Pregenerated sensors for SHARPIN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022552Ensembl transcript IDs: ENSMUST00000023211.16, ENSMUST00000159429.2, ENSMUST00000160560.2, ENSMUST00000230314.2
Found 130 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GATGAAAGTGCAGGAAGGGCAAGACCAGCCAGGCTGAGAGGGACTTaGGAGACTGGAACTGGACGGCTGGAGGTCATGAGGCAGCCCCAG | + |
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Preference number: 1 (lower is better) Translates to: DESAGRARPARLRGT*ETGTGRLEVMRQPQ Trigger: CTGGGGCTGCCTCATGACCTCCAGCCGTCCAGTTCCAGTCTCCCAAGTCCCTCTCAGCCTGGCTGGTCTTGCCCTTCCTGCACTTTCATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR CCA 90 bp | AAGGGCAAGACCAGCCAGGCTGAGAGGGACTTGGGAGACTGGAACTaGACGGCTGGAGGTCATGAGGCAGCCCCAGTGACTGAGGAAACA | + |
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Preference number: 1 (lower is better) Translates to: KGKTSQAERDLGDWN*TAGGHEAAPVTEET Trigger: TGTTTCCTCAGTCACTGGGGCTGCCTCATGACCTCCAGCCGTCCAGTTCCAGTCTCCCAAGTCCCTCTCAGCCTGGCTGGTCTTGCCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR TCA 90 bp | CCGCCCAATGACCCAGCGCTGCACAGCTGGTGGGAAACCGAACTCTaGGAACACCTGATCCTGAAGGGCTGCAATGGAGCAATGTGGGTG | + |
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Preference number: 1 (lower is better) Translates to: PPNDPALHSWWETEL*EHLILKGCNGAMWV Trigger: CACCCACATTGCTCCATTGCAGCCCTTCAGGATCAGGTGTTCTCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGGGCGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR GCA 90 bp | AGGCTTCGTTCAGGCATACACAGGCACCGCCCAATGACCCAGCGCTaGACAGCTGGTGGGAAACCGAACTCTGATCCTGAAGGGCTGCAA | + |
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Preference number: 1 (lower is better) Translates to: RLRSGIHRHRPMTQR*TAGGKPNSDPEGLQ Trigger: TTGCAGCCCTTCAGGATCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGTGTATGCCTGAACGAAGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160560.2 |
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| 3UTR TCA 90 bp | CATAGGAAGCAAGGCTTCGTTCAGGCATACACAGGCACCGCCCAATaGCCCAGCGCTGCACAGCTGGTGGGAAACCGAACTCTGATCCTG | + |
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Preference number: 1 (lower is better) Translates to: HRKQGFVQAYTGTAQ*PSAAQLVGNRTLIL Trigger: CAGGATCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGTGTATGCCTGAACGAAGCCTTGCTTCCTATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160560.2 |
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| 3UTR TCA 90 bp | CATAGGAAGCAAGGCTTCGTTCAGGCATACACAGGCACCGCCCAATaGCCCAGCGCTGCACAGCTGGTGGGAAACCGAACTCTGAGAACA | + |
|
Preference number: 1 (lower is better) Translates to: HRKQGFVQAYTGTAQ*PSAAQLVGNRTLRT Trigger: TGTTCTCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGTGTATGCCTGAACGAAGCCTTGCTTCCTATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR CCA 90 bp | TCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTaGGCCTGTGACAGGAGGGCCATATTCTCTGTAACCTTTGGTGGC | + |
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Preference number: 1 (lower is better) Translates to: SPTSISPLQSSSGGG*ACDRRAIFSVTFGG Trigger: GCCACCAAAGGTTACAGAGAATATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| 3UTR CCA 90 bp | GTGGGAAACCGAACTCTGAGAACACCTGATCCTGAAGGGCTGCAATaGAGCAATGTGGGTGGATCTTCAGTGAGACATGGGCAGACGATG | + |
|
Preference number: 1 (lower is better) Translates to: VGNRTLRTPDPEGLQ*SNVGGSSVRHGQTM Trigger: CATCGTCTGCCCATGTCTCACTGAAGATCCACCCACATTGCTCCATTGCAGCCCTTCAGGATCAGGTGTTCTCAGAGTTCGGTTTCCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR TCA 90 bp | AAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTaGCAGGAGGGCCATATTCTCTGTAACCTGAGGAAAAAGATAGGT | + |
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Preference number: 1 (lower is better) Translates to: KHQSPAKFKWWWLGL*QEGHILCNLRKKIG Trigger: ACCTATCTTTTTCCTCAGGTTACAGAGAATATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159429.2 ENSMUST00000230314.2 |
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| 3UTR-3UTR TCA 90 bp | AGGAAGGGCAAGACCAGCCAGGCTGAGAGGGACTTGGGAGACTGGAACTGGACGTGGTGGTTGGGCCTGTaGCAGGAGGGCCATATTCTC | + |
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Preference number: 2 (lower is better) Translates to: RKGKTSQAERDLGDWNWTWWLGL*QEGHIL Trigger: GAGAATATGGCCCTCCTGTCACAGGCCCAACCACCA...CGTCCAGTTCCAGTCTCCCAAGTCCCTCTCAGCCTGGCTGGTCTTGCCCTTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR-3UTR GCA 90 bp | TCGTTCAGGCATACACAGGCACCGCCCAATGACCCAGCGCTGCACAGCTGGTGGCTGATCCTGAAGGGCTaGAATGGAGCAATGTGGGTG | + |
|
Preference number: 2 (lower is better) Translates to: SFRHTQAPPNDPALHSWWLILKG*NGAMWV Trigger: CACCCACATTGCTCCATTGCAGCCCTTCAGGATCAG...CCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGTGTATGCCTGAACGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| 3UTR-3UTR CCA 90 bp | TCGTTCAGGCATACACAGGCACCGCCCAATGACCCAGCGCTGCACAGCTGGTGGCCTGAAGGGCTGCAATaGAGCAATGTGGGTGGATCT | + |
|
Preference number: 2 (lower is better) Translates to: SFRHTQAPPNDPALHSWWPEGLQ*SNVGGS Trigger: AGATCCACCCACATTGCTCCATTGCAGCCCTTCAGG...CCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGTGTATGCCTGAACGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| 3UTR-3UTR TCA 90 bp | CAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGATGGTGGTTGGGCCTGTaGCAGGAGGGCCATATTCTC | + |
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Preference number: 2 (lower is better) Translates to: QASVPCKVQVVVVGPVTGWWLGL*QEGHIL Trigger: GAGAATATGGCCCTCCTGTCACAGGCCCAACCACCA...TCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 ENSMUST00000230314.2 |
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| 3UTR-3UTR TCA 90 bp | TTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTTGGGCCTGTaGCAGGAGGGCCATATTCTC | + |
|
Preference number: 2 (lower is better) Translates to: FNTGISVPNKHQSPAKFKWWLGL*QEGHIL Trigger: GAGAATATGGCCCTCCTGTCACAGGCCCAACCACCA...CTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 ENSMUST00000230314.2 |
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| 3UTR-3UTR CCA 90 bp | ATCTTGAGAGACCCCATAGGAAGCAAGGCTTCGTTCAGGCATACACAGGCACCGATCTTCAGTGAGACATaGGCAGACGATGAAGAGGAC | + |
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Preference number: 2 (lower is better) Translates to: ILRDPIGSKASFRHTQAPIFSET*ADDEED Trigger: GTCCTCTTCATCGTCTGCCCATGTCTCACTGAAGAT...CGGTGCCTGTGTATGCCTGAACGAAGCCTTGCTTCCTATGGGGTCTCTCAAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| 3UTR CCA 72 bp | GGCAAGACCAGCCAGGCTGAGAGGGACTTGGGAGACTaGAACTGGACGGCTGGAGGTCATGAGGCAGCCCCA | + |
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Preference number: 3 (lower is better) Translates to: GKTSQAERDLGD*NWTAGGHEAAP Trigger: TGGGGCTGCCTCATGACCTCCAGCCGTCCAGTTCCAGTCTCCCAAGTCCCTCTCAGCCTGGCTGGTCTTGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR CCA 72 bp | GCAGGAAGGGCAAGACCAGCCAGGCTGAGAGGGACTTaGGAGACTGGAACTGGACGGCTGGAGGTCATGAGG | + |
|
Preference number: 3 (lower is better) Translates to: AGRARPARLRGT*ETGTGRLEVMR Trigger: CCTCATGACCTCCAGCCGTCCAGTTCCAGTCTCCCAAGTCCCTCTCAGCCTGGCTGGTCTTGCCCTTCCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR TCA 72 bp | CAAGGCTTCGTTCAGGCATACACAGGCACCGCCCAATaGCCCAGCGCTGCACAGCTGGTGGGAAACCGAACT | + |
|
Preference number: 3 (lower is better) Translates to: QGFVQAYTGTAQ*PSAAQLVGNRT Trigger: AGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGTGTATGCCTGAACGAAGCCTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| 3UTR TCA 72 bp | GACCCAGCGCTGCACAGCTGGTGGGAAACCGAACTCTaGGAACACCTGATCCTGAAGGGCTGCAATGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: DPALHSWWETEL*EHLILKGCNGA Trigger: TGCTCCATTGCAGCCCTTCAGGATCAGGTGTTCTCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR GCA 72 bp | TCAGGCATACACAGGCACCGCCCAATGACCCAGCGCTaGACAGCTGGTGGGAAACCGAACTCTGATCCTGAA | + |
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Preference number: 3 (lower is better) Translates to: SGIHRHRPMTQR*TAGGKPNSDPE Trigger: TTCAGGATCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGTGTATGCCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160560.2 |
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| 3UTR GCA 72 bp | CTGCAGCAAGAGGATCCCAAGCACAGGGCCTTTGGGTaGTACACATCTCACAGCCAGGGCGGTTTGAGGCAT | + |
|
Preference number: 3 (lower is better) Translates to: LQQEDPKHRAFG*YTSHSQGGLRH Trigger: ATGCCTCAAACCGCCCTGGCTGTGAGATGTGTAGCACCCAAAGGCCCTGTGCTTGGGATCCTCTTGCTGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR CCA 72 bp | GAAGCTGCAGCAAGAGGATCCCAAGCACAGGGCCTTTaGGTGCTACACATCTCACAGCCAGGGCGGTTTGAG | + |
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Preference number: 3 (lower is better) Translates to: EAAARGSQAQGL*VLHISQPGRFE Trigger: CTCAAACCGCCCTGGCTGTGAGATGTGTAGCACCCAAAGGCCCTGTGCTTGGGATCCTCTTGCTGCAGCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR GCA 72 bp | CACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTaGAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACA | + |
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Preference number: 3 (lower is better) Translates to: HWHLCPQQASVP*KVQVVVVGPVT Trigger: TGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 ENSMUST00000230314.2 |
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| 3UTR GCA 72 bp | AGACTCTTGTACCTTTGGTGGCTTCTAGGTGGAAGCTaGAGCAAGAGGATCCCAAGCACAGGGCCTTTGGGT | + |
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Preference number: 3 (lower is better) Translates to: RLLYLWWLLGGS*SKRIPSTGPLG Trigger: ACCCAAAGGCCCTGTGCTTGGGATCCTCTTGCTGCAGCTTCCACCTAGAAGCCACCAAAGGTACAAGAGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| 3UTR CCA 72 bp | GCAATGGAGCAATGTGGGTGGATCTTCAGTGAGACATaGGCAGACGATGAAGAGGACAAAACCGATGTGGCG | + |
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Preference number: 3 (lower is better) Translates to: AMEQCGWIFSET*ADDEEDKTDVA Trigger: CGCCACATCGGTTTTGTCCTCTTCATCGTCTGCCCATGTCTCACTGAAGATCCACCCACATTGCTCCATTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| 3UTR CCA 72 bp | GTGACTGAGGAAACAAGCCTAATTTCCGGTCCATCTTaGAGTTTTGAAGGCTTTGTCCTGAAACTTCTCTGG | + |
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Preference number: 3 (lower is better) Translates to: VTEETSLISGPS*SFEGFVLKLLW Trigger: CCAGAGAAGTTTCAGGACAAAGCCTTCAAAACTCCAAGATGGACCGGAAATTAGGCTTGTTTCCTCAGTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| CDS-3UTR TCA 90 bp | TCGTTCAGGCATACACAGGCACCGCCCAATGACCCAGCGCTGCACAGCTGGTGGCAGCGCCCAGGGGCCTaGCCGCCGCGTGCACTGCCA | + |
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Preference number: 4 (lower is better) Translates to: SFRHTQAPPNDPALHSWWQRPGA*PPRALP Trigger: TGGCAGTGCACGCGGCGGTCAGGCCCCTGGGCGCTG...CCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGTGTATGCCTGAACGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS-3UTR TCA 90 bp | CCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAGGGCCATATTCCAGCGCCCAGGGGCCTaGCCGCCGCGTGCACTGCCA | + |
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Preference number: 4 (lower is better) Translates to: PLQSSSGGGWACDRRAIFQRPGA*PPRALP Trigger: TGGCAGTGCACGCGGCGGTCAGGCCCCTGGGCGCTG...GAATATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR GCA 90 bp | CGTTCAGGCATACACAGGCACCGCCCAATGACCCAGCGCTGCACAGCTGGTGGGATGCTGCGCCAGGACTaGTGCCACTTGGGCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RSGIHRHRPMTQRCTAGGMLRQD*CHLGRC Trigger: GCAGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCAT...CCCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGTGTATGCCTGAACG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS-3UTR GCA 90 bp | AGGAAGGGCAAGACCAGCCAGGCTGAGAGGGACTTGGGAGACTGGAACTGGACGGGCCTGACCGCCGCGTaGACTGCCAGGAGCACCACA | + |
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Preference number: 4 (lower is better) Translates to: RKGKTSQAERDLGDWNWTGLTAA*TARSTT Trigger: TGTGGTGCTCCTGGCAGTGCACGCGGCGGTCAGGCC...CGTCCAGTTCCAGTCTCCCAAGTCCCTCTCAGCCTGGCTGGTCTTGCCCTTCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| CDS-3UTR TCA 90 bp | TGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGCAGCGCCCAGGGGCCTaGCCGCCGCGTGCACTGCCA | + |
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Preference number: 4 (lower is better) Translates to: WHLCPQQASVPCKVQVVVQRPGA*PPRALP Trigger: TGGCAGTGCACGCGGCGGTCAGGCCCCTGGGCGCTG...CACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR GCA 90 bp | AGGCACCGCCCAATGACCCAGCGCTGCACAGCTGGTGGGAAACCGAACTCTGATTGCCACTTGGGCCGCTaGTTTCTCATCCCCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: RHRPMTQRCTAGGKPNSDCHLGR*FLIPTC Trigger: GCAGGTGGGGATGAGAAAGCAGCGGCCCAAGTGGCA...ATCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160560.2 |
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| CDS-3UTR GCA 90 bp | ACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGACCAGTGCTGCCCACTaGTGTGCTTCCTCGGGGTCG | + |
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Preference number: 4 (lower is better) Translates to: TSISPLQSSSGGGWACDRTSAAH*CASSGS Trigger: CGACCCCGAGGAAGCACAGCAGTGGGCAGCACTGGT...CCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS-3UTR GCA 90 bp | CACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGATGCTGCGCCAGGACTaGTGCCACTTGGGCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HWHLCPQQASVPCKVQVVMLRQD*CHLGRC Trigger: GCAGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCAT...CACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR GCA 90 bp | GTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGCCAATGACCCAGCGCTaGACAGCTGGTGGGAAACCG | + |
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Preference number: 4 (lower is better) Translates to: VPNKHQSPAKFKWWWLGLPMTQR*TAGGKP Trigger: CGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGG...CAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS-3UTR CCA 90 bp | ACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGCCACCTGCAATGGCCTaGGACAGGCGTGTAGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: TSISPLQSSSGGGWACDRPPAMA*DRRVAS Trigger: GCTGGCTACACGCCTGTCCCAGGCCATTGCAGGTGG...CCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR TCA 90 bp | CCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAACAGGCACCGCCCAATaGCCCAGCGCTGCACAGCTG | + |
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Preference number: 4 (lower is better) Translates to: PCCLTLASLSPTSISPLQTGTAQ*PSAAQL Trigger: CAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGT...TTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS-3UTR GCA 90 bp | AAGAAAAGCAGGGTCTCCATCTTGAGAGACCCCATAGGAAGCAAGGCTTCGTTCGGCCTGACCGCCGCGTaGACTGCCAGGAGCACCACA | + |
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Preference number: 4 (lower is better) Translates to: KKSRVSILRDPIGSKASFGLTAA*TARSTT Trigger: TGTGGTGCTCCTGGCAGTGCACGCGGCGGTCAGGCC...GAACGAAGCCTTGCTTCCTATGGGGTCTCTCAAGATGGAGACCCTGCTTTTCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS-3UTR GCA 90 bp | ACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGGGCATCTCGCACCAGTaGTGCCCACTGCTGTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: TSISPLQSSSGGGWACDRGISHQ*CPLLCF Trigger: GAAGCACAGCAGTGGGCAGCACTGGTGCGAGATGCC...CCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS-3UTR GCA 90 bp | CCCAGCGCTGCACAGCTGGTGGGAAACCGAACTCTGAGAACACCTGATCCTGAATTTCTCATCCCCACCTaGAATGGCCTGGGACAGGCG | + |
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Preference number: 4 (lower is better) Translates to: PSAAQLVGNRTLRTPDPEFLIPT*NGLGQA Trigger: CGCCTGTCCCAGGCCATTGCAGGTGGGGATGAGAAA...TTCAGGATCAGGTGTTCTCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| CDS-3UTR GCA 90 bp | ACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGTGCCACTTGGGCCGCTaGTTTCTCATCCCCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: TSISPLQSSSGGGWACDRCHLGR*FLIPTC Trigger: GCAGGTGGGGATGAGAAAGCAGCGGCCCAAGTGGCA...CCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR TCA 90 bp | TGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAGGGCCATATTCTCTGCGAGGAAGTGCACGCTaGAGGTTCCAGGACCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: CKVQVVVVGPVTGGPYSLRGSAR*RFQDLQ Trigger: CTGGAGGTCCTGGAACCTTCAGCGTGCACTTCCTCG...CAGAGAATATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS-3UTR TCA 90 bp | TGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAGGGCCATATTCTCTGCAAGACCAGCCAGGCTaGGAGGGACTTGGGAGACTG | + |
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Preference number: 4 (lower is better) Translates to: CKVQVVVVGPVTGGPYSLQDQPG*EGLGRL Trigger: CAGTCTCCCAAGTCCCTCTCAGCCTGGCTGGTCTTG...CAGAGAATATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
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| CDS-3UTR GCA 90 bp | GTATGTAGCCCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTGGCCTGACCGCCGCGTaGACTGCCAGGAGCACCACA | + |
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Preference number: 4 (lower is better) Translates to: VCSPCCLTLASLSPTSISGLTAA*TARSTT Trigger: TGTGGTGCTCCTGGCAGTGCACGCGGCGGTCAGGCC...ACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGGGCTACATAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR GCA 90 bp | GAGCAATGTGGGTGGATCTTCAGTGAGACATGGGCAGACGATGAAGAGGACAAAATGCTGCGCCAGGACTaGTGCCACTTGGGCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: EQCGWIFSETWADDEEDKMLRQD*CHLGRC Trigger: GCAGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCAT...TTTGTCCTCTTCATCGTCTGCCCATGTCTCACTGAAGATCCACCCACATTGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS-3UTR CCA 90 bp | GTGGGTGGATCTTCAGTGAGACATGGGCAGACGATGAAGAGGACAAAACCGATGCCACCTGCAATGGCCTaGGACAGGCGTGTAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: VGGSSVRHGQTMKRTKPMPPAMA*DRRVAS Trigger: GCTGGCTACACGCCTGTCCCAGGCCATTGCAGGTGG...CATCGGTTTTGTCCTCTTCATCGTCTGCCCATGTCTCACTGAAGATCCACCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS-3UTR CCA 90 bp | CCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAACCACCTGCAATGGCCTaGGACAGGCGTGTAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: PCCLTLASLSPTSISPLQPPAMA*DRRVAS Trigger: GCTGGCTACACGCCTGTCCCAGGCCATTGCAGGTGG...TTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
||
| 3UTR CAA 72 bp | GTGCTACACATCTCACAGCCAGGGCGGTTTGAGGCATaGATGAAAGTGCAGGAAGGGCAAGACCAGCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: VLHISQPGRFEA*MKVQEGQDQPG Trigger: GCCTGGCTGGTCTTGCCCTTCCTGCACTTTCATCAATGCCTCAAACCGCCCTGGCTGTGAGATGTGTAGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
||
| CDS-3UTR TCA 90 bp | GTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGACAGCCAGGGCGGTTTaGGGCATTGATGAAAGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: VPNKHQSPAKFKWWWLGLTARAV*GIDESA Trigger: TGCACTTTCATCAATGCCTCAAACCGCCCTGGCTGT...CAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
||
| CDS-3UTR GCA 90 bp | TGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGTTTCTCATCCCCACCTaGAATGGCCTGGGACAGGCG | + |
|
Preference number: 4 (lower is better) Translates to: WHLCPQQASVPCKVQVVVFLIPT*NGLGQA Trigger: CGCCTGTCCCAGGCCATTGCAGGTGGGGATGAGAAA...CACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
||
| CDS-3UTR GCA 90 bp | ACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTTGCCACTTGGGCCGCTaGTTTCTCATCCCCACCTGC | + |
|
Preference number: 4 (lower is better) Translates to: TLASLSPTSISPLQSSSGCHLGR*FLIPTC Trigger: GCAGGTGGGGATGAGAAAGCAGCGGCCCAAGTGGCA...ACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
||
| CDS-3UTR GCA 90 bp | CAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGACACAGGGCCTTTGGGTaGTACACATCTCACAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: QASVPCKVQVVVVGPVTGHRAFG*YTSHSQ Trigger: CTGGCTGTGAGATGTGTAGCACCCAAAGGCCCTGTG...TCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
||
| CDS-3UTR CCA 90 bp | GAGAGACCCCATAGGAAGCAAGGCTTCGTTCAGGCATACACAGGCACCGCCCAAAACATGGTGGAGAAATaGGGCACATTGCTGGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: ERPHRKQGFVQAYTGTAQNMVEK*GTLLGL Trigger: CAGCCCCAGCAATGTGCCCCATTTCTCCACCATGTT...TTGGGCGGTGCCTGTGTATGCCTGAACGAAGCCTTGCTTCCTATGGGGTCTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS-3UTR CCA 90 bp | AGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAGGGCCATACAAGCACAGGGCCTTTaGGTGCTACACATCTCACAG | + |
|
Preference number: 4 (lower is better) Translates to: SPLQSSSGGGWACDRRAIQAQGL*VLHISQ Trigger: CTGTGAGATGTGTAGCACCCAAAGGCCCTGTGCTTG...TATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
||
| CDS-3UTR GCA 90 bp | CCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAATCTCGCACCAGTGCTaGCCACTGCTGTGCTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: PCCLTLASLSPTSISPLQISHQC*PLLCFL Trigger: GAGGAAGCACAGCAGTGGGCAGCACTGGTGCGAGAT...TTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
||
| CDS-3UTR TCA 90 bp | TGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTCAAGACCAGCCAGGCTaGGAGGGACTTGGGAGACTG | + |
|
Preference number: 4 (lower is better) Translates to: CCLTLASLSPTSISPLQSQDQPG*EGLGRL Trigger: CAGTCTCCCAAGTCCCTCTCAGCCTGGCTGGTCTTG...ACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
||
| CDS-3UTR TCA 90 bp | CTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTACAGCCAGGGCGGTTTaGGGCATTGATGAAAGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: LASLSPTSISPLQSSSGGTARAV*GIDESA Trigger: TGCACTTTCATCAATGCCTCAAACCGCCCTGGCTGT...ACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
||
| CDS-3UTR GCA 90 bp | CAGCGCTGCACAGCTGGTGGGAAACCGAACTCTGATCCTGAAGGGCTGCAATGGCACCTCAGGTTGGGTTaGTTTAGGTATTTGAGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: QRCTAGGKPNSDPEGLQWHLRLG*FRYLSH Trigger: ATGGCTCAAATACCTAAAGCAACCCAACCTGAGGTG...CCATTGCAGCCCTTCAGGATCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160560.2 |
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| CDS-3UTR GCA 90 bp | CTGAAACTTCTCTGGGGGCCGAGAGCAAGTAAAGAAAAGCAGGGTCTCCATCTTTTTCTCATCCCCACCTaGAATGGCCTGGGACAGGCG | + |
|
Preference number: 4 (lower is better) Translates to: LKLLWGPRASKEKQGLHLFLIPT*NGLGQA Trigger: CGCCTGTCCCAGGCCATTGCAGGTGGGGATGAGAAA...AAGATGGAGACCCTGCTTTTCTTTACTTGCTCTCGGCCCCCAGAGAAGTTTCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS-3UTR GCA 90 bp | TGTAGCCCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCACAGGGCCTTTGGGTaGTACACATCTCACAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: CSPCCLTLASLSPTSISPHRAFG*YTSHSQ Trigger: CTGGCTGTGAGATGTGTAGCACCCAAAGGCCCTGTG...GGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGGGCTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
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| CDS-3UTR CCA 90 bp | AGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAGGGCCATATTCTCTGTAACCAACATGGTGGAGAAATaGGGCACATTGCTGGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SSSGGGWACDRRAIFSVTNMVEK*GTLLGL Trigger: CAGCCCCAGCAATGTGCCCCATTTCTCCACCATGTT...GGTTACAGAGAATATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
||
| CDS-3UTR CCA 90 bp | CGCCCAATGACCCAGCGCTGCACAGCTGGTGGGAAACCGAACTCTGATCCTGAAAGCCATAGAAGAACATaGTGGAGAAATGGGGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: RPMTQRCTAGGKPNSDPESHRRT*WRNGAH Trigger: ATGTGCCCCATTTCTCCACCATGTTCTTCTATGGCT...TTCAGGATCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGGGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160560.2 |
||
| CDS-3UTR CCA 90 bp | CTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTCAAGCACAGGGCCTTTaGGTGCTACACATCTCACAG | + |
|
Preference number: 4 (lower is better) Translates to: LASLSPTSISPLQSSSGGQAQGL*VLHISQ Trigger: CTGTGAGATGTGTAGCACCCAAAGGCCCTGTGCTTG...ACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
||
| 3UTR CAA 72 bp | GGCCGAGAGCAAGTAAAGAAAAGCAGGGTCTCCATCTaGAGAGACCCCATAGGAAGCAAGGCTTCGTTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: GREQVKKSRVSI*RDPIGSKASFR Trigger: CCTGAACGAAGCCTTGCTTCCTATGGGGTCTCTCAAGATGGAGACCCTGCTTTTCTTTACTTGCTCTCGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS-3UTR TCA 90 bp | GAGAGACCCCATAGGAAGCAAGGCTTCGTTCAGGCATACACAGGCACCGCCCAAAAGTTTCCAGAACTTTaGGGAAGATCCACCTCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: ERPHRKQGFVQAYTGTAQKFPEL*GRSTSG Trigger: ACCTGAGGTGGATCTTCCTCAAAGTTCTGGAAACTT...TTGGGCGGTGCCTGTGTATGCCTGAACGAAGCCTTGCTTCCTATGGGGTCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS-3UTR TCA 90 bp | ACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTTTGAAGGCTTTGTCCTaGAACTTCTCTGGGGGCCGN | + |
|
Preference number: 4 (lower is better) Translates to: TLASLSPTSISPLQSSSGLKALS*NFSGGR Trigger: NCGGCCCCCAGAGAAGTTTCAGGACAAAGCCTTCAA...ACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000159429.2 |
||
| CDS-3UTR GCA 90 bp | AGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAGGCACCTCAGGTTGGGTTaGTTTAGGTATTTGAGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: SISPLQSSSGGGWACDRRHLRLG*FRYLSH Trigger: ATGGCTCAAATACCTAAAGCAACCCAACCTGAGGTG...CCTCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR GCA 90 bp | CCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAACTGATCCTGAAGGGCTaGAATGGAGCAATGTGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: PCCLTLASLSPTSISPLQLILKG*NGAMWV Trigger: CACCCACATTGCTCCATTGCAGCCCTTCAGGATCAG...TTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
||
| CDS-3UTR CCA 90 bp | CCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGAGCCATAGAAGAACATaGTGGAGAAATGGGGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: PQQASVPCKVQVVVVGPVSHRRT*WRNGAH Trigger: ATGTGCCCCATTTCTCCACCATGTTCTTCTATGGCT...CACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR CCA 90 bp | CCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACATCTTCAGTGAGACATaGGCAGACGATGAAGAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: PTSISPLQSSSGGGWACDIFSET*ADDEED Trigger: GTCCTCTTCATCGTCTGCCCATGTCTCACTGAAGAT...GTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS-3UTR TCA 90 bp | CAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAGGGCCATATTCTCTGTATGGGAAACCGAACTCTaGGAACACCTGATCCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: QSSSGGGWACDRRAIFSVWETEL*EHLILK Trigger: CTTCAGGATCAGGTGTTCTCAGAGTTCGGTTTCCCA...TACAGAGAATATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS-3UTR CCA 90 bp | CCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGCCATAGAAGAACATaGTGGAGAAATGGGGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: PTSISPLQSSSGGGWACDSHRRT*WRNGAH Trigger: ATGTGCCCCATTTCTCCACCATGTTCTTCTATGGCT...GTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR TCA 90 bp | CCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAGGGCCATATTCGTTGCTTTAGGTATTTaGGCCATAGAAGAACATGGT | + |
|
Preference number: 4 (lower is better) Translates to: PLQSSSGGGWACDRRAIFVALGI*AIEEHG Trigger: ACCATGTTCTTCTATGGCTCAAATACCTAAAGCAAC...GAATATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR TCA 90 bp | AGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAGGGCCATATTCTCTGTAACCAAGTTTCCAGAACTTTaGGGAAGATCCACCTCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: SSSGGGWACDRRAIFSVTKFPEL*GRSTSG Trigger: ACCTGAGGTGGATCTTCCTCAAAGTTCTGGAAACTT...GGTTACAGAGAATATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
||
| CDS-3UTR TCA 90 bp | TGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCATTGAAGGCTTTGTCCTaGAACTTCTCTGGGGGCCGA | + |
|
Preference number: 4 (lower is better) Translates to: CLTLASLSPTSISPLQSSLKALS*NFSGGR Trigger: TCGGCCCCCAGAGAAGTTTCAGGACAAAGCCTTCAA...TGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
||
| CDS-3UTR CCA 90 bp | TTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAACATGGTGGAGAAATaGGGCACATTGCTGGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LFNTGISVPNKHQSPAKFNMVEK*GTLLGL Trigger: CAGCCCCAGCAATGTGCCCCATTTCTCCACCATGTT...GAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR CCA 90 bp | TTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCCCTGAAGGGCTGCAATaGAGCAATGTGGGTGGATCT | + |
|
Preference number: 4 (lower is better) Translates to: LFNTGISVPNKHQSPAKFPEGLQ*SNVGGS Trigger: AGATCCACCCACATTGCTCCATTGCAGCCCTTCAGG...GAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
||
| CDS-3UTR TCA 90 bp | AACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGAAGTTTCCAGAACTTTaGGGAAGATCCACCTCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: NTGISVPNKHQSPAKFKWKFPEL*GRSTSG Trigger: ACCTGAGGTGGATCTTCCTCAAAGTTCTGGAAACTT...CCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
||
| CDS-3UTR CCA 90 bp | AAGAAAAGCAGGGTCTCCATCTTGAGAGACCCCATAGGAAGCAAGGCTTCGTTCCATAGAAGAACATGGTaGAGAAATGGGGCACATTGC | + |
|
Preference number: 4 (lower is better) Translates to: KKSRVSILRDPIGSKASFHRRTW*RNGAHC Trigger: GCAATGTGCCCCATTTCTCCACCATGTTCTTCTATG...GAACGAAGCCTTGCTTCCTATGGGGTCTCTCAAGATGGAGACCCTGCTTTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS-3UTR GCA 90 bp | GTATGTAGCCCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCACCTCAGGTTGGGTTaGTTTAGGTATTTGAGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: VCSPCCLTLASLSPTSISHLRLG*FRYLSH Trigger: ATGGCTCAAATACCTAAAGCAACCCAACCTGAGGTG...ACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGGGCTACATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
||
| CDS-3UTR CCA 90 bp | GTATGTAGCCCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCATAGAAGAACATGGTaGAGAAATGGGGCACATTGC | + |
|
Preference number: 4 (lower is better) Translates to: VCSPCCLTLASLSPTSISHRRTW*RNGAHC Trigger: GCAATGTGCCCCATTTCTCCACCATGTTCTTCTATG...ACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGGGCTACATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
||
| CDS TCA 90 bp | GCTTCCGCGGCTGCGCTTCGGCATCCTGTCCAGCGCCCAGGGGCCTaGCCGCCGCGTGCACTGCCAGGAGCACCACAGGTGAGGCAGGGT | + |
|
Preference number: 5 (lower is better) Translates to: ASAAALRHPVQRPGA*PPRALPGAPQVRQG Trigger: ACCCTGCCTCACCTGTGGTGCTCCTGGCAGTGCACGCGGCGGTCAGGCCCCTGGGCGCTGGACAGGATGCCGAAGCGCAGCCGCGGAAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS GCA 90 bp | CGTCCAGGCCGCTCAGGGTCCGCTATCAATTGCAGCTTCCGCGGCTaGGCTTCGGCATCCTGTCCAGCGCCCAGGGGCCTGACCGCCGCG | + |
|
Preference number: 5 (lower is better) Translates to: RPGRSGSAINCSFRG*ASASCPAPRGLTAA Trigger: CGCGGCGGTCAGGCCCCTGGGCGCTGGACAGGATGCCGAAGCGCAGCCGCGGAAGCTGCAATTGATAGCGGACCCTGAGCGGCCTGGACG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS GCA 90 bp | TGCGCTTCGGCATCCTGTCCAGCGCCCAGGGGCCTGACCGCCGCGTaGACTGCCAGGAGCACCACAGGTGAGGCAGGGTCTGCAGCCACT | + |
|
Preference number: 5 (lower is better) Translates to: CASASCPAPRGLTAA*TARSTTGEAGSAAT Trigger: AGTGGCTGCAGACCCTGCCTCACCTGTGGTGCTCCTGGCAGTGCACGCGGCGGTCAGGCCCCTGGGCGCTGGACAGGATGCCGAAGCGCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS GCA 90 bp | AGTCCTAGCCGGAAGCGTCCAGGCCGCTCAGGGTCCGCTATCAATTaGAGCTTCCGCGGCTGCGCTTCGGCATCCTGTCCAGCGCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: SPSRKRPGRSGSAIN*SFRGCASASCPAPR Trigger: CCTGGGCGCTGGACAGGATGCCGAAGCGCAGCCGCGGAAGCTGCAATTGATAGCGGACCCTGAGCGGCCTGGACGCTTCCGGCTAGGACT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS GCA 90 bp | CGCACCAGTGCTGCCCACTGCTGTGCTTCCTCGGGGTCGAGGAAGTaGACGCTGAAGGTTCCAGGACCTCCAGGGGGAGGCTGCAGCTCG | + |
|
Preference number: 5 (lower is better) Translates to: RTSAAHCCASSGSRK*TLKVPGPPGGGCSS Trigger: CGAGCTGCAGCCTCCCCCTGGAGGTCCTGGAACCTTCAGCGTGCACTTCCTCGACCCCGAGGAAGCACAGCAGTGGGCAGCACTGGTGCG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
||
| CDS GCA 90 bp | GAGAGCCACATGATGCTGCGCCAGGACTGCTGCCACTTGGGCCGCTaGTTTCTCATCCCCACCTGCAATGGCCTGGGACAGGCGTGTAGC | + |
|
Preference number: 5 (lower is better) Translates to: ESHMMLRQDCCHLGR*FLIPTCNGLGQACS Trigger: GCTACACGCCTGTCCCAGGCCATTGCAGGTGGGGATGAGAAAGCAGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCATCATGTGGCTCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
||
| CDS GCA 90 bp | TTGTCCTTCTGCGGTGGCATCTCGCACCAGTGCTGCCCACTGCTGTaGTTCCTCGGGGTCGAGGAAGTGCACGCTGAAGGTTCCAGGACC | + |
|
Preference number: 5 (lower is better) Translates to: LSFCGGISHQCCPLL*FLGVEEVHAEGSRT Trigger: GGTCCTGGAACCTTCAGCGTGCACTTCCTCGACCCCGAGGAAGCACAGCAGTGGGCAGCACTGGTGCGAGATGCCACCGCAGAAGGACAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
||
| CDS GCA 90 bp | GCTGCCACTGCCATTTTGTCCTTCTGCGGTGGCATCTCGCACCAGTaGTGCCCACTGCTGTGCTTCCTCGGGGTCGAGGAAGTGCACGCT | + |
|
Preference number: 5 (lower is better) Translates to: AATAILSFCGGISHQ*CPLLCFLGVEEVHA Trigger: AGCGTGCACTTCCTCGACCCCGAGGAAGCACAGCAGTGGGCAGCACTGGTGCGAGATGCCACCGCAGAAGGACAAAATGGCAGTGGCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
||
| CDS-3UTR CAA 90 bp | AGGCACCGCCCAATGACCCAGCGCTGCACAGCTGGTGGGAAACCGAACTCTGATAGGGTCCGCTATCAATaGCAGCTTCCGCGGCTGCGC | + |
|
Preference number: 5 (lower is better) Translates to: RHRPMTQRCTAGGKPNSDRVRYQ*QLPRLR Trigger: GCGCAGCCGCGGAAGCTGCAATTGATAGCGGACCCT...ATCAGAGTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160560.2 |
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| CDS GCA 90 bp | GCCACTGCCATTTTGTCCTTCTGCGGTGGCATCTCGCACCAGTGCTaGCCACTGCTGTGCTTCCTCGGGGTCGAGGAAGTGCACGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: ATAILSFCGGISHQC*PLLCFLGVEEVHAE Trigger: TTCAGCGTGCACTTCCTCGACCCCGAGGAAGCACAGCAGTGGGCAGCACTGGTGCGAGATGCCACCGCAGAAGGACAAAATGGCAGTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS-3UTR CAA 90 bp | AGGAAGGGCAAGACCAGCCAGGCTGAGAGGGACTTGGGAGACTGGAACTGGACGCAGGACTGCTGCCACTaGGGCCGCTGCTTTCTCATC | + |
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Preference number: 5 (lower is better) Translates to: RKGKTSQAERDLGDWNWTQDCCH*GRCFLI Trigger: GATGAGAAAGCAGCGGCCCAAGTGGCAGCAGTCCTG...CGTCCAGTTCCAGTCTCCCAAGTCCCTCTCAGCCTGGCTGGTCTTGCCCTTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230314.2 |
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| CDS GCA 90 bp | CCATTTTGTCCTTCTGCGGTGGCATCTCGCACCAGTGCTGCCCACTaGTGTGCTTCCTCGGGGTCGAGGAAGTGCACGCTGAAGGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: PFCPSAVASRTSAAH*CASSGSRKCTLKVP Trigger: TGGAACCTTCAGCGTGCACTTCCTCGACCCCGAGGAAGCACAGCAGTGGGCAGCACTGGTGCGAGATGCCACCGCAGAAGGACAAAATGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS GCA 90 bp | CATGAGCTGGACATTGAGAGCCACATGATGCTGCGCCAGGACTGCTaGCACTTGGGCCGCTGCTTTCTCATCCCCACCTGCAATGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: HELDIESHMMLRQDC*HLGRCFLIPTCNGL Trigger: CAGGCCATTGCAGGTGGGGATGAGAAAGCAGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCATCATGTGGCTCTCAATGTCCAGCTCATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS GCA 90 bp | CTCCATGAGCTGGACATTGAGAGCCACATGATGCTGCGCCAGGACTaGTGCCACTTGGGCCGCTGCTTTCTCATCCCCACCTGCAATGGC | + |
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Preference number: 5 (lower is better) Translates to: LHELDIESHMMLRQD*CHLGRCFLIPTCNG Trigger: GCCATTGCAGGTGGGGATGAGAAAGCAGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCATCATGTGGCTCTCAATGTCCAGCTCATGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS-3UTR CAA 90 bp | TGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTAGGGTCCGCTATCAATaGCAGCTTCCGCGGCTGCGC | + |
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Preference number: 5 (lower is better) Translates to: CPQQASVPCKVQVVVVGPRVRYQ*QLPRLR Trigger: GCGCAGCCGCGGAAGCTGCAATTGATAGCGGACCCT...AGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR CAA 90 bp | CAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAAGGGTCCGCTATCAATaGCAGCTTCCGCGGCTGCGC | + |
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Preference number: 5 (lower is better) Translates to: QASVPCKVQVVVVGPVTGRVRYQ*QLPRLR Trigger: GCGCAGCCGCGGAAGCTGCAATTGATAGCGGACCCT...TCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR CAA 90 bp | AGTCCCCTGCAAAGTTCAAGTGGTGGTGGTTGGGCCTGTGACAGGAGGGCCATACAGGACTGCTGCCACTaGGGCCGCTGCTTTCTCATC | + |
|
Preference number: 5 (lower is better) Translates to: SPLQSSSGGGWACDRRAIQDCCH*GRCFLI Trigger: GATGAGAAAGCAGCGGCCCAAGTGGCAGCAGTCCTG...TATGGCCCTCCTGTCACAGGCCCAACCACCACCACTTGAACTTTGCAGGGGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR CAA 90 bp | CTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTCAGGCTGAGAGGGACTaGGGAGACTGGAACTGGACG | + |
|
Preference number: 5 (lower is better) Translates to: LASLSPTSISPLQSSSGGQAERD*GDWNWT Trigger: CGTCCAGTTCCAGTCTCCCAAGTCCCTCTCAGCCTG...ACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
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| CDS-3UTR CAA 90 bp | GGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGCCAAGCACAGGGCCTTaGGGTGCTACACATCTCACA | + |
|
Preference number: 5 (lower is better) Translates to: GISVPNKHQSPAKFKWWWPSTGP*GATHLT Trigger: TGTGAGATGTGTAGCACCCAAAGGCCCTGTGCTTGG...CCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
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| CDS-3UTR CAA 90 bp | CCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAGCTGCCACTGCCATTTaGTCCTTCTGCGGTGGCATC | + |
|
Preference number: 5 (lower is better) Translates to: PCCLTLASLSPTSISPLQAATAI*SFCGGI Trigger: GATGCCACCGCAGAAGGACAAAATGGCAGTGGCAGC...TTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS-3UTR CAA 90 bp | GAGCAATGTGGGTGGATCTTCAGTGAGACATGGGCAGACGATGAAGAGGACAAACAGGACTGCTGCCACTaGGGCCGCTGCTTTCTCATC | + |
|
Preference number: 5 (lower is better) Translates to: EQCGWIFSETWADDEEDKQDCCH*GRCFLI Trigger: GATGAGAAAGCAGCGGCCCAAGTGGCAGCAGTCCTG...TTTGTCCTCTTCATCGTCTGCCCATGTCTCACTGAAGATCCACCCACATTGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS-3UTR CAA 90 bp | GCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGTGGGCGGTTTGAGGCATaGATGAAAGTGCAGGAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: ASLSPTSISPLQSSSGGGGRFEA*MKVQEG Trigger: CCCTTCCTGCACTTTCATCAATGCCTCAAACCGCCC...ACCACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
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| CDS-3UTR CAA 90 bp | CTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTCCAAGCACAGGGCCTTaGGGTGCTACACATCTCACA | + |
|
Preference number: 5 (lower is better) Translates to: LASLSPTSISPLQSSSGGPSTGP*GATHLT Trigger: TGTGAGATGTGTAGCACCCAAAGGCCCTGTGCTTGG...ACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
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| CDS-3UTR CAA 90 bp | GTATGTAGCCCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCAGGCTGAGAGGGACTaGGGAGACTGGAACTGGACG | + |
|
Preference number: 5 (lower is better) Translates to: VCSPCCLTLASLSPTSISQAERD*GDWNWT Trigger: CGTCCAGTTCCAGTCTCCCAAGTCCCTCTCAGCCTG...ACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGGGCTACATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
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| CDS-3UTR CAA 90 bp | TGTAGCCCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCGGGCGGTTTGAGGCATaGATGAAAGTGCAGGAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: CSPCCLTLASLSPTSISPGRFEA*MKVQEG Trigger: CCCTTCCTGCACTTTCATCAATGCCTCAAACCGCCC...GGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGGGCTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000159429.2 |
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| CDS-3UTR CAA 90 bp | GTGGGAAACCGAACTCTGATCCTGAAGGGCTGCAATGGAGCAATGTGGGTGGATGAAGTTTCCAGAACTTaGAGGAAGATCCACCTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: VGNRTLILKGCNGAMWVDEVSRT*RKIHLR Trigger: CCTGAGGTGGATCTTCCTCAAAGTTCTGGAAACTTC...ATCCACCCACATTGCTCCATTGCAGCCCTTCAGGATCAGAGTTCGGTTTCCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160560.2 |
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| CDS-3UTR CAA 90 bp | TGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGTTCAAGTGGTGGTGGAAGTTTCCAGAACTTaGAGGAAGATCCACCTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: WHLCPQQASVPCKVQVVVEVSRT*RKIHLR Trigger: CCTGAGGTGGATCTTCCTCAAAGTTCTGGAAACTTC...CACCACCACTTGAACTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR CAA 90 bp | GTATGTAGCCCCTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTGAAGTTTCCAGAACTTaGAGGAAGATCCACCTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: VCSPCCLTLASLSPTSISEVSRT*RKIHLR Trigger: CCTGAGGTGGATCTTCCTCAAAGTTCTGGAAACTTC...ACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAGGGGCTACATAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS-3UTR CAA 90 bp | CTGTTGTTTAACACTGGCATCTCTGTCCCCAACAAGCATCAGTCCCCTGCAAAGGGTTGCTTTAGGTATTaGAGCCATAGAAGAACATGG | + |
|
Preference number: 5 (lower is better) Translates to: LLFNTGISVPNKHQSPAKGCFRY*SHRRTW Trigger: CCATGTTCTTCTATGGCTCAAATACCTAAAGCAACC...CTTTGCAGGGGACTGATGCTTGTTGGGGACAGAGATGCCAGTGTTAAACAACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023211.16 ENSMUST00000230314.2 |
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| CDS TCA 72 bp | GCTGCGCTTCGGCATCCTGTCCAGCGCCCAGGGGCCTaGCCGCCGCGTGCACTGCCAGGAGCACCACAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: AALRHPVQRPGA*PPRALPGAPQV Trigger: CACCTGTGGTGCTCCTGGCAGTGCACGCGGCGGTCAGGCCCCTGGGCGCTGGACAGGATGCCGAAGCGCAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS GCA 72 bp | GCTGGGGCTGGGCTGCCACTGCCGCCCCAGGCTCGGTaGCTAACAGTCCTAGCCGGAAGCGTCCAGGCCGCT | + |
|
Preference number: 6 (lower is better) Translates to: AGAGLPLPPQAR*LTVLAGSVQAA Trigger: AGCGGCCTGGACGCTTCCGGCTAGGACTGTTAGGCACCGAGCCTGGGGCGGCAGTGGCAGCCCAGCCCCAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS GCA 72 bp | GCATCCTGTCCAGCGCCCAGGGGCCTGACCGCCGCGTaGACTGCCAGGAGCACCACAGGTGAGGCAGGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: ASCPAPRGLTAA*TARSTTGEAGS Trigger: AGACCCTGCCTCACCTGTGGTGCTCCTGGCAGTGCACGCGGCGGTCAGGCCCCTGGGCGCTGGACAGGATGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS GCA 72 bp | CGCTCAGGGTCCGCTATCAATTGCAGCTTCCGCGGCTaGGCTTCGGCATCCTGTCCAGCGCCCAGGGGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: RSGSAINCSFRG*ASASCPAPRGL Trigger: CAGGCCCCTGGGCGCTGGACAGGATGCCGAAGCGCAGCCGCGGAAGCTGCAATTGATAGCGGACCCTGAGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS CAA 72 bp | CCGGAAGCGTCCAGGCCGCTCAGGGTCCGCTATCAATaGCAGCTTCCGCGGCTGCGCTTCGGCATCCTGTCC | + |
|
Preference number: 6 (lower is better) Translates to: PEASRPLRVRYQ*QLPRLRFGILS Trigger: GGACAGGATGCCGAAGCGCAGCCGCGGAAGCTGCAATTGATAGCGGACCCTGAGCGGCCTGGACGCTTCCGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS GCA 72 bp | CGGAAGCGTCCAGGCCGCTCAGGGTCCGCTATCAATTaGAGCTTCCGCGGCTGCGCTTCGGCATCCTGTCCA | + |
|
Preference number: 6 (lower is better) Translates to: RKRPGRSGSAIN*SFRGCASASCP Trigger: TGGACAGGATGCCGAAGCGCAGCCGCGGAAGCTGCAATTGATAGCGGACCCTGAGCGGCCTGGACGCTTCCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS GCA 72 bp | CCTTCTGCGGTGGCATCTCGCACCAGTGCTGCCCACTaGTGTGCTTCCTCGGGGTCGAGGAAGTGCACGCTG | + |
|
Preference number: 6 (lower is better) Translates to: PSAVASRTSAAH*CASSGSRKCTL Trigger: CAGCGTGCACTTCCTCGACCCCGAGGAAGCACAGCAGTGGGCAGCACTGGTGCGAGATGCCACCGCAGAAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS GCA 72 bp | TGCGGTGGCATCTCGCACCAGTGCTGCCCACTGCTGTaGTTCCTCGGGGTCGAGGAAGTGCACGCTGAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: CGGISHQCCPLL*FLGVEEVHAEG Trigger: ACCTTCAGCGTGCACTTCCTCGACCCCGAGGAAGCACAGCAGTGGGCAGCACTGGTGCGAGATGCCACCGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS GCA 72 bp | TGCTGCCACTTGGGCCGCTGCTTTCTCATCCCCACCTaGAATGGCCTGGGACAGGCGTGTAGCCAGCTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: CCHLGRCFLIPT*NGLGQACSQLF Trigger: GAAGAGCTGGCTACACGCCTGTCCCAGGCCATTGCAGGTGGGGATGAGAAAGCAGCGGCCCAAGTGGCAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS GCA 72 bp | ATGATGCTGCGCCAGGACTGCTGCCACTTGGGCCGCTaGTTTCTCATCCCCACCTGCAATGGCCTGGGACAG | + |
|
Preference number: 6 (lower is better) Translates to: MMLRQDCCHLGR*FLIPTCNGLGQ Trigger: CTGTCCCAGGCCATTGCAGGTGGGGATGAGAAAGCAGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCATCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS CCA 72 bp | GGGCTGGGCTGCCACTGCCATTTTGTCCTTCTGCGGTaGCATCTCGCACCAGTGCTGCCCACTGCTGTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: GLGCHCHFVLLR*HLAPVLPTAVL Trigger: AAGCACAGCAGTGGGCAGCACTGGTGCGAGATGCCACCGCAGAAGGACAAAATGGCAGTGGCAGCCCAGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS CAA 90 bp | CACGCTGAAGGTTCCAGGACCTCCAGGGGGAGGCTGCAGCTCGTGTaGGTTAGGCCCACGGACGGTGTAACAAATAGCCTCCAAGGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: HAEGSRTSRGRLQLV*VRPTDGVTNSLQGP Trigger: TGGCCCTTGGAGGCTATTTGTTACACCGTCCGTGGGCCTAACCAACACGAGCTGCAGCCTCCCCCTGGAGGTCCTGGAACCTTCAGCGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS TCA 72 bp | AACCAGGCCTCCATGAGCTGGACATTGAGAGCCACATaGTGCTGCGCCAGGACTGCTGCCACTTGGGCCGCT | + |
|
Preference number: 6 (lower is better) Translates to: NQASMSWTLRAT*CCARTAATWAA Trigger: AGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCATCATGTGGCTCTCAATGTCCAGCTCATGGAGGCCTGGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS GCA 72 bp | GACATTGAGAGCCACATGATGCTGCGCCAGGACTGCTaGCACTTGGGCCGCTGCTTTCTCATCCCCACCTGC | + |
|
Preference number: 6 (lower is better) Translates to: DIESHMMLRQDC*HLGRCFLIPTC Trigger: GCAGGTGGGGATGAGAAAGCAGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCATCATGTGGCTCTCAATGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS GCA 72 bp | CTGGACATTGAGAGCCACATGATGCTGCGCCAGGACTaGTGCCACTTGGGCCGCTGCTTTCTCATCCCCACC | + |
|
Preference number: 6 (lower is better) Translates to: LDIESHMMLRQD*CHLGRCFLIPT Trigger: GGTGGGGATGAGAAAGCAGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCATCATGTGGCTCTCAATGTCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS GCA 72 bp | ATTTTGTCCTTCTGCGGTGGCATCTCGCACCAGTGCTaGCCACTGCTGTGCTTCCTCGGGGTCGAGGAAGTG | + |
|
Preference number: 6 (lower is better) Translates to: ILSFCGGISHQC*PLLCFLGVEEV Trigger: CACTTCCTCGACCCCGAGGAAGCACAGCAGTGGGCAGCACTGGTGCGAGATGCCACCGCAGAAGGACAAAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS TCA 72 bp | ATGAAGAGGACAAAACCGATGTGGCGTCTTCAACTGTaGCTTGTAGCCTTATGGGACCTGGTGGGAACCAGG | + |
|
Preference number: 6 (lower is better) Translates to: MKRTKPMWRLQL*LVALWDLVGTR Trigger: CCTGGTTCCCACCAGGTCCCATAAGGCTACAAGTCACAGTTGAAGACGCCACATCGGTTTTGTCCTCTTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023211.16 |
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| CDS TCA 72 bp | GGAAGATCCACCTCAGGTTGGGTTGCTTTAGGTATTTaGGCCATAGAAGAACATGGTGGAGAAATGGGGCAC | + |
|
Preference number: 6 (lower is better) Translates to: GRSTSGWVALGI*AIEEHGGEMGH Trigger: GTGCCCCATTTCTCCACCATGTTCTTCTATGGCTCAAATACCTAAAGCAACCCAACCTGAGGTGGATCTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS CAA 90 bp | AGAACTTTGAGGAAGATCCACCTCAGGTTGGGTTGCTTTAGGTATTaGAGCCATAGAAGAACATGGTGGAGAAATGGGGCACATTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: RTLRKIHLRLGCFRY*SHRRTWWRNGAHCW Trigger: CCAGCAATGTGCCCCATTTCTCCACCATGTTCTTCTATGGCTCAAATACCTAAAGCAACCCAACCTGAGGTGGATCTTCCTCAAAGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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| CDS CAA 72 bp | GAAGTTTCCAGAACTTTGAGGAAGATCCACCTCAGGTaGGGTTGCTTTAGGTATTTGAGCCATAGAAGAACA | + |
|
Preference number: 6 (lower is better) Translates to: EVSRTLRKIHLR*GCFRYLSHRRT Trigger: TGTTCTTCTATGGCTCAAATACCTAAAGCAACCCAACCTGAGGTGGATCTTCCTCAAAGTTCTGGAAACTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023211.16 ENSMUST00000160560.2 ENSMUST00000230314.2 |
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