Pregenerated sensors for SHD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039154Ensembl transcript IDs: ENSMUST00000044216.8, ENSMUST00000223629.2, ENSMUST00000225145.2
Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGGATCAGGAGTTCAAACTCATTGTAGCTAGTTTTAGGTCAGCCTaGGCAATGTTGGACCAGGTCTCACACAAACCAAAAACAACACCT | + |
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Preference number: 1 (lower is better) Translates to: EDQEFKLIVASFRSA*AMLDQVSHKPKTTP Trigger: AGGTGTTGTTTTTGGTTTGTGTGAGACCTGGTCCAACATTGCCCAGGCTGACCTAAAACTAGCTACAATGAGTTTGAACTCCTGATCCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225145.2 |
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| 3UTR CAA 90 bp | AGAACGACTTGCAGCTCTCGGCTGCCACCGTGTGGATTCCCAGGGTaGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCA | + |
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Preference number: 2 (lower is better) Translates to: RTTCSSRLPPCGFPG*SPAGLAAAAFLHLS Trigger: TGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGGTGGCAGCCGAGAGCTGCAAGTCGTTCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCAGGAGGATCAGGAGTTCAAACTCATTGTAGCTAGTTTTAGGTCAGCCTGGTACCCTCTGTCTCCCTaGAGGGAGAATGGGCCGAGG | + |
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Preference number: 2 (lower is better) Translates to: QQEDQEFKLIVASFRSAWYPLSP*RENGPR Trigger: CCTCGGCCCATTCTCCCTTCAGGGAGACAGAGGGTA...CCAGGCTGACCTAAAACTAGCTACAATGAGTTTGAACTCCTGATCCTCCTGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225145.2 |
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| 3UTR CAA 90 bp | GAGTTCAAACTCATTGTAGCTAGTTTTAGGTCAGCCTGGGCAATGTaGGACCAGGTCTCACACAAACCAAAAACAACACCTACCCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: EFKLIVASFRSAWAM*DQVSHKPKTTPTLC Trigger: ACAGAGGGTAGGTGTTGTTTTTGGTTTGTGTGAGACCTGGTCCAACATTGCCCAGGCTGACCTAAAACTAGCTACAATGAGTTTGAACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225145.2 |
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| 3UTR CCA 72 bp | TCAGAGAACGACTTGCAGCTCTCGGCTGCCACCGTGTaGATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGC | + |
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Preference number: 3 (lower is better) Translates to: SENDLQLSAATV*IPRVEPSRPGG Trigger: GCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGGTGGCAGCCGAGAGCTGCAAGTCGTTCTCTGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| 3UTR GCA 72 bp | TCCATCAGGCACAGCATAAACAGTGACTGTGACACATaGCTGTCATCCTGTGACACACACTTCAGAAGTACA | + |
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Preference number: 3 (lower is better) Translates to: SIRHSINSDCDT*LSSCDTHFRST Trigger: TGTACTTCTGAAGTGTGTGTCACAGGATGACAGGCATGTGTCACAGTCACTGTTTATGCTGTGCCTGATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225145.2 |
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| CDS-3UTR GCA 90 bp | CCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCGTTTCTGCTTCCGGCTaGTCTTCCCCCGGGCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: PAGLAAAAFLHLSSMPAGVSASG*SSPGLP Trigger: GGGGAGCCCGGGGGAAGAGCAGCCGGAAGCAGAAAC...GCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | AGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAAAGGTTCTCGGCCTCTaGTCGGCTCAGGGGGCCGTG | + |
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Preference number: 4 (lower is better) Translates to: SPAGLAAAAFLHLSSMPAKVLGL*SAQGAV Trigger: CACGGCCCCCTGAGCCGAGCAGAGGCCGAGAACCTT...TGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| 3UTR CAA 72 bp | TGCAGCTCTCGGCTGCCACCGTGTGGATTCCCAGGGTaGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: CSSRLPPCGFPG*SPAGLAAAAFL Trigger: AAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGGTGGCAGCCGAGAGCTGCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | CAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGGGGAAGGGCCCACTGTaGTGTCCCAGTACCACCTGG | + |
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Preference number: 4 (lower is better) Translates to: QAWRQPPFFTCQACPQAMGKGPL*CPSTTW Trigger: CCAGGTGGTACTGGGACAGCACAGTGGGCCCTTCCC...CATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | GCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGGACCAGCTCAGGTATaGTGGGGAAGGGCCCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: AQQAWRQPPFFTCQACPQGPAQV*WGRAHC Trigger: ACAGTGGGCCCTTCCCCAGCATACCTGAGCTGGTCC...CTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | CCACCGTGTGGATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTGGACCAGCTCAGGTATaGTGGGGAAGGGCCCACTGT | + |
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Preference number: 4 (lower is better) Translates to: PPCGFPGLSPAGLAAAAFGPAQV*WGRAHC Trigger: ACAGTGGGCCCTTCCCCAGCATACCTGAGCTGGTCC...AAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGGTGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | CCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCCAGCTCAGGTATGCTaGGGAAGGGCCCACTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: PAGLAAAAFLHLSSMPAGPAQVC*GRAHCA Trigger: AGCACAGTGGGCCCTTCCCCAGCATACCTGAGCTGG...GCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR TCA 90 bp | ATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCTTGGGGGCTGGTGGCTaGGGCTGGGCATCAAAAGGG | + |
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Preference number: 4 (lower is better) Translates to: IPRVEPSRPGGSRLSSPVLGAGG*GWASKG Trigger: CCCTTTTGATGCCCAGCCTCAGCCACCAGCCCCCAA...GACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAAT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR TCA 90 bp | CCACCGTGTGGATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTAATGTGCAGGGTCCTTaGGAGCTCTGGCTGCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: PPCGFPGLSPAGLAAAAFNVQGP*ELWLLV Trigger: CACCAGCAGCCAGAGCTCTCAAGGACCCTGCACATT...AAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGGTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | CCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGGGCTCTGGCCATGTCTaGAGCCTCCACCTTGATCAG | + |
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Preference number: 4 (lower is better) Translates to: PSRPGGSRLSSPVKHARRGSGHV*SLHLDQ Trigger: CTGATCAAGGTGGAGGCTGCAGACATGGCCAGAGCC...CCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | TGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGATCTGGAAGGTTCTCGGCCTCTaGTCGGCTCAGGGGGCCGTG | + |
|
Preference number: 4 (lower is better) Translates to: WRQPPFFTCQACPQAMIWKVLGL*SAQGAV Trigger: CACGGCCCCCTGAGCCGAGCAGAGGCCGAGAACCTT...CCAGATCATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | ATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCACGCTCCGCAGGCTGTaGTCTCCAGGGCTCCTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: IPRVEPSRPGGSRLSSPVTLRRL*SPGLLG Trigger: ACCAAGGAGCCCTGGAGACCACAGCCTGCGGAGCGT...GACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR TCA 90 bp | TGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGATCTGGTTGGGGGCTGGTGGCTaGGGCTGGGCATCAAAAGGG | + |
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Preference number: 4 (lower is better) Translates to: WRQPPFFTCQACPQAMIWLGAGG*GWASKG Trigger: CCCTTTTGATGCCCAGCCTCAGCCACCAGCCCCCAA...CCAGATCATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR TCA 90 bp | TTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGACAGAATGCAGTCCTaGGCCCTGGTCTCGCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: LSPAGLAAAAFLHLSSMPDRMQS*ALVSLS Trigger: GCTCAGCGAGACCAGGGCTCAGGACTGCATTCTGTC...GGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | AGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCTCTGGCCATGTCTaGAGCCTCCACCTTGATCAG | + |
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Preference number: 4 (lower is better) Translates to: SPAGLAAAAFLHLSSMPAGSGHV*SLHLDQ Trigger: CTGATCAAGGTGGAGGCTGCAGACATGGCCAGAGCC...TGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | CCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCGCCGAACGAGGTAGCTaGCTTCCTTGCAGAGGGACA | + |
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Preference number: 4 (lower is better) Translates to: PGLSPAGLAAAAFLHLSSAERGS*LPCRGT Trigger: TGTCCCTCTGCAAGGAAGGCAGCTACCTCGTTCGGC...GCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | CAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGGCCGAACGAGGTAGCTaGCTTCCTTGCAGAGGGACA | + |
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Preference number: 4 (lower is better) Translates to: QAWRQPPFFTCQACPQAMAERGS*LPCRGT Trigger: TGTCCCTCTGCAAGGAAGGCAGCTACCTCGTTCGGC...CATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | CGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGATCTGGAGCGGGAAGGGCCCACTGTaGTGTCCCAGTACCACCTGG | + |
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Preference number: 4 (lower is better) Translates to: RQPPFFTCQACPQAMIWSGKGPL*CPSTTW Trigger: CCAGGTGGTACTGGGACAGCACAGTGGGCCCTTCCC...GCTCCAGATCATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | ATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCTCCAGGGCTCCTTGGTaGAGCATGGAGTCCGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: IPRVEPSRPGGSRLSSPVSRAPW*SMESVP Trigger: GGGAACGGACTCCATGCTCCACCAAGGAGCCCTGGA...GACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | ATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCCCAGCTCAGGTATGCTaGGGAAGGGCCCACTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: IPRVEPSRPGGSRLSSPVPAQVC*GRAHCA Trigger: AGCACAGTGGGCCCTTCCCCAGCATACCTGAGCTGG...GACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR TCA 90 bp | TGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGATCTGGGACAGAATGCAGTCCTaGGCCCTGGTCTCGCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: WRQPPFFTCQACPQAMIWDRMQS*ALVSLS Trigger: GCTCAGCGAGACCAGGGCTCAGGACTGCATTCTGTC...CCAGATCATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | TGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGATCTGGCCATGTACCCACTGTTaGGGGCTGGTGGCTGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: WRQPPFFTCQACPQAMIWPCTHC*GLVAEA Trigger: AGCCTCAGCCACCAGCCCCCAACAGTGGGTACATGG...CCAGATCATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | CGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGATCTGGAGCCCATGTACCCACTGTTaGGGGCTGGTGGCTGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: RQPPFFTCQACPQAMIWSPCTHC*GLVAEA Trigger: AGCCTCAGCCACCAGCCCCCAACAGTGGGTACATGG...GCTCCAGATCATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | CGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGATCTGGAGCTCCAGGGCTCCTTGGTaGAGCATGGAGTCCGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: RQPPFFTCQACPQAMIWSSRAPW*SMESVP Trigger: GGGAACGGACTCCATGCTCCACCAAGGAGCCCTGGA...GCTCCAGATCATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR TCA 90 bp | TGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGATCTGGAATGTGCAGGGTCCTTaGGAGCTCTGGCTGCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: WRQPPFFTCQACPQAMIWNVQGP*ELWLLV Trigger: CACCAGCAGCCAGAGCTCTCAAGGACCCTGCACATT...CCAGATCATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | CCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCAAAGCTGGACAGCTCTaGTTGGCTGTTCACTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: PAGLAAAAFLHLSSMPAGKAGQL*LAVHWR Trigger: TCTCCAGTGAACAGCCAAGCAGAGCTGTCCAGCTTT...GCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | CAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGAGACCCTCCATCTTCTaGTTTCGTAGCCTGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: QAWRQPPFFTCQACPQAMRPSIF*FRSLLL Trigger: GAGGAGCAGGCTACGAAACCAGAAGATGGAGGGTCT...CATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | CAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGGCACTGCGAAAGCCCTaGAGATGTGATCCTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: QAWRQPPFFTCQACPQAMALRKP*RCDPSS Trigger: GGAAGAAGGATCACATCTCCAGGGCTTTCGCAGTGC...CATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | TTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCCCCTTGTCCCCTCTCTaGCTTAGCAGCCAATGTGCA | + |
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Preference number: 4 (lower is better) Translates to: LSPAGLAAAAFLHLSSMPPLSPL*LSSQCA Trigger: TGCACATTGGCTGCTAAGCCAGAGAGGGGACAAGGG...GGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAA 61% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR TCA 90 bp | CCGTGTGGATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTAACCCTGGTTGCTTCTaGGAGACAGAATGCAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: PCGFPGLSPAGLAAAAFLNPGCF*ETECSP Trigger: AGGACTGCATTCTGTCTCTCAGAAGCAACCAGGGTT...AAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | AGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAAAAGCTGGACAGCTCTaGTTGGCTGTTCACTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: SPAGLAAAAFLHLSSMPAKAGQL*LAVHWR Trigger: TCTCCAGTGAACAGCCAAGCAGAGCTGTCCAGCTTT...TGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | ACCGTGTGGATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTAGGTGCATGGAACCCTaGTTGCTTCTGAGAGACAGA | + |
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Preference number: 4 (lower is better) Translates to: TVWIPRVEPSRPGGSRLSRCMEP*LLLRDR Trigger: TCTGTCTCTCAGAAGCAACCAGGGTTCCATGCACCT...AGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | CGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGATCTGGAGCAGACCCTCCATCTTCTaGTTTCGTAGCCTGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: RQPPFFTCQACPQAMIWSRPSIF*FRSLLL Trigger: GAGGAGCAGGCTACGAAACCAGAAGATGGAGGGTCT...GCTCCAGATCATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR GCA 90 bp | AAAGGGGTCTCAGCCTTCGGTAAAACCAAGCAGGGCATGCACCAGGTCCAGCTTGGCTCTGGCCATGTCTaGAGCCTCCACCTTGATCAG | + |
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Preference number: 4 (lower is better) Translates to: KGVSAFGKTKQGMHQVQLGSGHV*SLHLDQ Trigger: CTGATCAAGGTGGAGGCTGCAGACATGGCCAGAGCC...AAGCTGGACCTGGTGCATGCCCTGCTTGGTTTTACCGAAGGCTGAGACCCCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225145.2 |
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| CDS-3UTR CCA 90 bp | TTTGTAAATCAGAGAACGACTTGCAGCTCTCGGCTGCCACCGTGTGGATTCCCAACGCTCCGCAGGCTGTaGTCTCCAGGGCTCCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: FVNQRTTCSSRLPPCGFPTLRRL*SPGLLG Trigger: ACCAAGGAGCCCTGGAGACCACAGCCTGCGGAGCGT...TGGGAATCCACACGGTGGCAGCCGAGAGCTGCAAGTCGTTCTCTGATTTACAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | TTTGTAAATCAGAGAACGACTTGCAGCTCTCGGCTGCCACCGTGTGGATTCCCACCCTTGTCCCCTCTCTaGCTTAGCAGCCAATGTGCA | + |
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Preference number: 4 (lower is better) Translates to: FVNQRTTCSSRLPPCGFPPLSPL*LSSQCA Trigger: TGCACATTGGCTGCTAAGCCAGAGAGGGGACAAGGG...TGGGAATCCACACGGTGGCAGCCGAGAGCTGCAAGTCGTTCTCTGATTTACAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS-3UTR CCA 90 bp | TTTGTAAATCAGAGAACGACTTGCAGCTCTCGGCTGCCACCGTGTGGATTCCCAAGGTGCATGGAACCCTaGTTGCTTCTGAGAGACAGA | + |
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Preference number: 4 (lower is better) Translates to: FVNQRTTCSSRLPPCGFPRCMEP*LLLRDR Trigger: TCTGTCTCTCAGAAGCAACCAGGGTTCCATGCACCT...TGGGAATCCACACGGTGGCAGCCGAGAGCTGCAAGTCGTTCTCTGATTTACAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| 3UTR CAA 72 bp | CTCATTGTAGCTAGTTTTAGGTCAGCCTGGGCAATGTaGGACCAGGTCTCACACAAACCAAAAACAACACCT | + |
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Preference number: 4 (lower is better) Translates to: LIVASFRSAWAM*DQVSHKPKTTP Trigger: AGGTGTTGTTTTTGGTTTGTGTGAGACCTGGTCCAACATTGCCCAGGCTGACCTAAAACTAGCTACAATGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225145.2 |
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| CDS CCA 90 bp | GTTCGCGGTAGGCCCGCAGGATGTCGCTCTCGGTGTAGTCGGGGGTaGGCGGCTGCGGAGGCGGCCTCCGGCTGCCCAAGTTCAGATAGT | + |
|
Preference number: 5 (lower is better) Translates to: VRGRPAGCRSRCSRG*AAAEAASGCPSSDS Trigger: ACTATCTGAACTTGGGCAGCCGGAGGCCGCCTCCGCAGCCGCCCACCCCCGACTACACCGAGAGCGACATCCTGCGGGCCTACCGCGAAC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 ENSMUST00000225145.2 |
||
| CDS-3UTR CAA 90 bp | TTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCCAGGTGCTCTGCCCCTaGCACGGGCAGTGGGCGGGC | + |
|
Preference number: 5 (lower is better) Translates to: LSPAGLAAAAFLHLSSMPQVLCP*HGQWAG Trigger: GCCCGCCCACTGCCCGTGCAAGGGGCAGAGCACCTG...GGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | CGGCTGCCACCGTGTGGATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCCGGTGCCTAGGAGAGTaGTACTTGGGGTCACCGGAC | + |
|
Preference number: 5 (lower is better) Translates to: RLPPCGFPGLSPAGLAAARCLGE*YLGSPD Trigger: GTCCGGTGACCCCAAGTACAACTCTCCTAGGCACCG...GGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGGTGGCAGCCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | TGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGCCATGATCTGGCAGGTGCTCTGCCCCTaGCACGGGCAGTGGGCGGGC | + |
|
Preference number: 5 (lower is better) Translates to: WRQPPFFTCQACPQAMIWQVLCP*HGQWAG Trigger: GCCCGCCCACTGCCCGTGCAAGGGGCAGAGCACCTG...CCAGATCATGGCCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | GCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGGTCTCCAGGGCTCCTaGGTGGAGCATGGAGTCCGT | + |
|
Preference number: 5 (lower is better) Translates to: AQQAWRQPPFFTCQACPQGLQGS*VEHGVR Trigger: ACGGACTCCATGCTCCACCAAGGAGCCCTGGAGACC...CTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | CCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCAGGGCTGGACAGCTCTGCTaGGCTGTTCACTGGAGACGC | + |
|
Preference number: 5 (lower is better) Translates to: PSRPGGSRLSSPVKHARRAGQLC*AVHWRR Trigger: GCGTCTCCAGTGAACAGCCAAGCAGAGCTGTCCAGC...CCTGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS TCA 90 bp | CAGAGGGACAGAAGGTTCTCGGCCTCTGCTCGGCTCAGGGGGCCGTaGAACCACGGCTGCTTCTCCAGGGCAAGGGCTGTATCCACACGC | + |
|
Preference number: 5 (lower is better) Translates to: QRDRRFSASARLRGP*NHGCFSRARAVSTR Trigger: GCGTGTGGATACAGCCCTTGCCCTGGAGAAGCAGCCGTGGTTTCACGGCCCCCTGAGCCGAGCAGAGGCCGAGAACCTTCTGTCCCTCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 90 bp | CGGGCAGTGGGCGGGCACTGTAATGCAGGACCAGCTCAGGTATGCTaGGGAAGGGCCCACTGTGCTGTCCCAGTACCACCTGGTTCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: RAVGGHCNAGPAQVC*GRAHCAVPVPPGSP Trigger: GGGAGAACCAGGTGGTACTGGGACAGCACAGTGGGCCCTTCCCCAGCATACCTGAGCTGGTCCTGCATTACAGTGCCCGCCCACTGCCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | ACCGTGTGGATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTCGGTGCCTAGGAGAGTaGTACTTGGGGTCACCGGAC | + |
|
Preference number: 5 (lower is better) Translates to: TVWIPRVEPSRPGGSRLSRCLGE*YLGSPD Trigger: GTCCGGTGACCCCAAGTACAACTCTCCTAGGCACCG...AGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | CCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCTCTGCAGCCTCCACCTaGATCAGCCGGTGCCTAGGA | + |
|
Preference number: 5 (lower is better) Translates to: PGLSPAGLAAAAFLHLSSSAAST*ISRCLG Trigger: TCCTAGGCACCGGCTGATCAAGGTGGAGGCTGCAGA...GCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | ACCGTGTGGATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTGCTGGACAGCTCTGCTaGGCTGTTCACTGGAGACGC | + |
|
Preference number: 5 (lower is better) Translates to: TVWIPRVEPSRPGGSRLSAGQLC*AVHWRR Trigger: GCGTCTCCAGTGAACAGCCAAGCAGAGCTGTCCAGC...AGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS GCA 90 bp | GCACGGGCAGTGGGCGGGCACTGTAATGCAGGACCAGCTCAGGTATaGTGGGGAAGGGCCCACTGTGCTGTCCCAGTACCACCTGGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: ARAVGGHCNAGPAQV*WGRAHCAVPVPPGS Trigger: AGAACCAGGTGGTACTGGGACAGCACAGTGGGCCCTTCCCCAGCATACCTGAGCTGGTCCTGCATTACAGTGCCCGCCCACTGCCCGTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 90 bp | CTGCTTCTCCAGGGCAAGGGCTGTATCCACACGCTCCGCAGGCTGTaGTCTCCAGGGCTCCTTGGTGGAGCATGGAGTCCGTTCCCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: LLLQGKGCIHTLRRL*SPGLLGGAWSPFPV Trigger: GACTGGGAACGGACTCCATGCTCCACCAAGGAGCCCTGGAGACCACAGCCTGCGGAGCGTGTGGATACAGCCCTTGCCCTGGAGAAGCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | TTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCTCTGCAGCCTCCACCTaGATCAGCCGGTGCCTAGGA | + |
|
Preference number: 5 (lower is better) Translates to: LSPAGLAAAAFLHLSSMPSAAST*ISRCLG Trigger: TCCTAGGCACCGGCTGATCAAGGTGGAGGCTGCAGA...GGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | ACCGTGTGGATTCCCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTCAATGTGCAGGGTCCTaGAGAGCTCTGGCTGCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: TVWIPRVEPSRPGGSRLSQCAGS*RALAAG Trigger: ACCAGCAGCCAGAGCTCTCAAGGACCCTGCACATTG...AGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGGGAATCCACACGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 90 bp | GTGCCTAGGAGAGTTGTACTTGGGGTCACCGGACCCGGTGACCTCTaGCTCAGCGCGGCCATTGGAATCCTCATAGGGGTCCTCGAAGTC | + |
|
Preference number: 5 (lower is better) Translates to: VPRRVVLGVTGPGDL*LSAAIGILIGVLEV Trigger: GACTTCGAGGACCCCTATGAGGATTCCAATGGCCGCGCTGAGCCAGAGGTCACCGGGTCCGGTGACCCCAAGTACAACTCTCCTAGGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 ENSMUST00000225145.2 |
||
| CDS CCA 90 bp | CACTGGAGACGCTCCGGGCATCATAGGGCTCCATGTACCCACTGTTaGGGGCTGGTGGCTGAGGCTGGGCATCAAAAGGGTCTGAGTACT | + |
|
Preference number: 5 (lower is better) Translates to: HWRRSGHHRAPCTHC*GLVAEAGHQKGLST Trigger: AGTACTCAGACCCTTTTGATGCCCAGCCTCAGCCACCAGCCCCCAACAGTGGGTACATGGAGCCCTATGATGCCCGGAGCGTCTCCAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 90 bp | TCGTATTCATCTGCTGGCCTCTCATCCTCCAGGGGCCTCCGGCTCTaGCCCGAAGACCCTCCATCTTCTGGTTTCGTAGCCTGCTCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: SYSSAGLSSSRGLRL*PEDPPSSGFVACSS Trigger: TGAGGAGCAGGCTACGAAACCAGAAGATGGAGGGTCTTCGGGCCAGAGCCGGAGGCCCCTGGAGGATGAGAGGCCAGCAGATGAATACGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 90 bp | CACACGCTCCGCAGGCTGTGGTCTCCAGGGCTCCTTGGTGGAGCATaGAGTCCGTTCCCAGTCAGGACCATCAAATTGCACTGCGAAAGC | + |
|
Preference number: 5 (lower is better) Translates to: HTLRRLWSPGLLGGA*SPFPVRTIKLHCES Trigger: GCTTTCGCAGTGCAATTTGATGGTCCTGACTGGGAACGGACTCCATGCTCCACCAAGGAGCCCTGGAGACCACAGCCTGCGGAGCGTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 90 bp | TCAGGTATGCTGGGGAAGGGCCCACTGTGCTGTCCCAGTACCACCTaGTTCTCCCGGGTCCTTGCGAATTTCAGGTGCATGGAACCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: SGMLGKGPLCCPSTT*FSRVLANFRCMEPW Trigger: CCAGGGTTCCATGCACCTGAAATTCGCAAGGACCCGGGAGAACCAGGTGGTACTGGGACAGCACAGTGGGCCCTTCCCCAGCATACCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | CCAGGGTTGAGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCTGCATGGAACCCTGGTaGCTTCTGAGAGACAGAATG | + |
|
Preference number: 5 (lower is better) Translates to: PGLSPAGLAAAAFLHLSSCMEPW*LLRDRM Trigger: CATTCTGTCTCTCAGAAGCAACCAGGGTTCCATGCA...GCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCTCAACCCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | AGCCCAGCAGGCCTGGCGGCAGCCGCCTTTCTTCACCTGTCAAGCATGCCCGCATGCATGGAACCCTGGTaGCTTCTGAGAGACAGAATG | + |
|
Preference number: 5 (lower is better) Translates to: SPAGLAAAAFLHLSSMPACMEPW*LLRDRM Trigger: CATTCTGTCTCTCAGAAGCAACCAGGGTTCCATGCA...TGCGGGCATGCTTGACAGGTGAAGAAAGGCGGCTGCCGCCAGGCCTGCTGGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 90 bp | CTGTATCCACACGCTCCGCAGGCTGTGGTCTCCAGGGCTCCTTGGTaGAGCATGGAGTCCGTTCCCAGTCAGGACCATCAAATTGCACTG | + |
|
Preference number: 5 (lower is better) Translates to: LYPHAPQAVVSRAPW*SMESVPSQDHQIAL Trigger: CAGTGCAATTTGATGGTCCTGACTGGGAACGGACTCCATGCTCCACCAAGGAGCCCTGGAGACCACAGCCTGCGGAGCGTGTGGATACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | GACTTGTTTGTAAATCAGAGAACGACTTGCAGCTCTCGGCTGCCACCGTGTGGAGGTCTCCAGGGCTCCTaGGTGGAGCATGGAGTCCGT | + |
|
Preference number: 5 (lower is better) Translates to: DLFVNQRTTCSSRLPPCGGLQGS*VEHGVR Trigger: ACGGACTCCATGCTCCACCAAGGAGCCCTGGAGACC...TCCACACGGTGGCAGCCGAGAGCTGCAAGTCGTTCTCTGATTTACAAACAAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 90 bp | CATATGGAGTATCGTAAAGCTGGACAGCTCTGCTTGGCTGTTCACTaGAGACGCTCCGGGCATCATAGGGCTCCATGTACCCACTGTTGG | + |
|
Preference number: 5 (lower is better) Translates to: HMEYRKAGQLCLAVH*RRSGHHRAPCTHCW Trigger: CCAACAGTGGGTACATGGAGCCCTATGATGCCCGGAGCGTCTCCAGTGAACAGCCAAGCAGAGCTGTCCAGCTTTACGATACTCCATATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | TTTGTAAATCAGAGAACGACTTGCAGCTCTCGGCTGCCACCGTGTGGATTCCCACAATGTGCAGGGTCCTaGAGAGCTCTGGCTGCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: FVNQRTTCSSRLPPCGFPQCAGS*RALAAG Trigger: ACCAGCAGCCAGAGCTCTCAAGGACCCTGCACATTG...TGGGAATCCACACGGTGGCAGCCGAGAGCTGCAAGTCGTTCTCTGATTTACAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS-3UTR CAA 90 bp | TTTAGGTCAGCCTGGGCAATGTTGGACCAGGTCTCACACAAACCAAAAACAACACGGTGCCTAGGAGAGTaGTACTTGGGGTCACCGGAC | + |
|
Preference number: 5 (lower is better) Translates to: FRSAWAMLDQVSHKPKTTRCLGE*YLGSPD Trigger: GTCCGGTGACCCCAAGTACAACTCTCCTAGGCACCG...TGTTGTTTTTGGTTTGTGTGAGACCTGGTCCAACATTGCCCAGGCTGACCTAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225145.2 |
||
| CDS CAA 90 bp | CTGGCTGCTGGTGACAGGATAGAGCAGGGCCAGGTGCTCTGCCCCTaGCACGGGCAGTGGGCGGGCACTGTAATGCAGGACCAGCTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: LAAGDRIEQGQVLCP*HGQWAGTVMQDQLR Trigger: CCTGAGCTGGTCCTGCATTACAGTGCCCGCCCACTGCCCGTGCAAGGGGCAGAGCACCTGGCCCTGCTCTATCCTGTCACCAGCAGCCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 72 bp | GAGCAGGGCCAGGTGCTCTGCCCCTTGCACGGGCAGTaGGCGGGCACTGTAATGCAGGACCAGCTCAGGTAT | + |
|
Preference number: 6 (lower is better) Translates to: EQGQVLCPLHGQ*AGTVMQDQLRY Trigger: ATACCTGAGCTGGTCCTGCATTACAGTGCCCGCCCACTGCCCGTGCAAGGGGCAGAGCACCTGGCCCTGCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CAA 90 bp | GCCATGTCTGCAGCCTCCACCTTGATCAGCCGGTGCCTAGGAGAGTaGTACTTGGGGTCACCGGACCCGGTGACCTCTGGCTCAGCGCGG | + |
|
Preference number: 6 (lower is better) Translates to: AMSAASTLISRCLGE*YLGSPDPVTSGSAR Trigger: CCGCGCTGAGCCAGAGGTCACCGGGTCCGGTGACCCCAAGTACAACTCTCCTAGGCACCGGCTGATCAAGGTGGAGGCTGCAGACATGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 ENSMUST00000225145.2 |
||
| CDS TCA 72 bp | AGAAGGTTCTCGGCCTCTGCTCGGCTCAGGGGGCCGTaGAACCACGGCTGCTTCTCCAGGGCAAGGGCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: RRFSASARLRGP*NHGCFSRARAV Trigger: TACAGCCCTTGCCCTGGAGAAGCAGCCGTGGTTTCACGGCCCCCTGAGCCGAGCAGAGGCCGAGAACCTTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 72 bp | TCTGCTGGCCTCTCATCCTCCAGGGGCCTCCGGCTCTaGCCCGAAGACCCTCCATCTTCTGGTTTCGTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: SAGLSSSRGLRL*PEDPPSSGFVA Trigger: GGCTACGAAACCAGAAGATGGAGGGTCTTCGGGCCAGAGCCGGAGGCCCCTGGAGGATGAGAGGCCAGCAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CAA 72 bp | GCAGCCTCCACCTTGATCAGCCGGTGCCTAGGAGAGTaGTACTTGGGGTCACCGGACCCGGTGACCTCTGGC | + |
|
Preference number: 6 (lower is better) Translates to: AASTLISRCLGE*YLGSPDPVTSG Trigger: GCCAGAGGTCACCGGGTCCGGTGACCCCAAGTACAACTCTCCTAGGCACCGGCTGATCAAGGTGGAGGCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 ENSMUST00000225145.2 |
||
| CDS CAA 72 bp | TCCACACGCTCCGCAGGCTGTGGTCTCCAGGGCTCCTaGGTGGAGCATGGAGTCCGTTCCCAGTCAGGACCA | + |
|
Preference number: 6 (lower is better) Translates to: STRSAGCGLQGS*VEHGVRSQSGP Trigger: TGGTCCTGACTGGGAACGGACTCCATGCTCCACCAAGGAGCCCTGGAGACCACAGCCTGCGGAGCGTGTGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CAA 90 bp | TCTGCAGCCTCCACCTTGATCAGCCGGTGCCTAGGAGAGTTGTACTaGGGGTCACCGGACCCGGTGACCTCTGGCTCAGCGCGGCCATTG | + |
|
Preference number: 6 (lower is better) Translates to: SAASTLISRCLGELY*GSPDPVTSGSARPL Trigger: CAATGGCCGCGCTGAGCCAGAGGTCACCGGGTCCGGTGACCCCAAGTACAACTCTCCTAGGCACCGGCTGATCAAGGTGGAGGCTGCAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 ENSMUST00000225145.2 |
||
| CDS GCA 72 bp | CTGGCCATGTCTGCAGCCTCCACCTTGATCAGCCGGTaGCTAGGAGAGTTGTACTTGGGGTCACCGGACCCG | + |
|
Preference number: 6 (lower is better) Translates to: LAMSAASTLISR*LGELYLGSPDP Trigger: CGGGTCCGGTGACCCCAAGTACAACTCTCCTAGGCACCGGCTGATCAAGGTGGAGGCTGCAGACATGGCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 ENSMUST00000225145.2 |
||
| CDS GCA 72 bp | GTGGGCGGGCACTGTAATGCAGGACCAGCTCAGGTATaGTGGGGAAGGGCCCACTGTGCTGTCCCAGTACCA | + |
|
Preference number: 6 (lower is better) Translates to: VGGHCNAGPAQV*WGRAHCAVPVP Trigger: TGGTACTGGGACAGCACAGTGGGCCCTTCCCCAGCATACCTGAGCTGGTCCTGCATTACAGTGCCCGCCCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 72 bp | CACGCTCCGCAGGCTGTGGTCTCCAGGGCTCCTTGGTaGAGCATGGAGTCCGTTCCCAGTCAGGACCATCAA | + |
|
Preference number: 6 (lower is better) Translates to: HAPQAVVSRAPW*SMESVPSQDHQ Trigger: TTGATGGTCCTGACTGGGAACGGACTCCATGCTCCACCAAGGAGCCCTGGAGACCACAGCCTGCGGAGCGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CAA 72 bp | TCCACCTTGATCAGCCGGTGCCTAGGAGAGTTGTACTaGGGGTCACCGGACCCGGTGACCTCTGGCTCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: STLISRCLGELY*GSPDPVTSGSA Trigger: CGCTGAGCCAGAGGTCACCGGGTCCGGTGACCCCAAGTACAACTCTCCTAGGCACCGGCTGATCAAGGTGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 ENSMUST00000225145.2 |
||
| CDS TCA 72 bp | GGGGGCTGGTGGCTGAGGCTGGGCATCAAAAGGGTCTaGGTACTCAGTTTCTGCTTCCGGCTGCTCTTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: GGWWLRLGIKRV*VLSFCFRLLFP Trigger: GGGGAAGAGCAGCCGGAAGCAGAAACTGAGTACTCAGACCCTTTTGATGCCCAGCCTCAGCCACCAGCCCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000223629.2 |
||
| CDS CCA 72 bp | CTGGGGAAGGGCCCACTGTGCTGTCCCAGTACCACCTaGTTCTCCCGGGTCCTTGCGAATTTCAGGTGCATG | + |
|
Preference number: 6 (lower is better) Translates to: LGKGPLCCPSTT*FSRVLANFRCM Trigger: CATGCACCTGAAATTCGCAAGGACCCGGGAGAACCAGGTGGTACTGGGACAGCACAGTGGGCCCTTCCCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CAA 90 bp | AGGGCTGTATCCACACGCTCCGCAGGCTGTGGTCTCCAGGGCTCCTaGGTGGAGCATGGAGTCCGTTCCCAGTCAGGACCATCAAATTGC | + |
|
Preference number: 6 (lower is better) Translates to: RAVSTRSAGCGLQGS*VEHGVRSQSGPSNC Trigger: GCAATTTGATGGTCCTGACTGGGAACGGACTCCATGCTCCACCAAGGAGCCCTGGAGACCACAGCCTGCGGAGCGTGTGGATACAGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 72 bp | CGCAGGCTGTGGTCTCCAGGGCTCCTTGGTGGAGCATaGAGTCCGTTCCCAGTCAGGACCATCAAATTGCAC | + |
|
Preference number: 6 (lower is better) Translates to: RRLWSPGLLGGA*SPFPVRTIKLH Trigger: GTGCAATTTGATGGTCCTGACTGGGAACGGACTCCATGCTCCACCAAGGAGCCCTGGAGACCACAGCCTGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CCA 72 bp | GGGCCTCCGGCTCTGGCCCGAAGACCCTCCATCTTCTaGTTTCGTAGCCTGCTCCTCATATGGAGTATCGTA | + |
|
Preference number: 6 (lower is better) Translates to: GPPALARRPSIF*FRSLLLIWSIV Trigger: TACGATACTCCATATGAGGAGCAGGCTACGAAACCAGAAGATGGAGGGTCTTCGGGCCAGAGCCGGAGGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
||
| CDS CAA 72 bp | TCCCCTCTCTGGCTTAGCAGCCAATGTGCAGGGTCCTaGAGAGCTCTGGCTGCTGGTGACAGGATAGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SPLWLSSQCAGS*RALAAGDRIEQ Trigger: CTGCTCTATCCTGTCACCAGCAGCCAGAGCTCTCAAGGACCCTGCACATTGGCTGCTAAGCCAGAGAGGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS CAA 72 bp | TGTGCTGTCCCAGTACCACCTGGTTCTCCCGGGTCCTaGCGAATTTCAGGTGCATGGAACCCTGGTTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: CAVPVPPGSPGS*RISGAWNPGCF Trigger: GAAGCAACCAGGGTTCCATGCACCTGAAATTCGCAAGGACCCGGGAGAACCAGGTGGTACTGGGACAGCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS CCA 72 bp | TATCGTAAAGCTGGACAGCTCTGCTTGGCTGTTCACTaGAGACGCTCCGGGCATCATAGGGCTCCATGTACC | + |
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Preference number: 6 (lower is better) Translates to: YRKAGQLCLAVH*RRSGHHRAPCT Trigger: GGTACATGGAGCCCTATGATGCCCGGAGCGTCTCCAGTGAACAGCCAAGCAGAGCTGTCCAGCTTTACGATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS CAA 90 bp | CTCCTTGGTGGAGCATGGAGTCCGTTCCCAGTCAGGACCATCAAATaGCACTGCGAAAGCCCTGGAGATGTGATCCTTCTTCCACTCCCA | + |
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Preference number: 6 (lower is better) Translates to: LLGGAWSPFPVRTIK*HCESPGDVILLPLP Trigger: TGGGAGTGGAAGAAGGATCACATCTCCAGGGCTTTCGCAGTGCAATTTGATGGTCCTGACTGGGAACGGACTCCATGCTCCACCAAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS GCA 72 bp | TGGAGTCCGTTCCCAGTCAGGACCATCAAATTGCACTaGGAAAGCCCTGGAGATGTGATCCTTCTTCCACTC | + |
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Preference number: 6 (lower is better) Translates to: WSPFPVRTIKLH*ESPGDVILLPL Trigger: GAGTGGAAGAAGGATCACATCTCCAGGGCTTTCGCAGTGCAATTTGATGGTCCTGACTGGGAACGGACTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS CCA 72 bp | CCCTCCATCTTCTGGTTTCGTAGCCTGCTCCTCATATaGAGTATCGTAAAGCTGGACAGCTCTGCTTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: PSIFWFRSLLLI*SIVKLDSSAWL Trigger: CAGCCAAGCAGAGCTGTCCAGCTTTACGATACTCCATATGAGGAGCAGGCTACGAAACCAGAAGATGGAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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| CDS CAA 72 bp | GGAGCATGGAGTCCGTTCCCAGTCAGGACCATCAAATaGCACTGCGAAAGCCCTGGAGATGTGATCCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: GAWSPFPVRTIK*HCESPGDVILL Trigger: AAGAAGGATCACATCTCCAGGGCTTTCGCAGTGCAATTTGATGGTCCTGACTGGGAACGGACTCCATGCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044216.8 ENSMUST00000223629.2 |
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