Pregenerated sensors for SH3YL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020669Ensembl transcript IDs: ENSMUST00000020997.15, ENSMUST00000110880.3
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTaGTTGACGTTTGCAGTAAACAGTGAATCCTGTCTG | + |
|
Preference number: 3 (lower is better) Translates to: LHLDKNICRARV*LTFAVNSESCL Trigger: CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGATTCAGCTGTACAGGTaGGTGGGCTGGCTGGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLIQLYR*VGWLGP Trigger: AGGCCCCAGCCAGCCCACCCACCTGTACAGCTGAAT...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR TCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGTGGACTTGCAGTATGTaGAGACGGCTGCGGAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLWTCSM*RRLRSS Trigger: GGAGCTCCGCAGCCGTCTTCACATACTGCAAGTCCA...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR TCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGAGCTATCCCAATGGCTaGAGGTGCAGACCATTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLSYPNG*RCRPFR Trigger: CCTGAATGGTCTGCACCTTCAGCCATTGGGATAGCT...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGGCCCAGCTATCCCAATaGCTGAAGGTGCAGACCATT | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLAQLSQ*LKVQTI Trigger: AATGGTCTGCACCTTCAGCCATTGGGATAGCTGGGC...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGTTGGAGGTAATTCTTTaGCCTTCCTCTGCTCCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLLEVIL*PSSAPG Trigger: CCCGGGAGCAGAGGAAGGCCAAAGAATTACCTCCAA...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR TCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGTCACGTGGGCAGGAATaGTCTTATCAGGTCCATTTC | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLSRGQE*SYQVHF Trigger: GAAATGGACCTGATAAGATCATTCCTGCCCACGTGA...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020997.15 |
||
| CDS-3UTR GCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGCAGGTTTCCACCCTTTaGAAAGGCTTCTACTGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLQVSTL*KGFYCS Trigger: AGAGCAGTAGAAGCCTTTGCAAAGGGTGGAAACCTG...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR GCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTGTATGTGAAGACGGCTaGGGAGCTCCTCAGGGACAC | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFVCEDG*GAPQGH Trigger: GTGTCCCTGAGGAGCTCCGCAGCCGTCTTCACATAC...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR GCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGTTCATAAAGATCTTCTaGTTGAGCAGGCTGCGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLFIKIF*LSRLRN Trigger: GTTCCGCAGCCTGCTCAAGCAGAAGATCTTTATGAA...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTGGTGGGTGGGCTGGCTaGGGCCTTGAAGATGGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFGGWAG*GLEDGF Trigger: AAAACCATCTTCAAGGCCCCAGCCAGCCCACCCACC...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR GCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTTCCTCAGGGACACGTTaGCTTCCAGGTTCCTGCCTA | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFSSGTR*LPGSCL Trigger: TAGGCAGGAACCTGGAAGGCAACGTGTCCCTGAGGA...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTTTGGAGGTAATTCTTTaGCCTTCCTCTGCTCCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFLEVIL*PSSAPG Trigger: CCCGGGAGCAGAGGAAGGCCAAAGAATTACCTCCAA...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGAAAATTCAAGTCTCCTaGCTGTTGTCCTTCGAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLKIQVS*LLSFER Trigger: TCTTTCGAAGGACAACAGCCAGGAGACTTGAATTTT...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGAGTTACATAGTTGGCTaGGAAAATTCCAGTTTGACC | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLSYIVG*ENSSLT Trigger: GGTCAAACTGGAATTTTCCCAGCCAACTATGTAACT...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR TCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTAGCTATCCCAATGGCTaGAGGTGCAGACCATTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFSYPNG*RCRPFS Trigger: GGAAAATGGTCTGCACCTTCAGCCATTGGGATAGCT...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020997.15 |
||
| CDS-3UTR GCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGTGCAAAGGCTTCTACTaGTCTGTCATAATTCAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLCKGFY*SVIIQN Trigger: ATTCTGAATTATGACAGAGCAGTAGAAGCCTTTGCA...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR GCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGTTCAAATTGATGCGCTaGCCTTCAGTTTCATATTTC | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLFKLMR*PSVSYF Trigger: GAAATATGAAACTGAAGGGCAGCGCATCAATTTGAA...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR GCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGTATGATTCTGTCTCCTaGTTGAAAATTCAAGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLYDSVS*LKIQVS Trigger: GGAGACTTGAATTTTCAAGCAGGAGACAGAATCATA...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGTGCTGTCACTTCTATTaGTTGATTCAAATTGCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLCCHFY*LIQIAS Trigger: ACTGGCAATTTGAATCAACCAATAGAAGTGACAGCA...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR GCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTCAGGTTTCCACCCTTTaGAAAGGCTTCTACTGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFQVSTL*KGFYCS Trigger: AGAGCAGTAGAAGCCTTTGCAAAGGGTGGAAACCTG...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR GCA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGTTGGTTGATTCAAATTaGCAGTTTTCTCATGATAGC | + |
|
Preference number: 4 (lower is better) Translates to: ICRARVCLTFAVNSESCLLVDSN*QFSHDS Trigger: GCTATCATGAGAAAACTGGCAATTTGAATCAACCAA...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR TCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTATTCTGTCTCCTGCTTaGAAATTCAAGTCTCCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFILSPA*KFKSPG Trigger: GCCAGGAGACTTGAATTTTCAAGCAGGAGACAGAAT...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR TCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTGGGAAAATTCCAGTTTaGCCTCGAAGTTTTCCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFGKIPV*PRSFPS Trigger: GGAAGGAAAACTTCGAGGTCAAACTGGAATTTTCCC...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTTCATTTCTATTACCCTaGGAGCCAGCATTCAGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFSFLLP*EPAFSC Trigger: ACAGCTGAATGCTGGCTCCCAGGGTAATAGAAATGA...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR TCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTCAGACCATTCAGGAATaGTCTTATCAGGTCCATTTC | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFQTIQE*SYQVHF Trigger: GAAATGGACCTGATAAGATCATTCCTGAATGGTCTG...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTAAAATTCAAGTCTCCTaGCTGTTGTCCTTCGAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFKIQVS*LLSFER Trigger: TCTTTCGAAGGACAACAGCCAGGAGACTTGAATTTT...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTAGTTACATAGTTGGCTaGGAAAATTCCAGTTTGACC | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFSYIVG*ENSSLT Trigger: GGTCAAACTGGAATTTTCCCAGCCAACTATGTAACT...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR TCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTGTCACTTCTATTGGTTaGTTCAAATTGCCAGTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFVTSIG*FKLPVF Trigger: GAAAACTGGCAATTTGAATCAACCAATAGAAGTGAC...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR GCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTTTCAAATTGATGCGCTaGCCTTCAGTTTCATATTTC | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFFKLMR*PSVSYF Trigger: GAAATATGAAACTGAAGGGCAGCGCATCAATTTGAA...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR GCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTTATGATTCTGTCTCCTaGTTGAAAATTCAAGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFYDSVS*LKIQVS Trigger: GGAGACTTGAATTTTCAAGCAGGAGACAGAATCATA...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CCA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTTGCTGTCACTTCTATTaGTTGATTCAAATTGCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: NILHLDKNICRARVCLTFCCHFY*LIQIAS Trigger: ACTGGCAATTTGAATCAACCAATAGAAGTGACAGCA...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS TCA 90 bp | CTTCCAGGGAGATACCAGCAAAGAGGCCCCTGGACTTGCAGTATGTaGAGACGGCTGCGGAGCTCCTCAGGGACACGTTGCCTTCCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: LPGRYQQRGPWTCSM*RRLRSSSGTRCLPG Trigger: ACCTGGAAGGCAACGTGTCCCTGAGGAGCTCCGCAGCCGTCTTCACATACTGCAAGTCCAGGGGCCTCTTTGCTGGTATCTCCCTGGAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CCA 90 bp | TTACCCTGGGAGCCAGCATTCAGCTGTACAGGTGGGTGGGCTGGCTaGGGCCTTGAAGATGGTTTTGGAGGTAATTCTTTGGCCTTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: LPWEPAFSCTGGWAG*GLEDGFGGNSLAFL Trigger: GAGGAAGGCCAAAGAATTACCTCCAAAACCATCTTCAAGGCCCCAGCCAGCCCACCCACCTGTACAGCTGAATGCTGGCTCCCAGGGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CAA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGCTCCTCAGGGACACGTaGCCTTCCAGGTTCCTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: ICRARVCLTFAVNSESCLLLRDT*PSRFLP Trigger: AGGCAGGAACCTGGAAGGCAACGTGTCCCTGAGGAG...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CCA 90 bp | TCATTTCTATTACCCTGGGAGCCAGCATTCAGCTGTACAGGTGGGTaGGCTGGCTGGGGCCTTGAAGATGGTTTTGGAGGTAATTCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: SFLLPWEPAFSCTGG*AGWGLEDGFGGNSL Trigger: CAAAGAATTACCTCCAAAACCATCTTCAAGGCCCCAGCCAGCCCACCCACCTGTACAGCTGAATGCTGGCTCCCAGGGTAATAGAAATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CAA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGGGGCTGGCTGGGGCCTaGAAGATGGTTTTGGAGGTA | + |
|
Preference number: 5 (lower is better) Translates to: ICRARVCLTFAVNSESCLGLAGA*KMVLEV Trigger: TACCTCCAAAACCATCTTCAAGGCCCCAGCCAGCCC...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS TCA 90 bp | TATTCCTATTTCAAATCCTCCACCAAGCCCAGCTATCCCAATGGCTaGAGGTGCAGACCATTTTCCATCCGGAAGACGCGCCAGGACAAT | + |
|
Preference number: 5 (lower is better) Translates to: YSYFKSSTKPSYPNG*RCRPFSIRKTRQDN Trigger: ATTGTCCTGGCGCGTCTTCCGGATGGAAAATGGTCTGCACCTTCAGCCATTGGGATAGCTGGGCTTGGTGGAGGATTTGAAATAGGAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020997.15 |
||
| CDS GCA 90 bp | TGGGGCCTTGAAGATGGTTTTGGAGGTAATTCTTTGGCCTTCCTCTaGTCCCGGGCTACTTTCTTCAAATTGATGCGCTGCCCTTCAGTT | + |
|
Preference number: 5 (lower is better) Translates to: WGLEDGFGGNSLAFL*SRATFFKLMRCPSV Trigger: AACTGAAGGGCAGCGCATCAATTTGAAGAAAGTAGCCCGGGAGCAGAGGAAGGCCAAAGAATTACCTCCAAAACCATCTTCAAGGCCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CAA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGAAGAGGCCCCTGGACTaGCAGTATGTGAAGACGGCT | + |
|
Preference number: 5 (lower is better) Translates to: ICRARVCLTFAVNSESCLKRPLD*QYVKTA Trigger: AGCCGTCTTCACATACTGCAAGTCCAGGGGCCTCTT...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CAA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGATAAAGATCTTCTGCTaGAGCAGGCTGCGGAACATC | + |
|
Preference number: 5 (lower is better) Translates to: ICRARVCLTFAVNSESCLIKIFC*SRLRNI Trigger: GATGTTCCGCAGCCTGCTCAAGCAGAAGATCTTTAT...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CAA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTGGGCTGGCTGGGGCCTaGAAGATGGTTTTGGAGGTA | + |
|
Preference number: 5 (lower is better) Translates to: NILHLDKNICRARVCLTFGLAGA*KMVLEV Trigger: TACCTCCAAAACCATCTTCAAGGCCCCAGCCAGCCC...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CAA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTAAGAGGCCCCTGGACTaGCAGTATGTGAAGACGGCT | + |
|
Preference number: 5 (lower is better) Translates to: NILHLDKNICRARVCLTFKRPLD*QYVKTA Trigger: AGCCGTCTTCACATACTGCAAGTCCAGGGGCCTCTT...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CAA 90 bp | ATTTGCAGAGCAAGGGTGTGCTTGACGTTTGCAGTAAACAGTGAATCCTGTCTGTGGGAAAATTCCAGTTaGACCTCGAAGTTTTCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: ICRARVCLTFAVNSESCLWENSS*TSKFSF Trigger: GAAGGAAAACTTCGAGGTCAAACTGGAATTTTCCCA...CAGACAGGATTCACTGTTTACTGCAAACGTCAAGCACACCCTTGCTCTGCAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS GCA 90 bp | ATTCCCTCCAAGGGTCAGGTTTCCACCCTTTGCAAAGGCTTCTACTaGTCTGTCATAATTCAGAATTATCACCAAATCGGATACCTCTAT | + |
|
Preference number: 5 (lower is better) Translates to: IPSKGQVSTLCKGFY*SVIIQNYHQIGYLY Trigger: ATAGAGGTATCCGATTTGGTGATAATTCTGAATTATGACAGAGCAGTAGAAGCCTTTGCAAAGGGTGGAAACCTGACCCTTGGAGGGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS GCA 90 bp | AACTGCGACAGTAAAATTCCCTCCAAGGGTCAGGTTTCCACCCTTTaGAAAGGCTTCTACTGCTCTGTCATAATTCAGAATTATCACCAA | + |
|
Preference number: 5 (lower is better) Translates to: NCDSKIPSKGQVSTL*KGFYCSVIIQNYHQ Trigger: TTGGTGATAATTCTGAATTATGACAGAGCAGTAGAAGCCTTTGCAAAGGGTGGAAACCTGACCCTTGGAGGGAATTTTACTGTCGCAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CCA 90 bp | ATAAAATGTCGTAAGCTCGAATGTCCTGACAGTAAAATTTCCGATTaGTTTCTTTCCTCTCAATCAGACAGCTTCCTTCCAGGGAGATAC | + |
|
Preference number: 5 (lower is better) Translates to: IKCRKLECPDSKISD*FLSSQSDSFLPGRY Trigger: GTATCTCCCTGGAAGGAAGCTGTCTGATTGAGAGGAAAGAAACCAATCGGAAATTTTACTGTCAGGACATTCGAGCTTACGACATTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS-3UTR CAA 90 bp | AATATTTTACACCTGGATAAAAACATTTGCAGAGCAAGGGTGTGCTTGACGTTTATAAAGATCTTCTGCTaGAGCAGGCTGCGGAACATC | + |
|
Preference number: 5 (lower is better) Translates to: NILHLDKNICRARVCLTFIKIFC*SRLRNI Trigger: GATGTTCCGCAGCCTGCTCAAGCAGAAGATCTTTAT...AAACGTCAAGCACACCCTTGCTCTGCAAATGTTTTTATCCAGGTGTAAAATATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CCA 90 bp | TTAATCACAGACAAAACTGCAAGACCTTTAGCTTTTGCAATCACGTaGGCAGGAATGATCTTATCAGGTCCATTTCTAGAAGTTATTTCT | + |
|
Preference number: 5 (lower is better) Translates to: LITDKTARPLAFAIT*AGMILSGPFLEVIS Trigger: AGAAATAACTTCTAGAAATGGACCTGATAAGATCATTCCTGCCCACGTGATTGCAAAAGCTAAAGGTCTTGCAGTTTTGTCTGTGATTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020997.15 |
||
| CDS TCA 90 bp | AAATTTGAGTCGGTCTTTGATATAACTATGATTCTGTCTCCTGCTTaGAAATTCAAGTCTCCTGGCTGTTGTCCTTCGAAAGAGTATAAT | + |
|
Preference number: 5 (lower is better) Translates to: KFESVFDITMILSPA*KFKSPGCCPSKEYN Trigger: ATTATACTCTTTCGAAGGACAACAGCCAGGAGACTTGAATTTTCAAGCAGGAGACAGAATCATAGTTATATCAAAGACCGACTCAAATTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CAA 72 bp | TATGTGAAGACGGCTGCGGAGCTCCTCAGGGACACGTaGCCTTCCAGGTTCCTGCCTAGGGGCCCAACTGCG | + |
|
Preference number: 6 (lower is better) Translates to: YVKTAAELLRDT*PSRFLPRGPTA Trigger: CGCAGTTGGGCCCCTAGGCAGGAACCTGGAAGGCAACGTGTCCCTGAGGAGCTCCGCAGCCGTCTTCACATA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CAA 90 bp | GACTTGCAGTATGTGAAGACGGCTGCGGAGCTCCTCAGGGACACGTaGCCTTCCAGGTTCCTGCCTAGGGGCCCAACTGCGACAGTAAAA | + |
|
Preference number: 6 (lower is better) Translates to: DLQYVKTAAELLRDT*PSRFLPRGPTATVK Trigger: TTTTACTGTCGCAGTTGGGCCCCTAGGCAGGAACCTGGAAGGCAACGTGTCCCTGAGGAGCTCCGCAGCCGTCTTCACATACTGCAAGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CAA 90 bp | GGGAGCCAGCATTCAGCTGTACAGGTGGGTGGGCTGGCTGGGGCCTaGAAGATGGTTTTGGAGGTAATTCTTTGGCCTTCCTCTGCTCCC | + |
|
Preference number: 6 (lower is better) Translates to: GSQHSAVQVGGLAGA*KMVLEVILWPSSAP Trigger: GGGAGCAGAGGAAGGCCAAAGAATTACCTCCAAAACCATCTTCAAGGCCCCAGCCAGCCCACCCACCTGTACAGCTGAATGCTGGCTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS TCA 72 bp | AGATACCAGCAAAGAGGCCCCTGGACTTGCAGTATGTaGAGACGGCTGCGGAGCTCCTCAGGGACACGTTGC | + |
|
Preference number: 6 (lower is better) Translates to: RYQQRGPWTCSM*RRLRSSSGTRC Trigger: GCAACGTGTCCCTGAGGAGCTCCGCAGCCGTCTTCACATACTGCAAGTCCAGGGGCCTCTTTGCTGGTATCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS GCA 72 bp | AAAGAGGCCCCTGGACTTGCAGTATGTGAAGACGGCTaGGGAGCTCCTCAGGGACACGTTGCCTTCCAGGTT | + |
|
Preference number: 6 (lower is better) Translates to: KEAPGLAVCEDG*GAPQGHVAFQV Trigger: AACCTGGAAGGCAACGTGTCCCTGAGGAGCTCCGCAGCCGTCTTCACATACTGCAAGTCCAGGGGCCTCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CAA 90 bp | TCAGCTGTACAGGTGGGTGGGCTGGCTGGGGCCTTGAAGATGGTTTaGGAGGTAATTCTTTGGCCTTCCTCTGCTCCCGGGCTACTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: SAVQVGGLAGALKMV*EVILWPSSAPGLLS Trigger: AGAAAGTAGCCCGGGAGCAGAGGAAGGCCAAAGAATTACCTCCAAAACCATCTTCAAGGCCCCAGCCAGCCCACCCACCTGTACAGCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CAA 90 bp | GGGTGGGCTGGCTGGGGCCTTGAAGATGGTTTTGGAGGTAATTCTTaGGCCTTCCTCTGCTCCCGGGCTACTTTCTTCAAATTGATGCGC | + |
|
Preference number: 6 (lower is better) Translates to: GWAGWGLEDGFGGNS*AFLCSRATFFKLMR Trigger: GCGCATCAATTTGAAGAAAGTAGCCCGGGAGCAGAGGAAGGCCAAAGAATTACCTCCAAAACCATCTTCAAGGCCCCAGCCAGCCCACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS TCA 72 bp | TTCAAATCCTCCACCAAGCCCAGCTATCCCAATGGCTaGAGGTGCAGACCATTTTCCATCCGGAAGACGCGC | + |
|
Preference number: 6 (lower is better) Translates to: FKSSTKPSYPNG*RCRPFSIRKTR Trigger: GCGCGTCTTCCGGATGGAAAATGGTCTGCACCTTCAGCCATTGGGATAGCTGGGCTTGGTGGAGGATTTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020997.15 |
||
| CDS CCA 72 bp | GAGCCAGCATTCAGCTGTACAGGTGGGTGGGCTGGCTaGGGCCTTGAAGATGGTTTTGGAGGTAATTCTTTG | + |
|
Preference number: 6 (lower is better) Translates to: EPAFSCTGGWAG*GLEDGFGGNSL Trigger: CAAAGAATTACCTCCAAAACCATCTTCAAGGCCCCAGCCAGCCCACCCACCTGTACAGCTGAATGCTGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CAA 72 bp | GGCTGGGGCCTTGAAGATGGTTTTGGAGGTAATTCTTaGGCCTTCCTCTGCTCCCGGGCTACTTTCTTCAAA | + |
|
Preference number: 6 (lower is better) Translates to: GWGLEDGFGGNS*AFLCSRATFFK Trigger: TTTGAAGAAAGTAGCCCGGGAGCAGAGGAAGGCCAAAGAATTACCTCCAAAACCATCTTCAAGGCCCCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CCA 72 bp | CTATTTCAAATCCTCCACCAAGCCCAGCTATCCCAATaGCTGAAGGTGCAGACCATTTTCCATCCGGAAGAC | + |
|
Preference number: 6 (lower is better) Translates to: LFQILHQAQLSQ*LKVQTIFHPED Trigger: GTCTTCCGGATGGAAAATGGTCTGCACCTTCAGCCATTGGGATAGCTGGGCTTGGTGGAGGATTTGAAATAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020997.15 |
||
| CDS CCA 72 bp | GCTGGGGCCTTGAAGATGGTTTTGGAGGTAATTCTTTaGCCTTCCTCTGCTCCCGGGCTACTTTCTTCAAAT | + |
|
Preference number: 6 (lower is better) Translates to: AGALKMVLEVIL*PSSAPGLLSSN Trigger: ATTTGAAGAAAGTAGCCCGGGAGCAGAGGAAGGCCAAAGAATTACCTCCAAAACCATCTTCAAGGCCCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS TCA 72 bp | TTCAAATCCTCCACCAAGCCCAGCTATCCCAATGGCTaGAGGTGCAGACCATTCAGGAATGATCTTATCAGG | + |
|
Preference number: 6 (lower is better) Translates to: FKSSTKPSYPNG*RCRPFRNDLIR Trigger: CCTGATAAGATCATTCCTGAATGGTCTGCACCTTCAGCCATTGGGATAGCTGGGCTTGGTGGAGGATTTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110880.3 |
||
| CDS GCA 72 bp | GAAGATGGTTTTGGAGGTAATTCTTTGGCCTTCCTCTaGTCCCGGGCTACTTTCTTCAAATTGATGCGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: EDGFGGNSLAFL*SRATFFKLMRC Trigger: GCAGCGCATCAATTTGAAGAAAGTAGCCCGGGAGCAGAGGAAGGCCAAAGAATTACCTCCAAAACCATCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CAA 72 bp | TTGGCCTTCCTCTGCTCCCGGGCTACTTTCTTCAAATaGATGCGCTGCCCTTCAGTTTCATATTTCTCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: LAFLCSRATFFK*MRCPSVSYFSV Trigger: CACTGAGAAATATGAAACTGAAGGGCAGCGCATCAATTTGAAGAAAGTAGCCCGGGAGCAGAGGAAGGCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS GCA 72 bp | AAGGGTCAGGTTTCCACCCTTTGCAAAGGCTTCTACTaGTCTGTCATAATTCAGAATTATCACCAAATCGGA | + |
|
Preference number: 6 (lower is better) Translates to: KGQVSTLCKGFY*SVIIQNYHQIG Trigger: TCCGATTTGGTGATAATTCTGAATTATGACAGAGCAGTAGAAGCCTTTGCAAAGGGTGGAAACCTGACCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS GCA 72 bp | AGTAAAATTCCCTCCAAGGGTCAGGTTTCCACCCTTTaGAAAGGCTTCTACTGCTCTGTCATAATTCAGAAT | + |
|
Preference number: 6 (lower is better) Translates to: SKIPSKGQVSTL*KGFYCSVIIQN Trigger: ATTCTGAATTATGACAGAGCAGTAGAAGCCTTTGCAAAGGGTGGAAACCTGACCCTTGGAGGGAATTTTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS CCA 72 bp | CGTAAGCTCGAATGTCCTGACAGTAAAATTTCCGATTaGTTTCTTTCCTCTCAATCAGACAGCTTCCTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: RKLECPDSKISD*FLSSQSDSFLP Trigger: TGGAAGGAAGCTGTCTGATTGAGAGGAAAGAAACCAATCGGAAATTTTACTGTCAGGACATTCGAGCTTACG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020997.15 ENSMUST00000110880.3 |
||
| CDS GCA 72 bp | TTTAATCACAGACAAAACTGCAAGACCTTTAGCTTTTaGAATCACGTGGGCAGGAATGATCTTATCAGGTCC | + |
|
Preference number: 6 (lower is better) Translates to: FNHRQNCKTFSF*NHVGRNDLIRS Trigger: GGACCTGATAAGATCATTCCTGCCCACGTGATTGCAAAAGCTAAAGGTCTTGCAGTTTTGTCTGTGATTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020997.15 |
||
| CDS CCA 72 bp | GACAAAACTGCAAGACCTTTAGCTTTTGCAATCACGTaGGCAGGAATGATCTTATCAGGTCCATTTCTAGAA | + |
|
Preference number: 6 (lower is better) Translates to: DKTARPLAFAIT*AGMILSGPFLE Trigger: TTCTAGAAATGGACCTGATAAGATCATTCCTGCCCACGTGATTGCAAAAGCTAAAGGTCTTGCAGTTTTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020997.15 |
||