Pregenerated sensors for SHCBP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022322

Ensembl transcript IDs: ENSMUST00000022945.9, ENSMUST00000207262.2, ENSMUST00000207876.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GGCCAAGGTAAACGTGCTCAATTTAGATTCATAGATGCATGGCTCTaGAAGCCTTACGACCGCCTTCAGGGATGGAAAGTCCACATTTGT	+
Preference number: 5 (lower is better) Translates to: GQGKRAQFRFIDAWL*KPYDRLQGWKVHIC Trigger: ACAAATGTGGACTTTCCATCCCTGAAGGCGGTCGTAAGGCTTGCAGAGCCATGCATCTATGAATCTAAATTGAGCACGTTTACCTTGGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022945.9 ENSMUST00000207262.2
CDS CCA 90 bp	TTCATAGATGCATGGCTCTGCAAGCCTTACGACCGCCTTCAGGGATaGAAAGTCCACATTTGTAACCTCAACCAACACCTCAAACACATT	+
Preference number: 5 (lower is better) Translates to: FIDAWLCKPYDRLQG*KVHICNLNQHLKHI Trigger: AATGTGTTTGAGGTGTTGGTTGAGGTTACAAATGTGGACTTTCCATCCCTGAAGGCGGTCGTAAGGCTTGCAGAGCCATGCATCTATGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022945.9 ENSMUST00000207262.2
CDS TCA 72 bp	TCATCTGATACCACCCACAACTCCTGCAGAGGCAGATaGAACTCCTTCAGGTCCAAAAGCTCCTTCACATTG	+
Preference number: 6 (lower is better) Translates to: SSDTTHNSCRGR*NSFRSKSSFTL Trigger: CAATGTGAAGGAGCTTTTGGACCTGAAGGAGTTTCATCTGCCTCTGCAGGAGTTGTGGGTGGTATCAGATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022945.9 ENSMUST00000207262.2
CDS TCA 72 bp	GTGGAGGAAACCACATGGATGACCTTCTGGCCATTTTaGCGAGTACCCTTTCCTTGGATATTAGAGTTCTTC	+
Preference number: 6 (lower is better) Translates to: VEETTWMTFWPF*RVPFPWILEFF Trigger: GAAGAACTCTAATATCCAAGGAAAGGGTACTCGTCAAAATGGCCAGAAGGTCATCCATGTGGTTTCCTCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022945.9 ENSMUST00000207876.2
CDS CAA 72 bp	GGTGGAGGAAACCACATGGATGACCTTCTGGCCATTTaGACGAGTACCCTTTCCTTGGATATTAGAGTTCTT	+
Preference number: 6 (lower is better) Translates to: GGGNHMDDLLAI*TSTLSLDIRVL Trigger: AAGAACTCTAATATCCAAGGAAAGGGTACTCGTCAAAATGGCCAGAAGGTCATCCATGTGGTTTCCTCCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022945.9 ENSMUST00000207876.2
CDS CCA 72 bp	TTTTCCTTCTGGTATGAGAGTTTTTACAGTAGCACCTaGATTAGCATGATAGCCTTGATCACTGCATGGATC	+
Preference number: 6 (lower is better) Translates to: FSFWYESFYSST*ISMIALITAWI Trigger: GATCCATGCAGTGATCAAGGCTATCATGCTAATCCAGGTGCTACTGTAAAAACTCTCATACCAGAAGGAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022945.9
CDS TCA 72 bp	TGTCATAATACAATCTCAGTCGAGGTTCAACACATCTaGCAAAATAGTCATACTCATCCTCCTCTTCCTCAT	+
Preference number: 6 (lower is better) Translates to: CHNTISVEVQHI*QNSHTHPPLPH Trigger: ATGAGGAAGAGGAGGATGAGTATGACTATTTTGTCAGATGTGTTGAACCTCGACTGAGATTGTATTATGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022945.9 ENSMUST00000207262.2

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