Pregenerated sensors for SHB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044813Ensembl transcript IDs: ENSMUST00000061986.12, ENSMUST00000146236.8, ENSMUST00000147448.2
Found 94 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGTGGTGTGCTAGTACCATACACACAACACACACTGGACACTGCTaGCAGCACAGACAGCTGGTCGGTGCCCTGCCAGCTCCTCCAAGG | + |
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Preference number: 1 (lower is better) Translates to: QWCASTIHTTHTGHC*QHRQLVGALPAPPR Trigger: CCTTGGAGGAGCTGGCAGGGCACCGACCAGCTGTCTGTGCTGCCAGCAGTGTCCAGTGTGTGTTGTGTGTATGGTACTAGCACACCACTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR GCA 90 bp | ATGCAGTGGTGTGCTAGTACCATACACACAACACACACTGGACACTaGTGGCAGCACAGACAGCTGGTCGGTGCCCTGCCAGCTCCTCCA | + |
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Preference number: 1 (lower is better) Translates to: MQWCASTIHTTHTGH*WQHRQLVGALPAPP Trigger: TGGAGGAGCTGGCAGGGCACCGACCAGCTGTCTGTGCTGCCAGCAGTGTCCAGTGTGTGTTGTGTGTATGGTACTAGCACACCACTGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR CCA 90 bp | GCCGCGGGCTGCCCTCTTCATCCAGGCCTTCTCCAACCCTGTAAGTaGCGACAGCATTCTAAGACATGCAGTGGTGTGCTAGTACCATAC | + |
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Preference number: 1 (lower is better) Translates to: AAGCPLHPGLLQPCK*RQHSKTCSGVLVPY Trigger: GTATGGTACTAGCACACCACTGCATGTCTTAGAATGCTGTCGCCACTTACAGGGTTGGAGAAGGCCTGGATGAAGAGGGCAGCCCGCGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR TCA 90 bp | CTTATGACATGGTCTCTTTTGTGTACACTCAATATGCACACCCAGTaGCACAGACACAGACCAGATGGGGTGGCTCCCAGGGCCTCCTGG | + |
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Preference number: 1 (lower is better) Translates to: LMTWSLLCTLNMHTQ*HRHRPDGVAPRASW Trigger: CCAGGAGGCCCTGGGAGCCACCCCATCTGGTCTGTGTCTGTGTCACTGGGTGTGCATATTGAGTGTACACAAAAGAGACCATGTCATAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR TCA 90 bp | CCTGGGCTCCCAGCACCAATGGGAAAAACCTTGCCCATACACAGGTaGGTTCCTGACAACTGGAAAACAAAGAGATACAGGCCAGAGCTC | + |
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Preference number: 1 (lower is better) Translates to: PGLPAPMGKTLPIHR*VPDNWKTKRYRPEL Trigger: GAGCTCTGGCCTGTATCTCTTTGTTTTCCAGTTGTCAGGAACTCACCTGTGTATGGGCAAGGTTTTTCCCATTGGTGCTGGGAGCCCAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR GCA 90 bp | CCAGGCCTTCTCCAACCCTGTAAGTGGCGACAGCATTCTAAGACATaGAGTGGTGTGCTAGTACCATACACACAACACACACTGGACACT | + |
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Preference number: 1 (lower is better) Translates to: PGLLQPCKWRQHSKT*SGVLVPYTQHTLDT Trigger: AGTGTCCAGTGTGTGTTGTGTGTATGGTACTAGCACACCACTGCATGTCTTAGAATGCTGTCGCCACTTACAGGGTTGGAGAAGGCCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR CCA 90 bp | CCGCTGGAGCAGCTCCACTTTTGTTCACCCTGGAAGGCATCTCTTTaGATTGCAAAGACTTTAATTCACAGAAACTCGAGGAGGGGGTGG | + |
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Preference number: 1 (lower is better) Translates to: PLEQLHFCSPWKASL*IAKTLIHRNSRRGW Trigger: CCACCCCCTCCTCGAGTTTCTGTGAATTAAAGTCTTTGCAATCCAAAGAGATGCCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGCGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR TCA 90 bp | ATATTCATAAATAATTGCATCCTCTTTGTCTGCACAATTGTTCCTTaGCATCTAACGGTTACAGAGTGTACATCTAAAAGGAGATGGGGG | + |
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Preference number: 1 (lower is better) Translates to: IFINNCILFVCTIVP*HLTVTECTSKRRWG Trigger: CCCCCATCTCCTTTTAGATGTACACTCTGTAACCGTTAGATGTCAAGGAACAATTGTGCAGACAAAGAGGATGCAATTATTTATGAATAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR-3UTR CCA 90 bp | GATACAGGCCAGAGCTCCGCCCCACCTACCGCTGGGCCCCACCCACTGCTGGGCTCCAAGGAACAGGCTTaGTCTCAGAGCAGGGTGAGG | + |
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Preference number: 2 (lower is better) Translates to: DTGQSSAPPTAGPHPLLGSKEQA*SQSRVR Trigger: CCTCACCCTGCTCTGAGACCAAGCCTGTTCCTTGGA...GCCCAGCAGTGGGTGGGGCCCAGCGGTAGGTGGGGCGGAGCTCTGGCCTGTATC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR-3UTR CCA 90 bp | ACTGGAAAACAAAGAGATACAGGCCAGAGCTCCGCCCCACCTACCGCTGGGCCCGGCAGCACAGACAGCTaGTCGGTGCCCTGCCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: TGKQRDTGQSSAPPTAGPGSTDS*SVPCQL Trigger: GAGCTGGCAGGGCACCGACCAGCTGTCTGTGCTGCC...GGGCCCAGCGGTAGGTGGGGCGGAGCTCTGGCCTGTATCTCTTTGTTTTCCAGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR-3UTR GCA 90 bp | GCTGGGGTGGTGTGGCCGCGGGCTGCCCTCTTCATCCAGGCCTTCTCCAACCCTCAGCATTCTAAGACATaGAGTGGTGTGCTAGTACCA | + |
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Preference number: 2 (lower is better) Translates to: AGVVWPRAALFIQAFSNPQHSKT*SGVLVP Trigger: TGGTACTAGCACACCACTGCATGTCTTAGAATGCTG...AGGGTTGGAGAAGGCCTGGATGAAGAGGGCAGCCCGCGGCCACACCACCCCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR CAA 90 bp | CCCACCCACTGCTGGGCCCCGCCCACCGCTGGAGCAGCTCCACTTTaGTTCACCCTGGAAGGCATCTCTTTGGATTGCAAAGACTTTAAT | + |
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Preference number: 2 (lower is better) Translates to: PTHCWAPPTAGAAPL*FTLEGISLDCKDFN Trigger: ATTAAAGTCTTTGCAATCCAAAGAGATGCCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGCGGTGGGCGGGGCCCAGCAGTGGGTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR-3UTR GCA 90 bp | CGCTGGAGCAGCTCCACTTTTGTTCACCCTGGAAGGCATCTCTTTGGATTGCAACAGACAGCTGGTCGGTaGCCTGCCAGCTCCTCCAAG | + |
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Preference number: 2 (lower is better) Translates to: RWSSSTFVHPGRHLFGLQQTAGR*PASSSK Trigger: CTTGGAGGAGCTGGCAGGGCACCGACCAGCTGTCTG...TTGCAATCCAAAGAGATGCCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR-3UTR CCA 90 bp | CTGGGCTCCCAGCACCAATGGGAAAAACCTTGCCCATACACAGGTGAGTTCCTGCTCCAACCCTGTAAGTaGCGACAGCATTCTAAGACA | + |
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Preference number: 2 (lower is better) Translates to: LGSQHQWEKPCPYTGEFLLQPCK*RQHSKT Trigger: TGTCTTAGAATGCTGTCGCCACTTACAGGGTTGGAG...CAGGAACTCACCTGTGTATGGGCAAGGTTTTTCCCATTGGTGCTGGGAGCCCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR CAA 90 bp | ACCGCTGGAGCAGCTCCACTTTTGTTCACCCTGGAAGGCATCTCTTaGGATTGCAAAGACTTTAATTCACAGAAACTCGAGGAGGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: TAGAAPLLFTLEGIS*DCKDFNSQKLEEGV Trigger: CACCCCCTCCTCGAGTTTCTGTGAATTAAAGTCTTTGCAATCCAAAGAGATGCCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGCGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR-3UTR GCA 90 bp | CTGGGCTCCCAGCACCAATGGGAAAAACCTTGCCCATACACAGGTGAGTTCCTGGGCATCTCTTTGGATTaGAAAGACTTTAATTCACAG | + |
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Preference number: 2 (lower is better) Translates to: LGSQHQWEKPCPYTGEFLGISLD*KDFNSQ Trigger: CTGTGAATTAAAGTCTTTGCAATCCAAAGAGATGCC...CAGGAACTCACCTGTGTATGGGCAAGGTTTTTCCCATTGGTGCTGGGAGCCCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR CCA 72 bp | AGACACAGACCAGATGGGGTGGCTCCCAGGGCCTCCTaGGCTCCCAGCACCAATGGGAAAAACCTTGCCCAT | + |
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Preference number: 3 (lower is better) Translates to: RHRPDGVAPRAS*APSTNGKNLAH Trigger: ATGGGCAAGGTTTTTCCCATTGGTGCTGGGAGCCCAGGAGGCCCTGGGAGCCACCCCATCTGGTCTGTGTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR CCA 72 bp | GCTAGTACCATACACACAACACACACTGGACACTGCTaGCAGCACAGACAGCTGGTCGGTGCCCTGCCAGCT | + |
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Preference number: 3 (lower is better) Translates to: ASTIHTTHTGHC*QHRQLVGALPA Trigger: AGCTGGCAGGGCACCGACCAGCTGTCTGTGCTGCCAGCAGTGTCCAGTGTGTGTTGTGTGTATGGTACTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR GCA 72 bp | TGTGCTAGTACCATACACACAACACACACTGGACACTaGTGGCAGCACAGACAGCTGGTCGGTGCCCTGCCA | + |
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Preference number: 3 (lower is better) Translates to: CASTIHTTHTGH*WQHRQLVGALP Trigger: TGGCAGGGCACCGACCAGCTGTCTGTGCTGCCAGCAGTGTCCAGTGTGTGTTGTGTGTATGGTACTAGCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR-3UTR CAA 90 bp | TTCCTGACAACTGGAAAACAAAGAGATACAGGCCAGAGCTCCGCCCCACCTACCCTCCAAGGAACAGGCTaGGTCTCAGAGCAGGGTGAG | + |
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Preference number: 3 (lower is better) Translates to: FLTTGKQRDTGQSSAPPTLQGTG*VSEQGE Trigger: CTCACCCTGCTCTGAGACCAAGCCTGTTCCTTGGAG...GGTAGGTGGGGCGGAGCTCTGGCCTGTATCTCTTTGTTTTCCAGTTGTCAGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR GCA 72 bp | GGCCTCCTGGGCTCCCAGCACCAATGGGAAAAACCTTaGCCATACACAGGTGAGTTCCTGACAACTGGAAAA | + |
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Preference number: 3 (lower is better) Translates to: GLLGSQHQWEKP*PYTGEFLTTGK Trigger: TTTTCCAGTTGTCAGGAACTCACCTGTGTATGGGCAAGGTTTTTCCCATTGGTGCTGGGAGCCCAGGAGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR TCA 72 bp | TGGTCTCTTTTGTGTACACTCAATATGCACACCCAGTaGCACAGACACAGACCAGATGGGGTGGCTCCCAGG | + |
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Preference number: 3 (lower is better) Translates to: WSLLCTLNMHTQ*HRHRPDGVAPR Trigger: CCTGGGAGCCACCCCATCTGGTCTGTGTCTGTGTCACTGGGTGTGCATATTGAGTGTACACAAAAGAGACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR CCA 72 bp | TGCCCTCTTCATCCAGGCCTTCTCCAACCCTGTAAGTaGCGACAGCATTCTAAGACATGCAGTGGTGTGCTA | + |
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Preference number: 3 (lower is better) Translates to: CPLHPGLLQPCK*RQHSKTCSGVL Trigger: TAGCACACCACTGCATGTCTTAGAATGCTGTCGCCACTTACAGGGTTGGAGAAGGCCTGGATGAAGAGGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR GCA 72 bp | CTCCAACCCTGTAAGTGGCGACAGCATTCTAAGACATaGAGTGGTGTGCTAGTACCATACACACAACACACA | + |
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Preference number: 3 (lower is better) Translates to: LQPCKWRQHSKT*SGVLVPYTQHT Trigger: TGTGTGTTGTGTGTATGGTACTAGCACACCACTGCATGTCTTAGAATGCTGTCGCCACTTACAGGGTTGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR GCA 72 bp | CCACTTTTGTTCACCCTGGAAGGCATCTCTTTGGATTaGAAAGACTTTAATTCACAGAAACTCGAGGAGGGG | + |
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Preference number: 3 (lower is better) Translates to: PLLFTLEGISLD*KDFNSQKLEEG Trigger: CCCCTCCTCGAGTTTCTGTGAATTAAAGTCTTTGCAATCCAAAGAGATGCCTTCCAGGGTGAACAAAAGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR GCA 90 bp | AGGGGCTGGGGTGGTGTGGCCGCGGGCTGCCCTCTTCATCCAGGCCTTCTCCAAGCCGCCGCTCGCTGCTaGTGCGGTAGAGGTGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: RGWGGVAAGCPLHPGLLQAAARC*CGRGAG Trigger: CCCCGCACCTCTACCGCAGCAGCAGCGAGCGGCGGC...TTGGAGAAGGCCTGGATGAAGAGGGCAGCCCGCGGCCACACCACCCCAGCCCCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR GCA 90 bp | CACCCACTGCTGGGCCCCGCCCACCGCTGGAGCAGCTCCACTTTTGTTCACCCTGCCGCTCGCTGCTGCTaGGGTAGAGGTGCGGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: HPLLGPAHRWSSSTFVHPAARCC*GRGAGS Trigger: GCTCCCCGCACCTCTACCGCAGCAGCAGCGAGCGGC...AGGGTGAACAAAAGTGGAGCTGCTCCAGCGGTGGGCGGGGCCCAGCAGTGGGTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR TCA 90 bp | TGCCAGCTCCTCCAAGGAACAGGCTTGGTCTCAGAGCAGGGTGAGGCTGGTCTTCGGGGAGCCGGAGGATaGGGACGAGGACGCGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: CQLLQGTGLVSEQGEAGLRGAGG*GRGRGG Trigger: GCCGCCGCGTCCTCGTCCTCATCCTCCGGCTCCCCG...AAGACCAGCCTCACCCTGCTCTGAGACCAAGCCTGTTCCTTGGAGGAGCTGGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR TCA 90 bp | GATACAGGCCAGAGCTCCGCCCCACCTACCGCTGGGCCCCACCCACTGCTGGGCTGGTGTAGTAGTGGATaGCTTCCGGGACGCTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: DTGQSSAPPTAGPHPLLGWCSSG*LPGRCQ Trigger: TTGACAGCGTCCCGGAAGTCATCCACTACTACACCA...GCCCAGCAGTGGGTGGGGCCCAGCGGTAGGTGGGGCGGAGCTCTGGCCTGTATC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR TCA 90 bp | CTGCTGGGCCCCGCCCACCGCTGGAGCAGCTCCACTTTTGTTCACCCTGGAAGGTCTGGAATTCTGTCATaGTCCTCTGGGCTTCGTAGG | + |
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Preference number: 4 (lower is better) Translates to: LLGPAHRWSSSTFVHPGRSGILS*SSGLRR Trigger: CCTACGAAGCCCAGAGGATCATGACAGAATTCCAGA...CCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGCGGTGGGCGGGGCCCAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CCA 90 bp | ACTGGAAAACAAAGAGATACAGGCCAGAGCTCCGCCCCACCTACCGCTGGGCCCAGTCCGCACAGCCACTaGGTAGAGGAGGGACAAGTG | + |
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Preference number: 4 (lower is better) Translates to: TGKQRDTGQSSAPPTAGPSPHSH*VEEGQV Trigger: CACTTGTCCCTCCTCTACCCAGTGGCTGTGCGGACT...GGGCCCAGCGGTAGGTGGGGCGGAGCTCTGGCCTGTATCTCTTTGTTTTCCAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR TCA 90 bp | CTAGTACCATACACACAACACACACTGGACACTGCTGGCAGCACAGACAGCTGGTCGGTCCCGAGAAGGTaGTGGGGAGGACTGCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: LVPYTQHTLDTAGSTDSWSVPRR*WGGLPL Trigger: AAGCGGCAGTCCTCCCCATCACCTTCTCGGGACCGA...CCAGCTGTCTGTGCTGCCAGCAGTGTCCAGTGTGTGTTGTGTGTATGGTACTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CCA 90 bp | CATGGTCTCTTTTGTGTACACTCAATATGCACACCCAGTGACACAGACACAGACCCCGGGGCACGGAGCTaGCGCCGTCGGTCCCGAGAA | + |
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Preference number: 4 (lower is better) Translates to: HGLFCVHSICTPSDTDTDPGARS*RRRSRE Trigger: TTCTCGGGACCGACGGCGCCAGCTCCGTGCCCCGGG...GTCTGTGTCTGTGTCACTGGGTGTGCATATTGAGTGTACACAAAAGAGACCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| 3UTR CAA 72 bp | TGCTGGGCCCCGCCCACCGCTGGAGCAGCTCCACTTTaGTTCACCCTGGAAGGCATCTCTTTGGATTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: CWAPPTAGAAPL*FTLEGISLDCK Trigger: TTTGCAATCCAAAGAGATGCCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGCGGTGGGCGGGGCCCAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR GCA 90 bp | CAGCATTCTAAGACATGCAGTGGTGTGCTAGTACCATACACACAACACACACTGTCGGCCGCCGCTCGCTaGTGCTGCGGTAGAGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: QHSKTCSGVLVPYTQHTLSAAAR*CCGRGA Trigger: CGCACCTCTACCGCAGCAGCAGCGAGCGGCGGCCGA...CAGTGTGTGTTGTGTGTATGGTACTAGCACACCACTGCATGTCTTAGAATGCTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CCA 90 bp | TGTGTACACTCAATATGCACACCCAGTGACACAGACACAGACCAGATGGGGTGGGGCCTGTCGTCATCCTaGGGTAGCTTGCTCTCCCGC | + |
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Preference number: 4 (lower is better) Translates to: CVHSICTPSDTDTDQMGWGLSSS*GSLLSR Trigger: GCGGGAGAGCAAGCTACCCCAGGATGACGACAGGCC...CCACCCCATCTGGTCTGTGTCTGTGTCACTGGGTGTGCATATTGAGTGTACACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR TCA 90 bp | CCTGACAACTGGAAAACAAAGAGATACAGGCCAGAGCTCCGCCCCACCTACCGCTGCTGTTGCCCAAGCTaGAGTACTTGTTCAGCCACT | + |
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Preference number: 4 (lower is better) Translates to: PDNWKTKRYRPELRPTYRCCCPS*STCSAT Trigger: AGTGGCTGAACAAGTACTTCAGCTTGGGCAACAGCA...GCGGTAGGTGGGGCGGAGCTCTGGCCTGTATCTCTTTGTTTTCCAGTTGTCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR TCA 90 bp | TATGACATGGTCTCTTTTGTGTACACTCAATATGCACACCCAGTGACACAGACACGCGGTAGGCGCGGATaGGGTCACTCGTGCTGCCGC | + |
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Preference number: 4 (lower is better) Translates to: YDMVSFVYTQYAHPVTQTRGRRG*GHSCCR Trigger: GCGGCAGCACGAGTGACCTCATCCGCGCCTACCGCG...TGTCTGTGTCACTGGGTGTGCATATTGAGTGTACACAAAAGAGACCATGTCATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR TCA 90 bp | CATGGTCTCTTTTGTGTACACTCAATATGCACACCCAGTGACACAGACACAGACAGTGCTCGGCCCCTTTaGTGGGCAGCTTCCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: HGLFCVHSICTPSDTDTDSARPL*WAASWW Trigger: CCACCAGGAAGCTGCCCATCAAAGGGGCCGAGCACT...GTCTGTGTCTGTGTCACTGGGTGTGCATATTGAGTGTACACAAAAGAGACCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR GCA 90 bp | TTCCTGACAACTGGAAAACAAAGAGATACAGGCCAGAGCTCCGCCCCACCTACCGCTCTCACCCTTTCCTaGTTTGCTCTTGAGGTCGCT | + |
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Preference number: 4 (lower is better) Translates to: FLTTGKQRDTGQSSAPPTALTLS*FALEVA Trigger: AGCGACCTCAAGAGCAAAGCAGGAAAGGGTGAGAGC...GGTAGGTGGGGCGGAGCTCTGGCCTGTATCTCTTTGTTTTCCAGTTGTCAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR GCA 90 bp | CAGCATTCTAAGACATGCAGTGGTGTGCTAGTACCATACACACAACACACACTGGCCGTTAAACTGGGCTaGCAGGGCGGGGATGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: QHSKTCSGVLVPYTQHTLAVKLG*QGGDGD Trigger: GTCACCATCCCCGCCCTGGCAGCCCAGTTTAACGGC...CAGTGTGTGTTGTGTGTATGGTACTAGCACACCACTGCATGTCTTAGAATGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CCA 90 bp | GCTGGAGCAGCTCCACTTTTGTTCACCCTGGAAGGCATCTCTTTGGATTGCAAATTCCATTCCCACGGCTaGTCGTACTCATCAGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: AGAAPLLFTLEGISLDCKFHSHG*SYSSAG Trigger: GCCTGCTGATGAGTACGACCAGCCGTGGGAATGGAA...TTTGCAATCCAAAGAGATGCCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CCA 90 bp | TCCTGGGCTCCCAGCACCAATGGGAAAAACCTTGCCCATACACAGGTGAGTTCCAGTAGTCATGTTTGCTaGTCTGGCTGTTCCGGACAA | + |
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Preference number: 4 (lower is better) Translates to: SWAPSTNGKNLAHTQVSSSSHVC*SGCSGQ Trigger: TTGTCCGGAACAGCCAGACCAGCAAACATGACTACT...GGAACTCACCTGTGTATGGGCAAGGTTTTTCCCATTGGTGCTGGGAGCCCAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR TCA 90 bp | CTAGTACCATACACACAACACACACTGGACACTGCTGGCAGCACAGACAGCTGGCCAGTTTCATGTGCATaGAGCCCTGGTTACTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: LVPYTQHTLDTAGSTDSWPVSCA*SPGYSS Trigger: TGAAGAGTAACCAGGGCTTCATGCACATGAAACTGG...CCAGCTGTCTGTGCTGCCAGCAGTGTCCAGTGTGTGTTGTGTGTATGGTACTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR GCA 90 bp | CCCTGTAAGTGGCGACAGCATTCTAAGACATGCAGTGGTGTGCTAGTACCATACTCCGGACAAGGTAGCTaGACTCCTTACAGAGTCGCA | + |
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Preference number: 4 (lower is better) Translates to: PCKWRQHSKTCSGVLVPYSGQGS*TPYRVA Trigger: TGCGACTCTGTAAGGAGTGCAGCTACCTTGTCCGGA...GTATGGTACTAGCACACCACTGCATGTCTTAGAATGCTGTCGCCACTTACAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CCA 90 bp | CGCTGGAGCAGCTCCACTTTTGTTCACCCTGGAAGGCATCTCTTTGGATTGCAAACGCTCTCTTGCCTCTaGAATTCTGTCATGATCCTC | + |
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Preference number: 4 (lower is better) Translates to: RWSSSTFVHPGRHLFGLQTLSCL*NSVMIL Trigger: GAGGATCATGACAGAATTCCAGAGGCAAGAGAGCGT...TTGCAATCCAAAGAGATGCCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CCA 90 bp | CCTCTTCATCCAGGCCTTCTCCAACCCTGTAAGTGGCGACAGCATTCTAAGACATATCTGTTTCTCCAGTaGGATGGTGGGATCCACTCT | + |
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Preference number: 4 (lower is better) Translates to: PLHPGLLQPCKWRQHSKTYLFLQ*DGGIHS Trigger: AGAGTGGATCCCACCATCCCACTGGAGAAACAGATA...TGTCTTAGAATGCTGTCGCCACTTACAGGGTTGGAGAAGGCCTGGATGAAGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR TCA 90 bp | CAGCATTCTAAGACATGCAGTGGTGTGCTAGTACCATACACACAACACACACTGTTCCTGCTTTGCTCTTaGGGTCGCTCTTGGCATCAA | + |
|
Preference number: 4 (lower is better) Translates to: QHSKTCSGVLVPYTQHTLFLLCS*GRSWHQ Trigger: TTGATGCCAAGAGCGACCTCAAGAGCAAAGCAGGAA...CAGTGTGTGTTGTGTGTATGGTACTAGCACACCACTGCATGTCTTAGAATGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR GCA 90 bp | TATGACATGGTCTCTTTTGTGTACACTCAATATGCACACCCAGTGACACAGACAGGGAGTAGTCATGTTTaGTGGTCTGGCTGTTCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: YDMVSFVYTQYAHPVTQTGSSHV*WSGCSG Trigger: TCCGGAACAGCCAGACCAGCAAACATGACTACTCCC...TGTCTGTGTCACTGGGTGTGCATATTGAGTGTACACAAAAGAGACCATGTCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CCA 90 bp | TGGTGTGCTAGTACCATACACACAACACACACTGGACACTGCTGGCAGCACAGAAGTAGTCATCAGCTATaGTCACCTTATCTTTCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: WCASTIHTTHTGHCWQHRSSHQL*SPYLSD Trigger: GTCAGAAAGATAAGGTGACCATAGCTGATGACTACT...TCTGTGCTGCCAGCAGTGTCCAGTGTGTGTTGTGTGTATGGTACTAGCACACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CCA 90 bp | GAAAAACCTTGCCCATACACAGGTGAGTTCCTGACAACTGGAAAACAAAGAGATGAACATACTTCTCTTTaGTCTTGGCCAGTTTCATGT | + |
|
Preference number: 4 (lower is better) Translates to: EKPCPYTGEFLTTGKQRDEHTSL*SWPVSC Trigger: ACATGAAACTGGCCAAGACCAAAGAGAAGTATGTTC...ATCTCTTTGTTTTCCAGTTGTCAGGAACTCACCTGTGTATGGGCAAGGTTTTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS GCA 90 bp | TGTAGCGCACCTCCGCCGGCGTCGTCGGCCGCCGCTCGCTGCTGCTaGGGTAGAGGTGCGGGGAGCCGGAGGATGAGGACGAGGACGCGG | + |
|
Preference number: 5 (lower is better) Translates to: CSAPPPASSAAARCC*GRGAGSRRMRTRTR Trigger: CCGCGTCCTCGTCCTCATCCTCCGGCTCCCCGCACCTCTACCGCAGCAGCAGCGAGCGGCGGCCGACGACGCCGGCGGAGGTGCGCTACA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS GCA 90 bp | GGGAGATGTAGCGCACCTCCGCCGGCGTCGTCGGCCGCCGCTCGCTaGTGCTGCGGTAGAGGTGCGGGGAGCCGGAGGATGAGGACGAGG | + |
|
Preference number: 5 (lower is better) Translates to: GRCSAPPPASSAAAR*CCGRGAGSRRMRTR Trigger: CCTCGTCCTCATCCTCCGGCTCCCCGCACCTCTACCGCAGCAGCAGCGAGCGGCGGCCGACGACGCCGGCGGAGGTGCGCTACATCTCCC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS GCA 90 bp | AGATGTAGCGCACCTCCGCCGGCGTCGTCGGCCGCCGCTCGCTGCTaGTGCGGTAGAGGTGCGGGGAGCCGGAGGATGAGGACGAGGACG | + |
|
Preference number: 5 (lower is better) Translates to: RCSAPPPASSAAARC*CGRGAGSRRMRTRT Trigger: CGTCCTCGTCCTCATCCTCCGGCTCCCCGCACCTCTACCGCAGCAGCAGCGAGCGGCGGCCGACGACGCCGGCGGAGGTGCGCTACATCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS CCA 90 bp | CTCCCGTGCTTGATGGGCTTGAAGCCTCCTCCCGGGGCACGGAGCTaGCGCCGTCGGTCCCGAGAAGGTGATGGGGAGGACTGCCGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: LPCLMGLKPPPGARS*RRRSREGDGEDCRF Trigger: AAAGCGGCAGTCCTCCCCATCACCTTCTCGGGACCGACGGCGCCAGCTCCGTGCCCCGGGAGGAGGCTTCAAGCCCATCAAGCACGGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CAA 90 bp | CACCCACTGCTGGGCCCCGCCCACCGCTGGAGCAGCTCCACTTTTGTTCACCCTGACGAGCCCGGCCCGTaGTACGGGTCCTCGAAGTCG | + |
|
Preference number: 5 (lower is better) Translates to: HPLLGPAHRWSSSTFVHPDEPGP*YGSSKS Trigger: CGACTTCGAGGACCCGTACAACGGGCCGGGCTCGTC...AGGGTGAACAAAAGTGGAGCTGCTCCAGCGGTGGGCGGGGCCCAGCAGTGGGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CAA 90 bp | TACAGGCCAGAGCTCCGCCCCACCTACCGCTGGGCCCCACCCACTGCTGGGCCCGACTGCCGCTTTTCATaGCCGTTAAACTGGGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: YRPELRPTYRWAPPTAGPDCRFS*PLNWAA Trigger: GGCAGCCCAGTTTAACGGCAATGAAAAGCGGCAGTC...GGGCCCAGCAGTGGGTGGGGCCCAGCGGTAGGTGGGGCGGAGCTCTGGCCTGTA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS CCA 90 bp | TGGGCTGCCAGGGCGGGGATGGTGACCCGGTTCCATTCCCACGGCTaGTCGTACTCATCAGCAGGCCTGTCGTCATCCTGGGGTAGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: WAARAGMVTRFHSHG*SYSSAGLSSSWGSL Trigger: CAAGCTACCCCAGGATGACGACAGGCCTGCTGATGAGTACGACCAGCCGTGGGAATGGAACCGGGTCACCATCCCCGCCCTGGCAGCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS GCA 90 bp | CGTCATCCTGGGGTAGCTTGCTCTCCCGCAGCCGAAGGCTCACAGTaGTCTCTGAGTCTGAGTCCACGCTCTGGCCTTCCGGCTCGTACG | + |
|
Preference number: 5 (lower is better) Translates to: RHPGVACSPAAEGSQ*SLSLSPRSGLPART Trigger: CGTACGAGCCGGAAGGCCAGAGCGTGGACTCAGACTCAGAGAGCACTGTGAGCCTTCGGCTGCGGGAGAGCAAGCTACCCCAGGATGACG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
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| CDS-3UTR CAA 90 bp | CTGCTGGGCCCCGCCCACCGCTGGAGCAGCTCCACTTTTGTTCACCCTGGAAGGGGCGGACTCTTAGTCTaGCTGTTGCCCAAGCTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LLGPAHRWSSSTFVHPGRGGLLV*LLPKLK Trigger: CTTCAGCTTGGGCAACAGCAAGACTAAGAGTCCGCC...CCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGCGGTGGGCGGGGCCCAGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS CCA 90 bp | CGCAGCCGAAGGCTCACAGTGCTCTCTGAGTCTGAGTCCACGCTCTaGCCTTCCGGCTCGTACGGGGTGTCGTACAACTGGATGCCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: RSRRLTVLSESESTL*PSGSYGVSYNWMPL Trigger: CAAAGGCATCCAGTTGTACGACACCCCGTACGAGCCGGAAGGCCAGAGCGTGGACTCAGACTCAGAGAGCACTGTGAGCCTTCGGCTGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
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| CDS CCA 90 bp | CATTCCCACGGCTGGTCGTACTCATCAGCAGGCCTGTCGTCATCCTaGGGTAGCTTGCTCTCCCGCAGCCGAAGGCTCACAGTGCTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: HSHGWSYSSAGLSSS*GSLLSRSRRLTVLS Trigger: AGAGAGCACTGTGAGCCTTCGGCTGCGGGAGAGCAAGCTACCCCAGGATGACGACAGGCCTGCTGATGAGTACGACCAGCCGTGGGAATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
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| CDS-3UTR CAA 90 bp | CACCCACTGCTGGGCCCCGCCCACCGCTGGAGCAGCTCCACTTTTGTTCACCCTTCACCCTTTCCTGCTTaGCTCTTGAGGTCGCTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: HPLLGPAHRWSSSTFVHPSPFPA*LLRSLL Trigger: CAAGAGCGACCTCAAGAGCAAAGCAGGAAAGGGTGA...AGGGTGAACAAAAGTGGAGCTGCTCCAGCGGTGGGCGGGGCCCAGCAGTGGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS GCA 90 bp | GCTGGTCGTACTCATCAGCAGGCCTGTCGTCATCCTGGGGTAGCTTaGTCTCCCGCAGCCGAAGGCTCACAGTGCTCTCTGAGTCTGAGT | + |
|
Preference number: 5 (lower is better) Translates to: AGRTHQQACRHPGVA*SPAAEGSQCSLSLS Trigger: ACTCAGACTCAGAGAGCACTGTGAGCCTTCGGCTGCGGGAGAGCAAGCTACCCCAGGATGACGACAGGCCTGCTGATGAGTACGACCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
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| CDS-3UTR CAA 90 bp | CCCTGTAAGTGGCGACAGCATTCTAAGACATGCAGTGGTGTGCTAGTACCATACCACATAGCTCGCAGTTaGCGCAGCGACGAGCCCGGC | + |
|
Preference number: 5 (lower is better) Translates to: PCKWRQHSKTCSGVLVPYHIARS*RSDEPG Trigger: GCCGGGCTCGTCGCTGCGCAAACTGCGAGCTATGTG...GTATGGTACTAGCACACCACTGCATGTCTTAGAATGCTGTCGCCACTTACAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CAA 90 bp | CCTCTTCATCCAGGCCTTCTCCAACCCTGTAAGTGGCGACAGCATTCTAAGACATCATCCTGGGGTAGCTaGCTCTCCCGCAGCCGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: PLHPGLLQPCKWRQHSKTSSWGS*LSRSRR Trigger: CCTTCGGCTGCGGGAGAGCAAGCTACCCCAGGATGA...TGTCTTAGAATGCTGTCGCCACTTACAGGGTTGGAGAAGGCCTGGATGAAGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CAA 90 bp | GGTGAGTTCCTGACAACTGGAAAACAAAGAGATACAGGCCAGAGCTCCGCCCCACTCGCGCTCTCCACTTaGATGAGTCGGTGCTTAGGG | + |
|
Preference number: 5 (lower is better) Translates to: GEFLTTGKQRDTGQSSAPLALST*MSRCLG Trigger: CCCTAAGCACCGACTCATCAAAGTGGAGAGCGCGAG...TGGGGCGGAGCTCTGGCCTGTATCTCTTTGTTTTCCAGTTGTCAGGAACTCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS TCA 90 bp | AGGGCTCCATGTAGCCAGCGCTCTCACCCTTTCCTGCTTTGCTCTTaGGGTCGCTCTTGGCATCAAAGGGATCGGAGTAGTCATCAGCTA | + |
|
Preference number: 5 (lower is better) Translates to: RAPCSQRSHPFLLCS*GRSWHQRDRSSHQL Trigger: TAGCTGATGACTACTCCGATCCCTTTGATGCCAAGAGCGACCTCAAGAGCAAAGCAGGAAAGGGTGAGAGCGCTGGCTACATGGAGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 ENSMUST00000147448.2 |
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| CDS-3UTR CAA 90 bp | CCAGGCCTTCTCCAACCCTGTAAGTGGCGACAGCATTCTAAGACATGCAGTGGTTTGTTGAGCAGTTTTTaGCCTCCGCAGGTCGTCGGG | + |
|
Preference number: 5 (lower is better) Translates to: PGLLQPCKWRQHSKTCSGLLSSF*PPQVVG Trigger: CCCGACGACCTGCGGAGGCAAAAAACTGCTCAACAA...ACCACTGCATGTCTTAGAATGCTGTCGCCACTTACAGGGTTGGAGAAGGCCTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CAA 90 bp | GCTGGAGCAGCTCCACTTTTGTTCACCCTGGAAGGCATCTCTTTGGATTGCAAAAAGTGCTCGGCCCCTTaGATGGGCAGCTTCCTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: AGAAPLLFTLEGISLDCKKCSAP*MGSFLV Trigger: CACCAGGAAGCTGCCCATCAAAGGGGCCGAGCACTT...TTTGCAATCCAAAGAGATGCCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS CCA 90 bp | ATCACTTCTGCTGATGGCCCCGTGATACCATATCTGTTTCTCCAGTaGGATGGTGGGATCCACTCTCTCCCCCAGAATCCCACAGAACTC | + |
|
Preference number: 5 (lower is better) Translates to: ITSADGPVIPYLFLQ*DGGIHSLPQNPTEL Trigger: GAGTTCTGTGGGATTCTGGGGGAGAGAGTGGATCCCACCATCCCACTGGAGAAACAGATATGGTATCACGGGGCCATCAGCAGAAGTGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CAA 90 bp | CCATACACACAACACACACTGGACACTGCTGGCAGCACAGACAGCTGGTCGGTGCTCTTAGTCTTGCTGTaGCCCAAGCTGAAGTACTTG | + |
|
Preference number: 5 (lower is better) Translates to: PYTQHTLDTAGSTDSWSVLLVLL*PKLKYL Trigger: CAAGTACTTCAGCTTGGGCAACAGCAAGACTAAGAG...CACCGACCAGCTGTCTGTGCTGCCAGCAGTGTCCAGTGTGTGTTGTGTGTATGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CAA 90 bp | GCTGGAGCAGCTCCACTTTTGTTCACCCTGGAAGGCATCTCTTTGGATTGCAAATTTCCTGCTTTGCTCTaGAGGTCGCTCTTGGCATCA | + |
|
Preference number: 5 (lower is better) Translates to: AGAAPLLFTLEGISLDCKFPALL*RSLLAS Trigger: TGATGCCAAGAGCGACCTCAAGAGCAAAGCAGGAAA...TTTGCAATCCAAAGAGATGCCTTCCAGGGTGAACAAAAGTGGAGCTGCTCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS-3UTR CAA 90 bp | GGTGAGTTCCTGACAACTGGAAAACAAAGAGATACAGGCCAGAGCTCCGCCCCATACTTCTCTTTGGTCTaGGCCAGTTTCATGTGCATG | + |
|
Preference number: 5 (lower is better) Translates to: GEFLTTGKQRDTGQSSAPYFSLV*ASFMCM Trigger: CATGCACATGAAACTGGCCAAGACCAAAGAGAAGTA...TGGGGCGGAGCTCTGGCCTGTATCTCTTTGTTTTCCAGTTGTCAGGAACTCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
||
| CDS-3UTR CAA 90 bp | CTAGTACCATACACACAACACACACTGGACACTGCTGGCAGCACAGACAGCTGGAGAACATACTTCTCTTaGGTCTTGGCCAGTTTCATG | + |
|
Preference number: 5 (lower is better) Translates to: LVPYTQHTLDTAGSTDSWRTYFS*VLASFM Trigger: CATGAAACTGGCCAAGACCAAAGAGAAGTATGTTCT...CCAGCTGTCTGTGCTGCCAGCAGTGTCCAGTGTGTGTTGTGTGTATGGTACTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS GCA 72 bp | GCCGACCCACAGGACGCCGAGGACGCCGAGCAGGCCTaGGGCACGGCCTGCGGGGGCTGCTCTCGTCGCTCG | + |
|
Preference number: 6 (lower is better) Translates to: ADPQDAEDAEQA*GTACGGCSRRS Trigger: CGAGCGACGAGAGCAGCCCCCGCAGGCCGTGCCGCAGGCCTGCTCGGCGTCCTCGGCGTCCTGTGGGTCGGC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS GCA 72 bp | CCTCCGCCGGCGTCGTCGGCCGCCGCTCGCTGCTGCTaGGGTAGAGGTGCGGGGAGCCGGAGGATGAGGACG | + |
|
Preference number: 6 (lower is better) Translates to: PPPASSAAARCC*GRGAGSRRMRT Trigger: CGTCCTCATCCTCCGGCTCCCCGCACCTCTACCGCAGCAGCAGCGAGCGGCGGCCGACGACGCCGGCGGAGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS GCA 72 bp | GCACCTCCGCCGGCGTCGTCGGCCGCCGCTCGCTGCTaGTGCGGTAGAGGTGCGGGGAGCCGGAGGATGAGG | + |
|
Preference number: 6 (lower is better) Translates to: APPPASSAAARC*CGRGAGSRRMR Trigger: CCTCATCCTCCGGCTCCCCGCACCTCTACCGCAGCAGCAGCGAGCGGCGGCCGACGACGCCGGCGGAGGTGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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| CDS GCA 72 bp | AGCGCACCTCCGCCGGCGTCGTCGGCCGCCGCTCGCTaGTGCTGCGGTAGAGGTGCGGGGAGCCGGAGGATG | + |
|
Preference number: 6 (lower is better) Translates to: SAPPPASSAAAR*CCGRGAGSRRM Trigger: CATCCTCCGGCTCCCCGCACCTCTACCGCAGCAGCAGCGAGCGGCGGCCGACGACGCCGGCGGAGGTGCGCT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
||
| CDS CCA 72 bp | TTGATGGGCTTGAAGCCTCCTCCCGGGGCACGGAGCTaGCGCCGTCGGTCCCGAGAAGGTGATGGGGAGGAC | + |
|
Preference number: 6 (lower is better) Translates to: LMGLKPPPGARS*RRRSREGDGED Trigger: GTCCTCCCCATCACCTTCTCGGGACCGACGGCGCCAGCTCCGTGCCCCGGGAGGAGGCTTCAAGCCCATCAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
||
| CDS CAA 72 bp | CCGGTCTCCTCGGCGGAGCACTTGTTGAGCAGTTTTTaGCCTCCGCAGGTCGTCGGGCTCCAGGTACGGCCG | + |
|
Preference number: 6 (lower is better) Translates to: PVSSAEHLLSSF*PPQVVGLQVRP Trigger: CGGCCGTACCTGGAGCCCGACGACCTGCGGAGGCAAAAAACTGCTCAACAAGTGCTCCGCCGAGGAGACCGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
||
| CDS GCA 72 bp | GGGGTAGCTTGCTCTCCCGCAGCCGAAGGCTCACAGTaGTCTCTGAGTCTGAGTCCACGCTCTGGCCTTCCG | + |
|
Preference number: 6 (lower is better) Translates to: GVACSPAAEGSQ*SLSLSPRSGLP Trigger: CGGAAGGCCAGAGCGTGGACTCAGACTCAGAGAGCACTGTGAGCCTTCGGCTGCGGGAGAGCAAGCTACCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
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| CDS CCA 72 bp | AGGGCGGGGATGGTGACCCGGTTCCATTCCCACGGCTaGTCGTACTCATCAGCAGGCCTGTCGTCATCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: RAGMVTRFHSHG*SYSSAGLSSSW Trigger: CCAGGATGACGACAGGCCTGCTGATGAGTACGACCAGCCGTGGGAATGGAACCGGGTCACCATCCCCGCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
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| CDS GCA 72 bp | TGGCGCCGTCGGTCCCGAGAAGGTGATGGGGAGGACTaGCGCTTTTCATTGCCGTTAAACTGGGCTGCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: WRRRSREGDGED*RFSLPLNWAAR Trigger: CCTGGCAGCCCAGTTTAACGGCAATGAAAAGCGGCAGTCCTCCCCATCACCTTCTCGGGACCGACGGCGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
||
| CDS CCA 72 bp | GGCTGGTCGTACTCATCAGCAGGCCTGTCGTCATCCTaGGGTAGCTTGCTCTCCCGCAGCCGAAGGCTCACA | + |
|
Preference number: 6 (lower is better) Translates to: GWSYSSAGLSSS*GSLLSRSRRLT Trigger: TGTGAGCCTTCGGCTGCGGGAGAGCAAGCTACCCCAGGATGACGACAGGCCTGCTGATGAGTACGACCAGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
||
| CDS CAA 90 bp | GGCTGGTCGTACTCATCAGCAGGCCTGTCGTCATCCTGGGGTAGCTaGCTCTCCCGCAGCCGAAGGCTCACAGTGCTCTCTGAGTCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: GWSYSSAGLSSSWGS*LSRSRRLTVLSESE Trigger: CTCAGACTCAGAGAGCACTGTGAGCCTTCGGCTGCGGGAGAGCAAGCTACCCCAGGATGACGACAGGCCTGCTGATGAGTACGACCAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
||
| CDS GCA 72 bp | ACTCATCAGCAGGCCTGTCGTCATCCTGGGGTAGCTTaGTCTCCCGCAGCCGAAGGCTCACAGTGCTCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: THQQACRHPGVA*SPAAEGSQCSL Trigger: CAGAGAGCACTGTGAGCCTTCGGCTGCGGGAGAGCAAGCTACCCCAGGATGACGACAGGCCTGCTGATGAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
||
| CDS CCA 72 bp | AGGCTCACAGTGCTCTCTGAGTCTGAGTCCACGCTCTaGCCTTCCGGCTCGTACGGGGTGTCGTACAACTGG | + |
|
Preference number: 6 (lower is better) Translates to: RLTVLSESESTL*PSGSYGVSYNW Trigger: CCAGTTGTACGACACCCCGTACGAGCCGGAAGGCCAGAGCGTGGACTCAGACTCAGAGAGCACTGTGAGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
||
| CDS CAA 72 bp | TACTCATCAGCAGGCCTGTCGTCATCCTGGGGTAGCTaGCTCTCCCGCAGCCGAAGGCTCACAGTGCTCTCT | + |
|
Preference number: 6 (lower is better) Translates to: YSSAGLSSSWGS*LSRSRRLTVLS Trigger: AGAGAGCACTGTGAGCCTTCGGCTGCGGGAGAGCAAGCTACCCCAGGATGACGACAGGCCTGCTGATGAGTA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 |
||
| CDS GCA 72 bp | GTAGGGCTCCATGTAGCCAGCGCTCTCACCCTTTCCTaGTTTGCTCTTGAGGTCGCTCTTGGCATCAAAGGG | + |
|
Preference number: 6 (lower is better) Translates to: VGLHVASALTLS*FALEVALGIKG Trigger: CCCTTTGATGCCAAGAGCGACCTCAAGAGCAAAGCAGGAAAGGGTGAGAGCGCTGGCTACATGGAGCCCTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 ENSMUST00000147448.2 |
||
| CDS CCA 72 bp | GCTGATGGCCCCGTGATACCATATCTGTTTCTCCAGTaGGATGGTGGGATCCACTCTCTCCCCCAGAATCCC | + |
|
Preference number: 6 (lower is better) Translates to: ADGPVIPYLFLQ*DGGIHSLPQNP Trigger: GGGATTCTGGGGGAGAGAGTGGATCCCACCATCCCACTGGAGAAACAGATATGGTATCACGGGGCCATCAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
||
| CDS CCA 72 bp | TGGCCCCGTGATACCATATCTGTTTCTCCAGTGGGATaGTGGGATCCACTCTCTCCCCCAGAATCCCACAGA | + |
|
Preference number: 6 (lower is better) Translates to: WPRDTISVSPVG*WDPLSPPESHR Trigger: TCTGTGGGATTCTGGGGGAGAGAGTGGATCCCACCATCCCACTGGAGAAACAGATATGGTATCACGGGGCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
||
| CDS TCA 72 bp | TGTAGCCAGCGCTCTCACCCTTTCCTGCTTTGCTCTTaGGGTCGCTCTTGGCATCAAAGGGATCGGAGTAGT | + |
|
Preference number: 6 (lower is better) Translates to: CSQRSHPFLLCS*GRSWHQRDRSS Trigger: ACTACTCCGATCCCTTTGATGCCAAGAGCGACCTCAAGAGCAAAGCAGGAAAGGGTGAGAGCGCTGGCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000061986.12 ENSMUST00000146236.8 ENSMUST00000147448.2 |
||
| CDS TCA 72 bp | CATACTTCTCTTTGGTCTTGGCCAGTTTCATGTGCATaGAGCCCTGGTTACTCTTCAGGGAGAGGGAGTAGT | + |
|
Preference number: 6 (lower is better) Translates to: HTSLWSWPVSCA*SPGYSSGRGSS Trigger: ACTACTCCCTCTCCCTGAAGAGTAACCAGGGCTTCATGCACATGAAACTGGCCAAGACCAAAGAGAAGTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061986.12 |
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