Pregenerated sensors for SHFL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038884Ensembl transcript IDs: ENSMUST00000043911.8
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAAAGTGAGAAGCCAGAGCCTTTTATTTCGGTGAAGAGATGGAGTAGCAGGGCTCATCGTGGGGGCTGGTaGTACCATGCCTGTGCCCAC | + |
|
Preference number: 2 (lower is better) Translates to: ESEKPEPFISVKRWSSRAHRGGW*YHACAH Trigger: GTGGGCACAGGCATGGTACCACCAGCCCCCACGATG...AGCCCTGCTACTCCATCTCTTCACCGAAATAAAAGGCTCTGGCTTCTCACTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| 3UTR-3UTR CCA 90 bp | GAAAGTGAGAAGCCAGAGCCTTTTATTTCGGTGAAGAGATGGAGTAGCAGGGCTAACCTCAATGGAGTATaGTATCATGGAGGTCATTAC | + |
|
Preference number: 2 (lower is better) Translates to: ESEKPEPFISVKRWSSRANLNGV*YHGGHY Trigger: GTAATGACCTCCATGATACCATACTCCATTGAGGTT...AGCCCTGCTACTCCATCTCTTCACCGAAATAAAAGGCTCTGGCTTCTCACTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| 3UTR TCA 72 bp | AAGAAAGCTGTTATGTTGACCCGGCTTGTGCGCTTGTaGCTGTCCCATCAGTACCCCCAAGGGTGTTCCTAT | + |
|
Preference number: 3 (lower is better) Translates to: KKAVMLTRLVRL*LSHQYPQGCSY Trigger: ATAGGAACACCCTTGGGGGTACTGATGGGACAGTCACAAGCGCACAAGCCGGGTCAACATAACAGCTTTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| 3UTR CCA 72 bp | TATCTCCTTCAGCTGGTATCTTATAGCAACACGAGGTaGCCACACACTGTGTCTGTCTTCCTGTGTGCACCT | + |
|
Preference number: 3 (lower is better) Translates to: YLLQLVSYSNTR*PHTVSVFLCAP Trigger: AGGTGCACACAGGAAGACAGACACAGTGTGTGGCCACCTCGTGTTGCTATAAGATACCAGCTGAAGGAGATA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| 3UTR-3UTR CAA 90 bp | GAAAGTGAGAAGCCAGAGCCTTTTATTTCGGTGAAGAGATGGAGTAGCAGGGCTAAGAAAGCTGTTATGTaGACCCGGCTTGTGCGCTTG | + |
|
Preference number: 3 (lower is better) Translates to: ESEKPEPFISVKRWSSRAKKAVM*TRLVRL Trigger: CAAGCGCACAAGCCGGGTCAACATAACAGCTTTCTT...AGCCCTGCTACTCCATCTCTTCACCGAAATAAAAGGCTCTGGCTTCTCACTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| 3UTR TCA 72 bp | AAGAAGAAAGTGAGAAGCCAGAGCCTTTTATTTCGGTaGAGAGATGGAGTAGCAGGGCTTCTATTCAATAAG | + |
|
Preference number: 3 (lower is better) Translates to: KKKVRSQSLLFR*RDGVAGLLFNK Trigger: CTTATTGAATAGAAGCCCTGCTACTCCATCTCTTCACCGAAATAAAAGGCTCTGGCTTCTCACTTTCTTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | TGGGCCGAGTTCCGTGGTGGGGCGTACTCTCTGAAGAAAGCTGTTATGTTGACCCTTGGCTCAGGCACGTaGCCACCGTGGAGCCGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: WAEFRGGAYSLKKAVMLTLGSGT*PPWSRC Trigger: GCAGCGGCTCCACGGTGGCCACGTGCCTGAGCCAAG...GGTCAACATAACAGCTTTCTTCAGAGAGTACGCCCCACCACGGAACTCGGCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | GCTTGTGACTGTCCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTTACGGCTCTTGGGGTaGGCGCAGGAGGTCCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: ACDCPISTPKGVPISFSWLRLLG*AQEVPG Trigger: GCCTGGGACCTCCTGCGCCCACCCCAAGAGCCGTAA...CCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGGACAGTCACAAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR TCA 90 bp | GCTTGTGACTGTCCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTCTCCCGGAGGCGCCTaGCGCTCTTCTCCAACTCCA | + |
|
Preference number: 4 (lower is better) Translates to: ACDCPISTPKGVPISFSWSPGGA*RSSPTP Trigger: TGGAGTTGGAGAAGAGCGTCAGGCGCCTCCGGGAGA...CCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGGACAGTCACAAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | CCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTATCTTATAGCAGTCACGGTCCCAGCGTaGGGGCAGGATCCGGGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: PISTPKGVPISFSWYLIAVTVPA*GQDPGG Trigger: CCCACCCGGATCCTGCCCCCACGCTGGGACCGTGAC...TGCTATAAGATACCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | GCTTGTGACTGTCCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGGCAGCTGAGCAGGAGTaGGTGTGTGTGCTGCGACGG | + |
|
Preference number: 4 (lower is better) Translates to: ACDCPISTPKGVPISFSWAAEQE*VCVLRR Trigger: CCGTCGCAGCACACACACCCACTCCTGCTCAGCTGC...CCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGGACAGTCACAAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | TCAATGGAGTATGGTATCATGGAGGTCATTACCGGAGCCGATACCAGGACGGGGTCCACGAGGCCTCCTTaGCTCAGGCACGTGGCCACC | + |
|
Preference number: 4 (lower is better) Translates to: SMEYGIMEVITGADTRTGSTRPP*LRHVAT Trigger: GGTGGCCACGTGCCTGAGCCAAGGAGGCCTCGTGGA...CCCCGTCCTGGTATCGGCTCCGGTAATGACCTCCATGATACCATACTCCATTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR GCA 90 bp | TCAATGGAGTATGGTATCATGGAGGTCATTACCGGAGCCGATACCAGGACGGGGTGGGGGTTGCTCGGGTaGAGCACTTTGGGGAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: SMEYGIMEVITGADTRTGWGLLG*STLGRW Trigger: CCACCTCCCCAAAGTGCTGCACCCGAGCAACCCCCA...CCCCGTCCTGGTATCGGCTCCGGTAATGACCTCCATGATACCATACTCCATTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | TGGGCCGAGTTCCGTGGTGGGGCGTACTCTCTGAAGAAAGCTGTTATGTTGACCCAGCCCCGGAAGTTGTaGCGACACTTTGGGCAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: WAEFRGGAYSLKKAVMLTQPRKL*RHFGQW Trigger: CCACTGCCCAAAGTGTCGCCACAACTTCCGGGGCTG...GGTCAACATAACAGCTTTCTTCAGAGAGTACGCCCCACCACGGAACTCGGCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR TCA 90 bp | TGGTATCTTATAGCAACACGAGGTGGCCACACACTGTGTCTGTCTTCCTGTGTGGCACCCGTAGCAGGGTaGTGGGGACCCCATCTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: WYLIATRGGHTLCLSSCVAPVAG*WGPHLC Trigger: GCACAGATGGGGTCCCCATCACCCTGCTACGGGTGC...CACACAGGAAGACAGACACAGTGTGTGGCCACCTCGTGTTGCTATAAGATACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR GCA 90 bp | TCAATGGAGTATGGTATCATGGAGGTCATTACCGGAGCCGATACCAGGACGGGGTGGGCAGTGGAACTCTaGCAGGCCCCACATCTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: SMEYGIMEVITGADTRTGWAVEL*QAPHLV Trigger: GACAAGATGTGGGGCCTGGCAGAGTTCCACTGCCCA...CCCCGTCCTGGTATCGGCTCCGGTAATGACCTCCATGATACCATACTCCATTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR GCA 90 bp | GACTGTCCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTATCTTAGGAGTGGGTGTGTGTaGTGCGACGGTCCAGGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: DCPISTPKGVPISFSWYLRSGCV*CDGPGH Trigger: GTGACCTGGACCGTCGCAGCACACACACCCACTCCT...AAGATACCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGGACAGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | GACTGTCCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTATCTTCGGCGCCACCATACATaGTCACAGGAGGAGCAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: DCPISTPKGVPISFSWYLRRHHT*SQEEQA Trigger: TGCCTGCTCCTCCTGTGACCATGTATGGTGGCGCCG...AAGATACCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGGACAGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | TGGGCCGAGTTCCGTGGTGGGGCGTACTCTCTGAAGAAAGCTGTTATGTTGACCAGCACTTTGGGGAGGTaGTTCTGCTTACGGCTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: WAEFRGGAYSLKKAVMLTSTLGR*FCLRLL Trigger: CAAGAGCCGTAAGCAGAACCACCTCCCCAAAGTGCT...GGTCAACATAACAGCTTTCTTCAGAGAGTACGCCCCACCACGGAACTCGGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR GCA 90 bp | CTGGTATCTTATAGCAACACGAGGTGGCCACACACTGTGTCTGTCTTCCTGTGTTTGGGGAGGTGGTTCTaGTTACGGCTCTTGGGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: LVSYSNTRWPHTVSVFLCLGRWF*LRLLGW Trigger: CCACCCCAAGAGCCGTAAGCAGAACCACCTCCCCAA...ACACAGGAAGACAGACACAGTGTGTGGCCACCTCGTGTTGCTATAAGATACCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | CTGGTATCTTATAGCAACACGAGGTGGCCACACACTGTGTCTGTCTTCCTGTGTGACACCTCTTTCCTCTaGGGTACACGGCGCCACCAT | + |
|
Preference number: 4 (lower is better) Translates to: LVSYSNTRWPHTVSVFLCDTSFL*GTRRHH Trigger: ATGGTGGCGCCGTGTACCCCAGAGGAAAGAGGTGTC...ACACAGGAAGACAGACACAGTGTGTGGCCACCTCGTGTTGCTATAAGATACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | CCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTATCTTATAGCATTGCTTCATGTCCTCTaGTGGGTCCTGAGCGTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: PISTPKGVPISFSWYLIALLHVL*WVLSVQ Trigger: CTGGACGCTCAGGACCCACCAGAGGACATGAAGCAA...TGCTATAAGATACCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | CTGGTATCTTATAGCAACACGAGGTGGCCACACACTGTGTCTGTCTTCCTGTGTGTTGTGGCGACACTTTaGGCAGTGGAACTCTGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LVSYSNTRWPHTVSVFLCVVATL*AVELCQ Trigger: CTGGCAGAGTTCCACTGCCCAAAGTGTCGCCACAAC...ACACAGGAAGACAGACACAGTGTGTGGCCACCTCGTGTTGCTATAAGATACCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | GCTTGTGACTGTCCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGACTGCCTGGATATCTTaGTCTTGCTTCATGTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: ACDCPISTPKGVPISFSWTAWIS*SCFMSS Trigger: AGAGGACATGAAGCAAGACCAAGATATCCAGGCAGT...CCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGGACAGTCACAAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | GACTGTCCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTATCTTGAGGTGGCTACTGCCTaGATATCTTGGTCTTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: DCPISTPKGVPISFSWYLEVATA*ISWSCF Trigger: GAAGCAAGACCAAGATATCCAGGCAGTAGCCACCTC...AAGATACCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGGACAGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | GAAAGTGAGAAGCCAGAGCCTTTTATTTCGGTGAAGAGATGGAGTAGCAGGGCTTCGGGTGCAGCACTTTaGGGAGGTGGTTCTGCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: ESEKPEPFISVKRWSSRASGAAL*GGGSAY Trigger: GTAAGCAGAACCACCTCCCCAAAGTGCTGCACCCGA...AGCCCTGCTACTCCATCTCTTCACCGAAATAAAAGGCTCTGGCTTCTCACTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR GCA 90 bp | CCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTATCTTATAGCATGGATATCTTGGTCTTaGTTCATGTCCTCTGGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: PISTPKGVPISFSWYLIAWISWS*FMSSGG Trigger: CCCACCAGAGGACATGAAGCAAGACCAAGATATCCA...TGCTATAAGATACCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | CCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTATCTTATAGCACCACATCTTGTCAAGTaGCACTGGTTCGTAACGCTT | + |
|
Preference number: 4 (lower is better) Translates to: PISTPKGVPISFSWYLIAPHLVK*HWFVTL Trigger: AAGCGTTACGAACCAGTGCCACTTGACAAGATGTGG...TGCTATAAGATACCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CCA 90 bp | CTGGTATCTTATAGCAACACGAGGTGGCCACACACTGTGTCTGTCTTCCTGTGTTCATCTTGGGCTCTTTaGAACATTCGAAGATTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: LVSYSNTRWPHTVSVFLCSSWAL*NIRRLA Trigger: AGCCAATCTTCGAATGTTCCAAAGAGCCCAAGATGA...ACACAGGAAGACAGACACAGTGTGTGGCCACCTCGTGTTGCTATAAGATACCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 90 bp | TGCGACGGTCCAGGTCACGGTCCCAGCGTGGGGGCAGGATCCGGGTaGGGTACACAGGGAAGCCGCACCCGTAGCAGGGTGATGGGGACC | + |
|
Preference number: 5 (lower is better) Translates to: CDGPGHGPSVGAGSG*GTQGSRTRSRVMGT Trigger: GGTCCCCATCACCCTGCTACGGGTGCGGCTTCCCTGTGTACCCCACCCGGATCCTGCCCCCACGCTGGGACCGTGACCTGGACCGTCGCA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 90 bp | GGAGTGGGTGTGTGTGCTGCGACGGTCCAGGTCACGGTCCCAGCGTaGGGGCAGGATCCGGGTGGGGTACACAGGGAAGCCGCACCCGTA | + |
|
Preference number: 5 (lower is better) Translates to: GVGVCAATVQVTVPA*GQDPGGVHREAAPV Trigger: TACGGGTGCGGCTTCCCTGTGTACCCCACCCGGATCCTGCCCCCACGCTGGGACCGTGACCTGGACCGTCGCAGCACACACACCCACTCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS TCA 90 bp | CGAGGCCTCCTTGGCTCAGGCACGTGGCCACCGTGGAGCCGCTGCTaGTGTGGGGGTTGCTCGGGTGCAGCACTTTGGGGAGGTGGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: RGLLGSGTWPPWSRC*CGGCSGAALWGGGS Trigger: AGAACCACCTCCCCAAAGTGCTGCACCCGAGCAACCCCCACATCAGCAGCGGCTCCACGGTGGCCACGTGCCTGAGCCAAGGAGGCCTCG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 90 bp | TGCTCGGGTGCAGCACTTTGGGGAGGTGGTTCTGCTTACGGCTCTTaGGGTGGGCGCAGGAGGTCCCAGGCACATGGGGCTCTCTCCGAT | + |
|
Preference number: 5 (lower is better) Translates to: CSGAALWGGGSAYGS*GGRRRSQAHGALSD Trigger: ATCGGAGAGAGCCCCATGTGCCTGGGACCTCCTGCGCCCACCCCAAGAGCCGTAAGCAGAACCACCTCCCCAAAGTGCTGCACCCGAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 90 bp | CCTCCTTGGCTCAGGCACGTGGCCACCGTGGAGCCGCTGCTGATGTaGGGGTTGCTCGGGTGCAGCACTTTGGGGAGGTGGTTCTGCTTA | + |
|
Preference number: 5 (lower is better) Translates to: PPWLRHVATVEPLLM*GLLGCSTLGRWFCL Trigger: TAAGCAGAACCACCTCCCCAAAGTGCTGCACCCGAGCAACCCCCACATCAGCAGCGGCTCCACGGTGGCCACGTGCCTGAGCCAAGGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS TCA 90 bp | GGTCCCAGGCACATGGGGCTCTCTCCGATTGTAGCAATCTGCAGCTaGGCAGGAGTGGGTGTGTGTGCTGCGACGGTCCAGGTCACGGTC | + |
|
Preference number: 5 (lower is better) Translates to: GPRHMGLSPIVAICS*AGVGVCAATVQVTV Trigger: GACCGTGACCTGGACCGTCGCAGCACACACACCCACTCCTGCTCAGCTGCAGATTGCTACAATCGGAGAGAGCCCCATGTGCCTGGGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 90 bp | CACCGTGACACCTCTTTCCTCTGGGGTACACGGCGCCACCATACATaGTCACAGGAGGAGCAGGCAAACTGTCGGTCCACGGCAGGGATG | + |
|
Preference number: 5 (lower is better) Translates to: HRDTSFLWGTRRHHT*SQEEQANCRSTAGM Trigger: CATCCCTGCCGTGGACCGACAGTTTGCCTGCTCCTCCTGTGACCATGTATGGTGGCGCCGTGTACCCCAGAGGAAAGAGGTGTCACGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 90 bp | CCCATCTGTGCCCAGCCCCGGAAGTTGTGGCGACACTTTGGGCAGTaGAACTCTGCCAGGCCCCACATCTTGTCAAGTGGCACTGGTTCG | + |
|
Preference number: 5 (lower is better) Translates to: PICAQPRKLWRHFGQ*NSARPHILSSGTGS Trigger: CGAACCAGTGCCACTTGACAAGATGTGGGGCCTGGCAGAGTTCCACTGCCCAAAGTGTCGCCACAACTTCCGGGGCTGGGCACAGATGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CAA 90 bp | TGGGCCGAGTTCCGTGGTGGGGCGTACTCTCTGAAGAAAGCTGTTATGTTGACCATCCACGAGGCCTCCTaGGCTCAGGCACGTGGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: WAEFRGGAYSLKKAVMLTIHEAS*AQARGH Trigger: GTGGCCACGTGCCTGAGCCAAGGAGGCCTCGTGGAT...GGTCAACATAACAGCTTTCTTCAGAGAGTACGCCCCACCACGGAACTCGGCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS GCA 90 bp | CCCAACTCCGGTGTGGTCGCTGCCAAACTTCCTCATAAGAGCCCCTaGCTTCTTGGGGGACACTTTCCCATGAAACTTCTCCCGGAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: PNSGVVAAKLPHKSP*LLGGHFPMKLLPEA Trigger: CGCCTCCGGGAGAAGTTTCATGGGAAAGTGTCCCCCAAGAAGGCAGGGGCTCTTATGAGGAAGTTTGGCAGCGACCACACCGGAGTTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS GCA 90 bp | TGCCCAGCCCCGGAAGTTGTGGCGACACTTTGGGCAGTGGAACTCTaGCAGGCCCCACATCTTGTCAAGTGGCACTGGTTCGTAACGCTT | + |
|
Preference number: 5 (lower is better) Translates to: CPAPEVVATLWAVEL*QAPHLVKWHWFVTL Trigger: AAGCGTTACGAACCAGTGCCACTTGACAAGATGTGGGGCCTGGCAGAGTTCCACTGCCCAAAGTGTCGCCACAACTTCCGGGGCTGGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS GCA 90 bp | CCCACATCTTGTCAAGTGGCACTGGTTCGTAACGCTTCCTACACTTaGGACACCGTGACACCTCTTTCCTCTGGGGTACACGGCGCCACC | + |
|
Preference number: 5 (lower is better) Translates to: PTSCQVALVRNASYT*DTVTPLSSGVHGAT Trigger: GGTGGCGCCGTGTACCCCAGAGGAAAGAGGTGTCACGGTGTCGCAAGTGTAGGAAGCGTTACGAACCAGTGCCACTTGACAAGATGTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS TCA 90 bp | GTCAAGTGGCACTGGTTCGTAACGCTTCCTACACTTGCGACACCGTaGCACCTCTTTCCTCTGGGGTACACGGCGCCACCATACATGGTC | + |
|
Preference number: 5 (lower is better) Translates to: VKWHWFVTLPTLATP*HLFPLGYTAPPYMV Trigger: GACCATGTATGGTGGCGCCGTGTACCCCAGAGGAAAGAGGTGTCACGGTGTCGCAAGTGTAGGAAGCGTTACGAACCAGTGCCACTTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 90 bp | GAGGAGCAGGCAAACTGTCGGTCCACGGCAGGGATGAGGTCATCTTaGGCTCTTTGGAACATTCGAAGATTGGCTTGCGTCAGGGGCAAC | + |
|
Preference number: 5 (lower is better) Translates to: EEQANCRSTAGMRSS*ALWNIRRLACVRGN Trigger: GTTGCCCCTGACGCAAGCCAATCTTCGAATGTTCCAAAGAGCCCAAGATGACCTCATCCCTGCCGTGGACCGACAGTTTGCCTGCTCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS TCA 90 bp | CATGGTCACAGGAGGAGCAGGCAAACTGTCGGTCCACGGCAGGGATaGGGTCATCTTGGGCTCTTTGGAACATTCGAAGATTGGCTTGCG | + |
|
Preference number: 5 (lower is better) Translates to: HGHRRSRQTVGPRQG*GHLGLFGTFEDWLA Trigger: CGCAAGCCAATCTTCGAATGTTCCAAAGAGCCCAAGATGACCTCATCCCTGCCGTGGACCGACAGTTTGCCTGCTCCTCCTGTGACCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CAA 90 bp | TGGGCCGAGTTCCGTGGTGGGGCGTACTCTCTGAAGAAAGCTGTTATGTTGACCAGTTGTGGCGACACTTaGGGCAGTGGAACTCTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: WAEFRGGAYSLKKAVMLTSCGDT*GSGTLP Trigger: TGGCAGAGTTCCACTGCCCAAAGTGTCGCCACAACT...GGTCAACATAACAGCTTTCTTCAGAGAGTACGCCCCACCACGGAACTCGGCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS GCA 90 bp | CATTCGAAGATTGGCTTGCGTCAGGGGCAACAGAGAGGTGGCTACTaGCTGGATATCTTGGTCTTGCTTCATGTCCTCTGGTGGGTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: HSKIGLRQGQQRGGY*LDILVLLHVLWWVL Trigger: CAGGACCCACCAGAGGACATGAAGCAAGACCAAGATATCCAGGCAGTAGCCACCTCTCTGTTGCCCCTGACGCAAGCCAATCTTCGAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CAA 90 bp | TGGGCCGAGTTCCGTGGTGGGGCGTACTCTCTGAAGAAAGCTGTTATGTTGACCTGGAACATTCGAAGATaGGCTTGCGTCAGGGGCAAC | + |
|
Preference number: 5 (lower is better) Translates to: WAEFRGGAYSLKKAVMLTWNIRR*ACVRGN Trigger: GTTGCCCCTGACGCAAGCCAATCTTCGAATGTTCCA...GGTCAACATAACAGCTTTCTTCAGAGAGTACGCCCCACCACGGAACTCGGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CAA 90 bp | CCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTATCTTATAGCAGCCAGGCCCCACATCTaGTCAAGTGGCACTGGTTCG | + |
|
Preference number: 5 (lower is better) Translates to: PISTPKGVPISFSWYLIAARPHI*SSGTGS Trigger: CGAACCAGTGCCACTTGACAAGATGTGGGGCCTGGC...TGCTATAAGATACCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CAA 90 bp | TGGTATCTTATAGCAACACGAGGTGGCCACACACTGTGTCTGTCTTCCTGTGTGCTGCTGATGTGGGGGTaGCTCGGGTGCAGCACTTTG | + |
|
Preference number: 5 (lower is better) Translates to: WYLIATRGGHTLCLSSCVLLMWG*LGCSTL Trigger: CAAAGTGCTGCACCCGAGCAACCCCCACATCAGCAG...CACACAGGAAGACAGACACAGTGTGTGGCCACCTCGTGTTGCTATAAGATACCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CAA 90 bp | TCAATGGAGTATGGTATCATGGAGGTCATTACCGGAGCCGATACCAGGACGGGGAGGGATGAGGTCATCTaGGGCTCTTTGGAACATTCG | + |
|
Preference number: 5 (lower is better) Translates to: SMEYGIMEVITGADTRTGRDEVI*GSLEHS Trigger: CGAATGTTCCAAAGAGCCCAAGATGACCTCATCCCT...CCCCGTCCTGGTATCGGCTCCGGTAATGACCTCCATGATACCATACTCCATTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CAA 90 bp | GACTGTCCCATCAGTACCCCCAAGGGTGTTCCTATCTCCTTCAGCTGGTATCTTTGTCCGTCTTTCTGCTaGACACCATACACGATAGAG | + |
|
Preference number: 5 (lower is better) Translates to: DCPISTPKGVPISFSWYLCPSFC*TPYTIE Trigger: CTCTATCGTGTATGGTGTCAAGCAGAAAGACGGACA...AAGATACCAGCTGAAGGAGATAGGAACACCCTTGGGGGTACTGATGGGACAGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS-3UTR CAA 90 bp | GAAAGTGAGAAGCCAGAGCCTTTTATTTCGGTGAAGAGATGGAGTAGCAGGGCTCTGGATATCTTGGTCTaGCTTCATGTCCTCTGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: ESEKPEPFISVKRWSSRALDILV*LHVLWW Trigger: CCACCAGAGGACATGAAGCAAGACCAAGATATCCAG...AGCCCTGCTACTCCATCTCTTCACCGAAATAAAAGGCTCTGGCTTCTCACTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | CCAGGTCACGGTCCCAGCGTGGGGGCAGGATCCGGGTaGGGTACACAGGGAAGCCGCACCCGTAGCAGGGTG | + |
|
Preference number: 6 (lower is better) Translates to: PGHGPSVGAGSG*GTQGSRTRSRV Trigger: CACCCTGCTACGGGTGCGGCTTCCCTGTGTACCCCACCCGGATCCTGCCCCCACGCTGGGACCGTGACCTGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | GTGTGTGCTGCGACGGTCCAGGTCACGGTCCCAGCGTaGGGGCAGGATCCGGGTGGGGTACACAGGGAAGCC | + |
|
Preference number: 6 (lower is better) Translates to: VCAATVQVTVPA*GQDPGGVHREA Trigger: GGCTTCCCTGTGTACCCCACCCGGATCCTGCCCCCACGCTGGGACCGTGACCTGGACCGTCGCAGCACACAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | CTCAGGCACGTGGCCACCGTGGAGCCGCTGCTGATGTaGGGGTTGCTCGGGTGCAGCACTTTGGGGAGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: LRHVATVEPLLM*GLLGCSTLGRW Trigger: CCACCTCCCCAAAGTGCTGCACCCGAGCAACCCCCACATCAGCAGCGGCTCCACGGTGGCCACGTGCCTGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS TCA 72 bp | CTTGGCTCAGGCACGTGGCCACCGTGGAGCCGCTGCTaGTGTGGGGGTTGCTCGGGTGCAGCACTTTGGGGA | + |
|
Preference number: 6 (lower is better) Translates to: LGSGTWPPWSRC*CGGCSGAALWG Trigger: TCCCCAAAGTGCTGCACCCGAGCAACCCCCACATCAGCAGCGGCTCCACGGTGGCCACGTGCCTGAGCCAAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CAA 72 bp | CAGGATGAGGTGGTCCAGGTCATCCACGAGGCCTCCTaGGCTCAGGCACGTGGCCACCGTGGAGCCGCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: QDEVVQVIHEAS*AQARGHRGAAA Trigger: AGCAGCGGCTCCACGGTGGCCACGTGCCTGAGCCAAGGAGGCCTCGTGGATGACCTGGACCACCTCATCCTG 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CAA 90 bp | TGGCTCAGGCACGTGGCCACCGTGGAGCCGCTGCTGATGTGGGGGTaGCTCGGGTGCAGCACTTTGGGGAGGTGGTTCTGCTTACGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: WLRHVATVEPLLMWG*LGCSTLGRWFCLRL Trigger: GAGCCGTAAGCAGAACCACCTCCCCAAAGTGCTGCACCCGAGCAACCCCCACATCAGCAGCGGCTCCACGGTGGCCACGTGCCTGAGCCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS GCA 72 bp | ACCGTGGAGCCGCTGCTGATGTGGGGGTTGCTCGGGTaGAGCACTTTGGGGAGGTGGTTCTGCTTACGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: TVEPLLMWGLLG*STLGRWFCLRL Trigger: GAGCCGTAAGCAGAACCACCTCCCCAAAGTGCTGCACCCGAGCAACCCCCACATCAGCAGCGGCTCCACGGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | GCCCAGCCCCGGAAGTTGTGGCGACACTTTGGGCAGTaGAACTCTGCCAGGCCCCACATCTTGTCAAGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: AQPRKLWRHFGQ*NSARPHILSSG Trigger: GCCACTTGACAAGATGTGGGGCCTGGCAGAGTTCCACTGCCCAAAGTGTCGCCACAACTTCCGGGGCTGGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | CATCTGTGCCCAGCCCCGGAAGTTGTGGCGACACTTTaGGCAGTGGAACTCTGCCAGGCCCCACATCTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: HLCPAPEVVATL*AVELCQAPHLV Trigger: GACAAGATGTGGGGCCTGGCAGAGTTCCACTGCCCAAAGTGTCGCCACAACTTCCGGGGCTGGGCACAGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CAA 72 bp | CCATCTGTGCCCAGCCCCGGAAGTTGTGGCGACACTTaGGGCAGTGGAACTCTGCCAGGCCCCACATCTTGT | + |
|
Preference number: 6 (lower is better) Translates to: PSVPSPGSCGDT*GSGTLPGPTSC Trigger: ACAAGATGTGGGGCCTGGCAGAGTTCCACTGCCCAAAGTGTCGCCACAACTTCCGGGGCTGGGCACAGATGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS TCA 72 bp | GGGACACTTTCCCATGAAACTTCTCCCGGAGGCGCCTaGCGCTCTTCTCCAACTCCACGCCATCCTGAGCCA | + |
|
Preference number: 6 (lower is better) Translates to: GTLSHETSPGGA*RSSPTPRHPEP Trigger: TGGCTCAGGATGGCGTGGAGTTGGAGAAGAGCGTCAGGCGCCTCCGGGAGAAGTTTCATGGGAAAGTGTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | ACCTCTTTCCTCTGGGGTACACGGCGCCACCATACATaGTCACAGGAGGAGCAGGCAAACTGTCGGTCCACG | + |
|
Preference number: 6 (lower is better) Translates to: TSFLWGTRRHHT*SQEEQANCRST Trigger: CGTGGACCGACAGTTTGCCTGCTCCTCCTGTGACCATGTATGGTGGCGCCGTGTACCCCAGAGGAAAGAGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS GCA 72 bp | CCGGAAGTTGTGGCGACACTTTGGGCAGTGGAACTCTaGCAGGCCCCACATCTTGTCAAGTGGCACTGGTTC | + |
|
Preference number: 6 (lower is better) Translates to: PEVVATLWAVEL*QAPHLVKWHWF Trigger: GAACCAGTGCCACTTGACAAGATGTGGGGCCTGGCAGAGTTCCACTGCCCAAAGTGTCGCCACAACTTCCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CAA 90 bp | GGAGGAGCAGGCAAACTGTCGGTCCACGGCAGGGATGAGGTCATCTaGGGCTCTTTGGAACATTCGAAGATTGGCTTGCGTCAGGGGCAA | + |
|
Preference number: 6 (lower is better) Translates to: GGAGKLSVHGRDEVI*GSLEHSKIGLRQGQ Trigger: TTGCCCCTGACGCAAGCCAATCTTCGAATGTTCCAAAGAGCCCAAGATGACCTCATCCCTGCCGTGGACCGACAGTTTGCCTGCTCCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | TGCCTGGATATCTTGGTCTTGCTTCATGTCCTCTGGTaGGTCCTGAGCGTCCAGGTCGTTGCTCAGCTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: CLDILVLLHVLW*VLSVQVVAQLL Trigger: CAGGAGCTGAGCAACGACCTGGACGCTCAGGACCCACCAGAGGACATGAAGCAAGACCAAGATATCCAGGCA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | GCTTGCGTCAGGGGCAACAGAGAGGTGGCTACTGCCTaGATATCTTGGTCTTGCTTCATGTCCTCTGGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: ACVRGNREVATA*ISWSCFMSSGG Trigger: CCCACCAGAGGACATGAAGCAAGACCAAGATATCCAGGCAGTAGCCACCTCTCTGTTGCCCCTGACGCAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | TTCCTACACTTGCGACACCGTGACACCTCTTTCCTCTaGGGTACACGGCGCCACCATACATGGTCACAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: FLHLRHRDTSFL*GTRRHHTWSQE Trigger: CTCCTGTGACCATGTATGGTGGCGCCGTGTACCCCAGAGGAAAGAGGTGTCACGGTGTCGCAAGTGTAGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | GCAGTGGAACTCTGCCAGGCCCCACATCTTGTCAAGTaGCACTGGTTCGTAACGCTTCCTACACTTGCGACA | + |
|
Preference number: 6 (lower is better) Translates to: AVELCQAPHLVK*HWFVTLPTLAT Trigger: TGTCGCAAGTGTAGGAAGCGTTACGAACCAGTGCCACTTGACAAGATGTGGGGCCTGGCAGAGTTCCACTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CAA 72 bp | CAACAGAGAGGTGGCTACTGCCTGGATATCTTGGTCTaGCTTCATGTCCTCTGGTGGGTCCTGAGCGTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: QQRGGYCLDILV*LHVLWWVLSVQ Trigger: CTGGACGCTCAGGACCCACCAGAGGACATGAAGCAAGACCAAGATATCCAGGCAGTAGCCACCTCTCTGTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS TCA 72 bp | AGGAGGAGCAGGCAAACTGTCGGTCCACGGCAGGGATaGGGTCATCTTGGGCTCTTTGGAACATTCGAAGAT | + |
|
Preference number: 6 (lower is better) Translates to: RRSRQTVGPRQG*GHLGLFGTFED Trigger: ATCTTCGAATGTTCCAAAGAGCCCAAGATGACCTCATCCCTGCCGTGGACCGACAGTTTGCCTGCTCCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS GCA 72 bp | GGTGTGGTCGCTGCCAAACTTCCTCATAAGAGCCCCTaGCTTCTTGGGGGACACTTTCCCATGAAACTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: GVVAAKLPHKSP*LLGGHFPMKLL Trigger: GAGAAGTTTCATGGGAAAGTGTCCCCCAAGAAGGCAGGGGCTCTTATGAGGAAGTTTGGCAGCGACCACACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||
| CDS CCA 72 bp | GCAAACTGTCGGTCCACGGCAGGGATGAGGTCATCTTaGGCTCTTTGGAACATTCGAAGATTGGCTTGCGTC | + |
|
Preference number: 6 (lower is better) Translates to: ANCRSTAGMRSS*ALWNIRRLACV Trigger: GACGCAAGCCAATCTTCGAATGTTCCAAAGAGCCCAAGATGACCTCATCCCTGCCGTGGACCGACAGTTTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043911.8 |
||