCCGACGAGATCACAGACCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS TCA 90 bp | GCCCCCGAGTTCGCACTGGAACTGGAGCTGGCAGCGGTGCTGGACTaGCGAGAGGATGAGCCCCTGGAAGTGCTGGCACTGGGAATCATG | + |
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Preference number: 5 (lower is better) Translates to: APEFALELELAAVLD*REDEPLEVLALGIM Trigger: CATGATTCCCAGTGCCAGCACTTCCAGGGGCTCATCCTCTCGTCAGTCCAGCACCGCTGCCAGCTCCAGTTCCAGTGCGAACTCGGGGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 90 bp | TGGCAGCGGTGCTGGACTGACGAGAGGATGAGCCCCTGGAAGTGCTaGCACTGGGAATCATGGGGATGGTCTCCATCAGGCGGTTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: WQRCWTDERMSPWKC*HWESWGWSPSGGWP Trigger: GGGCCAACCGCCTGATGGAGACCATCCCCATGATTCCCAGTGCCAGCACTTCCAGGGGCTCATCCTCTCGTCAGTCCAGCACCGCTGCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS GCA 90 bp | AGCTGGCAGCGGTGCTGGACTGACGAGAGGATGAGCCCCTGGAAGTaGTGGCACTGGGAATCATGGGGATGGTCTCCATCAGGCGGTTGG | + |
|
Preference number: 5 (lower is better) Translates to: SWQRCWTDERMSPWK*WHWESWGWSPSGGW Trigger: CCAACCGCCTGATGGAGACCATCCCCATGATTCCCAGTGCCAGCACTTCCAGGGGCTCATCCTCTCGTCAGTCCAGCACCGCTGCCAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CAA 90 bp | GGACACAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACACCCTGCTGGCGGTCGTaGTCGCAGCCGCCCTGGTCT | + |
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Preference number: 5 (lower is better) Translates to: GHRWQLQGLWLSILHLETPCWRS*SQPPWS Trigger: AGACCAGGGCGGCTGCGACAACGACCGCCAGCAGGG...TGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTGTGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS TCA 90 bp | ATACACATTGTTCATGGTTCCCTCGGGCAAGCAGCAATTGGTCTGTaGTCTCGTCGGGGGAGCCCGGGCCCCCGAGTTCGCACTGGAACT | + |
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Preference number: 5 (lower is better) Translates to: IHIVHGSLGQAAIGL*SRRGSPGPRVRTGT Trigger: AGTTCCAGTGCGAACTCGGGGGCCCGGGCTCCCCCGACGAGATCACAGACCAATTGCTGCTTGCCCGAGGGAACCATGAACAATGTGTAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 90 bp | CACTGGTCTGTAGCCAGGCTGCAGGCCATCCATGAACGGAGGCACTaGCGTCATGGGCACAGAGTCATGCTGTACGGCATAGCCTACATA | + |
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Preference number: 5 (lower is better) Translates to: HWSVARLQAIHERRH*RHGHRVMLYGIAYI Trigger: TATGTAGGCTATGCCGTACAGCATGACTCTGTGCCCATGACGCCAGTGCCTCCGTTCATGGATGGCCTGCAGCCTGGCTACAGACCAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 90 bp | TGGCGTCATGGGCACAGAGTCATGCTGTACGGCATAGCCTACATATaGAGTATGCAGGTACTGCCCTTGGTGGGGTACGATCTGGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: WRHGHRVMLYGIAYI*SMQVLPLVGYDLGG Trigger: GCCACCCAGATCGTACCCCACCAAGGGCAGTACCTGCATACTCCATATGTAGGCTATGCCGTACAGCATGACTCTGTGCCCATGACGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CAA 90 bp | GGGATGCCATGTCTCCCTGGGGAGCTTTTCTCTGGATTTCATAGCTCCTGCTGCGCTGGGGATCCTGCTTaGGACGTAGACATCGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: GMPCLPGELFSGFHSSCCAGDPA*DVDIGN Trigger: GTTGCCGATGTCTACGTCCAAAGCAGGATCCCCAGC...GCAGCAGGAGCTATGAAATCCAGAGAAAAGCTCCCCAGGGAGACATGGCATCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CAA 90 bp | CAGGTGGCAACTCCAGGGGCTGTGGCTTTCAATTTTGCATCTGGAGACACACACATGCAGGTACTGCCCTaGGTGGGGTACGATCTGGGT | + |
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Preference number: 5 (lower is better) Translates to: QVATPGAVAFNFASGDTHMQVLP*VGYDLG Trigger: ACCCAGATCGTACCCCACCAAGGGCAGTACCTGCAT...GTGTGTGTCTCCAGATGCAAAATTGAAAGCCACAGCCCCTGGAGTTGCCACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS TCA 90 bp | GTATGCAGGTACTGCCCTTGGTGGGGTACGATCTGGGTGGCCTGCTaGCAGTTGAGTACTGAGAAATTTGTGGGCATGTTGACATACACA | + |
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Preference number: 5 (lower is better) Translates to: VCRYCPWWGTIWVAC*QLSTEKFVGMLTYT Trigger: TGTGTATGTCAACATGCCCACAAATTTCTCAGTACTCAACTGTCAGCAGGCCACCCAGATCGTACCCCACCAAGGGCAGTACCTGCATAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS TCA 90 bp | CCCTTGGTGGGGTACGATCTGGGTGGCCTGCTGACAGTTGAGTACTaGGAAATTTGTGGGCATGTTGACATACACATTGTTCATGGTTCC | + |
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Preference number: 5 (lower is better) Translates to: PLVGYDLGGLLTVEY*EICGHVDIHIVHGS Trigger: GGAACCATGAACAATGTGTATGTCAACATGCCCACAAATTTCTCAGTACTCAACTGTCAGCAGGCCACCCAGATCGTACCCCACCAAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CAA 90 bp | AGGCTGTATCATGAGGCAAAGTTGAAAGTAACTTGGAGAGCAGCAGATGACAGCAAATTTGTGGGCATGTaGACATACACATTGTTCATG | + |
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Preference number: 5 (lower is better) Translates to: RLYHEAKLKVTWRAADDSKFVGM*TYTLFM Trigger: CATGAACAATGTGTATGTCAACATGCCCACAAATTT...GCTGTCATCTGCTGCTCTCCAAGTTACTTTCAACTTTGCCTCATGATACAGCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS-3UTR CAA 90 bp | ACAAACAAACAAACAAAACAAAAACCACATCCAATTGCTTCTTCTGTAGAGCCAATGTTGACATACACATaGTTCATGGTTCCCTCGGGC | + |
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Preference number: 5 (lower is better) Translates to: TNKQTKQKPHPIASSVEPMLTYT*FMVPSG Trigger: GCCCGAGGGAACCATGAACAATGTGTATGTCAACAT...TGGCTCTACAGAAGAAGCAATTGGATGTGGTTTTTGTTTTGTTTGTTTGTTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 72 bp | ATGGTGGCGTCGCCGCCGTCGAAGCGCTCGGGGCACTaGAAGCCGATGCGCCAGACGCCCTGCGCGTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: MVASPPSKRSGH*KPMRQTPCASS Trigger: GCTGGACGCGCAGGGCGTCTGGCGCATCGGCTTCCAGTGCCCCGAGCGCTTCGACGGCGGCGACGCCACCAT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CAA 90 bp | TCTCGGTCTGTCCGGCCAGGCTCCCCTACGCCCTGCTGGCGGTCGTaGTCGCAGCCGCCCTGGTCTAGGCGCGCCTCGGCGCTGGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SRSVRPGSPTPCWRS*SQPPWSRRASALEQ Trigger: CTGCTCCAGCGCCGAGGCGCGCCTAGACCAGGGCGGCTGCGACAACGACCGCCAGCAGGGCGTAGGGGAGCCTGGCCGGACAGACCGAGA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS TCA 72 bp | GTTCATGGTTCCCTCGGGCAAGCAGCAATTGGTCTGTaGTCTCGTCGGGGGAGCCCGGGCCCCCGAGTTCGC | + |
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Preference number: 6 (lower is better) Translates to: VHGSLGQAAIGL*SRRGSPGPRVR Trigger: GCGAACTCGGGGGCCCGGGCTCCCCCGACGAGATCACAGACCAATTGCTGCTTGCCCGAGGGAACCATGAAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS GCA 72 bp | CCCCCGAGTTCGCACTGGAACTGGAGCTGGCAGCGGTaGTGGACTGACGAGAGGATGAGCCCCTGGAAGTGC | + |
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Preference number: 6 (lower is better) Translates to: PPSSHWNWSWQR*WTDERMSPWKC Trigger: GCACTTCCAGGGGCTCATCCTCTCGTCAGTCCAGCACCGCTGCCAGCTCCAGTTCCAGTGCGAACTCGGGGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 72 bp | AGGATGAGCCCCTGGAAGTGCTGGCACTGGGAATCATaGGGATGGTCTCCATCAGGCGGTTGGCCCCTGGGG | + |
|
Preference number: 6 (lower is better) Translates to: RMSPWKCWHWES*GWSPSGGWPLG Trigger: CCCCAGGGGCCAACCGCCTGATGGAGACCATCCCCATGATTCCCAGTGCCAGCACTTCCAGGGGCTCATCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 72 bp | CCGAGTTCGCACTGGAACTGGAGCTGGCAGCGGTGCTaGACTGACGAGAGGATGAGCCCCTGGAAGTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PSSHWNWSWQRC*TDERMSPWKCW Trigger: CCAGCACTTCCAGGGGCTCATCCTCTCGTCAGTCCAGCACCGCTGCCAGCTCCAGTTCCAGTGCGAACTCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 72 bp | ACACATTGTTCATGGTTCCCTCGGGCAAGCAGCAATTaGTCTGTGATCTCGTCGGGGGAGCCCGGGCCCCCG | + |
|
Preference number: 6 (lower is better) Translates to: THCSWFPRASSN*SVISSGEPGPP Trigger: CGGGGGCCCGGGCTCCCCCGACGAGATCACAGACCAATTGCTGCTTGCCCGAGGGAACCATGAACAATGTGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS TCA 72 bp | GCTGCACTGGTCTGTAGCCAGGCTGCAGGCCATCCATaGACGGAGGCACTGGCGTCATGGGCACAGAGTCAT | + |
|
Preference number: 6 (lower is better) Translates to: AALVCSQAAGHP*TEALASWAQSH Trigger: ATGACTCTGTGCCCATGACGCCAGTGCCTCCGTTCATGGATGGCCTGCAGCCTGGCTACAGACCAGTGCAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 72 bp | TGGCAGCGGTGCTGGACTGACGAGAGGATGAGCCCCTaGAAGTGCTGGCACTGGGAATCATGGGGATGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: WQRCWTDERMSP*KCWHWESWGWS Trigger: AGACCATCCCCATGATTCCCAGTGCCAGCACTTCCAGGGGCTCATCCTCTCGTCAGTCCAGCACCGCTGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CAA 72 bp | TACACATTGTTCATGGTTCCCTCGGGCAAGCAGCAATaGGTCTGTGATCTCGTCGGGGGAGCCCGGGCCCCC | + |
|
Preference number: 6 (lower is better) Translates to: YTLFMVPSGKQQ*VCDLVGGARAP Trigger: GGGGGCCCGGGCTCCCCCGACGAGATCACAGACCAATTGCTGCTTGCCCGAGGGAACCATGAACAATGTGTA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS GCA 72 bp | CGGTGCTGGACTGACGAGAGGATGAGCCCCTGGAAGTaGTGGCACTGGGAATCATGGGGATGGTCTCCATCA | + |
|
Preference number: 6 (lower is better) Translates to: RCWTDERMSPWK*WHWESWGWSPS Trigger: TGATGGAGACCATCCCCATGATTCCCAGTGCCAGCACTTCCAGGGGCTCATCCTCTCGTCAGTCCAGCACCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 72 bp | ACTGACGAGAGGATGAGCCCCTGGAAGTGCTGGCACTaGGAATCATGGGGATGGTCTCCATCAGGCGGTTGG | + |
|
Preference number: 6 (lower is better) Translates to: TDERMSPWKCWH*ESWGWSPSGGW Trigger: CCAACCGCCTGATGGAGACCATCCCCATGATTCCCAGTGCCAGCACTTCCAGGGGCTCATCCTCTCGTCAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 72 bp | GTAGCCAGGCTGCAGGCCATCCATGAACGGAGGCACTaGCGTCATGGGCACAGAGTCATGCTGTACGGCATA | + |
|
Preference number: 6 (lower is better) Translates to: VARLQAIHERRH*RHGHRVMLYGI Trigger: TATGCCGTACAGCATGACTCTGTGCCCATGACGCCAGTGCCTCCGTTCATGGATGGCCTGCAGCCTGGCTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CAA 90 bp | ATGTTGACATACACATTGTTCATGGTTCCCTCGGGCAAGCAGCAATaGGTCTGTGATCTCGTCGGGGGAGCCCGGGCCCCCGAGTTCGCA | + |
|
Preference number: 6 (lower is better) Translates to: MLTYTLFMVPSGKQQ*VCDLVGGARAPEFA Trigger: TGCGAACTCGGGGGCCCGGGCTCCCCCGACGAGATCACAGACCAATTGCTGCTTGCCCGAGGGAACCATGAACAATGTGTATGTCAACAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CAA 72 bp | GGCATAGCCTACATATGGAGTATGCAGGTACTGCCCTaGGTGGGGTACGATCTGGGTGGCCTGCTGACAGTT | + |
|
Preference number: 6 (lower is better) Translates to: GIAYIWSMQVLP*VGYDLGGLLTV Trigger: AACTGTCAGCAGGCCACCCAGATCGTACCCCACCAAGGGCAGTACCTGCATACTCCATATGTAGGCTATGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CCA 72 bp | GGGCACAGAGTCATGCTGTACGGCATAGCCTACATATaGAGTATGCAGGTACTGCCCTTGGTGGGGTACGAT | + |
|
Preference number: 6 (lower is better) Translates to: GHRVMLYGIAYI*SMQVLPLVGYD Trigger: ATCGTACCCCACCAAGGGCAGTACCTGCATACTCCATATGTAGGCTATGCCGTACAGCATGACTCTGTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS TCA 72 bp | GGGTACGATCTGGGTGGCCTGCTGACAGTTGAGTACTaGGAAATTTGTGGGCATGTTGACATACACATTGTT | + |
|
Preference number: 6 (lower is better) Translates to: GYDLGGLLTVEY*EICGHVDIHIV Trigger: AACAATGTGTATGTCAACATGCCCACAAATTTCTCAGTACTCAACTGTCAGCAGGCCACCCAGATCGTACCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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| CDS CAA 72 bp | AGTACTGAGAAATTTGTGGGCATGTTGACATACACATaGTTCATGGTTCCCTCGGGCAAGCAGCAATTGGTC | + |
|
Preference number: 6 (lower is better) Translates to: STEKFVGMLTYT*FMVPSGKQQLV Trigger: GACCAATTGCTGCTTGCCCGAGGGAACCATGAACAATGTGTATGTCAACATGCCCACAAATTTCTCAGTACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053949.7 |
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