RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SHANK3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022623

Ensembl transcript IDs: ENSMUST00000039074.14, ENSMUST00000109309.9, ENSMUST00000135214.2, ENSMUST00000167173.2, ENSMUST00000229559.2, ENSMUST00000230807.2, ENSMUST00000238458.2

Found 583 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGTTGGCATAGGGACTATCAGGGCCTGACGGCCGAGGCCGGCGCTTaGGGCGCTCAGGCGGTGTGGCGGCAGGCGCAGGCCGGGGGACAT +
Preference number: 1 (lower is better)
Translates to: GWHRDYQGLTAEAGA*GAQAVWRQAQAGGH
Trigger: ATGTCCCCCGGCCTGCGCCTGCCGCCACACCGCCTGAGCGCCCCAAGCGCCGGCCTCGGCCGTCAGGCCCTGATAGTCCCTATGCCAACC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp CCCGCGGTGCGTCGGAGAGGGTTCTCGTGCAAAGCTTCCGCCCACTaGTCCCGGGCTACCCACGGCCAGGGCCGCGCGCTCCTGAGCGTC +
Preference number: 1 (lower is better)
Translates to: PAVRRRGFSCKASAH*SRATHGQGRALLSV
Trigger: GACGCTCAGGAGCGCGCGGCCCTGGCCGTGGGTAGCCCGGGACCAGTGGGCGGAAGCTTTGCACGAGAACCCTCTCCGACGCACCGCGGG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 90 bp ACAGGCCGGCGGCCCCCGCACCCAGACGAGCCTCCAGGCCTGGTTTaGAGCTGGAGCGCACAGTGTCATAGGCCCGGCCCGGTGGTGGCG +
Preference number: 1 (lower is better)
Translates to: TGRRPPHPDEPPGLV*SWSAQCHRPGPVVA
Trigger: CGCCACCACCGGGCCGGGCCTATGACACTGTGCGCTCCAGCTTCAAACCAGGCCTGGAGGCTCGTCTGGGTGCGGGGGCCGCCGGCCTGT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 90 bp GCTGGCACTGAAGGCGCCCAGGTTGGCATAGGGACTATCAGGGCCTaGCGGCCGAGGCCGGCGCTTGGGGCGCTCAGGCGGTGTGGCGGC +
Preference number: 1 (lower is better)
Translates to: AGTEGAQVGIGTIRA*RPRPALGALRRCGG
Trigger: GCCGCCACACCGCCTGAGCGCCCCAAGCGCCGGCCTCGGCCGTCAGGCCCTGATAGTCCCTATGCCAACCTGGGCGCCTTCAGTGCCAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp GCGCACGCTTCTGACGCTCAGGGTAGGGCAGCGGGCCCAGAGGCGTaGTCGGATCATACAGGCCGGCGGCCCCCGCACCCAGACGAGCCT +
Preference number: 1 (lower is better)
Translates to: AHASDAQGRAAGPEA*SDHTGRRPPHPDEP
Trigger: AGGCTCGTCTGGGTGCGGGGGCCGCCGGCCTGTATGATCCGAGCACGCCTCTGGGCCCGCTGCCCTACCCTGAGCGTCAGAAGCGTGCGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp GCACAGTGTCATAGGCCCGGCCCGGTGGTGGCGGCGGTGAGAAGGTaGGGGGTGGCCCGGAGTCGAAGTAGTAGGGCGCGGGTGGGGGTG +
Preference number: 1 (lower is better)
Translates to: AQCHRPGPVVAAVRR*GVARSRSSRARVGV
Trigger: CACCCCCACCCGCGCCCTACTACTTCGACTCCGGGCCACCCCCCACCTTCTCACCGCCGCCACCACCGGGCCGGGCCTATGACACTGTGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp ATCATACAGGCCGGCGGCCCCCGCACCCAGACGAGCCTCCAGGCCTaGTTTGAAGCTGGAGCGCACAGTGTCATAGGCCCGGCCCGGTGG +
Preference number: 1 (lower is better)
Translates to: IIQAGGPRTQTSLQA*FEAGAHSVIGPARW
Trigger: CCACCGGGCCGGGCCTATGACACTGTGCGCTCCAGCTTCAAACCAGGCCTGGAGGCTCGTCTGGGTGCGGGGGCCGCCGGCCTGTATGAT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp AGCCGGGAGAAGGCGAGGGCAGCGGAGATGGTGAGGGGGAGCGGCTaGGCGCACTCACACTTCGCACCACGAAGCGCACTTCCTTGGGTT +
Preference number: 1 (lower is better)
Translates to: SREKARAAEMVRGSG*AHSHFAPRSALPWV
Trigger: AACCCAAGGAAGTGCGCTTCGTGGTGCGAAGTGTGAGTGCGCGCAGCCGCTCCCCCTCACCATCTCCGCTGCCCTCGCCTTCTCCCGGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR GCA 90 bp GCTGGTGGGCCGCTGCTTGACAGTGGCCGCCCTCGAGTCAGCATCTaGAATGTCCGGCCTCAGTGTCGGCTCCGCGGCAACTGCCAGGAT +
Preference number: 1 (lower is better)
Translates to: AGGPLLDSGRPRVSI*NVRPQCRLRGNCQD
Trigger: ATCCTGGCAGTTGCCGCGGAGCCGACACTGAGGCCGGACATTGCAGATGCTGACTCGAGGGCGGCCACTGTCAAGCAGCGGCCCACCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp GCCCACATCGAACTTGCTCCAGAGCTGCAGGGGCTTCTGTTGAAATaGCCGACGCGGGCCGGCACTGGGGCCAGAGCCGGGAGAAGGCGA +
Preference number: 1 (lower is better)
Translates to: AHIELAPELQGLLLK*PTRAGTGARAGRRR
Trigger: TCGCCTTCTCCCGGCTCTGGCCCCAGTGCCGGCCCGCGTCGGCCATTTCAACAGAAGCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR CCA 90 bp AGGCGGTGTGGCGGCAGGCGCAGGCCGGGGGACATCACCCACTTCTaGCGCAGAGTCCTGCAGTATGATCATGGAGCGCGCACGCTTCTG +
Preference number: 1 (lower is better)
Translates to: RRCGGRRRPGDITHF*RRVLQYDHGARTLL
Trigger: CAGAAGCGTGCGCGCTCCATGATCATACTGCAGGACTCTGCGCCAGAAGTGGGTGATGTCCCCCGGCCTGCGCCTGCCGCCACACCGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 90 bp CAGTCGCCCACATCGAACTTGCTCCAGAGCTGCAGGGGCTTCTGTTaGAATGGCCGACGCGGGCCGGCACTGGGGCCAGAGCCGGGAGAA +
Preference number: 1 (lower is better)
Translates to: QSPTSNLLQSCRGFC*NGRRGPALGPEPGE
Trigger: TTCTCCCGGCTCTGGCCCCAGTGCCGGCCCGCGTCGGCCATTTCAACAGAAGCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGCGACTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR TCA 90 bp GGCTCTTGCGGCGCTGTGGTTTCGACGGAGCGAAGAGGCTGGCACTaGAGGCGCCCAGGTTGGCATAGGGACTATCAGGGCCTGACGGCC +
Preference number: 1 (lower is better)
Translates to: GSCGAVVSTERRGWH*RRPGWHRDYQGLTA
Trigger: GGCCGTCAGGCCCTGATAGTCCCTATGCCAACCTGGGCGCCTTCAGTGCCAGCCTCTTCGCTCCGTCGAAACCACAGCGCCGCAAGAGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp ACCCACCAGCAGGACAGGGCCCCTTCCCGGGCACACACCCATGCATaGACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAA +
Preference number: 1 (lower is better)
Translates to: THQQDRAPSRAHTHA*TLCKLLPPPPTHPE
Trigger: TTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCCCGGGAAGGGGCCCTGTCCTGCTGGTGGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR GCA 90 bp TGGAGCGGGAGGGTTGTAGGGATGGCAGATCCGCGCTGGGAGGGCTaGCCTCGATGGCACCCACAGAGAGGAACACAGTGGAACGGCGTC +
Preference number: 1 (lower is better)
Translates to: WSGRVVGMADPRWEG*PRWHPQRGTQWNGV
Trigger: GACGCCGTTCCACTGTGTTCCTCTCTGTGGGTGCCATCGAGGGCAGCCCTCCCAGCGCGGATCTGCCATCCCTACAACCCTCCCGCTCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp GAGGCAGCATGGTGCTGCTGGGCCATGAGCTCACTGTCCGAGGATTaGTTCAGCAGCGGGTCCCTGAAGGTCACCGGCCCCTTCCCCAGC +
Preference number: 1 (lower is better)
Translates to: EAAWCCWAMSSLSED*FSSGSLKVTGPFPS
Trigger: GCTGGGGAAGGGGCCGGTGACCTTCAGGGACCCGCTGCTGAAGCAATCCTCGGACAGTGAGCTCATGGCCCAGCAGCACCATGCTGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp CCCTTCCGCAGAGAGCCCGGCAGCTTCTCTGGGCCTGGGAGGCCCTaGCGCTCAAACAATGAGCTGATCTCAGCAGGGGTGATCCTCCGG +
Preference number: 1 (lower is better)
Translates to: PFRREPGSFSGPGRP*RSNNELISAGVILR
Trigger: CCGGAGGATCACCCCTGCTGAGATCAGCTCATTGTTTGAGCGCCAGGGCCTCCCAGGCCCAGAGAAGCTGCCGGGCTCTCTGCGGAAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 90 bp CAGGCCGGGGGACATCACCCACTTCTGGCGCAGAGTCCTGCAGTATaGTCATGGAGCGCGCACGCTTCTGACGCTCAGGGTAGGGCAGCG +
Preference number: 1 (lower is better)
Translates to: QAGGHHPLLAQSPAV*SWSAHASDAQGRAA
Trigger: CGCTGCCCTACCCTGAGCGTCAGAAGCGTGCGCGCTCCATGATCATACTGCAGGACTCTGCGCCAGAAGTGGGTGATGTCCCCCGGCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp GACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTaGGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCC +
Preference number: 1 (lower is better)
Translates to: DAQLHEVFLGERRQV*AFDLMVLEAVSVLA
Trigger: GGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR GCA 90 bp GTCTGCGGCGGGGGTGGAATGCCTCGACCTTCACGCACTGTGTCCTaGATTGACGTGCTGCGTGGGAAGCGCCCTTCCAGTAGGGATGCC +
Preference number: 1 (lower is better)
Translates to: VCGGGGMPRPSRTVS*IDVLRGKRPSSRDA
Trigger: GGCATCCCTACTGGAAGGGCGCTTCCCACGCAGCACGTCAATGCAGGACACAGTGCGTGAAGGTCGAGGCATTCCACCCCCGCCGCAGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 90 bp AGCAGGTGGCAGGTTCACAGCGAATACCAGCTCTGGCTCCTCCTCTaGGCTGCCTTGACCTGGCCCGGGATCTGCTGGGATGCTGCCAGG +
Preference number: 1 (lower is better)
Translates to: SRWQVHSEYQLWLLL*AALTWPGICWDAAR
Trigger: CCTGGCAGCATCCCAGCAGATCCCGGGCCAGGTCAAGGCAGCTCAGAGGAGGAGCCAGAGCTGGTATTCGCTGTGAACCTGCCACCTGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp CGCGCACTCACACTTCGCACCACGAAGCGCACTTCCTTGGGTTCGTaGGGGATGGAGAGGCTGGACGACTTGAGGATGGTGGGAGGCGTG +
Preference number: 1 (lower is better)
Translates to: RALTLRTTKRTSLGS*GMERLDDLRMVGGV
Trigger: CACGCCTCCCACCATCCTCAAGTCGTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCGTGGTGCGAAGTGTGAGTGCGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR GCA 90 bp AATGAGCTGATCTCAGCAGGGGTGATCCTCCGGCTGGTGGGCCGCTaGTTGACAGTGGCCGCCCTCGAGTCAGCATCTGCAATGTCCGGC +
Preference number: 1 (lower is better)
Translates to: NELISAGVILRLVGR*LTVAALESASAMSG
Trigger: GCCGGACATTGCAGATGCTGACTCGAGGGCGGCCACTGTCAAGCAGCGGCCCACCAGCCGGAGGATCACCCCTGCTGAGATCAGCTCATT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp TGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACAGCCCCTaGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCT +
Preference number: 1 (lower is better)
Translates to: CASFCRHLPPIQNSP*GPLHSQAHTGHPCA
Trigger: AGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR GCA 90 bp GCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTaGTCCAGAGCTGCAGGGGCTTCTGTTGAAATGGCCGACGCGGGC +
Preference number: 1 (lower is better)
Translates to: ARLSGCSPASRPHRT*SRAAGASVEMADAG
Trigger: GCCCGCGTCGGCCATTTCAACAGAAGCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR CCA 90 bp ACTCTTCAGGGGGTGGCACTAGCCCTATGCGGGCCAGCTCCTCTCTaGTCTCCTCATCGCTGGAGGACAGCTGAGCAGGTGGCAGGTTCA +
Preference number: 1 (lower is better)
Translates to: TLQGVALALCGPAPL*SPHRWRTAEQVAGS
Trigger: TGAACCTGCCACCTGCTCAGCTGTCCTCCAGCGATGAGGAGACCAGAGAGGAGCTGGCCCGCATAGGGCTAGTGCCACCCCCTGAAGAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp GCAGGATCCCATTGGCAAACTCTTCAGGGGGTGGCACTAGCCCTATaGGGGCCAGCTCCTCTCTGGTCTCCTCATCGCTGGAGGACAGCT +
Preference number: 1 (lower is better)
Translates to: AGSHWQTLQGVALAL*GPAPLWSPHRWRTA
Trigger: AGCTGTCCTCCAGCGATGAGGAGACCAGAGAGGAGCTGGCCCGCATAGGGCTAGTGCCACCCCCTGAAGAGTTTGCCAATGGGATCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 90 bp AGGATCCAAGGGTTTGCCAGTGAGAGGGTGGATGAAGGTGGAGCCTaGGGGCCCAAGGCTGGGACCACCGACCAATGGCTTCAGAGCAGA +
Preference number: 1 (lower is better)
Translates to: RIQGFASERVDEGGA*GPKAGTTDQWLQSR
Trigger: TCTGCTCTGAAGCCATTGGTCGGTGGTCCCAGCCTTGGGCCCTCAGGCTCCACCTTCATCCACCCTCTCACTGGCAAACCCTTGGATCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 90 bp GGACGTGTCCAAGACGCTGAGGATCATGGACTTCTTGTCCTCTGGTaGCTTCCGCTCTTCCCGAGGGGGCTTCTCTGCCTCTCTCCGAGC +
Preference number: 1 (lower is better)
Translates to: GRVQDAEDHGLLVLW*LPLFPRGLLCLSPS
Trigger: GCTCGGAGAGAGGCAGAGAAGCCCCCTCGGGAAGAGCGGAAGTCACCAGAGGACAAGAAGTCCATGATCCTCAGCGTCTTGGACACGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp GGGGTGGAATGCCTCGACCTTCACGCACTGTGTCCTGCATTGACGTaGTGCGTGGGAAGCGCCCTTCCAGTAGGGATGCCAGCTTCTCAT +
Preference number: 1 (lower is better)
Translates to: GVECLDLHALCPALT*CVGSALPVGMPASH
Trigger: ATGAGAAGCTGGCATCCCTACTGGAAGGGCGCTTCCCACGCAGCACGTCAATGCAGGACACAGTGCGTGAAGGTCGAGGCATTCCACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp AAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGCCTTCGATCTCATaGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCC +
Preference number: 1 (lower is better)
Translates to: KSSLVSAGRCAPSIS*SSKRSRCSPKWMLS
Trigger: GGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCTCACCAAGGAAGACTT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR CCA 90 bp ACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTaGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAG +
Preference number: 1 (lower is better)
Translates to: TKACPDLACWTRFPL*KNGHQELWRKWSGQ
Trigger: CTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CCA 90 bp CCGAGCTCAGGGTGGACATGCTGGACACTGTGGAAATGGTGCTTGTaGTCTCCAGGTGGGGGTCACTGGAGCTTCGAGTGTCAGCCTCCT +
Preference number: 1 (lower is better)
Translates to: PSSGWTCWTLWKWCL*SPGGGHWSFECQPP
Trigger: AGGAGGCTGACACTCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCCTGAGCTCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp CCCCACTCTCCGAGCTCAGGGTGGACATGCTGGACACTGTGGAAATaGTGCTTGTGGTCTCCAGGTGGGGGTCACTGGAGCTTCGAGTGT +
Preference number: 1 (lower is better)
Translates to: PHSPSSGWTCWTLWK*CLWSPGGGHWSFEC
Trigger: ACACTCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCCTGAGCTCGGAGAGTGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp GTGGAATGCCTCGACCTTCACGCACTGTGTCCTGCATTGACGTGCTaGGTGGGAAGCGCCCTTCCAGTAGGGATGCCAGCTTCTCATCCT +
Preference number: 1 (lower is better)
Translates to: VECLDLHALCPALTC*VGSALPVGMPASHP
Trigger: AGGATGAGAAGCTGGCATCCCTACTGGAAGGGCGCTTCCCACGCAGCACGTCAATGCAGGACACAGTGCGTGAAGGTCGAGGCATTCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp CACTCTCCGAGCTCAGGGTGGACATGCTGGACACTGTGGAAATGGTaGTTGTGGTCTCCAGGTGGGGGTCACTGGAGCTTCGAGTGTCAG +
Preference number: 1 (lower is better)
Translates to: HSPSSGWTCWTLWKW*LWSPGGGHWSFECQ
Trigger: CTGACACTCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCCTGAGCTCGGAGAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp GGGCTCCTGCCCATTGCTGGTGGCATGCACAACAATGAGGCCAGCTaGCCGTTGCAAGGACGTGTCCAAGACGCTGAGGATCATGGACTT +
Preference number: 1 (lower is better)
Translates to: GLLPIAGGMHNNEAS*PLQGRVQDAEDHGL
Trigger: AAGTCCATGATCCTCAGCGTCTTGGACACGTCCTTGCAACGGCCAGCTGGCCTCATTGTTGTGCATGCCACCAGCAATGGGCAGGAGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 90 bp CGAGTAGAAAAGTGTGTCCATCGGCAAAGGAGGTGTGGGTGTCCGTaGGTTCCCCACTCTCCGAGCTCAGGGTGGACATGCTGGACACTG +
Preference number: 1 (lower is better)
Translates to: RVEKCVHRQRRCGCP*VPHSPSSGWTCWTL
Trigger: CAGTGTCCAGCATGTCCACCCTGAGCTCGGAGAGTGGGGAACTCACGGACACCCACACCTCCTTTGCCGATGGACACACTTTTCTACTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp TGGACACTGTGGAAATGGTGCTTGTGGTCTCCAGGTGGGGGTCACTaGAGCTTCGAGTGTCAGCCTCCTCTACTCCAGAGTCAGCTGCAG +
Preference number: 1 (lower is better)
Translates to: WTLWKWCLWSPGGGH*SFECQPPLLQSQLQ
Trigger: CTGCAGCTGACTCTGGAGTAGAGGAGGCTGACACTCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp GTGGACATGCTGGACACTGTGGAAATGGTGCTTGTGGTCTCCAGGTaGGGGTCACTGGAGCTTCGAGTGTCAGCCTCCTCTACTCCAGAG +
Preference number: 1 (lower is better)
Translates to: VDMLDTVEMVLVVSR*GSLELRVSASSTPE
Trigger: CTCTGGAGTAGAGGAGGCTGACACTCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp GGTGGCTTCTCGAGTAGAAAAGTGTGTCCATCGGCAAAGGAGGTGTaGGTGTCCGTGAGTTCCCCACTCTCCGAGCTCAGGGTGGACATG +
Preference number: 1 (lower is better)
Translates to: GGFSSRKVCPSAKEV*VSVSSPLSELRVDM
Trigger: CATGTCCACCCTGAGCTCGGAGAGTGGGGAACTCACGGACACCCACACCTCCTTTGCCGATGGACACACTTTTCTACTCGAGAAGCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp TTTATTCAGCTGCTGCAGACGGGAGCTGAGCTCACTGATCACAGTTaGTTTGTCATCTTCAGGCCCAGGGAGCCCCCGACTCTCCACGGG +
Preference number: 1 (lower is better)
Translates to: FIQLLQTGAELTDHS*FVIFRPREPPTLHG
Trigger: CCCGTGGAGAGTCGGGGGCTCCCTGGGCCTGAAGATGACAAACCAACTGTGATCAGTGAGCTCAGCTCCCGTCTGCAGCAGCTGAATAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp TGCCCATTGCTGGTGGCATGCACAACAATGAGGCCAGCTGGCCGTTaGAAGGACGTGTCCAAGACGCTGAGGATCATGGACTTCTTGTCC +
Preference number: 1 (lower is better)
Translates to: CPLLVACTTMRPAGR*KDVSKTLRIMDFLS
Trigger: GGACAAGAAGTCCATGATCCTCAGCGTCTTGGACACGTCCTTGCAACGGCCAGCTGGCCTCATTGTTGTGCATGCCACCAGCAATGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 90 bp TCTGCTGTAGTTGCCCAAGAAGTGGGAAAGGTTAGACCCCTCCTGTaGGAGAGACCCTGTGAAGATGATGGCTGGGGTTTGGGTTACCGG +
Preference number: 1 (lower is better)
Translates to: SAVVAQEVGKVRPLL*ERPCEDDGWGLGYR
Trigger: CCGGTAACCCAAACCCCAGCCATCATCTTCACAGGGTCTCTCCCACAGGAGGGGTCTAACCTTTCCCACTTCTTGGGCAACTACAGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CCA 90 bp CCACACCCAGTTTTCACAAGCACACAGGCGTGCACACACATTATGTaGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGG +
Preference number: 1 (lower is better)
Translates to: PHPVFTSTQACTHIM*RTHTHRAGIGESLG
Trigger: CCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATGTGTGTGCACGCCTGTGTGCTTGTGAAAACTGGGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR GCA 90 bp CCACCAACTGGTTCCTCCCCCAAGGAGCGTGTGTCTTTATTCAGCTaGTGCAGACGGGAGCTGAGCTCACTGATCACAGTTGGTTTGTCA +
Preference number: 1 (lower is better)
Translates to: PPTGSSPKERVSLFS*CRRELSSLITVGLS
Trigger: TGACAAACCAACTGTGATCAGTGAGCTCAGCTCCCGTCTGCAGCAGCTGAATAAAGACACACGCTCCTTGGGGGAGGAACCAGTTGGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 90 bp CCAACTGGTTCCTCCCCCAAGGAGCGTGTGTCTTTATTCAGCTGCTaGAGACGGGAGCTGAGCTCACTGATCACAGTTGGTTTGTCATCT +
Preference number: 1 (lower is better)
Translates to: PTGSSPKERVSLFSC*RRELSSLITVGLSS
Trigger: AGATGACAAACCAACTGTGATCAGTGAGCTCAGCTCCCGTCTGCAGCAGCTGAATAAAGACACACGCTCCTTGGGGGAGGAACCAGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp GACGCTCAGGGTAGGGCAGCGGGCCCAGAGGCGTGCTCGGATCATACAGGCCGGGACGCGGGCCGGCACTaGGGCCAGAGCCGGGAGAAG +
Preference number: 2 (lower is better)
Translates to: DAQGRAAGPEACSDHTGRDAGRH*GQSREK
Trigger: CTTCTCCCGGCTCTGGCCCCAGTGCCGGCCCGCGTC...CCGGCCTGTATGATCCGAGCACGCCTCTGGGCCCGCTGCCCTACCCTGAGCGTC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp AGGTGGAGCCTGAGGGCCCAAGGCTGGGACCACCGACCAATGGCTTCAGAGCAGGGCCGGGGCCCGCGGTaGGTCGGAGAGGGTTCTCGT +
Preference number: 2 (lower is better)
Translates to: RWSLRAQGWDHRPMASEQGRGPR*VGEGSR
Trigger: ACGAGAACCCTCTCCGACGCACCGCGGGCCCCGGCC...CTGCTCTGAAGCCATTGGTCGGTGGTCCCAGCCTTGGGCCCTCAGGCTCCACCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp AGGGGGCCAGGGGACCCTCAGGAGTCTTTGCCTCTCTCCAAGGGCTGTTGTGGCGACGCGGGCCGGCACTaGGGCCAGAGCCGGGAGAAG +
Preference number: 2 (lower is better)
Translates to: RGPGDPQESLPLSKGCCGDAGRH*GQSREK
Trigger: CTTCTCCCGGCTCTGGCCCCAGTGCCGGCCCGCGTC...GCCACAACAGCCCTTGGAGAGAGGCAAAGACTCCTGAGGGTCCCCTGGCCCCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp AGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCGTAGTAGGGCGCGGGTaGGGGTGGCGGGGCGGTCTG +
Preference number: 2 (lower is better)
Translates to: RQVCAFDLMVLEAVSVLAVVGRG*GWRGGL
Trigger: CAGACCGCCCCGCCACCCCCACCCGCGCCCTACTAC...GGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGCACACCTGCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CAA 90 bp AAGCGCACTTCCTTGGGTTCGTGCGGGATGGAGAGGCTGGACGACTaGAGGATGGTGGGAGGCGTGAGGCCGAAGGGCCGCCCCGCGCCT +
Preference number: 2 (lower is better)
Translates to: KRTSLGSCGMERLDD*RMVGGVRPKGRPAP
Trigger: AGGCGCGGGGCGGCCCTTCGGCCTCACGCCTCCCACCATCCTCAAGTCGTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGTGCGCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR CAA 90 bp GAGAGGAACACAGTGGAACGGCGTCGCTCCTCCAGGCGCCGCTCCTaGACTGGGCCAGGGCTAGGGCCGCCGAAGGTAAGGCCTAGGCCT +
Preference number: 2 (lower is better)
Translates to: ERNTVERRRSSRRRS*TGPGLGPPKVRPRP
Trigger: AGGCCTAGGCCTTACCTTCGGCGGCCCTAGCCCTGGCCCAGTCAAGGAGCGGCGCCTGGAGGAGCGACGCCGTTCCACTGTGTTCCTCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCCGCCCACATCGAACTTaGTCCAGAGCTGCAGGGGCT +
Preference number: 2 (lower is better)
Translates to: PRPPGPASAQQAMPATRPRPHRT*SRAAGA
Trigger: AGCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGCG...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGCCGAGCCTGCGGCCTaGAGTAGGGGTGGGGGCCCT +
Preference number: 2 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPAEPAA*SRGGGP
Trigger: AGGGCCCCCACCCCTACTCCAGGCCGCAGGCTCGGC...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp CTAGGCCTTCTCCAGAGCTGTAGTCAAGGCTGCCTGGCCGGGGCCCGCGGTGCGGGGCCTGGGAGGCCCTaGCGCTCAAACAATGAGCTG +
Preference number: 2 (lower is better)
Translates to: LGLLQSCSQGCLAGARGAGPGRP*RSNNEL
Trigger: CAGCTCATTGTTTGAGCGCCAGGGCCTCCCAGGCCC...CGCACCGCGGGCCCCGGCCAGGCAGCCTTGACTACAGCTCTGGAGAAGGCCTAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CAA 90 bp CCAGTCGCCCACATCGAACTTGCTCCAGAGCTGCAGGGGCTTCTGTaGAAATGGCCGACGCGGGCCGGCACTGGGGCCAGAGCCGGGAGA +
Preference number: 2 (lower is better)
Translates to: PVAHIELAPELQGLL*KWPTRAGTGARAGR
Trigger: TCTCCCGGCTCTGGCCCCAGTGCCGGCCCGCGTCGGCCATTTCAACAGAAGCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGCGACTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR-3UTR TCA 90 bp TGGTGGCGCCTGTCCCCAGGAGGCGCTCATCAATGGAGCGGGAGGGTTGTAGGGGGTGGCCAACGCGTGTaGCGCCCAGCTCCACGAAGT +
Preference number: 2 (lower is better)
Translates to: WWRLSPGGAHQWSGRVVGGGQRV*RPAPRS
Trigger: ACTTCGTGGAGCTGGGCGTCACACGCGTTGGCCACC...CCCTACAACCCTCCCGCTCCATTGATGAGCGCCTCCTGGGGACAGGCGCCACCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp CGCACGCTTCTGACGCTCAGGGTAGGGCAGCGGGCCCAGAGGCGTGCTCGGATCACGAGCCTCCAGGCCTaGTTTGAAGCTGGAGCGCAC +
Preference number: 2 (lower is better)
Translates to: RTLLTLRVGQRAQRRARITSLQA*FEAGAH
Trigger: GTGCGCTCCAGCTTCAAACCAGGCCTGGAGGCTCGT...GATCCGAGCACGCCTCTGGGCCCGCTGCCCTACCCTGAGCGTCAGAAGCGTGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp AAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGGCCGAGCCTGCGGCCTaGAGTAGGGGTGGGGGCCCT +
Preference number: 2 (lower is better)
Translates to: KSSLVSAGRCAPSISWSSAEPAA*SRGGGP
Trigger: AGGGCCCCCACCCCTACTCCAGGCCGCAGGCTCGGC...CGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCTCACCAAGGAAGACTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp CGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGGGTCTGCGGCGGGGGTaGAATGCCTCGACCTTCACG +
Preference number: 2 (lower is better)
Translates to: RVTPSSTKSSLVSAGRCAGLRRG*NASTFT
Trigger: CGTGAAGGTCGAGGCATTCCACCCCCGCCGCAGACC...CGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CAA 90 bp GCGGCGGGGGTGGAATGCCTCGACCTTCACGCACTGTGTCCTGCATaGACGTGCTGCGTGGGAAGCGCCCTTCCAGTAGGGATGCCAGCT +
Preference number: 2 (lower is better)
Translates to: AAGVECLDLHALCPA*TCCVGSALPVGMPA
Trigger: AGCTGGCATCCCTACTGGAAGGGCGCTTCCCACGCAGCACGTCAATGCAGGACACAGTGCGTGAAGGTCGAGGCATTCCACCCCCGCCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CAA 90 bp AGAGGCAGCATGGTGCTGCTGGGCCATGAGCTCACTGTCCGAGGATaGCTTCAGCAGCGGGTCCCTGAAGGTCACCGGCCCCTTCCCCAG +
Preference number: 2 (lower is better)
Translates to: RGSMVLLGHELTVRG*LQQRVPEGHRPLPQ
Trigger: CTGGGGAAGGGGCCGGTGACCTTCAGGGACCCGCTGCTGAAGCAATCCTCGGACAGTGAGCTCATGGCCCAGCAGCACCATGCTGCCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp TGGTGGCGCCTGTCCCCAGGAGGCGCTCATCAATGGAGCGGGAGGGTTGTAGGGGAGCGCAGGCAGGTGTaGGCCTTCGATCTCATGGTC +
Preference number: 2 (lower is better)
Translates to: WWRLSPGGAHQWSGRVVGERRQV*AFDLMV
Trigger: GACCATGAGATCGAAGGCGCACACCTGCCTGCGCTC...CCCTACAACCCTCCCGCTCCATTGATGAGCGCCTCCTGGGGACAGGCGCCACCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCAGCCGAGCCTGCGGCCTaGAGTAGGGGTGGGGGCCCT +
Preference number: 2 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSAEPAA*SRGGGP
Trigger: AGGGCCCCCACCCCTACTCCAGGCCGCAGGCTCGGC...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCAAAGACTGGGCAGCTGTaGCGGGACCAGCGAGAGGAC +
Preference number: 2 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPKTGQL*RDQRED
Trigger: GTCCTCTCGCTGGTCCCGCCACAGCTGCCCAGTCTT...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp CGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCGGGCTGCCAGGACCCTaGCTAACCCCAGGCCAGCTG +
Preference number: 2 (lower is better)
Translates to: RLRSHGPRSGLGARLSGCGLPGP*LTPGQL
Trigger: CAGCTGGCCTGGGGTTAGCCAGGGTCCTGGCAGCCC...GCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp AGCGCAGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCATGATGGCTGGGGTTTaGGTTACCGGGGCCCAGCCC +
Preference number: 2 (lower is better)
Translates to: SAGRCAPSISWSSKRSRCMMAGV*VTGAQP
Trigger: GGGCTGGGCCCCGGTAACCCAAACCCCAGCCATCAT...GCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCCAGCCCCCAGCCTGCTaGGCTCCTGCCCATTGCTGG +
Preference number: 2 (lower is better)
Translates to: SHGPRSGLGARLSGCSPAQPPAC*APAHCW
Trigger: CCAGCAATGGGCAGGAGCCCAGCAGGCTGGGGGCTG...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp TGCCCAGGCCACCAACTGGTTCCTCCCCCAAGGAGCGTGTGTCTTTATTCAGCTGGCTGGGTACCGTGGTaGGCAAGGGGCCCGGCCCTG +
Preference number: 2 (lower is better)
Translates to: CPGHQLVPPPRSVCLYSAGWVPW*ARGPAL
Trigger: CAGGGCCGGGCCCCTTGCCCACCACGGTACCCAGCC...AGCTGAATAAAGACACACGCTCCTTGGGGGAGGAACCAGTTGGTGGCCTGGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CAA 90 bp GAGCGGCTGCGCGCACTCACACTTCGCACCACGAAGCGCACTTCCTaGGGTTCGTGCGGGATGGAGAGGCTGGACGACTTGAGGATGGTG +
Preference number: 2 (lower is better)
Translates to: ERLRALTLRTTKRTS*GSCGMERLDDLRMV
Trigger: CACCATCCTCAAGTCGTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCGTGGTGCGAAGTGTGAGTGCGCGCAGCCGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR-3UTR TCA 90 bp AGGTGGAGCCTGAGGGCCCAAGGCTGGGACCACCGACCAATGGCTTCAGAGCAGCCTCCAGGCCTGGTTTaGAGCTGGAGCGCACAGTGT +
Preference number: 2 (lower is better)
Translates to: RWSLRAQGWDHRPMASEQPPGLV*SWSAQC
Trigger: ACACTGTGCGCTCCAGCTTCAAACCAGGCCTGGAGG...CTGCTCTGAAGCCATTGGTCGGTGGTCCCAGCCTTGGGCCCTCAGGCTCCACCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCAGCTCGCCTAAGTGGATaGTCTCCAGCCAGTCGCCCA +
Preference number: 2 (lower is better)
Translates to: GTHPCMHPVQASAATSHPARLSG*SPASRP
Trigger: TGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGC...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR GCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCAGAGCGCAGGCAGGTGTaGGCCTTCGATCTCATGGTC +
Preference number: 2 (lower is better)
Translates to: GTHPCMHPVQASAATSHPERRQV*AFDLMV
Trigger: GACCATGAGATCGAAGGCGCACACCTGCCTGCGCTC...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR GCA 90 bp AGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCCCTGCATTGACGTGCTaGGTGGGAAGCGCCCTTCCA +
Preference number: 2 (lower is better)
Translates to: RQVCAFDLMVLEAVSVLAPALTC*VGSALP
Trigger: TGGAAGGGCGCTTCCCACGCAGCACGTCAATGCAGG...GGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGCACACCTGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp TGCCCAGGCCACCAACTGGTTCCTCCCCCAAGGAGCGTGTGTCTTTATTCAGCTGCCACAGCTGCTGCCTaGATGGGGGCTGGGGCCAGC +
Preference number: 2 (lower is better)
Translates to: CPGHQLVPPPRSVCLYSAATAAA*MGAGAS
Trigger: GCTGGCCCCAGCCCCCATGCAGGCAGCAGCTGTGGC...AGCTGAATAAAGACACACGCTCCTTGGGGGAGGAACCAGTTGGTGGCCTGGGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACGGTGCTCGCCTAAGTaGATGCTCTCCAGCCAGTCG +
Preference number: 2 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPRCSPK*MLSSQS
Trigger: CGACTGGCTGGAGAGCATCCACTTAGGCGAGCACCG...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCATCGATGTTCATGCGGTaGCCAACGCGTGTGACGCCC +
Preference number: 2 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPSMFMR*PTRVTP
Trigger: GGGCGTCACACGCGTTGGCCACCGCATGAACATCGA...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGTTCATGCAACATTCCTaGCCCGGGCGCCGTGGTAGG +
Preference number: 2 (lower is better)
Translates to: GFGLPGPSPRAIISQATWFMQHS*PGRRGR
Trigger: CCTACCACGGCGCCCGGGCCAGGAATGTTGCATGAA...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCATTACTGTGTGCTGGGTaGGGTTCAGCGGCAGGGGAG +
Preference number: 2 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPLLCAG*GSAAGE
Trigger: CTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAA...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp CCCATCCAGAACAGCCCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACGCCCTTACTGTGTGCTaGGTGGGGTTCAGCGGCAGG +
Preference number: 2 (lower is better)
Translates to: PIQNSPWGPLHSQAHTGHALTVC*VGFSGR
Trigger: CCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGC...GTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAATGATGGCTGGGGTTTaGGTTACCGGGGCCCAGCCC +
Preference number: 2 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPMMAGV*VTGAQP
Trigger: GGGCTGGGCCCCGGTAACCCAAACCCCAGCCATCAT...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR TCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCGGTGGCCAACGCGTGTaGCGCCCAGCTCCACGAAGT +
Preference number: 2 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTGGQRV*RPAPRS
Trigger: ACTTCGTGGAGCTGGGCGTCACACGCGTTGGCCACC...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR GCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCACTTCCTTGGGTTCGTaGGGGATGGAGAGGCTGGAC +
Preference number: 2 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPTSLGS*GMERLD
Trigger: GTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGT...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR GCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCGAAGCGGTCTCGGTaGTCGCCTAAGTGGATGCTC +
Preference number: 2 (lower is better)
Translates to: GTHPCMHPVQASAATSHPSKRSR*SPKWML
Trigger: GAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGA...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR GCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCCAGCTGCCATCCAGCTaGCTGAGCGCACGCTCGATG +
Preference number: 2 (lower is better)
Translates to: SHGPRSGLGARLSGCSPAQLPSS*LSARSM
Trigger: CATCGAGCGTGCGCTCAGGCAGCTGGATGGCAGCTG...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAAGCTGGAGTGTCCCCTaGCCTGTATGGGGTGGCAGT +
Preference number: 2 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPSWSVP*PVWGGS
Trigger: ACTGCCACCCCATACAGGGCAGGGGACACTCCAGCT...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR GCA 90 bp CCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACGCCCCTGGGGACCACTaGACAGTCAAGCACACACAG +
Preference number: 2 (lower is better)
Translates to: PMHAPCASFCRHLPPIQNAPGDH*TVKHTQ
Trigger: CTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGC...GTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCCCCCCTCTGGAAGAATaGCCACCAGGAGCTATGGAG +
Preference number: 2 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPPPLEE*PPGAME
Trigger: CTCCATAGCTCCTGGTGGCCATTCTTCCAGAGGGGG...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
62% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCACCTGACCTCGCATGCTaGACTAGGTTCCCCCTCTGG +
Preference number: 2 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPPDLAC*TRFPLW
Trigger: CCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGG...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGAATTGGGGAGTCTTTaGGGTGCGAGGCAGGGAGGC +
Preference number: 2 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPELGSL*GARQGG
Trigger: GCCTCCCTGCCTCGCACCCCAAAGACTCCCCAATTC...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp AGGGGAGAAGGCTGGGGAAGCCAACGGTCCTCTCTCAGAGTCTCGGGTTTGCACCAGCTTCTCTGGGCCTaGGAGGCCCTGGCGCTCAAA +
Preference number: 2 (lower is better)
Translates to: RGEGWGSQRSSLRVSGLHQLLWA*EALALK
Trigger: TTTGAGCGCCAGGGCCTCCCAGGCCCAGAGAAGCTG...GTGCAAACCCGAGACTCTGAGAGAGGACCGTTGGCTTCCCCAGCCTTCTCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp CGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCCCGAGGGGAGAAGGCTaGGGAAGCCAACGGTCCTCT +
Preference number: 2 (lower is better)
Translates to: RLRSHGPRSGLGARLSGCPRGEG*GSQRSS
Trigger: AGAGGACCGTTGGCTTCCCCAGCCTTCTCCCCTCGG...GCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CAA 90 bp CGGGCAGCCAGAGCAAGAGCTAAGGGTGAGCTAGGATCCAAGGGTTaGCCAGTGAGAGGGTGGATGAAGGTGGAGCCTGAGGGCCCAAGG +
Preference number: 2 (lower is better)
Translates to: RAARARAKGELGSKG*PVRGWMKVEPEGPR
Trigger: CCTTGGGCCCTCAGGCTCCACCTTCATCCACCCTCTCACTGGCAAACCCTTGGATCCTAGCTCACCCTTAGCTCTTGCTCTGGCTGCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CAA 90 bp TTCAGCTGCTGCAGACGGGAGCTGAGCTCACTGATCACAGTTGGTTaGTCATCTTCAGGCCCAGGGAGCCCCCGACTCTCCACGGGGTCC +
Preference number: 2 (lower is better)
Translates to: FSCCRRELSSLITVG*SSSGPGSPRLSTGS
Trigger: GGACCCCGTGGAGAGTCGGGGGCTCCCTGGGCCTGAAGATGACAAACCAACTGTGATCAGTGAGCTCAGCTCCCGTCTGCAGCAGCTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR TCA 90 bp CGTGAGTTCCCCACTCTCCGAGCTCAGGGTGGACATGCTGGACACTGTGGAAATGATGAAGGTGGAGCCTaGGGGCCCAAGGCTGGGACC +
Preference number: 2 (lower is better)
Translates to: REFPTLRAQGGHAGHCGNDEGGA*GPKAGT
Trigger: GGTCCCAGCCTTGGGCCCTCAGGCTCCACCTTCATC...ATTTCCACAGTGTCCAGCATGTCCACCCTGAGCTCGGAGAGTGGGGAACTCACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR TCA 90 bp TGCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTGCTCCAGTCCTCTGAGCTGCCTTaGCCTGGCCCGGGATCTGCT +
Preference number: 2 (lower is better)
Translates to: CSPKWMLSSQSPTSNLLQSSELP*PGPGSA
Trigger: AGCAGATCCCGGGCCAGGTCAAGGCAGCTCAGAGGA...CTGGAGCAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCTTCATGCAACATTCCTaGCCCGGGCGCCGTGGTAGG +
Preference number: 2 (lower is better)
Translates to: SHGPRSGLGARLSGCSPAFMQHS*PGRRGR
Trigger: CCTACCACGGCGCCCGGGCCAGGAATGTTGCATGAA...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR CAA 90 bp GGCCGTTGCAAGGACGTGTCCAAGACGCTGAGGATCATGGACTTCTaGTCCTCTGGTGACTTCCGCTCTTCCCGAGGGGGCTTCTCTGCC +
Preference number: 2 (lower is better)
Translates to: GRCKDVSKTLRIMDF*SSGDFRSSRGGFSA
Trigger: GGCAGAGAAGCCCCCTCGGGAAGAGCGGAAGTCACCAGAGGACAAGAAGTCCATGATCCTCAGCGTCTTGGACACGTCCTTGCAACGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR TCA 90 bp TGCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTGCTCCAGTGCCATCCAGCTGCCTaGGCGCACGCTCGATGTTCA +
Preference number: 2 (lower is better)
Translates to: CSPKWMLSSQSPTSNLLQCHPAA*AHARCS
Trigger: TGAACATCGAGCGTGCGCTCAGGCAGCTGGATGGCA...CTGGAGCAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR-3UTR TCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCTGTATGGGGTGGCAGTaGGGGGCCAGAGATGGAAGA +
Preference number: 2 (lower is better)
Translates to: SHGPRSGLGARLSGCSPACMGWQ*GARDGR
Trigger: TCTTCCATCTCTGGCCCCTCACTGCCACCCCATACA...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR TCA 90 bp AAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGCACTGTGTCCTGCATTaGCGTGCTGCGTGGGAAGCG +
Preference number: 2 (lower is better)
Translates to: KSSLVSAGRCAPSISWSSHCVLH*RAAWEA
Trigger: CGCTTCCCACGCAGCACGTCAATGCAGGACACAGTG...CGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCTCACCAAGGAAGACTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR TCA 90 bp TGCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTGCTCCAGGGTGCTGCTGGGCCATaGGCTCACTGTCCGAGGATT +
Preference number: 2 (lower is better)
Translates to: CSPKWMLSSQSPTSNLLQGAAGP*AHCPRI
Trigger: AATCCTCGGACAGTGAGCTCATGGCCCAGCAGCACC...CTGGAGCAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGGTGAGGGGGAGCGGCTaGGCGCACTCACACTTCGCA +
Preference number: 2 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVVRGSG*AHSHFA
Trigger: TGCGAAGTGTGAGTGCGCGCAGCCGCTCCCCCTCAC...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR GCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGAAACAGGACGATTCATaGAACATTCCTGGCCCGGGC +
Preference number: 2 (lower is better)
Translates to: GFGLPGPSPRAIISQATWKQDDS*NIPGPG
Trigger: GCCCGGGCCAGGAATGTTGCATGAATCGTCCTGTTT...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp CGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCCGAAGCGCACTTCCTTaGGTTCGTGCGGGATGGAGA +
Preference number: 2 (lower is better)
Translates to: RLRSHGPRSGLGARLSGCRSALP*VRAGWR
Trigger: TCTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCG...GCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp AGGGGAGAAGGCTGGGGAAGCCAACGGTCCTCTCTCAGAGTCTCGGGTTTGCACCGAAGCGCACTTCCTTaGGTTCGTGCGGGATGGAGA +
Preference number: 2 (lower is better)
Translates to: RGEGWGSQRSSLRVSGLHRSALP*VRAGWR
Trigger: TCTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCG...GTGCAAACCCGAGACTCTGAGAGAGGACCGTTGGCTTCCCCAGCCTTCTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCGCGCCTTCGATCTCATaGTCCTCGAAGCGGTCTCGG +
Preference number: 2 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTAPSIS*SSKRSR
Trigger: CCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGC...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp GGGTGGACATGCTGGACACTGTGGAAATGGTGCTTGTGGTCTCCAGGTGGGGGTTCGATGTTCATGCGGTaGCCAACGCGTGTGACGCCC +
Preference number: 2 (lower is better)
Translates to: GWTCWTLWKWCLWSPGGGSMFMR*PTRVTP
Trigger: GGGCGTCACACGCGTTGGCCACCGCATGAACATCGA...ACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCAGCCCTTACTGTGTGCTaGGTGGGGTTCAGCGGCAGG +
Preference number: 2 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSALTVC*VGFSGR
Trigger: CCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGC...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACACTAGGTTCCCCCTCTaGAAGAATGGCCACCAGGAG +
Preference number: 2 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHTRFPL*KNGHQE
Trigger: CTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGT...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CAA 90 bp TCTCCGAGCTCAGGGTGGACATGCTGGACACTGTGGAAATGGTGCTaGTGGTCTCCAGGTGGGGGTCACTGGAGCTTCGAGTGTCAGCCT +
Preference number: 2 (lower is better)
Translates to: SPSSGWTCWTLWKWC*WSPGGGHWSFECQP
Trigger: AGGCTGACACTCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCCTGAGCTCGGAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp TCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTGACTTCCTTGGGTTCGTaGGGGATGGAGAGGCTGGAC +
Preference number: 2 (lower is better)
Translates to: SRCSPKWMLSSQSPTSNLTSLGS*GMERLD
Trigger: GTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGT...CAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGCACCGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp GGGTGGACATGCTGGACACTGTGGAAATGGTGCTTGTGGTCTCCAGGTGGGGGTTCGAAGCGGTCTCGGTaGTCGCCTAAGTGGATGCTC +
Preference number: 2 (lower is better)
Translates to: GWTCWTLWKWCLWSPGGGSKRSR*SPKWML
Trigger: GAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGA...ACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp CGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTGGCGCAGAGTCCTaGAGTATGATCATGGAGCGC +
Preference number: 2 (lower is better)
Translates to: RLRSHGPRSGLGARLSGCSGAES*SMIMER
Trigger: GCGCTCCATGATCATACTGCAGGACTCTGCGCCAGA...GCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCAGAACAGGAGAGGGAGTaGGGCGTCAGCTGCCATCCA +
Preference number: 2 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSEQERE*GVSCHP
Trigger: TGGATGGCAGCTGACGCCCCACTCCCTCTCCTGTTC...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp CGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCACTAGGTTCCCCCTCTaGAAGAATGGCCACCAGGAG +
Preference number: 2 (lower is better)
Translates to: RLRSHGPRSGLGARLSGCTRFPL*KNGHQE
Trigger: CTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGT...GCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp CCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACGTTAGACCCCTCCTGTaGGAGAGACCCTGTGAAGAT +
Preference number: 2 (lower is better)
Translates to: PMHAPCASFCRHLPPIQNVRPLL*ERPCED
Trigger: ATCTTCACAGGGTCTCTCCCACAGGAGGGGTCTAAC...GTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp GCCAACGGTCCTCTCTCAGAGTCTCGGGTTTGCACATCCACAAAGAGGGGTCCAGAGGGCTGCCCTCGATaGCACCCACAGAGAGGAACA +
Preference number: 2 (lower is better)
Translates to: ANGPLSESRVCTSTKRGPEGCPR*HPQRGT
Trigger: TGTTCCTCTCTGTGGGTGCCATCGAGGGCAGCCCTC...TGGACCCCTCTTTGTGGATGTGCAAACCCGAGACTCTGAGAGAGGACCGTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCTTGCCAGTGAGAGGGTaGATGAAGGTGGAGCCTGAG +
Preference number: 2 (lower is better)
Translates to: SHGPRSGLGARLSGCSPALPVRG*MKVEPE
Trigger: CTCAGGCTCCACCTTCATCCACCCTCTCACTGGCAA...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp ATTCAGCTGCTGCAGACGGGAGCTGAGCTCACTGATCACAGTTGGTTTGTCATCGTGAGGGGGAGCGGCTaGGCGCACTCACACTTCGCA +
Preference number: 2 (lower is better)
Translates to: IQLLQTGAELTDHSWFVIVRGSG*AHSHFA
Trigger: TGCGAAGTGTGAGTGCGCGCAGCCGCTCCCCCTCAC...GATGACAAACCAACTGTGATCAGTGAGCTCAGCTCCCGTCTGCAGCAGCTGAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACTTCTCTGCTGTAGTTaGCCAAGAAGTGGGAAAGGT +
Preference number: 2 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPLLCCS*PRSGKG
Trigger: ACCTTTCCCACTTCTTGGGCAACTACAGCAGAGAAG...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR GCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCACAAGCACACAGGCGTaGACACACATTATGTGGCGC +
Preference number: 2 (lower is better)
Translates to: SHGPRSGLGARLSGCSPATSTQA*THIMWR
Trigger: GCGCCACATAATGTGTGTGCACGCCTGTGTGCTTGT...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp AAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGGCCCTTACTGTGTGCTaGGTGGGGTTCAGCGGCAGG +
Preference number: 2 (lower is better)
Translates to: KGFTKNPCLSWVRFGEEGALTVC*VGFSGR
Trigger: CCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGC...CCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCAGAGCTATGGAGGAAGTaGTCAGGCCAGAGCACCCTG +
Preference number: 2 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSELWRK*SGQSTL
Trigger: CAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTC...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCACCCCCTCTGGAAGAATaGCCACCAGGAGCTATGGAG +
Preference number: 2 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSPPLEE*PPGAME
Trigger: CTCCATAGCTCCTGGTGGCCATTCTTCCAGAGGGGG...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGAAGACTGGGCAGCTGTaGCGGGACCAGCGAGAGGAC +
Preference number: 2 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGKTGQL*RDQRED
Trigger: GTCCTCTCGCTGGTCCCGCCACAGCTGCCCAGTCTT...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp AAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGAAGACTGGGCAGCTGTaGCGGGACCAGCGAGAGGAC +
Preference number: 2 (lower is better)
Translates to: KGFTKNPCLSWVRFGEEGKTGQL*RDQRED
Trigger: GTCCTCTCGCTGGTCCCGCCACAGCTGCCCAGTCTT...CCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp GGGTGGACATGCTGGACACTGTGGAAATGGTGCTTGTGGTCTCCAGGTGGGGGTCCTCCCCTACAGATTTaGTCCGTGGAATCCCCTTCC +
Preference number: 2 (lower is better)
Translates to: GWTCWTLWKWCLWSPGGGPPLQI*SVESPS
Trigger: GGAAGGGGATTCCACGGACCAAATCTGTAGGGGAGG...ACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CAA 90 bp CTGCCCATTGCTGGTGGCATGCACAACAATGAGGCCAGCTGGCCGTaGCAAGGACGTGTCCAAGACGCTGAGGATCATGGACTTCTTGTC +
Preference number: 2 (lower is better)
Translates to: LPIAGGMHNNEASWP*QGRVQDAEDHGLLV
Trigger: GACAAGAAGTCCATGATCCTCAGCGTCTTGGACACGTCCTTGCAACGGCCAGCTGGCCTCATTGTTGTGCATGCCACCAGCAATGGGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR TCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCACGTGTCCAAGACGCTaGGGATCATGGACTTCTTGT +
Preference number: 2 (lower is better)
Translates to: SHGPRSGLGARLSGCSPATCPRR*GSWTSC
Trigger: ACAAGAAGTCCATGATCCTCAGCGTCTTGGACACGT...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CCA 90 bp AAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGTTACTGTGTGCTGGGTaGGGTTCAGCGGCAGGGGAG +
Preference number: 2 (lower is better)
Translates to: KGFTKNPCLSWVRFGEEGLLCAG*GSAAGE
Trigger: CTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAA...CCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGTTACTGTGTGCTGGGTaGGGTTCAGCGGCAGGGGAG +
Preference number: 2 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGLLCAG*GSAAGE
Trigger: CTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAA...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACAGAGCTATGGAGGAAGTaGTCAGGCCAGAGCACCCTG +
Preference number: 2 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTELWRK*SGQSTL
Trigger: CAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTC...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR CCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACAACTAGGTTCCCCCTCTaGAAGAATGGCCACCAGGAG +
Preference number: 2 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTTRFPL*KNGHQE
Trigger: CTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGT...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR-3UTR TCA 90 bp TGCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTGCTCCAGACAGAAACTTGTGAGTaGCGTGGATGGAGCTTAGTC +
Preference number: 2 (lower is better)
Translates to: CSPKWMLSSQSPTSNLLQTETCE*RGWSLV
Trigger: GACTAAGCTCCATCCACGTCACTCACAAGTTTCTGT...CTGGAGCAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CCA 90 bp TGCCCAGGCCACCAACTGGTTCCTCCCCCAAGGAGCGTGTGTCTTTATTCAGCTTACAGATTTGGTCCGTaGAATCCCCTTCCGCAGAGA +
Preference number: 2 (lower is better)
Translates to: CPGHQLVPPPRSVCLYSAYRFGP*NPLPQR
Trigger: TCTCTGCGGAAGGGGATTCCACGGACCAAATCTGTA...AGCTGAATAAAGACACACGCTCCTTGGGGGAGGAACCAGTTGGTGGCCTGGGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR GCA 90 bp AAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGAAACAGGACGATTCATaGAACATTCCTGGCCCGGGC +
Preference number: 2 (lower is better)
Translates to: KGFTKNPCLSWVRFGEEGKQDDS*NIPGPG
Trigger: GCCCGGGCCAGGAATGTTGCATGAATCGTCCTGTTT...CCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CCA 72 bp AGGGACTATCAGGGCCTGACGGCCGAGGCCGGCGCTTaGGGCGCTCAGGCGGTGTGGCGGCAGGCGCAGGCC +
Preference number: 3 (lower is better)
Translates to: RDYQGLTAEAGA*GAQAVWRQAQA
Trigger: GGCCTGCGCCTGCCGCCACACCGCCTGAGCGCCCCAAGCGCCGGCCTCGGCCGTCAGGCCCTGATAGTCCCT
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp CATAGGCCCGGCCCGGTGGTGGCGGCGGTGAGAAGGTaGGGGGTGGCCCGGAGTCGAAGTAGTAGGGCGCGG +
Preference number: 3 (lower is better)
Translates to: HRPGPVVAAVRR*GVARSRSSRAR
Trigger: CCGCGCCCTACTACTTCGACTCCGGGCCACCCCCCACCTTCTCACCGCCGCCACCACCGGGCCGGGCCTATG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp TCTGACGCTCAGGGTAGGGCAGCGGGCCCAGAGGCGTaGTCGGATCATACAGGCCGGCGGCCCCCGCACCCA +
Preference number: 3 (lower is better)
Translates to: SDAQGRAAGPEA*SDHTGRRPPHP
Trigger: TGGGTGCGGGGGCCGCCGGCCTGTATGATCCGAGCACGCCTCTGGGCCCGCTGCCCTACCCTGAGCGTCAGA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp CGTCGGAGAGGGTTCTCGTGCAAAGCTTCCGCCCACTaGTCCCGGGCTACCCACGGCCAGGGCCGCGCGCTC +
Preference number: 3 (lower is better)
Translates to: RRRGFSCKASAH*SRATHGQGRAL
Trigger: GAGCGCGCGGCCCTGGCCGTGGGTAGCCCGGGACCAGTGGGCGGAAGCTTTGCACGAGAACCCTCTCCGACG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 72 bp CGGCCCCCGCACCCAGACGAGCCTCCAGGCCTGGTTTaGAGCTGGAGCGCACAGTGTCATAGGCCCGGCCCG +
Preference number: 3 (lower is better)
Translates to: RPPHPDEPPGLV*SWSAQCHRPGP
Trigger: CGGGCCGGGCCTATGACACTGTGCGCTCCAGCTTCAAACCAGGCCTGGAGGCTCGTCTGGGTGCGGGGGCCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp CATGGGCTCTGCCACAGCTGCTGCCTGCATGGGGGCTaGGGCCAGCTCCGGAGTACCGGGGCGCTCCTCTTC +
Preference number: 3 (lower is better)
Translates to: HGLCHSCCLHGG*GQLRSTGALLF
Trigger: GAAGAGGAGCGCCCCGGTACTCCGGAGCTGGCCCCAGCCCCCATGCAGGCAGCAGCTGTGGCAGAGCCCATG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CAA 90 bp CAAGGCTGCCTGGCCGGGGCCCGCGGTGCGTCGGAGAGGGTTCTCGTGCAAAGCACGAAGCGCACTTCCTaGGGTTCGTGCGGGATGGAG +
Preference number: 3 (lower is better)
Translates to: QGCLAGARGASERVLVQSTKRTS*GSCGME
Trigger: CTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCGT...GCTTTGCACGAGAACCCTCTCCGACGCACCGCGGGCCCCGGCCAGGCAGCCTTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp CAGGACAGGGCCCCTTCCCGGGCACACACCCATGCATaGACCCTGTGCAAGCTTCTGCCGCCACCTCCCACC +
Preference number: 3 (lower is better)
Translates to: QDRAPSRAHTHA*TLCKLLPPPPT
Trigger: GGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCCCGGGAAGGGGCCCTGTCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR GCA 72 bp CCAGCAGGACAGGGCCCCTTCCCGGGCACACACCCATaGATGCACCCTGTGCAAGCTTCTGCCGCCACCTCC +
Preference number: 3 (lower is better)
Translates to: PAGQGPFPGTHP*MHPVQASAATS
Trigger: GGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCCCGGGAAGGGGCCCTGTCCTGCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CCA 72 bp GGCGGCAGGCGCAGGCCGGGGGACATCACCCACTTCTaGCGCAGAGTCCTGCAGTATGATCATGGAGCGCGC +
Preference number: 3 (lower is better)
Translates to: GGRRRPGDITHF*RRVLQYDHGAR
Trigger: GCGCGCTCCATGATCATACTGCAGGACTCTGCGCCAGAAGTGGGTGATGTCCCCCGGCCTGCGCCTGCCGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CAA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCTCCACGAAGTCTTCCTaGGTGAGCGCAGGCAGGTGT +
Preference number: 3 (lower is better)
Translates to: PRPPGPASAQQAMPATRPSTKSS*VSAGRC
Trigger: ACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGA...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CAA 90 bp CAAGGCTGCCTGGCCGGGGCCCGCGGTGCGTCGGAGAGGGTTCTCGTGCAAAGCTCCACGAAGTCTTCCTaGGTGAGCGCAGGCAGGTGT +
Preference number: 3 (lower is better)
Translates to: QGCLAGARGASERVLVQSSTKSS*VSAGRC
Trigger: ACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGA...GCTTTGCACGAGAACCCTCTCCGACGCACCGCGGGCCCCGGCCAGGCAGCCTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp AAGGCGAGGGCAGCGGAGATGGTGAGGGGGAGCGGCTaGGCGCACTCACACTTCGCACCACGAAGCGCACTT +
Preference number: 3 (lower is better)
Translates to: KARAAEMVRGSG*AHSHFAPRSAL
Trigger: AAGTGCGCTTCGTGGTGCGAAGTGTGAGTGCGCGCAGCCGCTCCCCCTCACCATCTCCGCTGCCCTCGCCTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR CCA 72 bp TGGAGCGGGAGGGTTGTAGGGATGGCAGATCCGCGCTaGGAGGGCTGCCCTCGATGGCACCCACAGAGAGGA +
Preference number: 3 (lower is better)
Translates to: WSGRVVGMADPR*EGCPRWHPQRG
Trigger: TCCTCTCTGTGGGTGCCATCGAGGGCAGCCCTCCCAGCGCGGATCTGCCATCCCTACAACCCTCCCGCTCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp ATCTCAGCAGGGGTGATCCTCCGGCTGGTGGGCCGCTaGTTGACAGTGGCCGCCCTCGAGTCAGCATCTGCA +
Preference number: 3 (lower is better)
Translates to: ISAGVILRLVGR*LTVAALESASA
Trigger: TGCAGATGCTGACTCGAGGGCGGCCACTGTCAAGCAGCGGCCCACCAGCCGGAGGATCACCCCTGCTGAGAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp TGGTGCTGCTGGGCCATGAGCTCACTGTCCGAGGATTaGTTCAGCAGCGGGTCCCTGAAGGTCACCGGCCCC +
Preference number: 3 (lower is better)
Translates to: WCCWAMSSLSED*FSSGSLKVTGP
Trigger: GGGGCCGGTGACCTTCAGGGACCCGCTGCTGAAGCAATCCTCGGACAGTGAGCTCATGGCCCAGCAGCACCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp GAGTACCGGGGCGCTCCTCTTCAGCCCCCAGCCTGCTaGGCTCCTGCCCATTGCTGGTGGCATGCACAACAA +
Preference number: 3 (lower is better)
Translates to: EYRGAPLQPPAC*APAHCWWHAQQ
Trigger: TTGTTGTGCATGCCACCAGCAATGGGCAGGAGCCCAGCAGGCTGGGGGCTGAAGAGGAGCGCCCCGGTACTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CAA 90 bp AGGGGGCCAGGGGACCCTCAGGAGTCTTTGCCTCTCTCCAAGGGCTGTTGTGGCGAGAGGCTGGACGACTaGAGGATGGTGGGAGGCGTG +
Preference number: 3 (lower is better)
Translates to: RGPGDPQESLPLSKGCCGERLDD*RMVGGV
Trigger: CACGCCTCCCACCATCCTCAAGTCGTCCAGCCTCTC...GCCACAACAGCCCTTGGAGAGAGGCAAAGACTCCTGAGGGTCCCCTGGCCCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR-3UTR CAA 90 bp CGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGGAGAGGCTGGACGACTaGAGGATGGTGGGAGGCGTG +
Preference number: 3 (lower is better)
Translates to: RVTPSSTKSSLVSAGRCAERLDD*RMVGGV
Trigger: CACGCCTCCCACCATCCTCAAGTCGTCCAGCCTCTC...CGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR-3UTR CAA 90 bp TCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTGCTGGTGGGCCGCTGCTaGACAGTGGCCGCCCTCGAG +
Preference number: 3 (lower is better)
Translates to: SRCSPKWMLSSQSPTSNLLVGRC*TVAALE
Trigger: CTCGAGGGCGGCCACTGTCAAGCAGCGGCCCACCAG...CAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGCACCGAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 72 bp GGCGCTGTGGTTTCGACGGAGCGAAGAGGCTGGCACTaGAGGCGCCCAGGTTGGCATAGGGACTATCAGGGC +
Preference number: 3 (lower is better)
Translates to: GAVVSTERRGWH*RRPGWHRDYQG
Trigger: GCCCTGATAGTCCCTATGCCAACCTGGGCGCCTTCAGTGCCAGCCTCTTCGCTCCGTCGAAACCACAGCGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 72 bp ACCGAGGCTGCTGAAGAGCCGAGCTGCTGCAATGGGTaGCTTCTTAGCAGGGTCCAGCAGGCTGCCCAGGCC +
Preference number: 3 (lower is better)
Translates to: TEAAEEPSCCNG*LLSRVQQAAQA
Trigger: GGCCTGGGCAGCCTGCTGGACCCTGCTAAGAAGTCACCCATTGCAGCAGCTCGGCTCTTCAGCAGCCTCGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp ACCTCCCACCCATCCAGAACAGCCCCTGGGGACCACTaGACAGTCAAGCACACACAGGGCACCCATGCGCTC +
Preference number: 3 (lower is better)
Translates to: TSHPSRTAPGDH*TVKHTQGTHAL
Trigger: GAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGGTGGGAGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR GCA 72 bp AGGGTTGTAGGGATGGCAGATCCGCGCTGGGAGGGCTaGCCTCGATGGCACCCACAGAGAGGAACACAGTGG +
Preference number: 3 (lower is better)
Translates to: RVVGMADPRWEG*PRWHPQRGTQW
Trigger: CCACTGTGTTCCTCTCTGTGGGTGCCATCGAGGGCAGCCCTCCCAGCGCGGATCTGCCATCCCTACAACCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp CTGAAGCTGCTTCACCAGCGGGCTCTTGCGGCGCTGTaGTTTCGACGGAGCGAAGAGGCTGGCACTGAAGGC +
Preference number: 3 (lower is better)
Translates to: LKLLHQRALAAL*FRRSEEAGTEG
Trigger: GCCTTCAGTGCCAGCCTCTTCGCTCCGTCGAAACCACAGCGCCGCAAGAGCCCGCTGGTGAAGCAGCTTCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CAA 90 bp CGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGACGAAGCGCACTTCCTaGGGTTCGTGCGGGATGGAG +
Preference number: 3 (lower is better)
Translates to: RVTPSSTKSSLVSAGRCATKRTS*GSCGME
Trigger: CTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCGT...CGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR-3UTR CAA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACTCGCCCACATCGAACTaGCTCCAGAGCTGCAGGGGC +
Preference number: 3 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHSPTSN*LQSCRG
Trigger: GCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGCGA...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
3UTR GCA 72 bp GGGGGTGGAATGCCTCGACCTTCACGCACTGTGTCCTaGATTGACGTGCTGCGTGGGAAGCGCCCTTCCAGT +
Preference number: 3 (lower is better)
Translates to: GGGMPRPSRTVS*IDVLRGKRPSS
Trigger: ACTGGAAGGGCGCTTCCCACGCAGCACGTCAATGCAGGACACAGTGCGTGAAGGTCGAGGCATTCCACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp TTGGTGAGCGCAGGCAGGTGTGCGCCTTCGATCTCATaGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGG +
Preference number: 3 (lower is better)
Translates to: LVSAGRCAPSIS*SSKRSRCSPKW
Trigger: CCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCTCACCAA
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR CCA 72 bp CACTGGAATCCACGCTGGACTCCGAGGGGAGAAGGCTaGGGAAGCCAACGGTCCTCTCTCAGAGTCTCGGGT +
Preference number: 3 (lower is better)
Translates to: HWNPRWTPRGEG*GSQRSSLRVSG
Trigger: ACCCGAGACTCTGAGAGAGGACCGTTGGCTTCCCCAGCCTTCTCCCCTCGGAGTCCAGCGTGGATTCCAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CAA 90 bp CGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCGCACTGTGTCCTGCATaGACGTGCTGCGTGGGAAGC +
Preference number: 3 (lower is better)
Translates to: RLRSHGPRSGLGARLSGCALCPA*TCCVGS
Trigger: GCTTCCCACGCAGCACGTCAATGCAGGACACAGTGC...GCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CAA 90 bp AAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGGCCTCCAGGCCTGGTTaGAAGCTGGAGCGCACAGTG +
Preference number: 3 (lower is better)
Translates to: KSSLVSAGRCAPSISWSSASRPG*KLERTV
Trigger: CACTGTGCGCTCCAGCTTCAAACCAGGCCTGGAGGC...CGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCTCACCAAGGAAGACTT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp CTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTaGGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCG +
Preference number: 3 (lower is better)
Translates to: LHEVFLGERRQV*AFDLMVLEAVS
Trigger: CGAGACCGCTTCGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR GCA 72 bp GGCAAGTCTCCAAGCAACAGCAAACAGGACGATTCATaGAACATTCCTGGCCCGGGCGCCGTGGTAGGGGGC +
Preference number: 3 (lower is better)
Translates to: GKSPSNSKQDDS*NIPGPGAVVGG
Trigger: GCCCCCTACCACGGCGCCCGGGCCAGGAATGTTGCATGAATCGTCCTGTTTGCTGTTGCTTGGAGACTTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR GCA 72 bp CTCGACCTTCACGCACTGTGTCCTGCATTGACGTGCTaGGTGGGAAGCGCCCTTCCAGTAGGGATGCCAGCT +
Preference number: 3 (lower is better)
Translates to: LDLHALCPALTC*VGSALPVGMPA
Trigger: AGCTGGCATCCCTACTGGAAGGGCGCTTCCCACGCAGCACGTCAATGCAGGACACAGTGCGTGAAGGTCGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp TGCCTCGACCTTCACGCACTGTGTCCTGCATTGACGTaGTGCGTGGGAAGCGCCCTTCCAGTAGGGATGCCA +
Preference number: 3 (lower is better)
Translates to: CLDLHALCPALT*CVGSALPVGMP
Trigger: TGGCATCCCTACTGGAAGGGCGCTTCCCACGCAGCACGTCAATGCAGGACACAGTGCGTGAAGGTCGAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp GGGGAAGCCAACGGTCCTCTCTCAGAGTCTCGGGTTTaGACATCCACAAAGAGGGGTCCAGGGCGGTCAGCA +
Preference number: 3 (lower is better)
Translates to: GEANGPLSESRV*TSTKRGPGRSA
Trigger: TGCTGACCGCCCTGGACCCCTCTTTGTGGATGTGCAAACCCGAGACTCTGAGAGAGGACCGTTGGCTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp CATTGGCAAACTCTTCAGGGGGTGGCACTAGCCCTATaGGGGCCAGCTCCTCTCTGGTCTCCTCATCGCTGG +
Preference number: 3 (lower is better)
Translates to: HWQTLQGVALAL*GPAPLWSPHRW
Trigger: CCAGCGATGAGGAGACCAGAGAGGAGCTGGCCCGCATAGGGCTAGTGCCACCCCCTGAAGAGTTTGCCAATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp CCAGCAGCAGAAGCCAACCCAGTAGAGGCAGCATGGTaGTGCTGGGCCATGAGCTCACTGTCCGAGGATTGC +
Preference number: 3 (lower is better)
Translates to: PAAEANPVEAAW*CWAMSSLSEDC
Trigger: GCAATCCTCGGACAGTGAGCTCATGGCCCAGCAGCACCATGCTGCCTCTACTGGGTTGGCTTCTGCTGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp CCGAGCTCAGGGTGGACATGCTGGACACTGTGGAAATaGTGCTTGTGGTCTCCAGGTGGGGGTCACTGGAGC +
Preference number: 3 (lower is better)
Translates to: PSSGWTCWTLWK*CLWSPGGGHWS
Trigger: GCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCCTGAGCTCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 72 bp TGGGCTCCTGCCCATTGCTGGTGGCATGCACAACAATaGGGCCAGCTGGCCGTTGCAAGGACGTGTCCAAGA +
Preference number: 3 (lower is better)
Translates to: WAPAHCWWHAQQ*GQLAVARTCPR
Trigger: TCTTGGACACGTCCTTGCAACGGCCAGCTGGCCTCATTGTTGTGCATGCCACCAGCAATGGGCAGGAGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 72 bp AAGTGTGTCCATCGGCAAAGGAGGTGTGGGTGTCCGTaGGTTCCCCACTCTCCGAGCTCAGGGTGGACATGC +
Preference number: 3 (lower is better)
Translates to: KCVHRQRRCGCP*VPHSPSSGWTC
Trigger: GCATGTCCACCCTGAGCTCGGAGAGTGGGGAACTCACGGACACCCACACCTCCTTTGCCGATGGACACACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp ACACTTCGCACCACGAAGCGCACTTCCTTGGGTTCGTaGGGGATGGAGAGGCTGGACGACTTGAGGATGGTG +
Preference number: 3 (lower is better)
Translates to: TLRTTKRTSLGS*GMERLDDLRMV
Trigger: CACCATCCTCAAGTCGTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCGTGGTGCGAAGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR GCA 72 bp GCAGCAGAAGCCAACCCAGTAGAGGCAGCATGGTGCTaGTGGGCCATGAGCTCACTGTCCGAGGATTGCTTC +
Preference number: 3 (lower is better)
Translates to: AAEANPVEAAWC*WAMSSLSEDCF
Trigger: GAAGCAATCCTCGGACAGTGAGCTCATGGCCCAGCAGCACCATGCTGCCTCTACTGGGTTGGCTTCTGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp TGCCAGCTTCTCATCCTCCCCTACAGATTTGGTCCGTaGAATCCCCTTCCGCAGAGAGCCCGGCAGCTTCTC +
Preference number: 3 (lower is better)
Translates to: CQLLILPYRFGP*NPLPQRARQLL
Trigger: GAGAAGCTGCCGGGCTCTCTGCGGAAGGGGATTCCACGGACCAAATCTGTAGGGGAGGATGAGAAGCTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp CACTCTCCGAGCTCAGGGTGGACATGCTGGACACTGTaGAAATGGTGCTTGTGGTCTCCAGGTGGGGGTCAC +
Preference number: 3 (lower is better)
Translates to: HSPSSGWTCWTL*KWCLWSPGGGH
Trigger: GTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCCTGAGCTCGGAGAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp GCAGAAGCCAACCCAGTAGAGGCAGCATGGTGCTGCTaGGCCATGAGCTCACTGTCCGAGGATTGCTTCAGC +
Preference number: 3 (lower is better)
Translates to: AEANPVEAAWCC*AMSSLSEDCFS
Trigger: GCTGAAGCAATCCTCGGACAGTGAGCTCATGGCCCAGCAGCACCATGCTGCCTCTACTGGGTTGGCTTCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp CTGCTGCAGACGGGAGCTGAGCTCACTGATCACAGTTaGTTTGTCATCTTCAGGCCCAGGGAGCCCCCGACT +
Preference number: 3 (lower is better)
Translates to: LLQTGAELTDHS*FVIFRPREPPT
Trigger: AGTCGGGGGCTCCCTGGGCCTGAAGATGACAAACCAACTGTGATCAGTGAGCTCAGCTCCCGTCTGCAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 72 bp CAAGACGCTGAGGATCATGGACTTCTTGTCCTCTGGTaGCTTCCGCTCTTCCCGAGGGGGCTTCTCTGCCTC +
Preference number: 3 (lower is better)
Translates to: QDAEDHGLLVLW*LPLFPRGLLCL
Trigger: GAGGCAGAGAAGCCCCCTCGGGAAGAGCGGAAGTCACCAGAGGACAAGAAGTCCATGATCCTCAGCGTCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR TCA 72 bp GGCCAGCTGGCCGTTGCAAGGACGTGTCCAAGACGCTaGGGATCATGGACTTCTTGTCCTCTGGTGACTTCC +
Preference number: 3 (lower is better)
Translates to: GQLAVARTCPRR*GSWTSCPLVTS
Trigger: GGAAGTCACCAGAGGACAAGAAGTCCATGATCCTCAGCGTCTTGGACACGTCCTTGCAACGGCCAGCTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp AGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTaGTCCAGAGCTGCAGGGGCTTCTGTTGAAATGGCC +
Preference number: 3 (lower is better)
Translates to: SGCSPASRPHRT*SRAAGASVEMA
Trigger: GGCCATTTCAACAGAAGCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR GCA 72 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATaGGCTCAGCCACACCCAGTTTTCACAAGCACACAG +
Preference number: 3 (lower is better)
Translates to: GPLHSQAHTGHP*AQPHPVFTSTQ
Trigger: CTGTGTGCTTGTGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR GCA 72 bp CTGGTGGCATGCACAACAATGAGGCCAGCTGGCCGTTaGAAGGACGTGTCCAAGACGCTGAGGATCATGGAC +
Preference number: 3 (lower is better)
Translates to: LVACTTMRPAGR*KDVSKTLRIMD
Trigger: GTCCATGATCCTCAGCGTCTTGGACACGTCCTTGCAACGGCCAGCTGGCCTCATTGTTGTGCATGCCACCAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp AGCTCAGGGTGGACATGCTGGACACTGTGGAAATGGTaGTTGTGGTCTCCAGGTGGGGGTCACTGGAGCTTC +
Preference number: 3 (lower is better)
Translates to: SSGWTCWTLWKW*LWSPGGGHWSF
Trigger: GAAGCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCCTGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp TGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTaGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGG +
Preference number: 3 (lower is better)
Translates to: CPDLACWTRFPL*KNGHQELWRKW
Trigger: CCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CCA 72 bp CCCATTGCTGGTGGCATGCACAACAATGAGGCCAGCTaGCCGTTGCAAGGACGTGTCCAAGACGCTGAGGAT +
Preference number: 3 (lower is better)
Translates to: PIAGGMHNNEAS*PLQGRVQDAED
Trigger: ATCCTCAGCGTCTTGGACACGTCCTTGCAACGGCCAGCTGGCCTCATTGTTGTGCATGCCACCAGCAATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp CTGGACACTGTGGAAATGGTGCTTGTGGTCTCCAGGTaGGGGTCACTGGAGCTTCGAGTGTCAGCCTCCTCT +
Preference number: 3 (lower is better)
Translates to: LDTVEMVLVVSR*GSLELRVSASS
Trigger: AGAGGAGGCTGACACTCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp GGGTGGACATGCTGGACACTGTGGAAATGGTGCTTGTaGTCTCCAGGTGGGGGTCACTGGAGCTTCGAGTGT +
Preference number: 3 (lower is better)
Translates to: GWTCWTLWKWCL*SPGGGHWSFEC
Trigger: ACACTCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCACAGTGTCCAGCATGTCCACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CAA 90 bp TGCCCAGGCCACCAACTGGTTCCTCCCCCAAGGAGCGTGTGTCTTTATTCAGCTTCCTCCCCTACAGATTaGGTCCGTGGAATCCCCTTC +
Preference number: 3 (lower is better)
Translates to: CPGHQLVPPPRSVCLYSASSPTD*VRGIPF
Trigger: GAAGGGGATTCCACGGACCAAATCTGTAGGGGAGGA...AGCTGAATAAAGACACACGCTCCTTGGGGGAGGAACCAGTTGGTGGCCTGGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR-3UTR CAA 90 bp TGCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTGCTCCAGAGGATCATGGACTTCTaGTCCTCTGGTGACTTCCGC +
Preference number: 3 (lower is better)
Translates to: CSPKWMLSSQSPTSNLLQRIMDF*SSGDFR
Trigger: GCGGAAGTCACCAGAGGACAAGAAGTCCATGATCCT...CTGGAGCAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp TGGAAATGGTGCTTGTGGTCTCCAGGTGGGGGTCACTaGAGCTTCGAGTGTCAGCCTCCTCTACTCCAGAGT +
Preference number: 3 (lower is better)
Translates to: WKWCLWSPGGGH*SFECQPPLLQS
Trigger: ACTCTGGAGTAGAGGAGGCTGACACTCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAGCACCATTTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp TCGAGTAGAAAAGTGTGTCCATCGGCAAAGGAGGTGTaGGTGTCCGTGAGTTCCCCACTCTCCGAGCTCAGG +
Preference number: 3 (lower is better)
Translates to: SSRKVCPSAKEV*VSVSSPLSELR
Trigger: CCTGAGCTCGGAGAGTGGGGAACTCACGGACACCCACACCTCCTTTGCCGATGGACACACTTTTCTACTCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR GCA 72 bp TCCTCCCCCAAGGAGCGTGTGTCTTTATTCAGCTGCTaGAGACGGGAGCTGAGCTCACTGATCACAGTTGGT +
Preference number: 3 (lower is better)
Translates to: SSPKERVSLFSC*RRELSSLITVG
Trigger: ACCAACTGTGATCAGTGAGCTCAGCTCCCGTCTGCAGCAGCTGAATAAAGACACACGCTCCTTGGGGGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CCA 72 bp GTTGCCCAAGAAGTGGGAAAGGTTAGACCCCTCCTGTaGGAGAGACCCTGTGAAGATGATGGCTGGGGTTTG +
Preference number: 3 (lower is better)
Translates to: VAQEVGKVRPLL*ERPCEDDGWGL
Trigger: CAAACCCCAGCCATCATCTTCACAGGGTCTCTCCCACAGGAGGGGTCTAACCTTTCCCACTTCTTGGGCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR TCA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCGGGACTATCAGGGCCTaGCGGCCGAGGCCGGCGCTT +
Preference number: 4 (lower is better)
Translates to: PRPPGPASAQQAMPATRPGTIRA*RPRPAL
Trigger: AAGCGCCGGCCTCGGCCGTCAGGCCCTGATAGTCCC...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCCCCGGGGGCTTGGCATaGGCTCTGCCACAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGPGGLA*ALPQLL
Trigger: CAGCAGCTGTGGCAGAGCCCATGCCAAGCCCCCGGG...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCGATGAAGGTGGAGCCTaGGGGCCCAAGGCTGGGACC +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGDEGGA*GPKAGT
Trigger: GGTCCCAGCCTTGGGCCCTCAGGCTCCACCTTCATC...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCCTCTGGCTCCTCCTCTaGGCTGCCTTGACCTGGCCC +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGLWLLL*AALTWP
Trigger: GGGCCAGGTCAAGGCAGCTCAGAGGAGGAGCCAGAG...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CGCACGCTTCTGACGCTCAGGGTAGGGCAGCGGGCCCAGAGGCGTGCTCGGATCCGCCCTCCCCAATGCTaGGCACCTTCACGGCCTCGC +
Preference number: 4 (lower is better)
Translates to: RTLLTLRVGQRAQRRARIRPPQC*APSRPR
Trigger: GCGAGGCCGTGAAGGTGCTCAGCATTGGGGAGGGCG...GATCCGAGCACGCCTCTGGGCCCGCTGCCCTACCCTGAGCGTCAGAAGCGTGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR GCA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCTCAGCATCGGGGCTGTaGACAGGTGTGGGGGACCGG +
Preference number: 4 (lower is better)
Translates to: PRPPGPASAQQAMPATRPSASGL*TGVGDR
Trigger: CCGGTCCCCCACACCTGTGCACAGCCCCGATGCTGA...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCATCTCGCCCTCGCCCTaGGGGCTGTGCGCCTTCACA +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGISPSP*GLCAFT
Trigger: TGTGAAGGCGCACAGCCCGCAGGGCGAGGGCGAGAT...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCAGGCCGGGGCCCGCGGTaGGTCGGAGAGGGTTCTCGT +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPGRGPR*VGEGSR
Trigger: ACGAGAACCCTCTCCGACGCACCGCGGGCCCCGGCC...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp AGGGGGCCAGGGGACCCTCAGGAGTCTTTGCCTCTCTCCAAGGGCTGTTGTGGCGGCCGGGGCCCGCGGTaGGTCGGAGAGGGTTCTCGT +
Preference number: 4 (lower is better)
Translates to: RGPGDPQESLPLSKGCCGGRGPR*VGEGSR
Trigger: ACGAGAACCCTCTCCGACGCACCGCGGGCCCCGGCC...GCCACAACAGCCCTTGGAGAGAGGCAAAGACTCCTGAGGGTCCCCTGGCCCCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCCAGCTGCCATCCAGCTaGCTGAGCGCACGCTCGATG +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGQLPSS*LSARSM
Trigger: CATCGAGCGTGCGCTCAGGCAGCTGGATGGCAGCTG...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTGTAGTAGGGCGCGGGTaGGGGTGGCGGGGCGGTCTG +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAAVVGRG*GWRGGL
Trigger: CAGACCGCCCCGCCACCCCCACCCGCGCCCTACTAC...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCCCGAGGGGAGAAGGCTaGGGAAGCCAACGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGPRGEG*GSQRSS
Trigger: AGAGGACCGTTGGCTTCCCCAGCCTTCTCCCCTCGG...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCGGCTGGGTACCGTGGTaGGCAAGGGGCCCGGCCCTG +
Preference number: 4 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPGWVPW*ARGPAL
Trigger: CAGGGCCGGGCCCCTTGCCCACCACGGTACCCAGCC...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTGGCTGGGTACCGTGGTaGGCAAGGGGCCCGGCCCTG +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAAGWVPW*ARGPAL
Trigger: CAGGGCCGGGCCCCTTGCCCACCACGGTACCCAGCC...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
3UTR CAA 72 bp ACAGTGGAACGGCGTCGCTCCTCCAGGCGCCGCTCCTaGACTGGGCCAGGGCTAGGGCCGCCGAAGGTAAGG +
Preference number: 4 (lower is better)
Translates to: TVERRRSSRRRS*TGPGLGPPKVR
Trigger: CCTTACCTTCGGCGGCCCTAGCCCTGGCCCAGTCAAGGAGCGGCGCCTGGAGGAGCGACGCCGTTCCACTGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp GCCAACGCGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGCTGCTGGGCTTCCCTaGGGCCGGGCTGGGTACCGT +
Preference number: 4 (lower is better)
Translates to: ANACDAQLHEVFLGERRQAAGLP*GRAGYR
Trigger: ACGGTACCCAGCCCGGCCTCAGGGAAGCCCAGCAGC...CTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACGCGTTGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR TCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGGCTGCTGGGCTTCCCTaGGGCCGGGCTGGGTACCGT +
Preference number: 4 (lower is better)
Translates to: GFGLPGPSPRAIISQATWAAGLP*GRAGYR
Trigger: ACGGTACCCAGCCCGGCCTCAGGGAAGCCCAGCAGC...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGTAGTAGGGCGCGGGTaGGGGTGGCGGGGCGGTCTG +
Preference number: 4 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPVVGRG*GWRGGL
Trigger: CAGACCGCCCCGCCACCCCCACCCGCGCCCTACTAC...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCACGAGCCTCCAGGCCTaGTTTGAAGCTGGAGCGCAC +
Preference number: 4 (lower is better)
Translates to: PRPPGPASAQQAMPATRPTSLQA*FEAGAH
Trigger: GTGCGCTCCAGCTTCAAACCAGGCCTGGAGGCTCGT...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACGCGCCGCTCCTTGACTaGGCCAGGGCTAGGGCCGCC +
Preference number: 4 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHAPLLD*ARARAA
Trigger: GGCGGCCCTAGCCCTGGCCCAGTCAAGGAGCGGCGC...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTCTGGGCCCGGGGGCTTaGCATGGGCTCTGCCACAGC +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAALGPGA*HGLCHS
Trigger: GCTGTGGCAGAGCCCATGCCAAGCCCCCGGGCCCAG...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCCCAGGTGGGGGTCACTaGAGCTTCGAGTGTCAGCCT +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGPGGGH*SFECQP
Trigger: AGGCTGACACTCGAAGCTCCAGTGACCCCCACCTGG...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCAAGAGCACACGCTGCTTaGCGGCCCACACGGGCGCGG +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPRAHAA*RPTRAR
Trigger: CCGCGCCCGTGTGGGCCGCCAAGCAGCGTGTGCTCT...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp TGGTGGCGCCTGTCCCCAGGAGGCGCTCATCAATGGAGCGGGAGGGTTGTAGGGAGCCCTCTTTGGGGGTaGTGGGGCTCTGCGCCGAGC +
Preference number: 4 (lower is better)
Translates to: WWRLSPGGAHQWSGRVVGSPLWG*WGSAPS
Trigger: GCTCGGCGCAGAGCCCCACCACCCCCAAAGAGGGCT...CCCTACAACCCTCCCGCTCCATTGATGAGCGCCTCCTGGGGACAGGCGCCACCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CCA 90 bp GCGCTGTGGTTTCGACGGAGCGAAGAGGCTGGCACTGAAGGCGCCCAGGTTGGCGCTGGGAGCCCTCTTTaGGGGTGGTGGGGCTCTGCG +
Preference number: 4 (lower is better)
Translates to: ALWFRRSEEAGTEGAQVGAGSPL*GWWGSA
Trigger: CGCAGAGCCCCACCACCCCCAAAGAGGGCTCCCAGC...GCCAACCTGGGCGCCTTCAGTGCCAGCCTCTTCGCTCCGTCGAAACCACAGCGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CCA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACGACGCGGGCCGGCACTaGGGCCAGAGCCGGGAGAAG +
Preference number: 4 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHDAGRH*GQSREK
Trigger: CTTCTCCCGGCTCTGGCCCCAGTGCCGGCCCGCGTC...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR TCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGGGACTATCAGGGCCTaGCGGCCGAGGCCGGCGCTT +
Preference number: 4 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPGTIRA*RPRPAL
Trigger: AAGCGCCGGCCTCGGCCGTCAGGCCCTGATAGTCCC...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCTTTCCCGAGGCATTCTaGGCACCCATGTTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: PRPPGPASAQQAMPATRPFPEAF*APMLAP
Trigger: TGGGGCCAACATGGGTGCTCAGAATGCCTCGGGAAA...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTGCGCCTTCACAGCGATaGACTTGCGGCCGGGGACGG +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAAAPSQR*TCGRGR
Trigger: CCGTCCCCGGCCGCAAGTTCATCGCTGTGAAGGCGC...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTGGGCTCTGCCACAGCTaGTGCCTGCATGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAAGLCHS*CLHGGW
Trigger: CCAGCCCCCATGCAGGCAGCAGCTGTGGCAGAGCCC...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGATCTGCTGGGATGCTaGCAGGGGGCTGGGCCCGGG +
Preference number: 4 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPDLLGC*QGAGPG
Trigger: CCCGGGCCCAGCCCCCTGGCAGCATCCCAGCAGATC...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCCAGACGCCGTCGCTTTaGATAGCTGGGGGTTTCCCT +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGQTPSL*IAGGFP
Trigger: AGGGAAACCCCCAGCTATGCAAAGCGACGGCGTCTG...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCACTTCCTTGGGTTCGTaGGGGATGGAGAGGCTGGAC +
Preference number: 4 (lower is better)
Translates to: PRPPGPASAQQAMPATRPTSLGS*GMERLD
Trigger: GTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGT...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCGGGACCACCGACCAATaGCTTCAGAGCAGAGACAGG +
Preference number: 4 (lower is better)
Translates to: PRPPGPASAQQAMPATRPGTTDQ*LQSRDR
Trigger: CCTGTCTCTGCTCTGAAGCCATTGGTCGGTGGTCCC...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGCAGCCCCCAGCCTGCTaGGCTCCTGCCCATTGCTGG +
Preference number: 4 (lower is better)
Translates to: GFGLPGPSPRAIISQATWQPPAC*APAHCW
Trigger: CCAGCAATGGGCAGGAGCCCAGCAGGCTGGGGGCTG...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGTGCCTGCATGGGGGCTaGGGCCAGCTCCGGAGTACC +
Preference number: 4 (lower is better)
Translates to: GFGLPGPSPRAIISQATWCLHGG*GQLRST
Trigger: GGTACTCCGGAGCTGGCCCCAGCCCCCATGCAGGCA...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATGCCTGCATGGGGGCTaGGGCCAGCTCCGGAGTACC +
Preference number: 4 (lower is better)
Translates to: GTHPCMHPVQASAATSHPCLHGG*GQLRST
Trigger: GGTACTCCGGAGCTGGCCCCAGCCCCCATGCAGGCA...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATGGCCCGGGATCTGCTaGGATGCTGCCAGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: GTHPCMHPVQASAATSHPWPGIC*DAARGL
Trigger: CAGCCCCCTGGCAGCATCCCAGCAGATCCCGGGCCA...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCTGGTCTCCTCATCGCTaGAGGACAGCTGAGCAGGTG +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGWSPHR*RTAEQV
Trigger: CACCTGCTCAGCTGTCCTCCAGCGATGAGGAGACCA...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp AGGGGGCCAGGGGACCCTCAGGAGTCTTTGCCTCTCTCCAAGGGCTGTTGTGGCGCCCTGGGGGCGGGGTaGTCAGCAGGATCCCATTGG +
Preference number: 4 (lower is better)
Translates to: RGPGDPQESLPLSKGCCGALGAG*SAGSHW
Trigger: CCAATGGGATCCTGCTGACCACCCCGCCCCCAGGGC...GCCACAACAGCCCTTGGAGAGAGGCAAAGACTCCTGAGGGTCCCCTGGCCCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCAGCCCTGGGGGCGGGGTaGTCAGCAGGATCCCATTGG +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPALGAG*SAGSHW
Trigger: CCAATGGGATCCTGCTGACCACCCCGCCCCCAGGGC...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GTCACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGGACGCGGGCCGGCACTaGGGCCAGAGCCGGGAGAAG +
Preference number: 4 (lower is better)
Translates to: VTKACPDLACWTRFPLWKDAGRH*GQSREK
Trigger: CTTCTCCCGGCTCTGGCCCCAGTGCCGGCCCGCGTC...CTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGTGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CAA 72 bp TCCTTGGGTTCGTGCGGGATGGAGAGGCTGGACGACTaGAGGATGGTGGGAGGCGTGAGGCCGAAGGGCCGC +
Preference number: 4 (lower is better)
Translates to: SLGSCGMERLDD*RMVGGVRPKGR
Trigger: GCGGCCCTTCGGCCTCACGCCTCCCACCATCCTCAAGTCGTCCAGCCTCTCCATCCCGCACGAACCCAAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCCTCTGGCTCCTCCTCTaGGCTGCCTTGACCTGGCCC +
Preference number: 4 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPLWLLL*AALTWP
Trigger: GGGCCAGGTCAAGGCAGCTCAGAGGAGGAGCCAGAG...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCAGCTGGGGGTTTCCCTaGATGGTACGACATCGGAGT +
Preference number: 4 (lower is better)
Translates to: PRPPGPASAQQAMPATRPSWGFP*MVRHRS
Trigger: ACTCCGATGTCGTACCATTCAGGGAAACCCCCAGCT...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCACGCCCTCCCCAATGCTaGGCACCTTCACGGCCTCGC +
Preference number: 4 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPRPPQC*APSRPR
Trigger: GCGAGGCCGTGAAGGTGCTCAGCATTGGGGAGGGCG...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCAGGTGGCCAACGCGTGTaGCGCCCAGCTCCACGAAGT +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPGGQRV*RPAPRS
Trigger: ACTTCGTGGAGCTGGGCGTCACACGCGTTGGCCACC...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR TCA 90 bp AGGTGGAGCCTGAGGGCCCAAGGCTGGGACCACCGACCAATGGCTTCAGAGCAGAGACGAACACGTAGGTaGCGGACGCGATGCCGGGGG +
Preference number: 4 (lower is better)
Translates to: RWSLRAQGWDHRPMASEQRRTRR*RTRCRG
Trigger: CCCCCGGCATCGCGTCCGTCACCTACGTGTTCGTCT...CTGCTCTGAAGCCATTGGTCGGTGGTCCCAGCCTTGGGCCCTCAGGCTCCACCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR GCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTCCGAGGGGGCTTCTCTaGCTCTCTCCGAGCAGGCAC +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAAPRGLL*LSPSRH
Trigger: GTGCCTGCTCGGAGAGAGGCAGAGAAGCCCCCTCGG...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCCCGAGGGGGCTTCTCTaGCTCTCTCCGAGCAGGCAC +
Preference number: 4 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPPRGLL*LSPSRH
Trigger: GTGCCTGCTCGGAGAGAGGCAGAGAAGCCCCCTCGG...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCGCCACAGCTGCTGCCTaGATGGGGGCTGGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPATAAA*MGAGAS
Trigger: GCTGGCCCCAGCCCCCATGCAGGCAGCAGCTGTGGC...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCATCCAGAACAGCCCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACGGGCTCTGCCACAGCTaGTGCCTGCATGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: PIQNSPWGPLHSQAHTGHGLCHS*CLHGGW
Trigger: CCAGCCCCCATGCAGGCAGCAGCTGTGGCAGAGCCC...GTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCGATCTGCTGGGATGCTaGCAGGGGGCTGGGCCCGGG +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPDLLGC*QGAGPG
Trigger: CCCGGGCCCAGCCCCCTGGCAGCATCCCAGCAGATC...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCCAGGGGGCAGCTCGCTaGTGGGCTTCCCTGAGGCCG +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPQGAAR*WASLRP
Trigger: CGGCCTCAGGGAAGCCCAGCAGCGAGCTGCCCCCTG...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GTCACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGCAGGGGGCAGCTCGCTaGTGGGCTTCCCTGAGGCCG +
Preference number: 4 (lower is better)
Translates to: VTKACPDLACWTRFPLWKQGAAR*WASLRP
Trigger: CGGCCTCAGGGAAGCCCAGCAGCGAGCTGCCCCCTG...CTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGTGAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCAGTGAGGGGGAGCGGCTaGGCGCACTCACACTTCGCA +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPVRGSG*AHSHFA
Trigger: TGCGAAGTGTGAGTGCGCGCAGCCGCTCCCCCTCAC...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAAATCGCGGCCAGTGGTaGCGCCTGTCCCCAGGAGGC +
Preference number: 4 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPNRGQW*RLSPGG
Trigger: GCCTCCTGGGGACAGGCGCCACCACTGGCCGCGATT...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCTTGCCAGTGAGAGGGTaGATGAAGGTGGAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGLPVRG*MKVEPE
Trigger: CTCAGGCTCCACCTTCATCCACCCTCTCACTGGCAA...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCACCCGGGGGCTTGGCATaGGCTCTGCCACAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPPGGLA*ALPQLL
Trigger: CAGCAGCTGTGGCAGAGCCCATGCCAAGCCCCCGGG...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCTGGAAATGGTGCTTGTaGTCTCCAGGTGGGGGTCAC +
Preference number: 4 (lower is better)
Translates to: PRPPGPASAQQAMPATRPWKWCL*SPGGGH
Trigger: GTGACCCCCACCTGGAGACCACAAGCACCATTTCCA...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACGAAGAGGCTGGCACTaGAGGCGCCCAGGTTGGCAT +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPRRGWH*RRPGWH
Trigger: ATGCCAACCTGGGCGCCTTCAGTGCCAGCCTCTTCG...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTAGGTGTGGGTGTCCGTaGGTTCCCCACTCTCCGAGC +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAARCGCP*VPHSPS
Trigger: GCTCGGAGAGTGGGGAACTCACGGACACCCACACCT...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCGCGCCTTCACAGCGATaGACTTGCGGCCGGGGACGG +
Preference number: 4 (lower is better)
Translates to: SHGPRSGLGARLSGCSPAAPSQR*TCGRGR
Trigger: CCGTCCCCGGCCGCAAGTTCATCGCTGTGAAGGCGC...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp CCCATCCAGAACAGCCCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACGGTGGCCAACGCGTGTaGCGCCCAGCTCCACGAAGT +
Preference number: 4 (lower is better)
Translates to: PIQNSPWGPLHSQAHTGHGGQRV*RPAPRS
Trigger: ACTTCGTGGAGCTGGGCGTCACACGCGTTGGCCACC...GTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp CCCATCCAGAACAGCCCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACGACCGGGAAGGTGTTTaGGAGGCCAGAGCCCGCTCC +
Preference number: 4 (lower is better)
Translates to: PIQNSPWGPLHSQAHTGHDREGV*EARARS
Trigger: GGAGCGGGCTCTGGCCTCGCAAACACCTTCCCGGTC...GTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCGCCACAGCTGCTGCCTaGATGGGGGCTGGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTATAAA*MGAGAS
Trigger: GCTGGCCCCAGCCCCCATGCAGGCAGCAGCTGTGGC...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGAATGGCCACCAGGAGCCTCTGCCACAGCTGCTaGCTGCATGGGGGCTGGGGC +
Preference number: 4 (lower is better)
Translates to: LTSHAGLGSPSGRMATRSLCHSC*LHGGWG
Trigger: GCCCCAGCCCCCATGCAGGCAGCAGCTGTGGCAGAG...GCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGGTGGCACTAGCCCTATaGGGGCCAGCTCCTCTCTGG +
Preference number: 4 (lower is better)
Translates to: GFGLPGPSPRAIISQATWVALAL*GPAPLW
Trigger: CCAGAGAGGAGCTGGCCCGCATAGGGCTAGTGCCAC...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCACACTGTGGAAATGGTaGTTGTGGTCTCCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGTLWKW*LWSPGG
Trigger: CCCACCTGGAGACCACAAGCACCATTTCCACAGTGT...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCACACTGTGGAAATGGTaGTTGTGGTCTCCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: PRPPGPASAQQAMPATRPTLWKW*LWSPGG
Trigger: CCCACCTGGAGACCACAAGCACCATTTCCACAGTGT...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp AGCGCAGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCCAGGGTCCAGCAGGCTaGCCAGGCCACCAACTGGTT +
Preference number: 4 (lower is better)
Translates to: SAGRCAPSISWSSKRSRCQGPAG*PGHQLV
Trigger: AACCAGTTGGTGGCCTGGGCAGCCTGCTGGACCCTG...GCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR GCA 90 bp AGGGGGCCAGGGGACCCTCAGGAGTCTTTGCCTCTCTCCAAGGGCTGTTGTGGCCAGGGTCCAGCAGGCTaGCCAGGCCACCAACTGGTT +
Preference number: 4 (lower is better)
Translates to: RGPGDPQESLPLSKGCCGQGPAG*PGHQLV
Trigger: AACCAGTTGGTGGCCTGGGCAGCCTGCTGGACCCTG...GCCACAACAGCCCTTGGAGAGAGGCAAAGACTCCTGAGGGTCCCCTGGCCCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGAATGGCCACCAGGAGCGTTGCAGGTCCGGGATaGCGACGCGCACGACCACGG +
Preference number: 4 (lower is better)
Translates to: LTSHAGLGSPSGRMATRSVAGPG*RRARPR
Trigger: CCGTGGTCGTGCGCGTCGGCATCCCGGACCTGCAAC...GCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCATCCAGAACAGCCCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCTTCATCCAGGAACTTaGCGGCGCGACCCCGGGAGG +
Preference number: 4 (lower is better)
Translates to: PIQNSPWGPLHSQAHTGHLHPGT*RRDPGR
Trigger: CCTCCCGGGGTCGCGCCGGCAAGTTCCTGGATGAAG...GTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCTCGCCCTGCGGGCTGTaGGCCTTCACAGCGATGAAC +
Preference number: 4 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPSPCGL*AFTAMN
Trigger: GTTCATCGCTGTGAAGGCGCACAGCCCGCAGGGCGA...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCGAGGGGAGAAGGCTGGGGAAGCCAACGGTCCTCTCTCAGAGTCTCGGGTTTGATCTCGCCCTCGCCCTaGGGGCTGTGCGCCTTCACA +
Preference number: 4 (lower is better)
Translates to: PRGEGWGSQRSSLRVSGLISPSP*GLCAFT
Trigger: TGTGAAGGCGCACAGCCCGCAGGGCGAGGGCGAGAT...CAAACCCGAGACTCTGAGAGAGGACCGTTGGCTTCCCCAGCCTTCTCCCCTCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR GCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTGAGGGGGAGCGGCTaGGCGCACTCACACTTCGCA +
Preference number: 4 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPVRGSG*AHSHFA
Trigger: TGCGAAGTGTGAGTGCGCGCAGCCGCTCCCCCTCAC...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCCAGCTGCCATCCAGCTaGCTGAGCGCACGCTCGATG +
Preference number: 4 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPQLPSS*LSARSM
Trigger: CATCGAGCGTGCGCTCAGGCAGCTGGATGGCAGCTG...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTCTGAGGGCCCAAGGCTaGGACCACCGACCAATGGCT +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAALRAQG*DHRPMA
Trigger: AGCCATTGGTCGGTGGTCCCAGCCTTGGGCCCTCAG...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACGCCCAGGCCACCAACTaGTTCCTCCCCCAAGGAGCG +
Preference number: 4 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHAQATN*FLPQGA
Trigger: CGCTCCTTGGGGGAGGAACCAGTTGGTGGCCTGGGC...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCACCACACGGGCGCGGTTaGGTCCAGACGCAGGCACTT +
Preference number: 4 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPPHGRG*VQTQAL
Trigger: AAGTGCCTGCGTCTGGACCCAACCGCGCCCGTGTGG...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCGCAATAATGGCCACCTaGAAGGCTGTCTGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGAIMAT*KAVWLL
Trigger: CAACAGCCAGACAGCCTTCCAGGTGGCCATTATTGC...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCCAGCCGTCATGGACTTaGACCGCAGGGTCAGCGTGG +
Preference number: 4 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPQPSWT*TAGSAW
Trigger: CCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTG...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATGCGCTGCGCTGAGATaGTGCTCAGCTCACCGAGGC +
Preference number: 4 (lower is better)
Translates to: GTHPCMHPVQASAATSHPCAALR*CSAHRG
Trigger: GCCTCGGTGAGCTGAGCACCATCTCAGCGCAGCGCA...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CAA 72 bp ATGGTGCTGCTGGGCCATGAGCTCACTGTCCGAGGATaGCTTCAGCAGCGGGTCCCTGAAGGTCACCGGCCC +
Preference number: 4 (lower is better)
Translates to: MVLLGHELTVRG*LQQRVPEGHRP
Trigger: GGGCCGGTGACCTTCAGGGACCCGCTGCTGAAGCAATCCTCGGACAGTGAGCTCATGGCCCAGCAGCACCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp CGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGCCTCCAGGCCTGGTTTaGAGCTGGAGCGCACAGTGT +
Preference number: 4 (lower is better)
Translates to: RVTPSSTKSSLVSAGRCAPPGLV*SWSAQC
Trigger: ACACTGTGCGCTCCAGCTTCAAACCAGGCCTGGAGG...CGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR TCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTCCTCCAGGCCTGGTTTaGAGCTGGAGCGCACAGTGT +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAAPPGLV*SWSAQC
Trigger: ACACTGTGCGCTCCAGCTTCAAACCAGGCCTGGAGG...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCACGAAGAGGCTGGCACTaGAGGCGCCCAGGTTGGCAT +
Preference number: 4 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPRRGWH*RRPGWH
Trigger: ATGCCAACCTGGGCGCCTTCAGTGCCAGCCTCTTCG...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACGCTCACCGAGGCTGCTaGAGAGCCGAGCTGCTGCAA +
Preference number: 4 (lower is better)
Translates to: PMHAPCASFCRHLPPIQNAHRGC*RAELLQ
Trigger: TTGCAGCAGCTCGGCTCTTCAGCAGCCTCGGTGAGC...GTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACCTGCATTGACGTGCTaGGTGGGAAGCGCCCTTCCA +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPPALTC*VGSALP
Trigger: TGGAAGGGCGCTTCCCACGCAGCACGTCAATGCAGG...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCAAGGCCAGCTGGCCGTTaGAAGGACGTGTCCAAGACG +
Preference number: 4 (lower is better)
Translates to: GTHPCMHPVQASAATSHPRPAGR*KDVSKT
Trigger: CGTCTTGGACACGTCCTTGCAACGGCCAGCTGGCCT...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCACGGGATCTGCTGGGATaGTGCCAGGGGGCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSRDLLG*CQGAGP
Trigger: GGGCCCAGCCCCCTGGCAGCATCCCAGCAGATCCCG...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp TCAGCGGCAGGGGAGGGCACTAAGCAATGTACAGGGCAAGTCTCCAAGCAACAGCGGGATCTGCTGGGATaGTGCCAGGGGGCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: SAAGEGTKQCTGQVSKQQRDLLG*CQGAGP
Trigger: GGGCCCAGCCCCCTGGCAGCATCCCAGCAGATCCCG...CTGTTGCTTGGAGACTTGCCCTGTACATTGCTTAGTGCCCTCCCCTGCCGCTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp AGGGGGCCAGGGGACCCTCAGGAGTCTTTGCCTCTCTCCAAGGGCTGTTGTGGCGAGGCAGCATGGTGCTaGTGGGCCATGAGCTCACTG +
Preference number: 4 (lower is better)
Translates to: RGPGDPQESLPLSKGCCGEAAWC*WAMSSL
Trigger: CAGTGAGCTCATGGCCCAGCAGCACCATGCTGCCTC...GCCACAACAGCCCTTGGAGAGAGGCAAAGACTCCTGAGGGTCCCCTGGCCCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp TCAGCGGCAGGGGAGGGCACTAAGCAATGTACAGGGCAAGTCTCCAAGCAACAGGCGCAGAGCACACGCTaGTTGGCGGCCCACACGGGC +
Preference number: 4 (lower is better)
Translates to: SAAGEGTKQCTGQVSKQQAQSTR*LAAHTG
Trigger: GCCCGTGTGGGCCGCCAAGCAGCGTGTGCTCTGCGC...CTGTTGCTTGGAGACTTGCCCTGTACATTGCTTAGTGCCCTCCCCTGCCGCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp AGGGGGCCAGGGGACCCTCAGGAGTCTTTGCCTCTCTCCAAGGGCTGTTGTGGCGGGCCCTGGAGAAGCTaGGGGCTGATCACCTTTCAG +
Preference number: 4 (lower is better)
Translates to: RGPGDPQESLPLSKGCCGGPWRS*GLITFQ
Trigger: CTGAAAGGTGATCAGCCCGCAGCTTCTCCAGGGCCC...GCCACAACAGCCCTTGGAGAGAGGCAAAGACTCCTGAGGGTCCCCTGGCCCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGCGCCCACATCGAACTTaGTCCAGAGCTGCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: GFGLPGPSPRAIISQATWRPHRT*SRAAGA
Trigger: AGCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGCG...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGGCTCGCCTAAGTGGATaGTCTCCAGCCAGTCGCCCA +
Preference number: 4 (lower is better)
Translates to: GFGLPGPSPRAIISQATWARLSG*SPASRP
Trigger: TGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGC...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCAGAGCGCAGGCAGGTGTaGGCCTTCGATCTCATGGTC +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPERRQV*AFDLMV
Trigger: GACCATGAGATCGAAGGCGCACACCTGCCTGCGCTC...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACAGCGCCGCTCCTTGACTaGGCCAGGGCTAGGGCCGCC +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTAPLLD*ARARAA
Trigger: GGCGGCCCTAGCCCTGGCCCAGTCAAGGAGCGGCGC...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGGAGGGCTGCCCTCGATaGCACCCACAGAGAGGAACA +
Preference number: 4 (lower is better)
Translates to: RVTPSSTKSSLVSAGRCAEGCPR*HPQRGT
Trigger: TGTTCCTCTCTGTGGGTGCCATCGAGGGCAGCCCTC...CGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCATGGCAGATCCGCGCTaGGAGGGCTGCCCTCGATGG +
Preference number: 4 (lower is better)
Translates to: SHGPRSGLGARLSGCSPAMADPR*EGCPRW
Trigger: CCATCGAGGGCAGCCCTCCCAGCGCGGATCTGCCAT...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCAGGAGGCGCTCATCAATaGAGCGGGAGGGTTGTAGGG +
Preference number: 4 (lower is better)
Translates to: GTHPCMHPVQASAATSHPGGAHQ*SGRVVG
Trigger: CCCTACAACCCTCCCGCTCCATTGATGAGCGCCTCC...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp ACTTCCTTGGGTTCGTGCGGGATGGAGAGGCTGGACGACTTGAGGATGGTGGGAAATCGCGGCCAGTGGTaGCGCCTGTCCCCAGGAGGC +
Preference number: 4 (lower is better)
Translates to: TSLGSCGMERLDDLRMVGNRGQW*RLSPGG
Trigger: GCCTCCTGGGGACAGGCGCCACCACTGGCCGCGATT...TCCCACCATCCTCAAGTCGTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCACTGAGGGCCCAAGGCTaGGACCACCGACCAATGGCT +
Preference number: 4 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPLRAQG*DHRPMA
Trigger: AGCCATTGGTCGGTGGTCCCAGCCTTGGGCCCTCAG...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCGAGGGGAGAAGGCTaGGGAAGCCAACGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHPRGEG*GSQRSS
Trigger: AGAGGACCGTTGGCTTCCCCAGCCTTCTCCCCTCGG...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAACCGCAGGGTCAGCGTaGTGCTGGGAGCCCTCTTTG +
Preference number: 4 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPTAGSA*CWEPSL
Trigger: CAAAGAGGGCTCCCAGCACCACGCTGACCCTGCGGT...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCAGCTTCTCTGGGCCTaGGAGGCCCTGGCGCTCAAA +
Preference number: 4 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHQLLWA*EALALK
Trigger: TTTGAGCGCCAGGGCCTCCCAGGCCCAGAGAAGCTG...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCACGGTGCTCGCCTAAGTaGATGCTCTCCAGCCAGTCG +
Preference number: 4 (lower is better)
Translates to: GTHPCMHPVQASAATSHPRCSPK*MLSSQS
Trigger: CGACTGGCTGGAGAGCATCCACTTAGGCGAGCACCG...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCAGCGCCTTCGATCTCATaGTCCTCGAAGCGGTCTCGG +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPAPSIS*SSKRSR
Trigger: CCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGC...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTGCGCCTTCGATCTCATaGTCCTCGAAGCGGTCTCGG +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAAAPSIS*SSKRSR
Trigger: CCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGC...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR TCA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCACTGTGTCCTGCATTaGCGTGCTGCGTGGGAAGCG +
Preference number: 4 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHHCVLH*RAAWEA
Trigger: CGCTTCCCACGCAGCACGTCAATGCAGGACACAGTG...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp AGCGCAGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCCAGAGTCCTGCAGTATaGTCATGGAGCGCGCACGCT +
Preference number: 4 (lower is better)
Translates to: SAGRCAPSISWSSKRSRCQSPAV*SWSAHA
Trigger: AGCGTGCGCGCTCCATGATCATACTGCAGGACTCTG...GCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR TCA 90 bp AGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCCTTCTTGTCCTCTGGTaGCTTCCGCTCTTCCCGAGG +
Preference number: 4 (lower is better)
Translates to: RQVCAFDLMVLEAVSVLALLVLW*LPLFPR
Trigger: CCTCGGGAAGAGCGGAAGTCACCAGAGGACAAGAAG...GGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCGCACACCTGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR TCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTCTTCTTGTCCTCTGGTaGCTTCCGCTCTTCCCGAGG +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAALLVLW*LPLFPR
Trigger: CCTCGGGAAGAGCGGAAGTCACCAGAGGACAAGAAG...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGTGGCATGCACAACAATaGGGCCAGCTGGCCGTTGCA +
Preference number: 4 (lower is better)
Translates to: RVTPSSTKSSLVSAGRCAWHAQQ*GQLAVA
Trigger: TGCAACGGCCAGCTGGCCTCATTGTTGTGCATGCCA...CGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR TCA 90 bp CGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCCTCTGAGCTGCCTTaGCCTGGCCCGGGATCTGCT +
Preference number: 4 (lower is better)
Translates to: RLRSHGPRSGLGARLSGCSSELP*PGPGSA
Trigger: AGCAGATCCCGGGCCAGGTCAAGGCAGCTCAGAGGA...GCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR TCA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGGTGCTGCTGGGCCATaGGCTCACTGTCCGAGGATT +
Preference number: 4 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPGAAGP*AHCPRI
Trigger: AATCCTCGGACAGTGAGCTCATGGCCCAGCAGCACC...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCGTCCCCAGCTGTGCATaGTCATGGAGAAGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPVPSCA*SWRSSS
Trigger: CGAGCTGCTTCTCCATGATCATGCACAGCTGGGGAC...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp TCAGCGGCAGGGGAGGGCACTAAGCAATGTACAGGGCAAGTCTCCAAGCAACAGCGGGCTGCGCTGCGCTaGGATGGTGCTCAGCTCACC +
Preference number: 4 (lower is better)
Translates to: SAAGEGTKQCTGQVSKQQRAALR*DGAQLT
Trigger: GGTGAGCTGAGCACCATCTCAGCGCAGCGCAGCCCG...CTGTTGCTTGGAGACTTGCCCTGTACATTGCTTAGTGCCCTCCCCTGCCGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCGACCGGGAAGGTGTTTaGGAGGCCAGAGCCCGCTCC +
Preference number: 4 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTDREGV*EARARS
Trigger: GGAGCGGGCTCTGGCCTCGCAAACACCTTCCCGGTC...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp TCAGCGGCAGGGGAGGGCACTAAGCAATGTACAGGGCAAGTCTCCAAGCAACAGCTCTGCCACAGCTGCTaGCTGCATGGGGGCTGGGGC +
Preference number: 4 (lower is better)
Translates to: SAAGEGTKQCTGQVSKQQLCHSC*LHGGWG
Trigger: GCCCCAGCCCCCATGCAGGCAGCAGCTGTGGCAGAG...CTGTTGCTTGGAGACTTGCCCTGTACATTGCTTAGTGCCCTCCCCTGCCGCTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCGCTCCTCCTCTGAGCTaGCTTGACCTGGCCCGGGAT +
Preference number: 4 (lower is better)
Translates to: SHGPRSGLGARLSGCSPAAPPLS*LDLARD
Trigger: ATCCCGGGCCAGGTCAAGGCAGCTCAGAGGAGGAGC...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR GCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTGTAGAGGCAGCATGGTaGTGCTGGGCCATGAGCTCA +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAAVEAAW*CWAMSS
Trigger: TGAGCTCATGGCCCAGCAGCACCATGCTGCCTCTAC...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCACGGCTCCGCGGCAACTaGCAGGATCTCATCCAACTT +
Preference number: 4 (lower is better)
Translates to: GTHPCMHPVQASAATSHPRLRGN*QDLIQL
Trigger: AAGTTGGATGAGATCCTGGCAGTTGCCGCGGAGCCG...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGCTCGCCTAAGTGGATaGTCTCCAGCCAGTCGCCCA +
Preference number: 4 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPARLSG*SPASRP
Trigger: TGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGC...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCATCGAAGCGGTCTCGGTaGTCGCCTAAGTGGATGCTC +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPSKRSR*SPKWML
Trigger: GAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGA...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp AAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGGGTCTGCGGCGGGGGTaGAATGCCTCGACCTTCACG +
Preference number: 4 (lower is better)
Translates to: KSSLVSAGRCAPSISWSSGLRRG*NASTFT
Trigger: CGTGAAGGTCGAGGCATTCCACCCCCGCCGCAGACC...CGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCTCACCAAGGAAGACTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp CGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGCAGAGAGGAACACAGTaGAACGGCGTCGCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: RVTPSSTKSSLVSAGRCAQRGTQ*NGVAPP
Trigger: TGGAGGAGCGACGCCGTTCCACTGTGTTCCTCTCTG...CGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGGAGGCGCTCATCAATaGAGCGGGAGGGTTGTAGGG +
Preference number: 4 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPGGAHQ*SGRVVG
Trigger: CCCTACAACCCTCCCGCTCCATTGATGAGCGCCTCC...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCACAGCCCCCAGCCTGCTaGGCTCCTGCCCATTGCTGG +
Preference number: 4 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSQPPAC*APAHCW
Trigger: CCAGCAATGGGCAGGAGCCCAGCAGGCTGGGGGCTG...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACACTGGGCCCGGGGGCTTaGCATGGGCTCTGCCACAGC +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTLGPGA*HGLCHS
Trigger: GCTGTGGCAGAGCCCATGCCAAGCCCCCGGGCCCAG...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCATGGCCCGGGATCTGCTaGGATGCTGCCAGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSWPGIC*DAARGL
Trigger: CAGCCCCCTGGCAGCATCCCAGCAGATCCCGGGCCA...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCCAGCCGTCATGGACTTaGACCGCAGGGTCAGCGTGG +
Preference number: 4 (lower is better)
Translates to: SHGPRSGLGARLSGCSPAQPSWT*TAGSAW
Trigger: CCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTG...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCGGGCCTGGGAGGCCCTaGCGCTCAAACAATGAGCTG +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPGPGRP*RSNNEL
Trigger: CAGCTCATTGTTTGAGCGCCAGGGCCTCCCAGGCCC...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
3UTR CAA 72 bp CGCGCACTCACACTTCGCACCACGAAGCGCACTTCCTaGGGTTCGTGCGGGATGGAGAGGCTGGACGACTTG +
Preference number: 4 (lower is better)
Translates to: RALTLRTTKRTS*GSCGMERLDDL
Trigger: CAAGTCGTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCGTGGTGCGAAGTGTGAGTGCGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
3UTR CAA 72 bp CCAACGCGTGTGACGCCCAGCTCCACGAAGTCTTCCTaGGTGAGCGCAGGCAGGTGTGCGCCTTCGATCTCA +
Preference number: 4 (lower is better)
Translates to: PTRVTPSSTKSS*VSAGRCAPSIS
Trigger: TGAGATCGAAGGCGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACGCGTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp GTCACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGCACTGTGTCCTGCATTaGCGTGCTGCGTGGGAAGCG +
Preference number: 4 (lower is better)
Translates to: VTKACPDLACWTRFPLWKHCVLH*RAAWEA
Trigger: CGCTTCCCACGCAGCACGTCAATGCAGGACACAGTG...CTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACTGGCATGCACAACAATaGGGCCAGCTGGCCGTTGCA +
Preference number: 4 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHWHAQQ*GQLAVA
Trigger: TGCAACGGCCAGCTGGCCTCATTGTTGTGCATGCCA...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCATCCCCAGCGGGGACTTaGGCTTGGGCTTGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSSPAGT*AWAWEA
Trigger: TGCCTCCCAAGCCCAAGCTCAAGTCCCCGCTGGGGA...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CTGGAGCTTCGAGTGTCAGCCTCCTCTACTCCAGAGTCAGCTGCAGACTCAGGGAGGCGGTTGCCACCCTaGCGGATGAGACCCACCACT +
Preference number: 4 (lower is better)
Translates to: LELRVSASSTPESAADSGRRLPP*RMRPTT
Trigger: AGTGGTGGGTCTCATCCGTCAGGGTGGCAACCGCCT...CCCTGAGTCTGCAGCTGACTCTGGAGTAGAGGAGGCTGACACTCGAAGCTCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp TCAGCGGCAGGGGAGGGCACTAAGCAATGTACAGGGCAAGTCTCCAAGCAACAGGCTCACCGAGGCTGCTaGAGAGCACAGCCGGCACTC +
Preference number: 4 (lower is better)
Translates to: SAAGEGTKQCTGQVSKQQAHRGC*RAQPAL
Trigger: GAGTGCCGGCTGTGCTCTTCAGCAGCCTCGGTGAGC...CTGTTGCTTGGAGACTTGCCCTGTACATTGCTTAGTGCCCTCCCCTGCCGCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACTCACGCACTGTGTCCTaGATTGACGTGCTGCGTGGG +
Preference number: 4 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHSRTVS*IDVLRG
Trigger: CCCACGCAGCACGTCAATGCAGGACACAGTGCGTGA...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGTCTGGCGCAGAGTCCTaGAGTATGATCATGGAGCGC +
Preference number: 4 (lower is better)
Translates to: GFGLPGPSPRAIISQATWSGAES*SMIMER
Trigger: GCGCTCCATGATCATACTGCAGGACTCTGCGCCAGA...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCGCTCCTCCTCTGAGCTaGCTTGACCTGGCCCGGGAT +
Preference number: 4 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTAPPLS*LDLARD
Trigger: ATCCCGGGCCAGGTCAAGGCAGCTCAGAGGAGGAGC...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCGTGGCACTAGCCCTATaGGGGCCAGCTCCTCTCTGG +
Preference number: 4 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTVALAL*GPAPLW
Trigger: CCAGAGAGGAGCTGGCCCGCATAGGGCTAGTGCCAC...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAACTTCCTTGGGTTCGTaGGGGATGGAGAGGCTGGAC +
Preference number: 4 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPTSLGS*GMERLD
Trigger: GTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGT...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCGCTCTTGCGGCGCTGTaGTTTCGACGGAGCGAAGAG +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPALAAL*FRRSEE
Trigger: CTCTTCGCTCCGTCGAAACCACAGCGCCGCAAGAGC...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGAATGGCCACCAGGAGCGAGGGCTGCCCTCGATaGCACCCACAGAGAGGAACA +
Preference number: 4 (lower is better)
Translates to: LTSHAGLGSPSGRMATRSEGCPR*HPQRGT
Trigger: TGTTCCTCTCTGTGGGTGCCATCGAGGGCAGCCCTC...GCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGTTGCCAGTGAGAGGGTaGATGAAGGTGGAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: RVTPSSTKSSLVSAGRCALPVRG*MKVEPE
Trigger: CTCAGGCTCCACCTTCATCCACCCTCTCACTGGCAA...CGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp CTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGAATGGCCACCAGGAGCGGCTGTGCACAGGTGTaGGGGACCGGGAAGGTGTTT +
Preference number: 4 (lower is better)
Translates to: LTSHAGLGSPSGRMATRSGCAQV*GTGKVF
Trigger: AAACACCTTCCCGGTCCCCCACACCTGTGCACAGCC...GCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GTCACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGGGCTGTGCACAGGTGTaGGGGACCGGGAAGGTGTTT +
Preference number: 4 (lower is better)
Translates to: VTKACPDLACWTRFPLWKGCAQV*GTGKVF
Trigger: AAACACCTTCCCGGTCCCCCACACCTGTGCACAGCC...CTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCGAGCAGGCACTaGAATCCACGCTGGACTCCG +
Preference number: 4 (lower is better)
Translates to: RLRSHGPRSGLGARLSGCSPSRH*NPRWTP
Trigger: CGGAGTCCAGCGTGGATTCCAGTGCCTGCTCGGAGA...GCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCTCTCCGAGCAGGCACTaGAATCCACGCTGGACTCCG +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPSPSRH*NPRWTP
Trigger: CGGAGTCCAGCGTGGATTCCAGTGCCTGCTCGGAGA...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GCCAACGCGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGAACAATGAGGCCAGCTaGCCGTTGCAAGGACGTGTC +
Preference number: 4 (lower is better)
Translates to: ANACDAQLHEVFLGERRQNNEAS*PLQGRV
Trigger: GACACGTCCTTGCAACGGCCAGCTGGCCTCATTGTT...CTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACGCGTTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCACTTGTGGTCTCCAGGTaGGGGTCACTGGAGCTTCGA +
Preference number: 4 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPLVVSR*GSLELR
Trigger: TCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAG...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCATCCAGAACAGCCCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACTCTCCGAGCTCAGGGTaGACATGCTGGACACTGTGG +
Preference number: 4 (lower is better)
Translates to: PIQNSPWGPLHSQAHTGHSPSSG*TCWTLW
Trigger: CCACAGTGTCCAGCATGTCCACCCTGAGCTCGGAGA...GTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCGCAGCATGGTGCTGCTaGGCCATGAGCTCACTGTCC +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPAAWCC*AMSSLS
Trigger: GGACAGTGAGCTCATGGCCCAGCAGCACCATGCTGC...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp ACCACGAAGCGCACTTCCTTGGGTTCGTGCGGGATGGAGAGGCTGGACGACTTGCCAGTAGAGGCAGCATaGTGCTGCTGGGCCATGAGC +
Preference number: 4 (lower is better)
Translates to: TTKRTSLGSCGMERLDDLPVEAA*CCWAMS
Trigger: GCTCATGGCCCAGCAGCACCATGCTGCCTCTACTGG...CAAGTCGTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCGTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp CCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACTTCCACACAGTCAGCTaGGAACCAGCCTGTTCGGCC +
Preference number: 4 (lower is better)
Translates to: PMHAPCASFCRHLPPIQNFHTVS*EPACSA
Trigger: GGCCGAACAGGCTGGTTCCCAGCTGACTGTGTGGAA...GTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCGAGGGGAGAAGGCTGGGGAAGCCAACGGTCCTCTCTCAGAGTCTCGGGTTTGTTCCACACAGTCAGCTaGGAACCAGCCTGTTCGGCC +
Preference number: 4 (lower is better)
Translates to: PRGEGWGSQRSSLRVSGLFHTVS*EPACSA
Trigger: GGCCGAACAGGCTGGTTCCCAGCTGACTGTGTGGAA...CAAACCCGAGACTCTGAGAGAGGACCGTTGGCTTCCCCAGCCTTCTCCCCTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACAGCTGGGAGCCCTCTTTaGGGGTGGTGGGGCTCTGCG +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTAGSPL*GWWGSA
Trigger: CGCAGAGCCCCACCACCCCCAAAGAGGGCTCCCAGC...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCCGGTGCTCGCCTAAGTaGATGCTCTCCAGCCAGTCG +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPRCSPK*MLSSQS
Trigger: CGACTGGCTGGAGAGCATCCACTTAGGCGAGCACCG...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CAA 72 bp TGGGGAAGCCAACGGTCCTCTCTCAGAGTCTCGGGTTaGCACATCCACAAAGAGGGGTCCAGGGCGGTCAGC +
Preference number: 4 (lower is better)
Translates to: WGSQRSSLRVSG*HIHKEGSRAVS
Trigger: GCTGACCGCCCTGGACCCCTCTTTGTGGATGTGCAAACCCGAGACTCTGAGAGAGGACCGTTGGCTTCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp TCAGCGGCAGGGGAGGGCACTAAGCAATGTACAGGGCAAGTCTCCAAGCAACAGTCCTCTGAGCTGCCTTaGCCTGGCCCGGGATCTGCT +
Preference number: 4 (lower is better)
Translates to: SAAGEGTKQCTGQVSKQQSSELP*PGPGSA
Trigger: AGCAGATCCCGGGCCAGGTCAAGGCAGCTCAGAGGA...CTGTTGCTTGGAGACTTGCCCTGTACATTGCTTAGTGCCCTCCCCTGCCGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCCAGACACAACCTTCATaGCCAGGCGGTTGCCACCCT +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPQTQPS*PGGCHP
Trigger: AGGGTGGCAACCGCCTGGTCATGAAGGTTGTGTCTG...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCACGCACTGTGTCCTaGATTGACGTGCTGCGTGGG +
Preference number: 4 (lower is better)
Translates to: RLRSHGPRSGLGARLSGCSRTVS*IDVLRG
Trigger: CCCACGCAGCACGTCAATGCAGGACACAGTGCGTGA...GCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR GCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACATCAGCATCGGGGCTGTaGACAGGTGTGGGGGACCGG +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTSASGL*TGVGDR
Trigger: CCGGTCCCCCACACCTGTGCACAGCCCCGATGCTGA...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACCATTGCTGGTGGCATaGACAACAATGAGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPPLLVA*TTMRPA
Trigger: AGCTGGCCTCATTGTTGTGCATGCCACCAGCAATGG...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCATCCAGAACAGCCCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACTGGGCTCCTGCCCATTaGTGGTGGCATGCACAACAA +
Preference number: 4 (lower is better)
Translates to: PIQNSPWGPLHSQAHTGHWAPAH*WWHAQQ
Trigger: TTGTTGTGCATGCCACCAGCAATGGGCAGGAGCCCA...GTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCAAGCTCAGGGTGGACATaGTGGACACTGTGGAAATGG +
Preference number: 4 (lower is better)
Translates to: GTHPCMHPVQASAATSHPSSGWT*WTLWKW
Trigger: CCATTTCCACAGTGTCCAGCATGTCCACCCTGAGCT...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCGAGGCAGCATGGTGCTaGTGGGCCATGAGCTCACTG +
Preference number: 4 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTEAAWC*WAMSSL
Trigger: CAGTGAGCTCATGGCCCAGCAGCACCATGCTGCCTC...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp TCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCGTAGAGGCAGCATGGTaGTGCTGGGCCATGAGCTCA +
Preference number: 4 (lower is better)
Translates to: SHGPRSGLGARLSGCSPAVEAAW*CWAMSS
Trigger: TGAGCTCATGGCCCAGCAGCACCATGCTGCCTCTAC...GGCTGGAGAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR GCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCGCCCACATCGAACTTaGTCCAGAGCTGCAGGGGCT +
Preference number: 4 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTRPHRT*SRAAGA
Trigger: AGCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGCG...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp GTCACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGTCGAAGCGGTCTCGGTaGTCGCCTAAGTGGATGCTC +
Preference number: 4 (lower is better)
Translates to: VTKACPDLACWTRFPLWKSKRSR*SPKWML
Trigger: GAGCATCCACTTAGGCGAGCACCGAGACCGCTTCGA...CTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGTGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCGAGCGCAGGCAGGTGTaGGCCTTCGATCTCATGGTC +
Preference number: 4 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTERRQV*AFDLMV
Trigger: GACCATGAGATCGAAGGCGCACACCTGCCTGCGCTC...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCCAGAGAGGAACACAGTaGAACGGCGTCGCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPQRGTQ*NGVAPP
Trigger: TGGAGGAGCGACGCCGTTCCACTGTGTTCCTCTCTG...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACAATGGCAGATCCGCGCTaGGAGGGCTGCCCTCGATGG +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTMADPR*EGCPRW
Trigger: CCATCGAGGGCAGCCCTCCCAGCGCGGATCTGCCAT...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCTGGTCTCCTCATCGCTaGAGGACAGCTGAGCAGGTG +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPWSPHR*RTAEQV
Trigger: CACCTGCTCAGCTGTCCTCCAGCGATGAGGAGACCA...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CGCCTTCGATCTCATGGTCCTCGAAGCGGTCTCGGTGCTCGCCTAAGTGGATGCCTTGTGGTCTCCAGGTaGGGGTCACTGGAGCTTCGA +
Preference number: 4 (lower is better)
Translates to: RLRSHGPRSGLGARLSGCLVVSR*GSLELR
Trigger: TCGAAGCTCCAGTGACCCCCACCTGGAGACCACAAG...GCATCCACTTAGGCGAGCACCGAGACCGCTTCGAGGACCATGAGATCGAAGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp AAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGCCTTCGATCTCATGGTCCTCGGCAGCATGGTGCTGCTaGGCCATGAGCTCACTGTCC +
Preference number: 4 (lower is better)
Translates to: KSSLVSAGRCAPSISWSSAAWCC*AMSSLS
Trigger: GGACAGTGAGCTCATGGCCCAGCAGCACCATGCTGC...CGAGGACCATGAGATCGAAGGCGCACACCTGCCTGCGCTCACCAAGGAAGACTT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGGCCCAGGCCACCAACTaGTTCCTCCCCCAAGGAGCG +
Preference number: 4 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVAQATN*FLPQGA
Trigger: CGCTCCTTGGGGGAGGAACCAGTTGGTGGCCTGGGC...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GTGCTGCGTGGGAAGCGCCCTTCCAGTAGGGATGCCAGCTTCTCATCCTCCCCTTCGTCCGGTCCTCTCTaGTTTCATGCCGGGTGTCAT +
Preference number: 4 (lower is better)
Translates to: VLRGKRPSSRDASFSSSPSSGPL*FHAGCH
Trigger: ATGACACCCGGCATGAAACCAGAGAGGACCGGACGA...AGGGGAGGATGAGAAGCTGGCATCCCTACTGGAAGGGCGCTTCCCACGCAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGAGCCCTCTTTGGGGGTaGTGGGGCTCTGCGCCGAGC +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGSPLWG*WGSAPS
Trigger: GCTCGGCGCAGAGCCCCACCACCCCCAAAGAGGGCT...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GCCAACGGTCCTCTCTCAGAGTCTCGGGTTTGCACATCCACAAAGAGGGGTCCAACCGCAGGGTCAGCGTaGTGCTGGGAGCCCTCTTTG +
Preference number: 4 (lower is better)
Translates to: ANGPLSESRVCTSTKRGPTAGSA*CWEPSL
Trigger: CAAAGAGGGCTCCCAGCACCACGCTGACCCTGCGGT...TGGACCCCTCTTTGTGGATGTGCAAACCCGAGACTCTGAGAGAGGACCGTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CCA 90 bp CCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACCCTCCCCTACAGATTTaGTCCGTGGAATCCCCTTCC +
Preference number: 4 (lower is better)
Translates to: PMHAPCASFCRHLPPIQNPPLQI*SVESPS
Trigger: GGAAGGGGATTCCACGGACCAAATCTGTAGGGGAGG...GTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
3UTR CAA 72 bp TGCAGACGGGAGCTGAGCTCACTGATCACAGTTGGTTaGTCATCTTCAGGCCCAGGGAGCCCCCGACTCTCC +
Preference number: 4 (lower is better)
Translates to: CRRELSSLITVG*SSSGPGSPRLS
Trigger: GGAGAGTCGGGGGCTCCCTGGGCCTGAAGATGACAAACCAACTGTGATCAGTGAGCTCAGCTCCCGTCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGATGAAGGTGGAGCCTaGGGGCCCAAGGCTGGGACC +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGDEGGA*GPKAGT
Trigger: GGTCCCAGCCTTGGGCCCTCAGGCTCCACCTTCATC...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGTCCCCAGCGGGGACTTaGGCTTGGGCTTGGGAGGCA +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGSPAGT*AWAWEA
Trigger: TGCCTCCCAAGCCCAAGCTCAAGTCCCCGCTGGGGA...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp AAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGGCCACCCCTGCCTGCTaGGGGGCCGCTGATGTCATT +
Preference number: 4 (lower is better)
Translates to: KGFTKNPCLSWVRFGEEGATPAC*GAADVI
Trigger: AATGACATCAGCGGCCCCTCAGCAGGCAGGGGTGGC...CCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACAAGGCGGTTGCCACCCTaGCGGATGAGACCCACCACT +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTRRLPP*RMRPTT
Trigger: AGTGGTGGGTCTCATCCGTCAGGGTGGCAACCGCCT...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp TGCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTGCTCCAGCAGACACAACCTTCATaGCCAGGCGGTTGCCACCCT +
Preference number: 4 (lower is better)
Translates to: CSPKWMLSSQSPTSNLLQQTQPS*PGGCHP
Trigger: AGGGTGGCAACCGCCTGGTCATGAAGGTTGTGTCTG...CTGGAGCAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCATGCCATCCAGCTGCCTaGGCGCACGCTCGATGTTCA +
Preference number: 4 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSCHPAA*AHARCS
Trigger: TGAACATCGAGCGTGCGCTCAGGCAGCTGGATGGCA...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp TCAGCGGCAGGGGAGGGCACTAAGCAATGTACAGGGCAAGTCTCCAAGCAACAGCCTGCATTGACGTGCTaGGTGGGAAGCGCCCTTCCA +
Preference number: 4 (lower is better)
Translates to: SAAGEGTKQCTGQVSKQQPALTC*VGSALP
Trigger: TGGAAGGGCGCTTCCCACGCAGCACGTCAATGCAGG...CTGTTGCTTGGAGACTTGCCCTGTACATTGCTTAGTGCCCTCCCCTGCCGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGAATGGCCACCAGGAGCTGGGCTCCTGCCCATTaGTGGTGGCATGCACAACAA +
Preference number: 4 (lower is better)
Translates to: LTSHAGLGSPSGRMATRSWAPAH*WWHAQQ
Trigger: TTGTTGTGCATGCCACCAGCAATGGGCAGGAGCCCA...GCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCATACTCCAGAGTCAGCTaGAGACTCAGGGGCAGGGGG +
Preference number: 4 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSYSRVS*RLRGRG
Trigger: CCCCCTGCCCCTGAGTCTGCAGCTGACTCTGGAGTA...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp TCTCGGTGCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTGTCACTGTCCGAGGATTaGTTCAGCAGCGGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: SRCSPKWMLSSQSPTSNLSLSED*FSSGSL
Trigger: CAGGGACCCGCTGCTGAAGCAATCCTCGGACAGTGA...CAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGCACCGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR GCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGTCTTTATTCAGCTGCTaGAGACGGGAGCTGAGCTCA +
Preference number: 4 (lower is better)
Translates to: GFGLPGPSPRAIISQATWSLFSC*RRELSS
Trigger: TGAGCTCAGCTCCCGTCTGCAGCAGCTGAATAAAGA...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCATCTGGCTGTTGTAATTaGGGACGTCCTTGTTGGCAC +
Preference number: 4 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPSGCCN*GRPCWH
Trigger: GTGCCAACAAGGACGTCCGCAATTACAACAGCCAGA...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GTCACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGCTCAAGGTATTGGAGTaGAGGGAAGGCAGGTGTGGG +
Preference number: 4 (lower is better)
Translates to: VTKACPDLACWTRFPLWKLKVLE*REGRCG
Trigger: CCCACACCTGCCTTCCCTGCACTCCAATACCTTGAG...CTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGTGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGGTCTGCGGCGGGGGTaGAATGCCTCGACCTTCACG +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGGLRRG*NASTFT
Trigger: CGTGAAGGTCGAGGCATTCCACCCCCGCCGCAGACC...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCAACAATGAGGCCAGCTaGCCGTTGCAAGGACGTGTC +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPNNEAS*PLQGRV
Trigger: GACACGTCCTTGCAACGGCCAGCTGGCCTCATTGTT...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCATCAGCAGGATCCCATTaGCAAACTCTTCAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPSAGSH*QTLQGV
Trigger: CACCCCCTGAAGAGTTTGCCAATGGGATCCTGCTGA...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGTGGACACTGTGGAAATaGTGCTTGTGGTCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: RVTPSSTKSSLVSAGRCAWTLWK*CLWSPG
Trigger: ACCTGGAGACCACAAGCACCATTTCCACAGTGTCCA...CGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CCA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGTGGACACTGTGGAAATaGTGCTTGTGGTCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: GFGLPGPSPRAIISQATWWTLWK*CLWSPG
Trigger: ACCTGGAGACCACAAGCACCATTTCCACAGTGTCCA...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGTGCGCTGCGCTGAGATaGTGCTCAGCTCACCGAGGC +
Preference number: 4 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVCAALR*CSAHRG
Trigger: GCCTCGGTGAGCTGAGCACCATCTCAGCGCAGCGCA...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CCA 90 bp AAGCGCCCTTCCAGTAGGGATGCCAGCTTCTCATCCTCCCCTACAGATTTGGTCATCCGCCGGGCCCACTaGGGCTGTAGACGAACACGT +
Preference number: 4 (lower is better)
Translates to: KRPSSRDASFSSSPTDLVIRRAH*GCRRTR
Trigger: ACGTGTTCGTCTACAGCCCCAGTGGGCCCGGCGGAT...GACCAAATCTGTAGGGGAGGATGAGAAGCTGGCATCCCTACTGGAAGGGCGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp CCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACACGTGTCCAAGACGCTaGGGATCATGGACTTCTTGT +
Preference number: 4 (lower is better)
Translates to: PMHAPCASFCRHLPPIQNTCPRR*GSWTSC
Trigger: ACAAGAAGTCCATGATCCTCAGCGTCTTGGACACGT...GTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp AAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGAGGTGTGGGTGTCCGTaGGTTCCCCACTCTCCGAGC +
Preference number: 4 (lower is better)
Translates to: KGFTKNPCLSWVRFGEEGRCGCP*VPHSPS
Trigger: GCTCGGAGAGTGGGGAACTCACGGACACCCACACCT...CCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTTGAAGGCTATGATTaGGGGCGCAGAGCACACGCT +
Preference number: 4 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTLEGYD*GRRAHA
Trigger: AGCGTGTGCTCTGCGCCCTCAATCATAGCCTTCAAG...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCGCTGGACATAGTCCATaGACTTCTTCAGGTTTGCCT +
Preference number: 4 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPAGHSP*TSSGLP
Trigger: AGGCAAACCTGAAGAAGTTCATGGACTATGTCCAGC...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACAATCGCTGTGTGAAGTaGGGCTGTCATAGGAACCCA +
Preference number: 4 (lower is better)
Translates to: PMHAPCASFCRHLPPIQNNRCVK*GCHRNP
Trigger: TGGGTTCCTATGACAGCCTCACTTCACACAGCGATT...GTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp AGCCTGAGGGCCCAAGGCTGGGACCACCGACCAATGGCTTCAGAGCAGAGACAGAATCGCTGTGTGAAGTaGGGCTGTCATAGGAACCCA +
Preference number: 4 (lower is better)
Translates to: SLRAQGWDHRPMASEQRQNRCVK*GCHRNP
Trigger: TGGGTTCCTATGACAGCCTCACTTCACACAGCGATT...CTGTCTCTGCTCTGAAGCCATTGGTCGGTGGTCCCAGCCTTGGGCCCTCAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACATGCCATCCAGCTGCCTaGGCGCACGCTCGATGTTCA +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTCHPAA*AHARCS
Trigger: TGAACATCGAGCGTGCGCTCAGGCAGCTGGATGGCA...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR GCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACAAGGCCAGCTGGCCGTTaGAAGGACGTGTCCAAGACG +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTRPAGR*KDVSKT
Trigger: CGTCTTGGACACGTCCTTGCAACGGCCAGCTGGCCT...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCATCACTGTCCGAGGATTaGTTCAGCAGCGGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSSLSED*FSSGSL
Trigger: CAGGGACCCGCTGCTGAAGCAATCCTCGGACAGTGA...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GTCACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGAAAAGGTGCTCCAGGTaGTGCACGTGTCCAAAGCGA +
Preference number: 4 (lower is better)
Translates to: VTKACPDLACWTRFPLWKKRCSR*CTCPKR
Trigger: TCGCTTTGGACACGTGCAGCACCTGGAGCACCTTTT...CTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACACCAGGTGGGGGTCACTaGAGCTTCGAGTGTCAGCCT +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTPGGGH*SFECQP
Trigger: AGGCTGACACTCGAAGCTCCAGTGACCCCCACCTGG...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCACATGCTGGACACTGTaGAAATGGTGCTTGTGGTCT +
Preference number: 4 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPTCWTL*KWCLWS
Trigger: AGACCACAAGCACCATTTCCACAGTGTCCAGCATGT...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTAACCATTCTCATCAGTaGTCCCCAGCTGTGCATGAT +
Preference number: 4 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAANHSHQ*SPAVHD
Trigger: ATCATGCACAGCTGGGGACCACTGATGAGAATGGTT...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GTCACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGCCTCCTCGGGTTTCCTaGTCACAGACACAACCTTCA +
Preference number: 4 (lower is better)
Translates to: VTKACPDLACWTRFPLWKPPRVS*SQTQPS
Trigger: TGAAGGTTGTGTCTGTGACCAGGAAACCCGAGGAGG...CTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp TGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACTACAGATTTGGTCCGTaGAATCCCCTTCCGCAGAGA +
Preference number: 4 (lower is better)
Translates to: WGPLHSQAHTGHPCAQPHYRFGP*NPLPQR
Trigger: TCTCTGCGGAAGGGGATTCCACGGACCAAATCTGTA...GTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACATCGATGTTCATGCGGTaGCCAACGCGTGTGACGCCC +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTSMFMR*PTRVTP
Trigger: GGGCGTCACACGCGTTGGCCACCGCATGAACATCGA...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CAA 72 bp ACATTATGTGGCGCACACACACACACAGGGCAGGAATaGGGGAGTCTTTGGGGTGCGAGGCAGGGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: TLCGAHTHTGQE*GSLWGARQGGF
Trigger: GAAGCCTCCCTGCCTCGCACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CAA 72 bp AAGGACGTGTCCAAGACGCTGAGGATCATGGACTTCTaGTCCTCTGGTGACTTCCGCTCTTCCCGAGGGGGC +
Preference number: 4 (lower is better)
Translates to: KDVSKTLRIMDF*SSGDFRSSRGG
Trigger: GCCCCCTCGGGAAGAGCGGAAGTCACCAGAGGACAAGAAGTCCATGATCCTCAGCGTCTTGGACACGTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CAA 72 bp GCTGGTGGCATGCACAACAATGAGGCCAGCTGGCCGTaGCAAGGACGTGTCCAAGACGCTGAGGATCATGGA +
Preference number: 4 (lower is better)
Translates to: AGGMHNNEASWP*QGRVQDAEDHG
Trigger: TCCATGATCCTCAGCGTCTTGGACACGTCCTTGCAACGGCCAGCTGGCCTCATTGTTGTGCATGCCACCAGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR GCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCCATTGCTGGTGGCATaGACAACAATGAGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTPLLVA*TTMRPA
Trigger: AGCTGGCCTCATTGTTGTGCATGCCACCAGCAATGG...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGTACTCCAGAGTCAGCTaGAGACTCAGGGGCAGGGGG +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGYSRVS*RLRGRG
Trigger: CCCCCTGCCCCTGAGTCTGCAGCTGACTCTGGAGTA...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp ATTCAGCTGCTGCAGACGGGAGCTGAGCTCACTGATCACAGTTGGTTTGTCATCTCGCCCTGCGGGCTGTaGGCCTTCACAGCGATGAAC +
Preference number: 4 (lower is better)
Translates to: IQLLQTGAELTDHSWFVISPCGL*AFTAMN
Trigger: GTTCATCGCTGTGAAGGCGCACAGCCCGCAGGGCGA...GATGACAAACCAACTGTGATCAGTGAGCTCAGCTCCCGTCTGCAGCAGCTGAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR GCA 90 bp GCCAACGGTCCTCTCTCAGAGTCTCGGGTTTGCACATCCACAAAGAGGGGTCCACTCAAGGTATTGGAGTaGAGGGAAGGCAGGTGTGGG +
Preference number: 4 (lower is better)
Translates to: ANGPLSESRVCTSTKRGPLKVLE*REGRCG
Trigger: CCCACACCTGCCTTCCCTGCACTCCAATACCTTGAG...TGGACCCCTCTTTGTGGATGTGCAAACCCGAGACTCTGAGAGAGGACCGTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGCTCTTGCGGCGCTGTaGTTTCGACGGAGCGAAGAG +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGALAAL*FRRSEE
Trigger: CTCTTCGCTCCGTCGAAACCACAGCGCCGCAAGAGC...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAACATGCTGGACACTGTaGAAATGGTGCTTGTGGTCT +
Preference number: 4 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPTCWTL*KWCLWS
Trigger: AGACCACAAGCACCATTTCCACAGTGTCCAGCATGT...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGTCTCCGAGCTCAGGGTaGACATGCTGGACACTGTGG +
Preference number: 4 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVSPSSG*TCWTLW
Trigger: CCACAGTGTCCAGCATGTCCACCCTGAGCTCGGAGA...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGCCAGTAGAGGCAGCATaGTGCTGCTGGGCCATGAGC +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGPVEAA*CCWAMS
Trigger: GCTCATGGCCCAGCAGCACCATGCTGCCTCTACTGG...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACCTCACTGATCACAGTTaGTTTGTCATCTTCAGGCCC +
Preference number: 4 (lower is better)
Translates to: PMHAPCASFCRHLPPIQNLTDHS*FVIFRP
Trigger: GGGCCTGAAGATGACAAACCAACTGTGATCAGTGAG...GTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGGGCTGATCTTGTTGTaGCCACCCCTGCCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGGLILL*PPLPAE
Trigger: CTCAGCAGGCAGGGGTGGCCACAACAAGATCAGCCC...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGCGAAGCGCACTTCCTTaGGTTCGTGCGGGATGGAGA +
Preference number: 4 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVRSALP*VRAGWR
Trigger: TCTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCG...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR TCA 90 bp TCAGCGGCAGGGGAGGGCACTAAGCAATGTACAGGGCAAGTCTCCAAGCAACAGGGAGAAGCTGCGGGCTaGTCACCTTTCAGGTTGATA +
Preference number: 4 (lower is better)
Translates to: SAAGEGTKQCTGQVSKQQGEAAG*SPFRLI
Trigger: TATCAACCTGAAAGGTGATCAGCCCGCAGCTTCTCC...CTGTTGCTTGGAGACTTGCCCTGTACATTGCTTAGTGCCCTCCCCTGCCGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGGGACCACCGACCAATaGCTTCAGAGCAGAGACAGG +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGGTTDQ*LQSRDR
Trigger: CCTGTCTCTGCTCTGAAGCCATTGGTCGGTGGTCCC...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGAATGGCCACCAGGAGCCTCACTGATCACAGTTaGTTTGTCATCTTCAGGCCC +
Preference number: 4 (lower is better)
Translates to: LTSHAGLGSPSGRMATRSLTDHS*FVIFRP
Trigger: GGGCCTGAAGATGACAAACCAACTGTGATCAGTGAG...GCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGAATGGCCACCAGGAGCTCTGAGCACCCATGTTaGCCCCATAGAACAAAAGGT +
Preference number: 4 (lower is better)
Translates to: LTSHAGLGSPSGRMATRSSEHPC*PHRTKG
Trigger: ACCTTTTGTTCTATGGGGCCAACATGGGTGCTCAGA...GCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACATCGTCCGGTCCTCTCTaGTTTCATGCCGGGTGTCAT +
Preference number: 4 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTSSGPL*FHAGCH
Trigger: ATGACACCCGGCATGAAACCAGAGAGGACCGGACGA...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCACAGACTCAAGGTATTaGAGTGCAGGGAAGGCAGGT +
Preference number: 4 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTTDSRY*SAGKAG
Trigger: ACCTGCCTTCCCTGCACTCCAATACCTTGAGTCTGT...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GCCAACGGTCCTCTCTCAGAGTCTCGGGTTTGCACATCCACAAAGAGGGGTCCACCTCCTCGGGTTTCCTaGTCACAGACACAACCTTCA +
Preference number: 4 (lower is better)
Translates to: ANGPLSESRVCTSTKRGPPPRVS*SQTQPS
Trigger: TGAAGGTTGTGTCTGTGACCAGGAAACCCGAGGAGG...TGGACCCCTCTTTGTGGATGTGCAAACCCGAGACTCTGAGAGAGGACCGTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CCA 90 bp CCCATCCAGAACAGCCCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCTTTTCTTCTCCGAATaGAAGCAAGTTCCTCGAGCT +
Preference number: 4 (lower is better)
Translates to: PIQNSPWGPLHSQAHTGHLFFSE*KQVPRA
Trigger: AGCTCGAGGAACTTGCTTCCATTCGGAGAAGAAAAG...GTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp AAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGCGAAGCGCACTTCCTTaGGTTCGTGCGGGATGGAGA +
Preference number: 4 (lower is better)
Translates to: KGFTKNPCLSWVRFGEEGRSALP*VRAGWR
Trigger: TCTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCG...CCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
3UTR CAA 72 bp AGAGCAAGAGCTAAGGGTGAGCTAGGATCCAAGGGTTaGCCAGTGAGAGGGTGGATGAAGGTGGAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: RARAKGELGSKG*PVRGWMKVEPE
Trigger: CTCAGGCTCCACCTTCATCCACCCTCTCACTGGCAAACCCTTGGATCCTAGCTCACCCTTAGCTCTTGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR TCA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCACTGCTTGTCATCTATaGGGTTCTGGGCATAAACTC +
Preference number: 4 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPTACHL*GSGHKL
Trigger: GAGTTTATGCCCAGAACCTCATAGATGACAAGCAGT...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGCAGAGGGCACTCTCCTaGGTCAGGGTCATGGAAATT +
Preference number: 4 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVQRALS*VRVMEI
Trigger: AATTTCCATGACCCTGACTCAGGAGAGTGCCCTCTG...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGAGCTCAGGGTGGACATaGTGGACACTGTGGAAATGG +
Preference number: 4 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVSSGWT*WTLWKW
Trigger: CCATTTCCACAGTGTCCAGCATGTCCACCCTGAGCT...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGTCAGCAGGATCCCATTaGCAAACTCTTCAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVSAGSH*QTLQGV
Trigger: CACCCCCTGAAGAGTTTGCCAATGGGATCCTGCTGA...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGTGGAAATGGTGCTTGTaGTCTCCAGGTGGGGGTCAC +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGWKWCL*SPGGGH
Trigger: GTGACCCCCACCTGGAGACCACAAGCACCATTTCCA...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CCA 90 bp GCCAACGGTCCTCTCTCAGAGTCTCGGGTTTGCACATCCACAAAGAGGGGTCCAACAGACTCAAGGTATTaGAGTGCAGGGAAGGCAGGT +
Preference number: 4 (lower is better)
Translates to: ANGPLSESRVCTSTKRGPTDSRY*SAGKAG
Trigger: ACCTGCCTTCCCTGCACTCCAATACCTTGAGTCTGT...TGGACCCCTCTTTGTGGATGTGCAAACCCGAGACTCTGAGAGAGGACCGTTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
3UTR CAA 72 bp GGACCCTCAGGAGTCTTTGCCTCTCTCCAAGGGCTGTaGTGGCCTGATTTTAGTGGTCCCCACAATTCCCTT +
Preference number: 4 (lower is better)
Translates to: GPSGVFASLQGL*WPDFSGPHNSL
Trigger: AAGGGAATTGTGGGGACCACTAAAATCAGGCCACAACAGCCCTTGGAGAGAGGCAAAGACTCCTGAGGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR TCA 90 bp TCAGCGGCAGGGGAGGGCACTAAGCAATGTACAGGGCAAGTCTCCAAGCAACAGAGTCTTTGTGGGTCTTaGTTACCTCGGCAAGCTCAA +
Preference number: 4 (lower is better)
Translates to: SAAGEGTKQCTGQVSKQQSLCGS*LPRQAQ
Trigger: TTGAGCTTGCCGAGGTAATCAAGACCCACAAAGACT...CTGTTGCTTGGAGACTTGCCCTGTACATTGCTTAGTGCCCTCCCCTGCCGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGACGTGTCCAAGACGCTaGGGATCATGGACTTCTTGT +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGTCPRR*GSWTSC
Trigger: ACAAGAAGTCCATGATCCTCAGCGTCTTGGACACGT...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR TCA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGATCACCTTTCAGGTTaGTATCACTGGCTGAGCGCT +
Preference number: 4 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGDHLSG*YHWLSA
Trigger: AGCGCTCAGCCAGTGATATCAACCTGAAAGGTGATC...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp AAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGTCTTTATTCAGCTGCTaGAGACGGGAGCTGAGCTCA +
Preference number: 4 (lower is better)
Translates to: KGFTKNPCLSWVRFGEEGSLFSC*RRELSS
Trigger: TGAGCTCAGCTCCCGTCTGCAGCAGCTGAATAAAGA...CCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR GCA 90 bp CTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGAATGGCCACCAGGAGCTGTAGCTTTGCAAACTaGTTGTCATCTATGAGGTTC +
Preference number: 4 (lower is better)
Translates to: LTSHAGLGSPSGRMATRSCSFAN*LSSMRF
Trigger: GAACCTCATAGATGACAAGCAGTTTGCAAAGCTACA...GCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 90 bp GAGCCCTCTTTGGGGGTGGTGGGGCTGCAAAGAAGAGGGAGGCCTTaGCCCTCCGGTCCAGCAGCAGGCGGCGCGGAGTGGCCAGGTGCA +
Preference number: 5 (lower is better)
Translates to: EPSLGVVGLQRRGRP*PSGPAAGGAEWPGA
Trigger: TGCACCTGGCCACTCCGCGCCGCCTGCTGCTGGACCGGAGGGCCAAGGCCTCCCTCTTCTTTGCAGCCCCACCACCCCCAAAGAGGGCTC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CCA 90 bp GAGGGCGCAGAGCACACGCTGCTTGGCGGCCCACACGGGCGCGGTTaGGTCCAGACGCAGGCACTTCGTTTGTTGCAGGTCCGGGATGCC +
Preference number: 5 (lower is better)
Translates to: EGAEHTLLGGPHGRG*VQTQALRLLQVRDA
Trigger: GGCATCCCGGACCTGCAACAAACGAAGTGCCTGCGTCTGGACCCAACCGCGCCCGTGTGGGCCGCCAAGCAGCGTGTGCTCTGCGCCCTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 90 bp GAAGCCCCCAGGTCCAGCAGGGTCGTCAATGCCCCTGCGTTCCGCTaGCGGGTAGCACAGTGGACGGCTGTCAGCCCATCTCGGGTCCGG +
Preference number: 5 (lower is better)
Translates to: EAPRSSRVVNAPAFR*RVAQWTAVSPSRVR
Trigger: CCGGACCCGAGATGGGCTGACAGCCGTCCACTGTGCTACCCGCCAGCGGAACGCAGGGGCATTGACGACCCTGCTGGACCTGGGGGCTTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 90 bp AGAGGGAGGCCTTGGCCCTCCGGTCCAGCAGCAGGCGGCGCGGAGTaGCCAGGTGCAAATGCCACTTGCGCTCCACTGCCTGGACCTCCT +
Preference number: 5 (lower is better)
Translates to: RGRPWPSGPAAGGAE*PGANATCAPLPGPP
Trigger: AGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCACTCCGCGCCGCCTGCTGCTGGACCGGAGGGCCAAGGCCTCCCTCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS-3UTR CAA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCGAGGCCAGCTGGCCGTaGCAAGGACGTGTCCAAGAC +
Preference number: 5 (lower is better)
Translates to: PRPPGPASAQQAMPATRPEASWP*QGRVQD
Trigger: GTCTTGGACACGTCCTTGCAACGGCCAGCTGGCCTC...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CCCTGGTCCGCGCCCTTACTGTGTGCTGGGTGGGGTTCAGCGGCAGGGGAGGGCAGCGGGGACTTGAGCTaGGGCTTGGGAGGCACTGGT +
Preference number: 5 (lower is better)
Translates to: PWSAPLLCAGWGSAAGEGSGDLS*GLGGTG
Trigger: ACCAGTGCCTCCCAAGCCCAAGCTCAAGTCCCCGCT...GCCCTCCCCTGCCGCTGAACCCCACCCAGCACACAGTAAGGGCGCGGACCAGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACAGAGCACACGCTGCTaGGCGGCCCACACGGGCGCG +
Preference number: 5 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPQSTRC*AAHTGA
Trigger: CGCGCCCGTGTGGGCCGCCAAGCAGCGTGTGCTCTG...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS TCA 90 bp TTCGGCCCTTCACGGTTCCCTCCCAGAAACCGCCCTCCCCAATGCTaGGCACCTTCACGGCCTCGCCGCGGTGCAGCGGGATCTCGCCCT +
Preference number: 5 (lower is better)
Translates to: FGPSRFPPRNRPPQC*APSRPRRGAAGSRP
Trigger: AGGGCGAGATCCCGCTGCACCGCGGCGAGGCCGTGAAGGTGCTCAGCATTGGGGAGGGCGGTTTCTGGGAGGGAACCGTGAAGGGCCGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS-3UTR CAA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCCTGGGCTCCTGCCCATaGCTGGTGGCATGCACAACA +
Preference number: 5 (lower is better)
Translates to: PRPPGPASAQQAMPATRPLGSCP*LVACTT
Trigger: TGTTGTGCATGCCACCAGCAATGGGCAGGAGCCCAG...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGCTGGTGGGCCGCTGCTaGACAGTGGCCGCCCTCGAG +
Preference number: 5 (lower is better)
Translates to: GFGLPGPSPRAIISQATWLVGRC*TVAALE
Trigger: CTCGAGGGCGGCCACTGTCAAGCAGCGGCCCACCAG...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS GCA 90 bp GCCCTCCGGTCCAGCAGCAGGCGGCGCGGAGTGGCCAGGTGCAAATaGCACTTGCGCTCCACTGCCTGGACCTCCTCGTACTCTCTGGAA +
Preference number: 5 (lower is better)
Translates to: ALRSSSRRRGVARCK*HLRSTAWTSSYSLE
Trigger: TTCCAGAGAGTACGAGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCACTCCGCGCCGCCTGCTGCTGGACCGGAGGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS-3UTR CAA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCCCTCTGGAGCAAGAGTaGATGAGGGAGGCTTCGGAG +
Preference number: 5 (lower is better)
Translates to: PRPPGPASAQQAMPATRPPLEQE*MREASE
Trigger: CTCCGAAGCCTCCCTCATCAACTCTTGCTCCAGAGG...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp GGCACACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCTTCATCCAGGAACTaGCCGGCGCGACCCCGGGAG +
Preference number: 5 (lower is better)
Translates to: GTHPCMHPVQASAATSHPSSSRN*PARPRE
Trigger: CTCCCGGGGTCGCGCCGGCAAGTTCCTGGATGAAGA...TGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTGTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS GCA 90 bp GGTCCAGCAGCAGGCGGCGCGGAGTGGCCAGGTGCAAATGCCACTTaGGCTCCACTGCCTGGACCTCCTCGTACTCTCTGGAAGAGGAGT +
Preference number: 5 (lower is better)
Translates to: GPAAGGAEWPGANAT*APLPGPPRTLWKRS
Trigger: ACTCCTCTTCCAGAGAGTACGAGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCACTCCGCGCCGCCTGCTGCTGGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS-3UTR CAA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTGCCTCCAGGCCTGGTTaGAAGCTGGAGCGCACAGTG +
Preference number: 5 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAAASRPG*KLERTV
Trigger: CACTGTGCGCTCCAGCTTCAAACCAGGCCTGGAGGC...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp GTCACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGGGACCGGGAAGGTGTTaGCGAGGCCAGAGCCCGCTC +
Preference number: 5 (lower is better)
Translates to: VTKACPDLACWTRFPLWKGPGRC*RGQSPL
Trigger: GAGCGGGCTCTGGCCTCGCAAACACCTTCCCGGTCC...CTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGTGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CCCATCCAGAACAGCCCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACTTCCCCAGCGGGGACTaGAGCTTGGGCTTGGGAGGC +
Preference number: 5 (lower is better)
Translates to: PIQNSPWGPLHSQAHTGHFPSGD*SLGLGG
Trigger: GCCTCCCAAGCCCAAGCTCAAGTCCCCGCTGGGGAA...GTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCCCACACGGGCGCGGTaGGGTCCAGACGCAGGCACT +
Preference number: 5 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTPTRAR*GPDAGT
Trigger: AGTGCCTGCGTCTGGACCCAACCGCGCCCGTGTGGG...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CGTGTGACGCCCAGCTCCACGAAGTCTTCCTTGGTGAGCGCAGGCAGGTGTGCGTCAGCCGTCATGGACTaGGACCGCAGGGTCAGCGTG +
Preference number: 5 (lower is better)
Translates to: RVTPSSTKSSLVSAGRCASAVMD*DRRVSV
Trigger: CACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGA...CGCACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGAGCTGGGCGTCACACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CAA 90 bp GGGTTTGGGTTACCGGGGCCCAGCCCCAGGGCAATAATTTCCCAGGCCACCTGGGAGAGGCTGGACGACTaGAGGATGGTGGGAGGCGTG +
Preference number: 5 (lower is better)
Translates to: GFGLPGPSPRAIISQATWERLDD*RMVGGV
Trigger: CACGCCTCCCACCATCCTCAAGTCGTCCAGCCTCTC...CCAGGTGGCCTGGGAAATTATTGCCCTGGGGCTGGGCCCCGGTAACCCAAACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS TCA 90 bp GCACAGTGGACGGCTGTCAGCCCATCTCGGGTCCGGAAGTCCAGATaGGCACCGCCGTTGCGGAGAACCTTCAGGAGGTCAGTGGCGTTG +
Preference number: 5 (lower is better)
Translates to: AQWTAVSPSRVRKSR*APPLRRTFRRSVAL
Trigger: CAACGCCACTGACCTCCTGAAGGTTCTCCGCAACGGCGGTGCTCATCTGGACTTCCGGACCCGAGATGGGCTGACAGCCGTCCACTGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS GCA 90 bp CAGGCGGCGCGGAGTGGCCAGGTGCAAATGCCACTTGCGCTCCACTaGCTGGACCTCCTCGTACTCTCTGGAAGAGGAGTCACACTGTGC +
Preference number: 5 (lower is better)
Translates to: QAARSGQVQMPLALH*LDLLVLSGRGVTLC
Trigger: GCACAGTGTGACTCCTCTTCCAGAGAGTACGAGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCACTCCGCGCCGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS-3UTR CAA 90 bp GGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCCTGGGCTCCTGCCCATaGCTGGTGGCATGCACAACA +
Preference number: 5 (lower is better)
Translates to: GTTAQSSTHRAPMRSATPLGSCP*LVACTT
Trigger: TGTTGTGCATGCCACCAGCAATGGGCAGGAGCCCAG...GGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp AGGGGGCCAGGGGACCCTCAGGAGTCTTTGCCTCTCTCCAAGGGCTGTTGTGGCCTCACTGTCCGAGGATaGCTTCAGCAGCGGGTCCCT +
Preference number: 5 (lower is better)
Translates to: RGPGDPQESLPLSKGCCGLTVRG*LQQRVP
Trigger: AGGGACCCGCTGCTGAAGCAATCCTCGGACAGTGAG...GCCACAACAGCCCTTGGAGAGAGGCAAAGACTCCTGAGGGTCCCCTGGCCCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp GACGCTCAGGGTAGGGCAGCGGGCCCAGAGGCGTGCTCGGATCATACAGGCCGGAGACCCACCACTTGCTaGTGTCCAACCTTCACGACA +
Preference number: 5 (lower is better)
Translates to: DAQGRAAGPEACSDHTGRRPTTC*CPTFTT
Trigger: TGTCGTGAAGGTTGGACACAAGCAAGTGGTGGGTCT...CCGGCCTGTATGATCCGAGCACGCCTCTGGGCCCGCTGCCCTACCCTGAGCGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CAA 90 bp CCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACGAGAGGCTGGACGACTaGAGGATGGTGGGAGGCGTG +
Preference number: 5 (lower is better)
Translates to: PMHAPCASFCRHLPPIQNERLDD*RMVGGV
Trigger: CACGCCTCCCACCATCCTCAAGTCGTCCAGCCTCTC...GTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS TCA 90 bp GGAGAGTGGGCCCTGGAGAAGCTGCGGGCTGATCACCTTTCAGGTTaGTATCACTGGCTGAGCGCTGTAAGGGCCGTGGGGATGCCAGGC +
Preference number: 5 (lower is better)
Translates to: GEWALEKLRADHLSG*YHWLSAVRAVGMPG
Trigger: GCCTGGCATCCCCACGGCCCTTACAGCGCTCAGCCAGTGATATCAACCTGAAAGGTGATCAGCCCGCAGCTTCTCCAGGGCCCACTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS GCA 90 bp CCGTGGGGATGCCAGGCCACTCGGGCCAGCCAGACGCCGTCGCTTTaGATAGCTGGGGGTTTCCCTGAATGGTACGACATCGGAGTCTTT +
Preference number: 5 (lower is better)
Translates to: PWGCQATRASQTPSL*IAGGFPEWYDIGVF
Trigger: AAAGACTCCGATGTCGTACCATTCAGGGAAACCCCCAGCTATGCAAAGCGACGGCGTCTGGCTGGCCCGAGTGGCCTGGCATCCCCACGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 90 bp CGGCGCGGAGTGGCCAGGTGCAAATGCCACTTGCGCTCCACTGCCTaGACCTCCTCGTACTCTCTGGAAGAGGAGTCACACTGTGCCAAG +
Preference number: 5 (lower is better)
Translates to: RRGVARCKCHLRSTA*TSSYSLEEESHCAK
Trigger: CTTGGCACAGTGTGACTCCTCTTCCAGAGAGTACGAGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCACTCCGCGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CCA 90 bp CCACCCACCCGAAATGCTCACCAAGTTCCTCGAGCTCAGCCGTCATaGACTTGGACCGCAGGGTCAGCGTGGTGCTGGGAGCCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: PPTRNAHQVPRAQPS*TWTAGSAWCWEPSL
Trigger: CAAAGAGGGCTCCCAGCACCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGAGCTCGAGGAACTTGGTGAGCATTTCGGGTGGGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS-3UTR CAA 90 bp GGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAACGAAGCGCACTTCCTaGGGTTCGTGCGGGATGGAG +
Preference number: 5 (lower is better)
Translates to: GPLHSQAHTGHPCAQPHPTKRTS*GSCGME
Trigger: CTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCGT...TGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CAA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCTCGCCCACATCGAACTaGCTCCAGAGCTGCAGGGGC +
Preference number: 5 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPSPTSN*LQSCRG
Trigger: GCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGCGA...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS-3UTR CAA 90 bp AGGGGGCCAGGGGACCCTCAGGAGTCTTTGCCTCTCTCCAAGGGCTGTTGTGGCTCCACGAAGTCTTCCTaGGTGAGCGCAGGCAGGTGT +
Preference number: 5 (lower is better)
Translates to: RGPGDPQESLPLSKGCCGSTKSS*VSAGRC
Trigger: ACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGA...GCCACAACAGCCCTTGGAGAGAGGCAAAGACTCCTGAGGGTCCCCTGGCCCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS CCA 90 bp AGTCCAGATGAGCACCGCCGTTGCGGAGAACCTTCAGGAGGTCAGTaGCGTTGTCCAACTGTGCCGCAAGGCTCAGAGGGCACTCTCCTG +
Preference number: 5 (lower is better)
Translates to: SPDEHRRCGEPSGGQ*RCPTVPQGSEGTLL
Trigger: CAGGAGAGTGCCCTCTGAGCCTTGCGGCACAGTTGGACAACGCCACTGACCTCCTGAAGGTTCTCCGCAACGGCGGTGCTCATCTGGACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000135214.2
CDS-3UTR CAA 90 bp ACCACGAAGCGCACTTCCTTGGGTTCGTGCGGGATGGAGAGGCTGGACGACTTGGCACTGTGTCCTGCATaGACGTGCTGCGTGGGAAGC +
Preference number: 5 (lower is better)
Translates to: TTKRTSLGSCGMERLDDLALCPA*TCCVGS
Trigger: GCTTCCCACGCAGCACGTCAATGCAGGACACAGTGC...CAAGTCGTCCAGCCTCTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCGTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CAA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTGTCAGCAGGATCCCATaGGCAAACTCTTCAGGGGGT +
Preference number: 5 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAAVSRIP*ANSSGG
Trigger: ACCCCCTGAAGAGTTTGCCAATGGGATCCTGCTGAC...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCATTCCCCAGCGGGGACTaGAGCTTGGGCTTGGGAGGC +
Preference number: 5 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSFPSGD*SLGLGG
Trigger: GCCTCCCAAGCCCAAGCTCAAGTCCCCGCTGGGGAA...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CCCAGGCCACCTGGCCCTGCTAGTGCCCAGCAGGCAATGCCTGCCACCCGTCCCTCTTCAGGTTTGCCTTaGTGTGTAGCTTTGCAAACT +
Preference number: 5 (lower is better)
Translates to: PRPPGPASAQQAMPATRPSSGLP*CVALQT
Trigger: AGTTTGCAAAGCTACACACAAAGGCAAACCTGAAGA...GGGACGGGTGGCAGGCATTGCCTGCTGGGCACTAGCAGGGCCAGGTGGCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp TGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCACACCCAGTTTTCACCAGACGCCGTCGCTTaGCATAGCTGGGGGTTTCCC +
Preference number: 5 (lower is better)
Translates to: CTVKHTQGTHALSHTQFSPDAVA*HSWGFP
Trigger: GGGAAACCCCCAGCTATGCAAAGCGACGGCGTCTGG...TGAAAACTGGGTGTGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CCCTGCCCTGTATGGGGTGGCAGTGAGGGGCCAGAGATGGAAGACTGGGCAGCTAGACCCACCACTTGCTaGTGTCCAACCTTCACGACA +
Preference number: 5 (lower is better)
Translates to: PCPVWGGSEGPEMEDWAARPTTC*CPTFTT
Trigger: TGTCGTGAAGGTTGGACACAAGCAAGTGGTGGGTCT...AGCTGCCCAGTCTTCCATCTCTGGCCCCTCACTGCCACCCCATACAGGGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 90 bp CCACCTGGAAGGCTGTCTGGCTGTTGTAATTGCGGACGTCCTTGTTaGCACCACGGAAAAGCAGGACGCGCGCGCAACTCTCCTGGTTGT +
Preference number: 5 (lower is better)
Translates to: PPGRLSGCCNCGRPC*HHGKAGRARNSPGC
Trigger: ACAACCAGGAGAGTTGCGCGCGCGTCCTGCTTTTCCGTGGTGCCAACAAGGACGTCCGCAATTACAACAGCCAGACAGCCTTCCAGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 90 bp CCAGGATCTCATCCAACTTCTCAAGTTCCTCGAGCTCAGCCGTCATaGACTTGGACCGCAGGGTCAGCGTGGTGCTGGGAGCCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: PGSHPTSQVPRAQPS*TWTAGSAWCWEPSL
Trigger: CAAAGAGGGCTCCCAGCACCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGAGCTCGAGGAACTTGAGAAGTTGGATGAGATCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS-3UTR CAA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACAGCCTCCAGGCCTGGTTaGAAGCTGGAGCGCACAGTG +
Preference number: 5 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTASRPG*KLERTV
Trigger: CACTGTGCGCTCCAGCTTCAAACCAGGCCTGGAGGC...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CCCATCCAGAACAGCCCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACAGGATCATGGACTTCTaGTCCTCTGGTGACTTCCGC +
Preference number: 5 (lower is better)
Translates to: PIQNSPWGPLHSQAHTGHRIMDF*SSGDFR
Trigger: GCGGAAGTCACCAGAGGACAAGAAGTCCATGATCCT...GTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGGGCTGTTCTGGATGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACAGAGGCCAGCTGGCCGTaGCAAGGACGTGTCCAAGAC +
Preference number: 5 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTEASWP*QGRVQD
Trigger: GTCTTGGACACGTCCTTGCAACGGCCAGCTGGCCTC...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGAACCTGATCACAGTTGGTTaGTCATCTTCAGGCCCAGGG +
Preference number: 5 (lower is better)
Translates to: PMHAPCASFCRHLPPIQNLITVG*SSSGPG
Trigger: CCCTGGGCCTGAAGATGACAAACCAACTGTGATCAG...GTTCTGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CACACCCATGCATGCACCCTGTGCAAGCTTCTGCCGCCACCTCCCACCCATCCAGTAGTTGAGCGCGTCTaGAAGGCTATGATTGAGGGC +
Preference number: 5 (lower is better)
Translates to: HTHACTLCKLLPPPPTHPVVERV*KAMIEG
Trigger: GCCCTCAATCATAGCCTTCAAGACGCGCTCAACTAC...TGGATGGGTGGGAGGTGGCGGCAGAAGCTTGCACAGGGTGCATGCATGGGTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CCCTGGGGACCACTGCACAGTCAAGCACACACAGGGCACCCATGCGCTCAGCCAACGACATCGGAGTCTTaGTGGGTCTTGATTACCTCG +
Preference number: 5 (lower is better)
Translates to: PWGPLHSQAHTGHPCAQPTTSES*WVLITS
Trigger: CGAGGTAATCAAGACCCACAAAGACTCCGATGTCGT...TGGCTGAGCGCATGGGTGCCCTGTGTGTGCTTGACTGTGCAGTGGTCCCCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACATCAGCCGTCATGGACTaGGACCGCAGGGTCAGCGTG +
Preference number: 5 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTSAVMD*DRRVSV
Trigger: CACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGA...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGTCGCCCACATCGAACTaGCTCCAGAGCTGCAGGGGC +
Preference number: 5 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVSPTSN*LQSCRG
Trigger: GCCCCTGCAGCTCTGGAGCAAGTTCGATGTGGGCGA...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS CCA 90 bp CCTCTGGAGCAAGAGTTGATGAGGGAGGCTTCGGAGAGTGGGCCCTaGAGAAGCTGCGGGCTGATCACCTTTCAGGTTGATATCACTGGC +
Preference number: 5 (lower is better)
Translates to: PLEQELMREASESGP*RSCGLITFQVDITG
Trigger: GCCAGTGATATCAACCTGAAAGGTGATCAGCCCGCAGCTTCTCCAGGGCCCACTCTCCGAAGCCTCCCTCATCAACTCTTGCTCCAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 90 bp CTTTTCTTCTCCGAATGGAAGCAAGTTCCTCGAGCTCAGCCGTCATaGACTTGGACCGCAGGGTCAGCGTGGTGCTGGGAGCCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: LFFSEWKQVPRAQPS*TWTAGSAWCWEPSL
Trigger: CAAAGAGGGCTCCCAGCACCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGAGCTCGAGGAACTTGCTTCCATTCGGAGAAGAAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000230807.2
CDS-3UTR CAA 90 bp TGCTCGCCTAAGTGGATGCTCTCCAGCCAGTCGCCCACATCGAACTTGCTCCAGGTCAGCAGGATCCCATaGGCAAACTCTTCAGGGGGT +
Preference number: 5 (lower is better)
Translates to: CSPKWMLSSQSPTSNLLQVSRIP*ANSSGG
Trigger: ACCCCCTGAAGAGTTTGCCAATGGGATCCTGCTGAC...CTGGAGCAAGTTCGATGTGGGCGACTGGCTGGAGAGCATCCACTTAGGCGAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS-3UTR CAA 90 bp AAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGAGCGGGGACTTGAGCTaGGGCTTGGGAGGCACTGGT +
Preference number: 5 (lower is better)
Translates to: KGFTKNPCLSWVRFGEEGSGDLS*GLGGTG
Trigger: ACCAGTGCCTCCCAAGCCCAAGCTCAAGTCCCCGCT...CCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACACTCACTGTCCGAGGATaGCTTCAGCAGCGGGTCCCT +
Preference number: 5 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTLTVRG*LQQRVP
Trigger: AGGGACCCGCTGCTGAAGCAATCCTCGGACAGTGAG...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp AAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCCTGCCCCTGATCACAGTTGGTTaGTCATCTTCAGGCCCAGGG +
Preference number: 5 (lower is better)
Translates to: KNGHQELWRKWSGQSTLPLITVG*SSSGPG
Trigger: CCCTGGGCCTGAAGATGACAAACCAACTGTGATCAG...GGGCAGGGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGCAGGCACTTCGTTTGTaGCAGGTCCGGGATGCCGAC +
Preference number: 5 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVQALRL*QVRDAD
Trigger: GTCGGCATCCCGGACCTGCAACAAACGAAGTGCCTG...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CTCTGGAAGAATGGCCACCAGGAGCTATGGAGGAAGTGGTCAGGCCAGAGCACCTCCTCCCCTACAGATTaGGTCCGTGGAATCCCCTTC +
Preference number: 5 (lower is better)
Translates to: LWKNGHQELWRKWSGQSTSSPTD*VRGIPF
Trigger: GAAGGGGATTCCACGGACCAAATCTGTAGGGGAGGA...GGTGCTCTGGCCTGACCACTTCCTCCATAGCTCCTGGTGGCCATTCTTCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACAACGAAGCGCACTTCCTaGGGTTCGTGCGGGATGGAG +
Preference number: 5 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTTKRTS*GSCGME
Trigger: CTCCATCCCGCACGAACCCAAGGAAGTGCGCTTCGT...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS GCA 90 bp CTGATGGATCTCTTGCCAACCATTCTCATCAGTGGTCCCCAGCTGTaGATGATCATGGAGAAGCAGCTCGCAACAGAGGGCATCCCCGCC +
Preference number: 5 (lower is better)
Translates to: LMDLLPTILISGPQL*MIMEKQLATEGIPA
Trigger: GGCGGGGATGCCCTCTGTTGCGAGCTGCTTCTCCATGATCATGCACAGCTGGGGACCACTGATGAGAATGGTTGGCAAGAGATCCATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 90 bp CCAGCCCTCCAGGCCACACCTTCCACATCTACAGACTCAAGGTATTaGAGTGCAGGGAAGGCAGGTGTGGGTGTAAACTCCTCAATGGGG +
Preference number: 5 (lower is better)
Translates to: PALQATPSTSTDSRY*SAGKAGVGVNSSMG
Trigger: CCCCATTGAGGAGTTTACACCCACACCTGCCTTCCCTGCACTCCAATACCTTGAGTCTGTAGATGTGGAAGGTGTGGCCTGGAGGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS-3UTR CAA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGCACTGTGTCCTGCATaGACGTGCTGCGTGGGAAGC +
Preference number: 5 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGALCPA*TCCVGS
Trigger: GCTTCCCACGCAGCACGTCAATGCAGGACACAGTGC...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGCTGTGGAAATGGTGCTaGTGGTCTCCAGGTGGGGGT +
Preference number: 5 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVLWKWC*WSPGGG
Trigger: ACCCCCACCTGGAGACCACAAGCACCATTTCCACAG...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp GGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGACACTGTGGAAATGGTGCTaGTGGTCTCCAGGTGGGGGT +
Preference number: 5 (lower is better)
Translates to: GFTKNPCLSWVRFGEEGTLWKWC*WSPGGG
Trigger: ACCCCCACCTGGAGACCACAAGCACCATTTCCACAG...TGTCCCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CATTATGTGGCGCACACACACACACAGGGCAGGAATTGGGGAGTCTTTGGGGTGTCCACGAAGTCTTCCTaGGTGAGCGCAGGCAGGTGT +
Preference number: 5 (lower is better)
Translates to: HYVAHTHTQGRNWGVFGVSTKSS*VSAGRC
Trigger: ACACCTGCCTGCGCTCACCAAGGAAGACTTCGTGGA...CACCCCAAAGACTCCCCAATTCCTGCCCTGTGTGTGTGTGTGCGCCACATAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000238458.2
CDS GCA 90 bp CCTCCAGGCCACACCTTCCACATCTACAGACTCAAGGTATTGGAGTaGAGGGAAGGCAGGTGTGGGTGTAAACTCCTCAATGGGGGTCTC +
Preference number: 5 (lower is better)
Translates to: PPGHTFHIYRLKVLE*REGRCGCKLLNGGL
Trigger: GAGACCCCCATTGAGGAGTTTACACCCACACCTGCCTTCCCTGCACTCCAATACCTTGAGTCTGTAGATGTGGAAGGTGTGGCCTGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS-3UTR CAA 90 bp TCAGCGGCAGGGGAGGGCACTAAGCAATGTACAGGGCAAGTCTCCAAGCAACAGAGGATCATGGACTTCTaGTCCTCTGGTGACTTCCGC +
Preference number: 5 (lower is better)
Translates to: SAAGEGTKQCTGQVSKQQRIMDF*SSGDFR
Trigger: GCGGAAGTCACCAGAGGACAAGAAGTCCATGATCCT...CTGTTGCTTGGAGACTTGCCCTGTACATTGCTTAGTGCCCTCCCCTGCCGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039074.14
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp CTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGAATGGCCACCAGGAGCAGCTTTGCAAACTGCTaGTCATCTATGAGGTTCTGG +
Preference number: 5 (lower is better)
Translates to: LTSHAGLGSPSGRMATRSSFANC*SSMRFW
Trigger: CCAGAACCTCATAGATGACAAGCAGTTTGCAAAGCT...GCTCCTGGTGGCCATTCTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 90 bp CAAAGCGACAGGCCTGATGGATCTCTTGCCAACCATTCTCATCAGTaGTCCCCAGCTGTGCATGATCATGGAGAAGCAGCTCGCAACAGA +
Preference number: 5 (lower is better)
Translates to: QSDRPDGSLANHSHQ*SPAVHDHGEAARNR
Trigger: TCTGTTGCGAGCTGCTTCTCCATGATCATGCACAGCTGGGGACCACTGATGAGAATGGTTGGCAAGAGATCCATCAGGCCTGTCGCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS-3UTR CAA 90 bp GTCACCAAGGCGTGTCCTGACCTCGCATGCTGGACTAGGTTCCCCCTCTGGAAGCCTTTGTGTGTAGCTTaGCAAACTGCTTGTCATCTA +
Preference number: 5 (lower is better)
Translates to: VTKACPDLACWTRFPLWKPLCVA*QTACHL
Trigger: TAGATGACAAGCAGTTTGCAAAGCTACACACAAAGG...CTTCCAGAGGGGGAACCTAGTCCAGCATGCGAGGTCAGGACACGCCTTGGTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS GCA 90 bp CACTGCCTGGACCTCCTCGTACTCTCTGGAAGAGGAGTCACACTGTaGCAAGATCTTGTTCAGGCTGCGGCTAGATGCAAACTTCTTCAT +
Preference number: 5 (lower is better)
Translates to: HCLDLLVLSGRGVTL*QDLVQAAARCKLLH
Trigger: ATGAAGAAGTTTGCATCTAGCCGCAGCCTGAACAAGATCTTGGCACAGTGTGACTCCTCTTCCAGAGAGTACGAGGAGGTCCAGGCAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS-3UTR CAA 90 bp GAAAGGATTCACGAAGAATCCCTGCTTAAGCTGGGTGAGGTTTGGGGAGGAGGGGAGTCTTTGTGGGTCTaGATTACCTCGGCAAGCTCA +
Preference number: 5 (lower is better)
Translates to: ERIHEESLLKLGEVWGGGESLWV*ITSASS
Trigger: TGAGCTTGCCGAGGTAATCAAGACCCACAAAGACTC...CCCTCCTCCCCAAACCTCACCCAGCTTAAGCAGGGATTCTTCGTGAATCCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS GCA 72 bp CCAGACGCAGGCACTTCGTTTGTTGCAGGTCCGGGATaGCGACGCGCACGACCACGGCGCTGGCCCCGGGGC +
Preference number: 6 (lower is better)
Translates to: PDAGTSFVAGPG*RRARPRRWPRG
Trigger: GCCCCGGGGCCAGCGCCGTGGTCGTGCGCGTCGGCATCCCGGACCTGCAACAAACGAAGTGCCTGCGTCTGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS GCA 72 bp TCCCCAATGCTGAGCACCTTCACGGCCTCGCCGCGGTaGAGCGGGATCTCGCCCTCGCCCTGCGGGCTGTGC +
Preference number: 6 (lower is better)
Translates to: SPMLSTFTASPR*SGISPSPCGLC
Trigger: GCACAGCCCGCAGGGCGAGGGCGAGATCCCGCTGCACCGCGGCGAGGCCGTGAAGGTGCTCAGCATTGGGGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS CAA 90 bp GGAGCCCTCTTTGGGGGTGGTGGGGCTGCAAAGAAGAGGGAGGCCTaGGCCCTCCGGTCCAGCAGCAGGCGGCGCGGAGTGGCCAGGTGC +
Preference number: 6 (lower is better)
Translates to: GALFGGGGAAKKREA*ALRSSSRRRGVARC
Trigger: GCACCTGGCCACTCCGCGCCGCCTGCTGCTGGACCGGAGGGCCAAGGCCTCCCTCTTCTTTGCAGCCCCACCACCCCCAAAGAGGGCTCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CCA 72 bp CAGGGTCAGCGTGGTGCTGGGAGCCCTCTTTGGGGGTaGTGGGGCTCTGCGCCGAGCACCATCCTCCTCGGG +
Preference number: 6 (lower is better)
Translates to: QGQRGAGSPLWG*WGSAPSTILLG
Trigger: CCCGAGGAGGATGGTGCTCGGCGCAGAGCCCCACCACCCCCAAAGAGGGCTCCCAGCACCACGCTGACCCTG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS CCA 72 bp TTGGGGGTGGTGGGGCTGCAAAGAAGAGGGAGGCCTTaGCCCTCCGGTCCAGCAGCAGGCGGCGCGGAGTGG +
Preference number: 6 (lower is better)
Translates to: LGVVGLQRRGRP*PSGPAAGGAEW
Trigger: CCACTCCGCGCCGCCTGCTGCTGGACCGGAGGGCCAAGGCCTCCCTCTTCTTTGCAGCCCCACCACCCCCAA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS TCA 72 bp TCACGGTTCCCTCCCAGAAACCGCCCTCCCCAATGCTaGGCACCTTCACGGCCTCGCCGCGGTGCAGCGGGA +
Preference number: 6 (lower is better)
Translates to: SRFPPRNRPPQC*APSRPRRGAAG
Trigger: TCCCGCTGCACCGCGGCGAGGCCGTGAAGGTGCTCAGCATTGGGGAGGGCGGTTTCTGGGAGGGAACCGTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS GCA 72 bp CGAAGCCCCCAGGTCCAGCAGGGTCGTCAATGCCCCTaGGTTCCGCTGGCGGGTAGCACAGTGGACGGCTGT +
Preference number: 6 (lower is better)
Translates to: RSPQVQQGRQCP*VPLAGSTVDGC
Trigger: ACAGCCGTCCACTGTGCTACCCGCCAGCGGAACGCAGGGGCATTGACGACCCTGCTGGACCTGGGGGCTTCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS GCA 72 bp GTCAGGCGAAGCCCCCAGGTCCAGCAGGGTCGTCAATaGCCCTGCGTTCCGCTGGCGGGTAGCACAGTGGAC +
Preference number: 6 (lower is better)
Translates to: VRRSPQVQQGRQ*PCVPLAGSTVD
Trigger: GTCCACTGTGCTACCCGCCAGCGGAACGCAGGGGCATTGACGACCCTGCTGGACCTGGGGGCTTCGCCTGAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS TCA 72 bp ACTCGGGACCACCGCGCAGCGAGCTGCTGCAATGGGTaGCTTCTTAGCAGGGTCCAGCAGGCTGCCCAGGCC +
Preference number: 6 (lower is better)
Translates to: TRDHRAASCCNG*LLSRVQQAAQA
Trigger: GGCCTGGGCAGCCTGCTGGACCCTGCTAAGAAGTCACCCATTGCAGCAGCTCGCTGCGCGGTGGTCCCGAGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039074.14
CDS TCA 72 bp CGCCCTCGCCCTGCGGGCTGTGCGCCTTCACAGCGATaGACTTGCGGCCGGGGACGGCACTGTAAAGTTTCC +
Preference number: 6 (lower is better)
Translates to: RPRPAGCAPSQR*TCGRGRHCKVS
Trigger: GGAAACTTTACAGTGCCGTCCCCGGCCGCAAGTTCATCGCTGTGAAGGCGCACAGCCCGCAGGGCGAGGGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS GCA 72 bp GCAGGCGGCGCGGAGTGGCCAGGTGCAAATGCCACTTaGGCTCCACTGCCTGGACCTCCTCGTACTCTCTGG +
Preference number: 6 (lower is better)
Translates to: AGGAEWPGANAT*APLPGPPRTLW
Trigger: CCAGAGAGTACGAGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCACTCCGCGCCGCCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS GCA 72 bp TCCAGCAGCAGGCGGCGCGGAGTGGCCAGGTGCAAATaGCACTTGCGCTCCACTGCCTGGACCTCCTCGTAC +
Preference number: 6 (lower is better)
Translates to: SSSRRRGVARCK*HLRSTAWTSSY
Trigger: GTACGAGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCACTCCGCGCCGCCTGCTGCTGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CCA 72 bp GAGCACACGCTGCTTGGCGGCCCACACGGGCGCGGTTaGGTCCAGACGCAGGCACTTCGTTTGTTGCAGGTC +
Preference number: 6 (lower is better)
Translates to: EHTLLGGPHGRG*VQTQALRLLQV
Trigger: GACCTGCAACAAACGAAGTGCCTGCGTCTGGACCCAACCGCGCCCGTGTGGGCCGCCAAGCAGCGTGTGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 72 bp GTCAATGCCCCTGCGTTCCGCTGGCGGGTAGCACAGTaGACGGCTGTCAGCCCATCTCGGGTCCGGAAGTCC +
Preference number: 6 (lower is better)
Translates to: VNAPAFRWRVAQ*TAVSPSRVRKS
Trigger: GGACTTCCGGACCCGAGATGGGCTGACAGCCGTCCACTGTGCTACCCGCCAGCGGAACGCAGGGGCATTGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CAA 90 bp CGGTCCAGCAGCAGGCGGCGCGGAGTGGCCAGGTGCAAATGCCACTaGCGCTCCACTGCCTGGACCTCCTCGTACTCTCTGGAAGAGGAG +
Preference number: 6 (lower is better)
Translates to: RSSSRRRGVARCKCH*RSTAWTSSYSLEEE
Trigger: CTCCTCTTCCAGAGAGTACGAGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCACTCCGCGCCGCCTGCTGCTGGACCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CAA 72 bp AGAGCACACGCTGCTTGGCGGCCCACACGGGCGCGGTaGGGTCCAGACGCAGGCACTTCGTTTGTTGCAGGT +
Preference number: 6 (lower is better)
Translates to: RAHAAWRPTRAR*GPDAGTSFVAG
Trigger: ACCTGCAACAAACGAAGTGCCTGCGTCTGGACCCAACCGCGCCCGTGTGGGCCGCCAAGCAGCGTGTGCTCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CAA 72 bp AGCAGGCGGCGCGGAGTGGCCAGGTGCAAATGCCACTaGCGCTCCACTGCCTGGACCTCCTCGTACTCTCTG +
Preference number: 6 (lower is better)
Translates to: SRRRGVARCKCH*RSTAWTSSYSL
Trigger: CAGAGAGTACGAGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCACTCCGCGCCGCCTGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CAA 90 bp CACCCGAAATGCTCACCAAGTTCCTCGAGCTCAGCCGTCATGGACTaGGACCGCAGGGTCAGCGTGGTGCTGGGAGCCCTCTTTGGGGGT +
Preference number: 6 (lower is better)
Translates to: HPKCSPSSSSSAVMD*DRRVSVVLGALFGG
Trigger: ACCCCCAAAGAGGGCTCCCAGCACCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGAGCTCGAGGAACTTGGTGAGCATTTCGGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS TCA 72 bp ACGGCTGTCAGCCCATCTCGGGTCCGGAAGTCCAGATaGGCACCGCCGTTGCGGAGAACCTTCAGGAGGTCA +
Preference number: 6 (lower is better)
Translates to: TAVSPSRVRKSR*APPLRRTFRRS
Trigger: TGACCTCCTGAAGGTTCTCCGCAACGGCGGTGCTCATCTGGACTTCCGGACCCGAGATGGGCTGACAGCCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000135214.2
CDS GCA 72 bp TGCCAGGCCACTCGGGCCAGCCAGACGCCGTCGCTTTaGATAGCTGGGGGTTTCCCTGAATGGTACGACATC +
Preference number: 6 (lower is better)
Translates to: CQATRASQTPSL*IAGGFPEWYDI
Trigger: GATGTCGTACCATTCAGGGAAACCCCCAGCTATGCAAAGCGACGGCGTCTGGCTGGCCCGAGTGGCCTGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CAA 90 bp CTTCTCCGAATGGAAGCAAGTTCCTCGAGCTCAGCCGTCATGGACTaGGACCGCAGGGTCAGCGTGGTGCTGGGAGCCCTCTTTGGGGGT +
Preference number: 6 (lower is better)
Translates to: LLRMEASSSSSAVMD*DRRVSVVLGALFGG
Trigger: ACCCCCAAAGAGGGCTCCCAGCACCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGAGCTCGAGGAACTTGCTTCCATTCGGAGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000230807.2
CDS TCA 72 bp GCCCTGGAGAAGCTGCGGGCTGATCACCTTTCAGGTTaGTATCACTGGCTGAGCGCTGTAAGGGCCGTGGGG +
Preference number: 6 (lower is better)
Translates to: ALEKLRADHLSG*YHWLSAVRAVG
Trigger: CCCCACGGCCCTTACAGCGCTCAGCCAGTGATATCAACCTGAAAGGTGATCAGCCCGCAGCTTCTCCAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS GCA 72 bp CATCTCGGGTCCGGAAGTCCAGATGAGCACCGCCGTTaGGGAGAACCTTCAGGAGGTCAGTGGCGTTGTCCA +
Preference number: 6 (lower is better)
Translates to: HLGSGSPDEHRR*GEPSGGQWRCP
Trigger: TGGACAACGCCACTGACCTCCTGAAGGTTCTCCGCAACGGCGGTGCTCATCTGGACTTCCGGACCCGAGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000135214.2
CDS GCA 72 bp CGGAGTGGCCAGGTGCAAATGCCACTTGCGCTCCACTaGCTGGACCTCCTCGTACTCTCTGGAAGAGGAGTC +
Preference number: 6 (lower is better)
Translates to: RSGQVQMPLALH*LDLLVLSGRGV
Trigger: GACTCCTCTTCCAGAGAGTACGAGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCACTCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CCA 72 bp TCCGAATGGAAGCAAGTTCCTCGAGCTCAGCCGTCATaGACTTGGACCGCAGGGTCAGCGTGGTGCTGGGAG +
Preference number: 6 (lower is better)
Translates to: SEWKQVPRAQPS*TWTAGSAWCWE
Trigger: CTCCCAGCACCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGAGCTCGAGGAACTTGCTTCCATTCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109309.9
ENSMUST00000230807.2
CDS CCA 72 bp CGAAATGCTCACCAAGTTCCTCGAGCTCAGCCGTCATaGACTTGGACCGCAGGGTCAGCGTGGTGCTGGGAG +
Preference number: 6 (lower is better)
Translates to: RNAHQVPRAQPS*TWTAGSAWCWE
Trigger: CTCCCAGCACCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGAGCTCGAGGAACTTGGTGAGCATTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229559.2
CDS TCA 72 bp AGGCTTCGGAGAGTGGGCCCTGGAGAAGCTGCGGGCTaGTCACCTTTCAGGTTGATATCACTGGCTGAGCGC +
Preference number: 6 (lower is better)
Translates to: RLRRVGPGEAAG*SPFRLISLAER
Trigger: GCGCTCAGCCAGTGATATCAACCTGAAAGGTGATCAGCCCGCAGCTTCTCCAGGGCCCACTCTCCGAAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 72 bp GTGGCCAGGTGCAAATGCCACTTGCGCTCCACTGCCTaGACCTCCTCGTACTCTCTGGAAGAGGAGTCACAC +
Preference number: 6 (lower is better)
Translates to: VARCKCHLRSTA*TSSYSLEEESH
Trigger: GTGTGACTCCTCTTCCAGAGAGTACGAGGAGGTCCAGGCAGTGGAGCGCAAGTGGCATTTGCACCTGGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CCA 72 bp CATCCAACTTCTCAAGTTCCTCGAGCTCAGCCGTCATaGACTTGGACCGCAGGGTCAGCGTGGTGCTGGGAG +
Preference number: 6 (lower is better)
Translates to: HPTSQVPRAQPS*TWTAGSAWCWE
Trigger: CTCCCAGCACCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGAGCTCGAGGAACTTGAGAAGTTGGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CAA 90 bp ATCTCATCCAACTTCTCAAGTTCCTCGAGCTCAGCCGTCATGGACTaGGACCGCAGGGTCAGCGTGGTGCTGGGAGCCCTCTTTGGGGGT +
Preference number: 6 (lower is better)
Translates to: ISSNFSSSSSSAVMD*DRRVSVVLGALFGG
Trigger: ACCCCCAAAGAGGGCTCCCAGCACCACGCTGACCCTGCGGTCCAAGTCCATGACGGCTGAGCTCGAGGAACTTGAGAAGTTGGATGAGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS GCA 72 bp TGCAATGTCCGGCCTCAGTGTCGGCTCCGCGGCAACTaGCAGGATCTCATCCAACTTCTCAAGTTCCTCGAG +
Preference number: 6 (lower is better)
Translates to: CNVRPQCRLRGN*QDLIQLLKFLE
Trigger: CTCGAGGAACTTGAGAAGTTGGATGAGATCCTGGCAGTTGCCGCGGAGCCGACACTGAGGCCGGACATTGCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CCA 72 bp AGGCTGTCTGGCTGTTGTAATTGCGGACGTCCTTGTTaGCACCACGGAAAAGCAGGACGCGCGCGCAACTCT +
Preference number: 6 (lower is better)
Translates to: RLSGCCNCGRPC*HHGKAGRARNS
Trigger: AGAGTTGCGCGCGCGTCCTGCTTTTCCGTGGTGCCAACAAGGACGTCCGCAATTACAACAGCCAGACAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CAA 72 bp ACGGTCTTTCTCCTCCTGAAGCCTCTGGAGCAAGAGTaGATGAGGGAGGCTTCGGAGAGTGGGCCCTGGAGA +
Preference number: 6 (lower is better)
Translates to: TVFLLLKPLEQE*MREASESGPWR
Trigger: TCTCCAGGGCCCACTCTCCGAAGCCTCCCTCATCAACTCTTGCTCCAGAGGCTTCAGGAGGAGAAAGACCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS TCA 72 bp ACAGACACAACCTTCATGACCAGGCGGTTGCCACCCTaGCGGATGAGACCCACCACTTGCTTGTGTCCAACC +
Preference number: 6 (lower is better)
Translates to: TDTTFMTRRLPP*RMRPTTCLCPT
Trigger: GGTTGGACACAAGCAAGTGGTGGGTCTCATCCGTCAGGGTGGCAACCGCCTGGTCATGAAGGTTGTGTCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS CCA 72 bp TGTAGTGGCGGAAGAGACGCTTCGTCCGGTCCTCTCTaGTTTCATGCCGGGTGTCATACTGTCGCATCTGCA +
Preference number: 6 (lower is better)
Translates to: CSGGRDASSGPL*FHAGCHTVASA
Trigger: TGCAGATGCGACAGTATGACACCCGGCATGAAACCAGAGAGGACCGGACGAAGCGTCTCTTCCGCCACTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS CAA 72 bp CAGGCGGTTGCCACCCTGACGGATGAGACCCACCACTaGCTTGTGTCCAACCTTCACGACATTCACTCCGTT +
Preference number: 6 (lower is better)
Translates to: QAVATLTDETHH*LVSNLHDIHSV
Trigger: AACGGAGTGAATGTCGTGAAGGTTGGACACAAGCAAGTGGTGGGTCTCATCCGTCAGGGTGGCAACCGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS CAA 90 bp TCCAGCCCTCCAGGCCACACCTTCCACATCTACAGACTCAAGGTATaGGAGTGCAGGGAAGGCAGGTGTGGGTGTAAACTCCTCAATGGG +
Preference number: 6 (lower is better)
Translates to: SSPPGHTFHIYRLKV*ECREGRCGCKLLNG
Trigger: CCCATTGAGGAGTTTACACCCACACCTGCCTTCCCTGCACTCCAATACCTTGAGTCTGTAGATGTGGAAGGTGTGGCCTGGAGGGCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS TCA 72 bp TGCCAACCATTCTCATCAGTGGTCCCCAGCTGTGCATaGTCATGGAGAAGCAGCTCGCAACAGAGGGCATCC +
Preference number: 6 (lower is better)
Translates to: CQPFSSVVPSCA*SWRSSSQQRAS
Trigger: GGATGCCCTCTGTTGCGAGCTGCTTCTCCATGATCATGCACAGCTGGGGACCACTGATGAGAATGGTTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS TCA 72 bp GTCCAACCTTCACGACATTCACTCCGTTCACCTCAATaGGGAAGTCCCCAGTTCGAAGTCCAGCCCTCCAGG +
Preference number: 6 (lower is better)
Translates to: VQPSRHSLRSPQ*GSPQFEVQPSR
Trigger: CCTGGAGGGCTGGACTTCGAACTGGGGACTTCCTCATTGAGGTGAACGGAGTGAATGTCGTGAAGGTTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS GCA 72 bp CTCTTGCCAACCATTCTCATCAGTGGTCCCCAGCTGTaGATGATCATGGAGAAGCAGCTCGCAACAGAGGGC +
Preference number: 6 (lower is better)
Translates to: LLPTILISGPQL*MIMEKQLATEG
Trigger: GCCCTCTGTTGCGAGCTGCTTCTCCATGATCATGCACAGCTGGGGACCACTGATGAGAATGGTTGGCAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CAA 90 bp CTTCATGACCAGGCGGTTGCCACCCTGACGGATGAGACCCACCACTaGCTTGTGTCCAACCTTCACGACATTCACTCCGTTCACCTCAAT +
Preference number: 6 (lower is better)
Translates to: LHDQAVATLTDETHH*LVSNLHDIHSVHLN
Trigger: ATTGAGGTGAACGGAGTGAATGTCGTGAAGGTTGGACACAAGCAAGTGGTGGGTCTCATCCGTCAGGGTGGCAACCGCCTGGTCATGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS CCA 72 bp CAGGCCACACCTTCCACATCTACAGACTCAAGGTATTaGAGTGCAGGGAAGGCAGGTGTGGGTGTAAACTCC +
Preference number: 6 (lower is better)
Translates to: QATPSTSTDSRY*SAGKAGVGVNS
Trigger: GGAGTTTACACCCACACCTGCCTTCCCTGCACTCCAATACCTTGAGTCTGTAGATGTGGAAGGTGTGGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS CCA 72 bp ACTTGCGCTCCACTGCCTGGACCTCCTCGTACTCTCTaGAAGAGGAGTCACACTGTGCCAAGATCTTGTTCA +
Preference number: 6 (lower is better)
Translates to: TCAPLPGPPRTL*KRSHTVPRSCS
Trigger: TGAACAAGATCTTGGCACAGTGTGACTCCTCTTCCAGAGAGTACGAGGAGGTCCAGGCAGTGGAGCGCAAGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS GCA 72 bp GACCTCCTCGTACTCTCTGGAAGAGGAGTCACACTGTaGCAAGATCTTGTTCAGGCTGCGGCTAGATGCAAA +
Preference number: 6 (lower is better)
Translates to: DLLVLSGRGVTL*QDLVQAAARCK
Trigger: TTTGCATCTAGCCGCAGCCTGAACAAGATCTTGGCACAGTGTGACTCCTCTTCCAGAGAGTACGAGGAGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167173.2
CDS CCA 72 bp AGGCCTGATGGATCTCTTGCCAACCATTCTCATCAGTaGTCCCCAGCTGTGCATGATCATGGAGAAGCAGCT +
Preference number: 6 (lower is better)
Translates to: RPDGSLANHSHQ*SPAVHDHGEAA
Trigger: AGCTGCTTCTCCATGATCATGCACAGCTGGGGACCACTGATGAGAATGGTTGGCAAGAGATCCATCAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CCA 72 bp GGGGTTTCCCTGAATGGTACGACATCGGAGTCTTTGTaGGTCTTGATTACCTCGGCAAGCTCAAAGTTCCCT +
Preference number: 6 (lower is better)
Translates to: GVSLNGTTSESL*VLITSASSKFP
Trigger: AGGGAACTTTGAGCTTGCCGAGGTAATCAAGACCCACAAAGACTCCGATGTCGTACCATTCAGGGAAACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS CAA 72 bp CTGGGGGTTTCCCTGAATGGTACGACATCGGAGTCTTaGTGGGTCTTGATTACCTCGGCAAGCTCAAAGTTC +
Preference number: 6 (lower is better)
Translates to: LGVSLNGTTSES*WVLITSASSKF
Trigger: GAACTTTGAGCTTGCCGAGGTAATCAAGACCCACAAAGACTCCGATGTCGTACCATTCAGGGAAACCCCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS GCA 72 bp CACACCTTCCACATCTACAGACTCAAGGTATTGGAGTaGAGGGAAGGCAGGTGTGGGTGTAAACTCCTCAAT +
Preference number: 6 (lower is better)
Translates to: HTFHIYRLKVLE*REGRCGCKLLN
Trigger: ATTGAGGAGTTTACACCCACACCTGCCTTCCCTGCACTCCAATACCTTGAGTCTGTAGATGTGGAAGGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109309.9
ENSMUST00000229559.2
ENSMUST00000230807.2
CDS CAA 72 bp TCCCTGAATGGTACGACATCGGAGTCTTTGTGGGTCTaGATTACCTCGGCAAGCTCAAAGTTCCCTGCAATA +
Preference number: 6 (lower is better)
Translates to: SLNGTTSESLWV*ITSASSKFPAI
Trigger: TATTGCAGGGAACTTTGAGCTTGCCGAGGTAATCAAGACCCACAAAGACTCCGATGTCGTACCATTCAGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9
CDS TCA 72 bp CCACCTTATCTGTGCTGTGTAGCTGGACATAGTCCATaGACTTCTTCAGGTTTGCCTTTGTGTGTAGCTTTG +
Preference number: 6 (lower is better)
Translates to: PPYLCCVAGHSP*TSSGLPLCVAL
Trigger: CAAAGCTACACACAAAGGCAAACCTGAAGAAGTTCATGGACTATGTCCAGCTACACAGCACAGATAAGGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109309.9