RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SH3RF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057719

Ensembl transcript IDs: ENSMUST00000072008.11, ENSMUST00000074679.4

Found 336 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTTAGATCGTGGCCCTGGTTTGCAGAGCTGTCTGGTTCGCAGAGCTaGCTCCCACCTCTCCCTCACCCTGTTCACAAGGCACCCTGGCTG +
Preference number: 1 (lower is better)
Translates to: LRSWPWFAELSGSQS*LPPLPHPVHKAPWL
Trigger: CAGCCAGGGTGCCTTGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGACAGCTCTGCAAACCAGGGCCACGATCTAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 90 bp GCTGCCTCCCACCTCTCCCTCACCCTGTTCACAAGGCACCCTGGCTaGACCTGCTCCTTCCAGCCCATCTGGATGGAGTCATCTAGTTTT +
Preference number: 1 (lower is better)
Translates to: AASHLSLTLFTRHPG*TCSFQPIWMESSSF
Trigger: AAAACTAGATGACTCCATCCAGATGGGCTGGAAGGAGCAGGTCCAGCCAGGGTGCCTTGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 90 bp TGGCCTTCTTTGCATTGGGAGCCAAAGCTGTGCTATGTTGCCTTCTaGCAACTGGGACTCATTCACTGTTCTGAAGTCCCGGGAGGTCTT +
Preference number: 1 (lower is better)
Translates to: WPSLHWEPKLCYVAF*QLGLIHCSEVPGGL
Trigger: AAGACCTCCCGGGACTTCAGAACAGTGAATGAGTCCCAGTTGCCAGAAGGCAACATAGCACAGCTTTGGCTCCCAATGCAAAGAAGGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR GCA 90 bp CTGTCCACTTTCTTTGGTAACAGTTCTCTAAGAAGCACCCTCCTCTaGCCTCCCCTCCATTGTCCCATAAGGGAAACTAGTTCCCTTCCC +
Preference number: 1 (lower is better)
Translates to: LSTFFGNSSLRSTLL*PPLHCPIRETSSLP
Trigger: GGGAAGGGAACTAGTTTCCCTTATGGGACAATGGAGGGGAGGGCAGAGGAGGGTGCTTCTTAGAGAACTGTTACCAAAGAAAGTGGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 90 bp CTTTGCATTGGGAGCCAAAGCTGTGCTATGTTGCCTTCTGGCAACTaGGACTCATTCACTGTTCTGAAGTCCCGGGAGGTCTTTCTTCTG +
Preference number: 1 (lower is better)
Translates to: LCIGSQSCAMLPSGN*DSFTVLKSREVFLL
Trigger: CAGAAGAAAGACCTCCCGGGACTTCAGAACAGTGAATGAGTCCCAGTTGCCAGAAGGCAACATAGCACAGCTTTGGCTCCCAATGCAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR GCA 90 bp AGAAATAAGGACCTGAACTATCCAGCAGAGCCTACTGGCCTTCTTTaGATTGGGAGCCAAAGCTGTGCTATGTTGCCTTCTGGCAACTGG +
Preference number: 1 (lower is better)
Translates to: RNKDLNYPAEPTGLL*IGSQSCAMLPSGNW
Trigger: CCAGTTGCCAGAAGGCAACATAGCACAGCTTTGGCTCCCAATGCAAAGAAGGCCAGTAGGCTCTGCTGGATAGTTCAGGTCCTTATTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR TCA 90 bp AAGGCAGGCAGATCTCTAAGTTCAAGACCAGCCTCGTCTACAGAGTaGGTTCTAGGACAGTCAGGGCTAAAAAGAAAGAGAAGGCCAACC +
Preference number: 1 (lower is better)
Translates to: KAGRSLSSRPASSTE*VLGQSGLKRKRRPT
Trigger: GGTTGGCCTTCTCTTTCTTTTTAGCCCTGACTGTCCTAGAACTCACTCTGTAGACGAGGCTGGTCTTGAACTTAGAGATCTGCCTGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 90 bp CTCTACAAGATACAGGATGCTCTGGGAAGCATTCAGTTCTGGGAATaGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTA +
Preference number: 1 (lower is better)
Translates to: LYKIQDALGSIQFWE*MEGLVLWRWPSLEL
Trigger: TAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTCCCAGAACTGAATGCTTCCCAGAGCATCCTGTATCTTGTAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 90 bp ACAAAGCTCTACAAGATACAGGATGCTCTGGGAAGCATTCAGTTCTaGGAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTG +
Preference number: 1 (lower is better)
Translates to: TKLYKIQDALGSIQF*EWMEGLVLWRWPSL
Trigger: CAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTCCCAGAACTGAATGCTTCCCAGAGCATCCTGTATCTTGTAGAGCTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 90 bp GCTTGCCTCAGCCAGTTTGTGGCCAGTTTTAAGCTTCCGTTTCCTTaGCTCTCTAATGGGAACAGTCATAGTTGCCCTACACAGTTTTGC +
Preference number: 1 (lower is better)
Translates to: ACLSQFVASFKLPFP*LSNGNSHSCPTQFC
Trigger: GCAAAACTGTGTAGGGCAACTATGACTGTTCCCATTAGAGAGCCAAGGAAACGGAAGCTTAAAACTGGCCACAAACTGGCTGAGGCAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR CCA 90 bp AGCAGTGGGGTTGGCCGTAGTAAACCACTAAGTTTAGAAACATGCTaGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAGGCA +
Preference number: 1 (lower is better)
Translates to: SSGVGRSKPLSLETC*LVVLHAFNPSTREA
Trigger: TGCCTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAAACTTAGTGGTTTACTACGGCCAACCCCACTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 90 bp ATCCCGTTCAAGCACTCACAAAGCTCTACAAGATACAGGATGCTCTaGGAAGCATTCAGTTCTGGGAATGGATGGAAGGTTTGGTGCTAT +
Preference number: 1 (lower is better)
Translates to: IPFKHSQSSTRYRML*EAFSSGNGWKVWCY
Trigger: ATAGCACCAAACCTTCCATCCATTCCCAGAACTGAATGCTTCCCAGAGCATCCTGTATCTTGTAGAGCTTTGTGAGTGCTTGAACGGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR TCA 90 bp TATATGGGAAGAATCGGGCCAAGAAGCTTAATGCATGATCATCTTTaGGCATTTGGTAGTCAGCATCAGGCTCTCTGGCTTTGGAGTCAG +
Preference number: 1 (lower is better)
Translates to: YMGRIGPRSLMHDHL*AFGSQHQALWLWSQ
Trigger: CTGACTCCAAAGCCAGAGAGCCTGATGCTGACTACCAAATGCTCAAAGATGATCATGCATTAAGCTTCTTGGCCCGATTCTTCCCATATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR TCA 90 bp ATCTTAATGGCTGTCCTGACTTCAAGAAGGCAGAGATGTGCATGCTaGTTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAG +
Preference number: 1 (lower is better)
Translates to: ILMAVLTSRRQRCAC*FHGIHMNHYLTQAQ
Trigger: CTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAATCAGCATGCACATCTCTGCCTTCTTGAAGTCAGGACAGCCATTAAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR GCA 90 bp TTAAGCAGTGGGGTTGGCCGTAGTAAACCACTAAGTTTAGAAACATaGTGGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAG +
Preference number: 1 (lower is better)
Translates to: LSSGVGRSKPLSLET*WLVVLHAFNPSTRE
Trigger: CTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAAACTTAGTGGTTTACTACGGCCAACCCCACTGCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 90 bp TGTCTGGAAAAGCCTACAGATAATTCCGTTTGCCAAGTGTGTGGGTaGGTAAGAGATGTATGTTCACAATCCAGAGACCTGCAAGAACTG +
Preference number: 1 (lower is better)
Translates to: CLEKPTDNSVCQVCG*VRDVCSQSRDLQEL
Trigger: CAGTTCTTGCAGGTCTCTGGATTGTGAACATACATCTCTTACCCACCCACACACTTGGCAAACGGAATTATCTGTAGGCTTTTCCAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR GCA 90 bp CTTCTCCATCTTAATGGCTGTCCTGACTTCAAGAAGGCAGAGATGTaGATGCTGATTTCATGGCATACACATGAACCACTATCTCACACA +
Preference number: 1 (lower is better)
Translates to: LLHLNGCPDFKKAEM*MLISWHTHEPLSHT
Trigger: TGTGTGAGATAGTGGTTCATGTGTATGCCATGAAATCAGCATGCACATCTCTGCCTTCTTGAAGTCAGGACAGCCATTAAGATGGAGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 90 bp GCTTTGGAGTCAGCAAACTCAGAAAGTCACTCTCTTCCGTTTCAGTaGGTTCTCAGAATGTTCAAAATGGACCATCTCATATCCTTCCCT +
Preference number: 1 (lower is better)
Translates to: ALESANSESHSLPFQ*VLRMFKMDHLISFP
Trigger: AGGGAAGGATATGAGATGGTCCATTTTGAACATTCTGAGAACCCACTGAAACGGAAGAGAGTGACTTTCTGAGTTTGCTGACTCCAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 90 bp TCTGGGAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTaGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCATAGGCAT +
Preference number: 1 (lower is better)
Translates to: SGNGWKVWCYGGGHP*NYAYFFGRLSFHRH
Trigger: ATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTCCCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR TCA 90 bp ACAAAGATGTTCTATATTGAGCGCATAGGAAGAGAGGCAAAATCCTaGATCCTGGAGGCACAGGTATGGATGCTTTTCTTATTCTTTGGC +
Preference number: 1 (lower is better)
Translates to: TKMFYIERIGREAKS*ILEAQVWMLFLFFG
Trigger: GCCAAAGAATAAGAAAAGCATCCATACCTGTGCCTCCAGGATTCAGGATTTTGCCTCTCTTCCTATGCGCTCAATATAGAACATCTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR GCA 90 bp GTCTATAATACCATACACATCCTTTATCTGTCTCTCCGTGCTCCCTaGTTATCTACTGTGAAGAAATATATGGGAAGAATCGGGCCAAGA +
Preference number: 1 (lower is better)
Translates to: VYNTIHILYLSLRAP*LSTVKKYMGRIGPR
Trigger: TCTTGGCCCGATTCTTCCCATATATTTCTTCACAGTAGATAAGCAGGGAGCACGGAGAGACAGATAAAGGATGTGTATGGTATTATAGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR GCA 90 bp AATCCTCACAATAGTCCACTGAGACTGGTTCTGTTACCCTATTTATaGAAAGTGATACCTTCCTGGTTGAGTAAGATAGCCTTCCTAGAA +
Preference number: 1 (lower is better)
Translates to: NPHNSPLRLVLLPYL*KVIPSWLSKIAFLE
Trigger: TTCTAGGAAGGCTATCTTACTCAACCAGGAAGGTATCACTTTGCATAAATAGGGTAACAGAACCAGTCTCAGTGGACTATTGTGAGGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR-3UTR GCA 90 bp CAGAGCTGTCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACACCAACCTGGAATTCCTaGCTTCCCATTCCTGTGGAC +
Preference number: 2 (lower is better)
Translates to: QSCLVRRAASHLSLTLFTPTWNS*LPIPVD
Trigger: GTCCACAGGAATGGGAAGGCAGGAATTCCAGGTTGG...TGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGACAGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CAA 90 bp GAGCCTACTGGCCTTCTTTGCATTGGGAGCCAAAGCTGTGCTATGTaGCCTTCTGGCAACTGGGACTCATTCACTGTTCTGAAGTCCCGG +
Preference number: 2 (lower is better)
Translates to: EPTGLLCIGSQSCAM*PSGNWDSFTVLKSR
Trigger: CCGGGACTTCAGAACAGTGAATGAGTCCCAGTTGCCAGAAGGCAACATAGCACAGCTTTGGCTCCCAATGCAAAGAAGGCCAGTAGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR-3UTR GCA 90 bp CAGAGCTGTCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACAAGGCACAGGTATGGATaGTTTTCTTATTCTTTGGCT +
Preference number: 2 (lower is better)
Translates to: QSCLVRRAASHLSLTLFTRHRYG*FSYSLA
Trigger: AGCCAAAGAATAAGAAAAGCATCCATACCTGTGCCT...TGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGACAGCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR GCA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTCACCCTGGCTGGACCTaGTCCTTCCAGCCCATCTGG +
Preference number: 2 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLHPGWT*SFQPIW
Trigger: CCAGATGGGCTGGAAGGAGCAGGTCCAGCCAGGGTG...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp CAGAGCTGTCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACAAAGAAGCTTAATGCATaGTCATCTTTGAGCATTTGG +
Preference number: 2 (lower is better)
Translates to: QSCLVRRAASHLSLTLFTKKLNA*SSLSIW
Trigger: CCAAATGCTCAAAGATGATCATGCATTAAGCTTCTT...TGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGACAGCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp ACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGTCGTTTGCAGAGCTGTCTaGTTCGCAGAGCTGCCTCCC +
Preference number: 2 (lower is better)
Translates to: TIQRPARTACRKRLIRPVVCRAV*FAELPP
Trigger: GGGAGGCAGCTCTGCGAACCAGACAGCTCTGCAAAC...GACAGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp GTGAGTGTCTTACTTCTCCATCTTAATGGCTGTCCTGACTTCAAGAAGGCAGAGGTTTGCAGAGCTGTCTaGTTCGCAGAGCTGCCTCCC +
Preference number: 2 (lower is better)
Translates to: VSVLLLHLNGCPDFKKAEVCRAV*FAELPP
Trigger: GGGAGGCAGCTCTGCGAACCAGACAGCTCTGCAAAC...CTCTGCCTTCTTGAAGTCAGGACAGCCATTAAGATGGAGAAGTAAGACACTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR GCA 90 bp GTGAGTGTCTTACTTCTCCATCTTAATGGCTGTCCTGACTTCAAGAAGGCAGAGCCAACCTGGAATTCCTaGCTTCCCATTCCTGTGGAC +
Preference number: 2 (lower is better)
Translates to: VSVLLLHLNGCPDFKKAEPTWNS*LPIPVD
Trigger: GTCCACAGGAATGGGAAGGCAGGAATTCCAGGTTGG...CTCTGCCTTCTTGAAGTCAGGACAGCCATTAAGATGGAGAAGTAAGACACTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CAA 90 bp CAGGATGCTCTGGGAAGCATTCAGTTCTGGGAATGGATGGAAGGTTaGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTT +
Preference number: 2 (lower is better)
Translates to: QDALGSIQFWEWMEG*VLWRWPSLELCLFL
Trigger: AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTCCCAGAACTGAATGCTTCCCAGAGCATCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp ACGGCAGAATCTGGTCCTTTTCCCACCTTCTGTCAGTGTAAACATTGCTTCAACAGAGAGGCAAAATCCTaGATCCTGGAGGCACAGGTA +
Preference number: 2 (lower is better)
Translates to: TAESGPFPTFCQCKHCFNREAKS*ILEAQV
Trigger: TACCTGTGCCTCCAGGATTCAGGATTTTGCCTCTCT...GTTGAAGCAATGTTTACACTGACAGAAGGTGGGAAAAGGACCAGATTCTGCCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp ACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGTCAGGTCAAAGAGGCCCTaGGAGCAATTTCACTACTGC +
Preference number: 2 (lower is better)
Translates to: TIQRPARTACRKRLIRPVRSKRP*EQFHYC
Trigger: GCAGTAGTGAAATTGCTCTCAGGGCCTCTTTGACCT...GACAGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp GAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTGCAGCTGTTGTTGTaGCTCTGTGGAGTGAAGATG +
Preference number: 2 (lower is better)
Translates to: EWMEGLVLWRWPSLELCLLQLLL*LCGVKM
Trigger: CATCTTCACTCCACAGAGTCACAACAACAGCTGCAA...TAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CAA 90 bp AGTGGGGTTGGCCGTAGTAAACCACTAAGTTTAGAAACATGCTGGTaGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAGGCAAAG +
Preference number: 2 (lower is better)
Translates to: SGVGRSKPLSLETCW*VVLHAFNPSTREAK
Trigger: CTTTGCCTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAAACTTAGTGGTTTACTACGGCCAACCCCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACCTTAGATCGTGGCCCTaGTTTGCAGAGCTGTCTGGT +
Preference number: 2 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYLRSWP*FAELSG
Trigger: ACCAGACAGCTCTGCAAACCAGGGCCACGATCTAAG...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp GAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATGCCAAGTGTGTGGGTaGGTAAGAGATGTATGTTCA +
Preference number: 2 (lower is better)
Translates to: EWMEGLVLWRWPSLELCLCQVCG*VRDVCS
Trigger: TGAACATACATCTCTTACCCACCCACACACTTGGCA...TAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CAA 90 bp TTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTaGGGAGGTTATCATTTCATAGGCATGCCCCTCTGTTGTCCTCTA +
Preference number: 2 (lower is better)
Translates to: FGAMEVAILGTMLIS*GGYHFIGMPLCCPL
Trigger: TAGAGGACAACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp CTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGGGAGGTTATCATTAGAGAGGCAAAATCCTaGATCCTGGAGGCACAGGTA +
Preference number: 2 (lower is better)
Translates to: LWRWPSLELCLFLWEVIIREAKS*ILEAQV
Trigger: TACCTGTGCCTCCAGGATTCAGGATTTTGCCTCTCT...AATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACAGGTCAAAGAGGCCCTaGGAGCAATTTCACTACTGC +
Preference number: 2 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYRSKRP*EQFHYC
Trigger: GCAGTAGTGAAATTGCTCTCAGGGCCTCTTTGACCT...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTTGCAGCTGTTGTTGTaGCTCTGTGGAGTGAAGATG +
Preference number: 2 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLLQLLL*LCGVKM
Trigger: CATCTTCACTCCACAGAGTCACAACAACAGCTGCAA...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR GCA 90 bp ACGGCAGAATCTGGTCCTTTTCCCACCTTCTGTCAGTGTAAACATTGCTTCAACGCTGGTTGGTTGTGCTaGATGCTTTTAATCCCAGTA +
Preference number: 2 (lower is better)
Translates to: TAESGPFPTFCQCKHCFNAGWLC*MLLIPV
Trigger: TACTGGGATTAAAAGCATGCAGCACAACCAACCAGC...GTTGAAGCAATGTTTACACTGACAGAAGGTGGGAAAAGGACCAGATTCTGCCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR GCA 90 bp TCAGCATCAGGCTCTCTGGCTTTGGAGTCAGCAAACTCAGAAAGTCACTCTCTTGAGCAATTTCACTACTaGCACACACTGGCTGTTTTT +
Preference number: 2 (lower is better)
Translates to: SASGSLALESANSESHSLEQFHY*HTLAVF
Trigger: AAAAACAGCCAGTGTGTGGCAGTAGTGAAATTGCTC...AAGAGAGTGACTTTCTGAGTTTGCTGACTCCAAAGCCAGAGAGCCTGATGCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR GCA 90 bp TTACCCTATTTATGCAAAGTGATACCTTCCTGGTTGAGTAAGATAGCCTTCCTACGCTGCCTGGTCAAGTaGCCTCCAAGCACACTTTGT +
Preference number: 2 (lower is better)
Translates to: LPYLCKVIPSWLSKIAFLRCLVK*PPSTLC
Trigger: ACAAAGTGTGCTTGGAGGGCACTTGACCAGGCAGCG...TAGGAAGGCTATCTTACTCAACCAGGAAGGTATCACTTTGCATAAATAGGGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR-3UTR CCA 90 bp GGTAAGAGATGTATGTTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAAAAGAGAAGGCCAACCTaGAATTCCTGCCTTCCCATT +
Preference number: 2 (lower is better)
Translates to: GKRCMFTIQRPARTACRKKRRPT*NSCLPI
Trigger: AATGGGAAGGCAGGAATTCCAGGTTGGCCTTCTCTT...TTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAACATACATCTCTTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp TTAGAAACATGCTGGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAGAAGAGAAGGCCAACCTaGAATTCCTGCCTTCCCATT +
Preference number: 2 (lower is better)
Translates to: LETCWLVVLHAFNPSTREKRRPT*NSCLPI
Trigger: AATGGGAAGGCAGGAATTCCAGGTTGGCCTTCTCTT...CTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp GAACAAAATATACTGGGTTACAGGCAGAATAGAGATCTAAACCCGCTGCCTGGTCAAAATCCTGAATCCTaGAGGCACAGGTATGGATGC +
Preference number: 2 (lower is better)
Translates to: EQNILGYRQNRDLNPLPGQNPES*RHRYGC
Trigger: GCATCCATACCTGTGCCTCCAGGATTCAGGATTTTG...ACCAGGCAGCGGGTTTAGATCTCTATTCTGCCTGTAACCCAGTATATTTTGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp GGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCATAGGCATGCCCCTCTGTCAGCATCAGGCTCTCTaGCTTTGGAGTCAGCAAACT +
Preference number: 2 (lower is better)
Translates to: GTMLISLGGYHFIGMPLCQHQAL*LWSQQT
Trigger: AGTTTGCTGACTCCAAAGCCAGAGAGCCTGATGCTG...ACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp TGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTTCCAGCCCATCTGGATaGAGTCATCTAGTTTTGACC +
Preference number: 2 (lower is better)
Translates to: WKVWCYGGGHPWNYAYFFSSPSG*SHLVLT
Trigger: GGTCAAAACTAGATGACTCCATCCAGATGGGCTGGA...AAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR GCA 90 bp GGTAAGAGATGTATGTTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAATTATCTGTCTCTCCGTaGTCCCTGCTTATCTACTGT +
Preference number: 2 (lower is better)
Translates to: GKRCMFTIQRPARTACRKLSVSP*SLLIYC
Trigger: ACAGTAGATAAGCAGGGAGCACGGAGAGACAGATAA...TTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAACATACATCTCTTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR GCA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTACAGATAATTCCGTTTaGCAAGTGTGTGGGTGGGTA +
Preference number: 2 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLTDNSV*QVCGWV
Trigger: TACCCACCCACACACTTGGCAAACGGAATTATCTGT...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACCAGGCTCTCTGGCTTTaGAGTCAGCAAACTCAGAAA +
Preference number: 2 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYQALWL*SQQTQK
Trigger: TTTCTGAGTTTGCTGACTCCAAAGCCAGAGAGCCTG...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp CTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCCAGCCCATCTGGATaGAGTCATCTAGTTTTGACC +
Preference number: 2 (lower is better)
Translates to: LWRWPSLELCLFLWEVIISSPSG*SHLVLT
Trigger: GGTCAAAACTAGATGACTCCATCCAGATGGGCTGGA...AATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACCGTTTGCCAAGTGTGTaGGTGGGTAAGAGATGTATG +
Preference number: 2 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYRLPSV*VGKRCM
Trigger: CATACATCTCTTACCCACCCACACACTTGGCAAACG...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp TGGCTCTCTAATGGGAACAGTCATAGTTGCCCTACACAGTTTTGCAGGAAGTGCAAGAAGCTTAATGCATaGTCATCTTTGAGCATTTGG +
Preference number: 2 (lower is better)
Translates to: WLSNGNSHSCPTQFCRKCKKLNA*SSLSIW
Trigger: CCAAATGCTCAAAGATGATCATGCATTAAGCTTCTT...GCACTTCCTGCAAAACTGTGTAGGGCAACTATGACTGTTCCCATTAGAGAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR-3UTR TCA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTGTTTATATTCTTTCCTaGGAACTCTACTCTTCCCGC +
Preference number: 2 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLVYILS*ELYSSR
Trigger: GCGGGAAGAGTAGAGTTCTCAGGAAAGAATATAAAC...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR GCA 90 bp TGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTCAAATCATAGTGTCCTaGTGTCCTTGTGAGTGTCTT +
Preference number: 2 (lower is better)
Translates to: WKVWCYGGGHPWNYAYFFQIIVS*CPCECL
Trigger: AAGACACTCACAAGGACAGCAGGACACTATGATTTG...AAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTGCTTTTCTTATTCTTTaGCTTAAGCAGTGGGGTTGG +
Preference number: 2 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLAFLIL*LKQWGW
Trigger: CCAACCCCACTGCTTAAGCCAAAGAATAAGAAAAGC...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp TGGCTCTCTAATGGGAACAGTCATAGTTGCCCTACACAGTTTTGCAGGAAGTGCTCAGAATGTTCAAAATaGACCATCTCATATCCTTCC +
Preference number: 2 (lower is better)
Translates to: WLSNGNSHSCPTQFCRKCSECSK*TISYPS
Trigger: GGAAGGATATGAGATGGTCCATTTTGAACATTCTGA...GCACTTCCTGCAAAACTGTGTAGGGCAACTATGACTGTTCCCATTAGAGAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR-3UTR CCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCGAGAACAAAATATACTaGGTTACAGGCAGAATAGAG +
Preference number: 2 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFENKIY*VTGRIE
Trigger: CTCTATTCTGCCTGTAACCCAGTATATTTTGTTCTC...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR GCA 90 bp GATGAAAAGTCTATAATACCATACACATCCTTTATCTGTCTCTCCGTGCTCCCTGCTGGTTGGTTGTGCTaGATGCTTTTAATCCCAGTA +
Preference number: 2 (lower is better)
Translates to: DEKSIIPYTSFICLSVLPAGWLC*MLLIPV
Trigger: TACTGGGATTAAAAGCATGCAGCACAACCAACCAGC...AGGGAGCACGGAGAGACAGATAAAGGATGTGTATGGTATTATAGACTTTTCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR GCA 90 bp CTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGGGAGGTTATCATTCAAATCATAGTGTCCTaGTGTCCTTGTGAGTGTCTT +
Preference number: 2 (lower is better)
Translates to: LWRWPSLELCLFLWEVIIQIIVS*CPCECL
Trigger: AAGACACTCACAAGGACAGCAGGACACTATGATTTG...AATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp TGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTCTGGAGGCACAGGTATaGATGCTTTTCTTATTCTTT +
Preference number: 2 (lower is better)
Translates to: WKVWCYGGGHPWNYAYFFLEAQV*MLFLFF
Trigger: AAAGAATAAGAAAAGCATCCATACCTGTGCCTCCAG...AAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp TTACCCTATTTATGCAAAGTGATACCTTCCTGGTTGAGTAAGATAGCCTTCCTAAATGGATGGAAGGTTTaGTGCTATGGAGGTGGCCAT +
Preference number: 2 (lower is better)
Translates to: LPYLCKVIPSWLSKIAFLNGWKV*CYGGGH
Trigger: ATGGCCACCTCCATAGCACCAAACCTTCCATCCATT...TAGGAAGGCTATCTTACTCAACCAGGAAGGTATCACTTTGCATAAATAGGGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR-3UTR TCA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATAATTGTTCTAGTGTGGTaGGAAGAAAGGGGGATGACG +
Preference number: 2 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIIIVLVW*EERGMT
Trigger: CGTCATCCCCCTTTCTTCTCACCACACTAGAACAAT...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp TATCTGTCTCTCCGTGCTCCCTGCTTATCTACTGTGAAGAAATATATGGGAAGAATGCATGATCATCTTTaGGCATTTGGTAGTCAGCAT +
Preference number: 2 (lower is better)
Translates to: YLSLRAPCLSTVKKYMGRMHDHL*AFGSQH
Trigger: ATGCTGACTACCAAATGCTCAAAGATGATCATGCAT...TCTTCCCATATATTTCTTCACAGTAGATAAGCAGGGAGCACGGAGAGACAGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp CTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGGGAGGTTATCATTATGCATGATCATCTTTaGGCATTTGGTAGTCAGCAT +
Preference number: 2 (lower is better)
Translates to: LWRWPSLELCLFLWEVIIMHDHL*AFGSQH
Trigger: ATGCTGACTACCAAATGCTCAAAGATGATCATGCAT...AATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp CTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGGGAGGTTATCATTCCTGCTTATCTACTGTaGAGAAATATATGGGAAGAA +
Preference number: 2 (lower is better)
Translates to: LWRWPSLELCLFLWEVIIPAYLL*RNIWEE
Trigger: TTCTTCCCATATATTTCTTCACAGTAGATAAGCAGG...AATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CCA 90 bp TTACCCTATTTATGCAAAGTGATACCTTCCTGGTTGAGTAAGATAGCCTTCCTATGCATGCTGATTTCATaGCATACACATGAACCACTA +
Preference number: 2 (lower is better)
Translates to: LPYLCKVIPSWLSKIAFLCMLIS*HTHEPL
Trigger: TAGTGGTTCATGTGTATGCCATGAAATCAGCATGCA...TAGGAAGGCTATCTTACTCAACCAGGAAGGTATCACTTTGCATAAATAGGGTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR-3UTR CCA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATACTGGAGGCACAGGTATaGATGCTTTTCTTATTCTTT +
Preference number: 2 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIILEAQV*MLFLFF
Trigger: AAAGAATAAGAAAAGCATCCATACCTGTGCCTCCAG...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CAA 90 bp GTAGACGCCACCACTTCAAAAACTCTGACACATGTATCGTATTCCTaGGCTGGATTATGGTTTCATTTTATTCTATTAATGTCTGGAAAA +
Preference number: 2 (lower is better)
Translates to: VDATTSKTLTHVSYS*AGLWFHFILLMSGK
Trigger: TTTTCCAGACATTAATAGAATAAAATGAAACCATAATCCAGCCAAGGAATACGATACATGTGTCAGAGTTTTTGAAGTGGTGGCGTCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR TCA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATACCTGCTTATCTACTGTaGAGAAATATATGGGAAGAA +
Preference number: 2 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIIPAYLL*RNIWEE
Trigger: TTCTTCCCATATATTTCTTCACAGTAGATAAGCAGG...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR GCA 72 bp TGGGCTACGTCACCAGGTAGCTTGGGTTCCCACGCTTaGCTCAGCCAGTTTGTGGCCAGTTTTAAGCTTCCG +
Preference number: 3 (lower is better)
Translates to: WATSPGSLGSHA*LSQFVASFKLP
Trigger: CGGAAGCTTAAAACTGGCCACAAACTGGCTGAGGCAAGCGTGGGAACCCAAGCTACCTGGTGACGTAGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR CCA 72 bp GGGAGCCAAAGCTGTGCTATGTTGCCTTCTGGCAACTaGGACTCATTCACTGTTCTGAAGTCCCGGGAGGTC +
Preference number: 3 (lower is better)
Translates to: GSQSCAMLPSGN*DSFTVLKSREV
Trigger: GACCTCCCGGGACTTCAGAACAGTGAATGAGTCCCAGTTGCCAGAAGGCAACATAGCACAGCTTTGGCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR GCA 72 bp GCCTACTGGCCTTCTTTGCATTGGGAGCCAAAGCTGTaGTATGTTGCCTTCTGGCAACTGGGACTCATTCAC +
Preference number: 3 (lower is better)
Translates to: AYWPSLHWEPKL*YVAFWQLGLIH
Trigger: GTGAATGAGTCCCAGTTGCCAGAAGGCAACATAGCACAGCTTTGGCTCCCAATGCAAAGAAGGCCAGTAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR CCA 72 bp GTAGCTTGGGTTCCCACGCTTGCCTCAGCCAGTTTGTaGCCAGTTTTAAGCTTCCGTTTCCTTGGCTCTCTA +
Preference number: 3 (lower is better)
Translates to: VAWVPTLASASL*PVLSFRFLGSL
Trigger: TAGAGAGCCAAGGAAACGGAAGCTTAAAACTGGCCACAAACTGGCTGAGGCAAGCGTGGGAACCCAAGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR TCA 72 bp GAAGAAAGGGGGATGACGATGAGGTCAAAGAGGCCCTaGGAGCAATTTCACTACTGCCACACACTGGCTGTT +
Preference number: 3 (lower is better)
Translates to: EERGMTMRSKRP*EQFHYCHTLAV
Trigger: AACAGCCAGTGTGTGGCAGTAGTGAAATTGCTCTCAGGGCCTCTTTGACCTCATCGTCATCCCCCTTTCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR GCA 72 bp GACCTGAACTATCCAGCAGAGCCTACTGGCCTTCTTTaGATTGGGAGCCAAAGCTGTGCTATGTTGCCTTCT +
Preference number: 3 (lower is better)
Translates to: DLNYPAEPTGLL*IGSQSCAMLPS
Trigger: AGAAGGCAACATAGCACAGCTTTGGCTCCCAATGCAAAGAAGGCCAGTAGGCTCTGCTGGATAGTTCAGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR CCA 72 bp ATACAGGATGCTCTGGGAAGCATTCAGTTCTGGGAATaGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCC +
Preference number: 3 (lower is better)
Translates to: IQDALGSIQFWE*MEGLVLWRWPS
Trigger: GGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTCCCAGAACTGAATGCTTCCCAGAGCATCCTGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp GAACTATCCAGCAGAGCCTACTGGCCTTCTTTGCATTaGGAGCCAAAGCTGTGCTATGTTGCCTTCTGGCAA +
Preference number: 3 (lower is better)
Translates to: ELSSRAYWPSLH*EPKLCYVAFWQ
Trigger: TTGCCAGAAGGCAACATAGCACAGCTTTGGCTCCCAATGCAAAGAAGGCCAGTAGGCTCTGCTGGATAGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR TCA 72 bp TGCCCTACACAGTTTTGCAGGAAGTGCATCAGAGGATaGGTGTGCTGTTCTCATTGCTGTGTCTGGCTAGCA +
Preference number: 3 (lower is better)
Translates to: CPTQFCRKCIRG*VCCSHCCVWLA
Trigger: TGCTAGCCAGACACAGCAATGAGAACAGCACACTCATCCTCTGATGCACTTCCTGCAAAACTGTGTAGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR TCA 72 bp TGTTGCCTTCTGGCAACTGGGACTCATTCACTGTTCTaGAGTCCCGGGAGGTCTTTCTTCTGGGTTTGTACA +
Preference number: 3 (lower is better)
Translates to: CCLLATGTHSLF*SPGRSFFWVCT
Trigger: TGTACAAACCCAGAAGAAAGACCTCCCGGGACTTCAGAACAGTGAATGAGTCCCAGTTGCCAGAAGGCAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR-3UTR CAA 90 bp GAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATCAGGCTCTCTGGCTTaGGAGTCAGCAAACTCAGAA +
Preference number: 3 (lower is better)
Translates to: EWMEGLVLWRWPSLELCLSGSLA*ESANSE
Trigger: TTCTGAGTTTGCTGACTCCAAAGCCAGAGAGCCTGA...TAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp TACAAGATACAGGATGCTCTGGGAAGCATTCAGTTCTaGGAATGGATGGAAGGTTTGGTGCTATGGAGGTGG +
Preference number: 3 (lower is better)
Translates to: YKIQDALGSIQF*EWMEGLVLWRW
Trigger: CCACCTCCATAGCACCAAACCTTCCATCCATTCCCAGAACTGAATGCTTCCCAGAGCATCCTGTATCTTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CAA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTAGGCATGCCCCTCTGTaGTCCTCTAAACAACCTGTT +
Preference number: 3 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLRHAPL*SSKQPV
Trigger: AACAGGTTGTTTAGAGGACAACAGAGGGGCATGCCT...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR GCA 72 bp GAAGCATTCAGTTCTGGGAATGGATGGAAGGTTTGGTaGTATGGAGGTGGCCATCCTTGGAACTATGCTTAT +
Preference number: 3 (lower is better)
Translates to: EAFSSGNGWKVW*YGGGHPWNYAY
Trigger: ATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTCCCAGAACTGAATGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR GCA 72 bp CGTTCAAGCACTCACAAAGCTCTACAAGATACAGGATaGTCTGGGAAGCATTCAGTTCTGGGAATGGATGGA +
Preference number: 3 (lower is better)
Translates to: RSSTHKALQDTG*SGKHSVLGMDG
Trigger: TCCATCCATTCCCAGAACTGAATGCTTCCCAGAGCATCCTGTATCTTGTAGAGCTTTGTGAGTGCTTGAACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp TTCTGGGAATGGATGGAAGGTTTGGTGCTATGGAGGTaGCCATCCTTGGAACTATGCTTATTTCTTTGGGAG +
Preference number: 3 (lower is better)
Translates to: FWEWMEGLVLWR*PSLELCLFLWE
Trigger: CTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTCCCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp AGCCAGTTTGTGGCCAGTTTTAAGCTTCCGTTTCCTTaGCTCTCTAATGGGAACAGTCATAGTTGCCCTACA +
Preference number: 3 (lower is better)
Translates to: SQFVASFKLPFP*LSNGNSHSCPT
Trigger: TGTAGGGCAACTATGACTGTTCCCATTAGAGAGCCAAGGAAACGGAAGCTTAAAACTGGCCACAAACTGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
3UTR-3UTR CAA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCTGCAATTCACCTCTTTaGTGTCTAAGAAAAGCCACC +
Preference number: 3 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFCNSPL*CLRKAT
Trigger: GGTGGCTTTTCTTAGACACAAAAGAGGTGAATTGCA...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR TCA 72 bp GGCAGAGATGTGCATGCTGATTTCATGGCATACACATaGACCACTATCTCACACAAGCGCAGGAACAACATA +
Preference number: 3 (lower is better)
Translates to: GRDVHADFMAYT*TTISHKRRNNI
Trigger: TATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAATCAGCATGCACATCTCTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR TCA 72 bp GCTGTCCTGACTTCAAGAAGGCAGAGATGTGCATGCTaGTTTCATGGCATACACATGAACCACTATCTCACA +
Preference number: 3 (lower is better)
Translates to: AVLTSRRQRCAC*FHGIHMNHYLT
Trigger: TGTGAGATAGTGGTTCATGTGTATGCCATGAAATCAGCATGCACATCTCTGCCTTCTTGAAGTCAGGACAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR GCA 72 bp GGGGTTGGCCGTAGTAAACCACTAAGTTTAGAAACATaGTGGTTGGTTGTGCTGCATGCTTTTAATCCCAGT +
Preference number: 3 (lower is better)
Translates to: GVGRSKPLSLET*WLVVLHAFNPS
Trigger: ACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAAACTTAGTGGTTTACTACGGCCAACCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp AAGCCTACAGATAATTCCGTTTGCCAAGTGTGTGGGTaGGTAAGAGATGTATGTTCACAATCCAGAGACCTG +
Preference number: 3 (lower is better)
Translates to: KPTDNSVCQVCG*VRDVCSQSRDL
Trigger: CAGGTCTCTGGATTGTGAACATACATCTCTTACCCACCCACACACTTGGCAAACGGAATTATCTGTAGGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp GACTTCAAGAAGGCAGAGATGTGCATGCTGATTTCATaGCATACACATGAACCACTATCTCACACAAGCGCA +
Preference number: 3 (lower is better)
Translates to: DFKKAEMCMLIS*HTHEPLSHTSA
Trigger: TGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAATCAGCATGCACATCTCTGCCTTCTTGAAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp AAGCACTCACAAAGCTCTACAAGATACAGGATGCTCTaGGAAGCATTCAGTTCTGGGAATGGATGGAAGGTT +
Preference number: 3 (lower is better)
Translates to: KHSQSSTRYRML*EAFSSGNGWKV
Trigger: AACCTTCCATCCATTCCCAGAACTGAATGCTTCCCAGAGCATCCTGTATCTTGTAGAGCTTTGTGAGTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CAA 90 bp GTGAGTGTCTTACTTCTCCATCTTAATGGCTGTCCTGACTTCAAGAAGGCAGAGTTAGAAACATGCTGGTaGGTTGTGCTGCATGCTTTT +
Preference number: 3 (lower is better)
Translates to: VSVLLLHLNGCPDFKKAELETCW*VVLHAF
Trigger: AAAAGCATGCAGCACAACCAACCAGCATGTTTCTAA...CTCTGCCTTCTTGAAGTCAGGACAGCCATTAAGATGGAGAAGTAAGACACTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CAA 90 bp ACGGCAGAATCTGGTCCTTTTCCCACCTTCTGTCAGTGTAAACATTGCTTCAACCCTTTCAGCTCCTTCTaGTCCATATTTGTTTCATGC +
Preference number: 3 (lower is better)
Translates to: TAESGPFPTFCQCKHCFNPFSSF*SIFVSC
Trigger: GCATGAAACAAATATGGACAAGAAGGAGCTGAAAGG...GTTGAAGCAATGTTTACACTGACAGAAGGTGGGAAAAGGACCAGATTCTGCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR TCA 72 bp AGATCTCTAAGTTCAAGACCAGCCTCGTCTACAGAGTaGGTTCTAGGACAGTCAGGGCTAAAAAGAAAGAGA +
Preference number: 3 (lower is better)
Translates to: RSLSSRPASSTE*VLGQSGLKRKR
Trigger: TCTCTTTCTTTTTAGCCCTGACTGTCCTAGAACTCACTCTGTAGACGAGGCTGGTCTTGAACTTAGAGATCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp GTGGAAGAATGGGCTAAACATTTAGTTGGCTCATTATaGTGTATGTCTGCCATACTGGGTATAGAGTGGGCT +
Preference number: 3 (lower is better)
Translates to: VEEWAKHLVGSL*CMSAILGIEWA
Trigger: AGCCCACTCTATACCCAGTATGGCAGACATACACCATAATGAGCCAACTAAATGTTTAGCCCATTCTTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp GGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTaGAACTATGCTTATTTCTTTGGGAGGTTATCATTT +
Preference number: 3 (lower is better)
Translates to: GWKVWCYGGGHP*NYAYFFGRLSF
Trigger: AAATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR TCA 72 bp AACATTGCTTCAACCAGACCTGTTTATATTCTTTCCTaGGAACTCTACTCTTCCCGCCTTTCAGCTCCTTCT +
Preference number: 3 (lower is better)
Translates to: NIASTRPVYILS*ELYSSRLSAPS
Trigger: AGAAGGAGCTGAAAGGCGGGAAGAGTAGAGTTCTCAGGAAAGAATATAAACAGGTCTGGTTGAAGCAATGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp GTTGGCCGTAGTAAACCACTAAGTTTAGAAACATGCTaGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACT +
Preference number: 3 (lower is better)
Translates to: VGRSKPLSLETC*LVVLHAFNPST
Trigger: AGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAAACTTAGTGGTTTACTACGGCCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp TCATTATGGTGTATGTCTGCCATACTGGGTATAGAGTaGGCTGCTATTCTTAATGAGAATGGTTTTCTGGGG +
Preference number: 3 (lower is better)
Translates to: SLWCMSAILGIE*AAILNENGFLG
Trigger: CCCCAGAAAACCATTCTCATTAAGAATAGCAGCCCACTCTATACCCAGTATGGCAGACATACACCATAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR GCA 72 bp ACCATACACATCCTTTATCTGTCTCTCCGTGCTCCCTaGTTATCTACTGTGAAGAAATATATGGGAAGAATC +
Preference number: 3 (lower is better)
Translates to: TIHILYLSLRAP*LSTVKKYMGRI
Trigger: GATTCTTCCCATATATTTCTTCACAGTAGATAAGCAGGGAGCACGGAGAGACAGATAAAGGATGTGTATGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp TCAGCAAACTCAGAAAGTCACTCTCTTCCGTTTCAGTaGGTTCTCAGAATGTTCAAAATGGACCATCTCATA +
Preference number: 3 (lower is better)
Translates to: SANSESHSLPFQ*VLRMFKMDHLI
Trigger: TATGAGATGGTCCATTTTGAACATTCTGAGAACCCACTGAAACGGAAGAGAGTGACTTTCTGAGTTTGCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CAA 90 bp GGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCATAGGCATGCCCCTCTGTCATGTATCGTATTCCTaGGCTGGATTATGGTTTCAT +
Preference number: 3 (lower is better)
Translates to: GTMLISLGGYHFIGMPLCHVSYS*AGLWFH
Trigger: ATGAAACCATAATCCAGCCAAGGAATACGATACATG...ACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CAA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATATGCAATTCACCTCTTTaGTGTCTAAGAAAAGCCACC +
Preference number: 3 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIICNSPL*CLRKAT
Trigger: GGTGGCTTTTCTTAGACACAAAAGAGGTGAATTGCA...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR-3UTR CAA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATATTAGAAACATGCTGGTaGGTTGTGCTGCATGCTTTT +
Preference number: 3 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIILETCW*VVLHAF
Trigger: AAAAGCATGCAGCACAACCAACCAGCATGTTTCTAA...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CCA 72 bp GTTCTGTTACCCTATTTATGCAAAGTGATACCTTCCTaGTTGAGTAAGATAGCCTTCCTAGAAACTGAGAAA +
Preference number: 3 (lower is better)
Translates to: VLLPYLCKVIPS*LSKIAFLETEK
Trigger: TTTCTCAGTTTCTAGGAAGGCTATCTTACTCAACCAGGAAGGTATCACTTTGCATAAATAGGGTAACAGAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR TCA 90 bp CAGAGCTGTCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACAGGGAGCTGGGCACACTaGCCATGGCTGTGGAATGTC +
Preference number: 4 (lower is better)
Translates to: QSCLVRRAASHLSLTLFTGSWAH*PWLWNV
Trigger: GACATTCCACAGCCATGGTCAGTGTGCCCAGCTCCC...TGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGACAGCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACAAGGCACCCAGTTGCACAAGGCCTTaGCTCGAGGCACCCCATCCA +
Preference number: 4 (lower is better)
Translates to: SGSQSCLPPLPHPVHKAPSCTRP*LEAPHP
Trigger: TGGATGGGGTGCCTCGAGCCAAGGCCTTGTGCAACT...GGGTGCCTTGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp TCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACAAGGCACCCATGCCTTCTCCCTTCTaGAGGTCCAGCTCTTCGGGT +
Preference number: 4 (lower is better)
Translates to: SGSQSCLPPLPHPVHKAPMPSPF*RSSSSG
Trigger: ACCCGAAGAGCTGGACCTGCAGAAGGGAGAAGGCAT...GGGTGCCTTGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACAAGGCACCCTTCTGGGGCTGCTCTTaGCTTTCCTGTTGTCCTGCA +
Preference number: 4 (lower is better)
Translates to: SGSQSCLPPLPHPVHKAPFWGCS*LSCCPA
Trigger: TGCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAA...GGGTGCCTTGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp CAGAGCTGTCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACAGGTTTGCAGAAGGTGTaGTGGCAGGGGAGAACTTTG +
Preference number: 4 (lower is better)
Translates to: QSCLVRRAASHLSLTLFTGLQKV*WQGRTL
Trigger: CAAAGTTCTCCCCTGCCAGCACACCTTCTGCAAACC...TGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGACAGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp TCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACAAGGCACCCTTATTTGAAAGGTGTTaGTGGGAGCTGGGCACACTG +
Preference number: 4 (lower is better)
Translates to: SGSQSCLPPLPHPVHKAPLFERC*WELGTL
Trigger: CAGTGTGCCCAGCTCCCAGCAACACCTTTCAAATAA...GGGTGCCTTGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp AAGACCAGCCTCGTCTACAGAGTGAGTTCTAGGACAGTCAGGGCTAAAAAGAAAGGAGGGTGGCGCAGATaGAGGCGGCTTGGGTGGCGG +
Preference number: 4 (lower is better)
Translates to: KTSLVYRVSSRTVRAKKKGGWRR*RRLGWR
Trigger: CCGCCACCCAAGCCGCCTGCATCTGCGCCACCCTCC...TTTCTTTTTAGCCCTGACTGTCCTAGAACTCACTCTGTAGACGAGGCTGGTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TGGCTCTCTAATGGGAACAGTCATAGTTGCCCTACACAGTTTTGCAGGAAGTGCGAGGGCTCTGCAGAGTaGGGGTGGTTGGGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: WLSNGNSHSCPTQFCRKCEGSAE*GWLGQL
Trigger: CAGCTGCCCCAACCACCCCCACTCTGCAGAGCCCTC...GCACTTCCTGCAAAACTGTGTAGGGCAACTATGACTGTTCCCATTAGAGAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR CCA 90 bp CAGAGCTGTCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACAGATCCCAGATTGAACTaGTCTCTGCAGGGATCCATT +
Preference number: 4 (lower is better)
Translates to: QSCLVRRAASHLSLTLFTDPRLN*SLQGSI
Trigger: AATGGATCCCTGCAGAGACCAGTTCAATCTGGGATC...TGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGACAGCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCATAGGCATGCCCCTCTGTGGAGGGTGGCGCAGATaGAGGCGGCTTGGGTGGCGG +
Preference number: 4 (lower is better)
Translates to: GTMLISLGGYHFIGMPLCGGWRR*RRLGWR
Trigger: CCGCCACCCAAGCCGCCTGCATCTGCGCCACCCTCC...ACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GTGGTGAGAAGAAAGGGGGATGACGATGAGGTCAAAGAGGCCCTGAGAGCAATTTGGTCGCTTTGCCTCTaGATGGGGAGGACATCAGGG +
Preference number: 4 (lower is better)
Translates to: VVRRKGDDDEVKEALRAIWSLCL*MGRTSG
Trigger: CCCTGATGTCCTCCCCATCCAGAGGCAAAGCGACCA...AATTGCTCTCAGGGCCTCTTTGACCTCATCGTCATCCCCCTTTCTTCTCACCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CAA 72 bp CAGGTAGCTTGGGTTCCCACGCTTGCCTCAGCCAGTTaGTGGCCAGTTTTAAGCTTCCGTTTCCTTGGCTCT +
Preference number: 4 (lower is better)
Translates to: QVAWVPTLASAS*WPVLSFRFLGS
Trigger: AGAGCCAAGGAAACGGAAGCTTAAAACTGGCCACAAACTGGCTGAGGCAAGCGTGGGAACCCAAGCTACCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR CCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCCTTCCTCCTGGACCCTaGGCTCTTTCGGAGCGAGGA +
Preference number: 4 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFLPPGP*ALSERG
Trigger: TCCTCGCTCCGAAAGAGCCCAGGGTCCAGGAGGAAG...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GTGGTGAGAAGAAAGGGGGATGACGATGAGGTCAAAGAGGCCCTGAGAGCAATTAGGACACAGAGGAGGTaGATAACGCCCATGTGGTGC +
Preference number: 4 (lower is better)
Translates to: VVRRKGDDDEVKEALRAIRTQRR*ITPMWC
Trigger: GCACCACATGGGCGTTATCCACCTCCTCTGTGTCCT...AATTGCTCTCAGGGCCTCTTTGACCTCATCGTCATCCCCCTTTCTTCTCACCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATGCAGGCGGCTTGGGTaGCGGTTCACTCTTGATGGG +
Preference number: 4 (lower is better)
Translates to: EWMEGLVLWRWPSLELCLCRRLG*RFTLDG
Trigger: CCCATCAAGAGTGAACCGCCACCCAAGCCGCCTGCA...TAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GTGGTGAGAAGAAAGGGGGATGACGATGAGGTCAAAGAGGCCCTGAGAGCAATTTTCCAGAGGTGGGACTaGAGGCAGAGTGTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: VVRRKGDDDEVKEALRAIFQRWD*RQSVWW
Trigger: CCACCAAACACTCTGCCTCCAGTCCCACCTCTGGAA...AATTGCTCTCAGGGCCTCTTTGACCTCATCGTCATCCCCCTTTCTTCTCACCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCGTTTGTTGCCCGGAGTaGCAGCCACTTCGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFVCCPE*QPLRWA
Trigger: TGCCCACCGAAGTGGCTGCCACTCCGGGCAACAAAC...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CAA 72 bp GGACCTGAACTATCCAGCAGAGCCTACTGGCCTTCTTaGCATTGGGAGCCAAAGCTGTGCTATGTTGCCTTC +
Preference number: 4 (lower is better)
Translates to: GPELSSRAYWPS*HWEPKLCYVAF
Trigger: GAAGGCAACATAGCACAGCTTTGGCTCCCAATGCAAAGAAGGCCAGTAGGCTCTGCTGGATAGTTCAGGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR TCA 90 bp ACGGCAGAATCTGGTCCTTTTCCCACCTTCTGTCAGTGTAAACATTGCTTCAACCATCCATGTGGATCCTaGCACTGGGCACCAGCCGGA +
Preference number: 4 (lower is better)
Translates to: TAESGPFPTFCQCKHCFNHPCGS*HWAPAG
Trigger: TCCGGCTGGTGCCCAGTGTCAGGATCCACATGGATG...GTTGAAGCAATGTTTACACTGACAGAAGGTGGGAAAAGGACCAGATTCTGCCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp GTGAGTGTCTTACTTCTCCATCTTAATGGCTGTCCTGACTTCAAGAAGGCAGAGGGGAGCTGGGCACACTaGCCATGGCTGTGGAATGTC +
Preference number: 4 (lower is better)
Translates to: VSVLLLHLNGCPDFKKAEGSWAH*PWLWNV
Trigger: GACATTCCACAGCCATGGTCAGTGTGCCCAGCTCCC...CTCTGCCTTCTTGAAGTCAGGACAGCCATTAAGATGGAGAAGTAAGACACTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp GAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTACCGAGACGTTTGGCTTaGGGAAGGTCAGGCAGTCCT +
Preference number: 4 (lower is better)
Translates to: EWMEGLVLWRWPSLELCLPRRLA*GRSGSP
Trigger: AGGACTGCCTGACCTTCCTCAAGCCAAACGTCTCGG...TAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTAAGTTGTAGAGGGCTCTaGAGAGTGGGGGTGGTTGGG +
Preference number: 4 (lower is better)
Translates to: EWMEGLVLWRWPSLELCLSCRGL*RVGVVG
Trigger: CCCAACCACCCCCACTCTGCAGAGCCCTCTACAACT...TAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GAACAAAATATACTGGGTTACAGGCAGAATAGAGATCTAAACCCGCTGCCTGGTTCCCGGGGAGGCAGGTaGAGGCTGAGAACTGCTGAC +
Preference number: 4 (lower is better)
Translates to: EQNILGYRQNRDLNPLPGSRGGR*RLRTAD
Trigger: GTCAGCAGTTCTCAGCCTGCACCTGCCTCCCCGGGA...ACCAGGCAGCGGGTTTAGATCTCTATTCTGCCTGTAACCCAGTATATTTTGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GGTAAGAGATGTATGTTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAATCCCGGGGAGGCAGGTaGAGGCTGAGAACTGCTGAC +
Preference number: 4 (lower is better)
Translates to: GKRCMFTIQRPARTACRKSRGGR*RLRTAD
Trigger: GTCAGCAGTTCTCAGCCTGCACCTGCCTCCCCGGGA...TTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAACATACATCTCTTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCATAGGCATGCCCCTCTGTGAGGGCTCTGCAGAGTaGGGGTGGTTGGGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: GTMLISLGGYHFIGMPLCEGSAE*GWLGQL
Trigger: CAGCTGCCCCAACCACCCCCACTCTGCAGAGCCCTC...ACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp AAGACCAGCCTCGTCTACAGAGTGAGTTCTAGGACAGTCAGGGCTAAAAAGAAAGTTTGTTGCCCGGAGTaGCAGCCACTTCGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: KTSLVYRVSSRTVRAKKKVCCPE*QPLRWA
Trigger: TGCCCACCGAAGTGGCTGCCACTCCGGGCAACAAAC...TTTCTTTTTAGCCCTGACTGTCCTAGAACTCACTCTGTAGACGAGGCTGGTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTAGCTGGTAGGGAAGTCTaGCTTGTCCCCATGTTGGGT +
Preference number: 4 (lower is better)
Translates to: EWMEGLVLWRWPSLELCLAGREV*LVPMLG
Trigger: ACCCAACATGGGGACAAGGCAGACTTCCCTACCAGC...TAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTATAACGCCCATGTGGTaGAGACAGTGGGGCTCCGGG +
Preference number: 4 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLITPMW*RQWGSG
Trigger: CCCGGAGCCCCACTGTCTGCACCACATGGGCGTTAT...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGCACGAGCAACAGGTTaGCTGGCAGAGCCTCGATGC +
Preference number: 4 (lower is better)
Translates to: FTIQRPARTACRKRLIRPARATG*LAEPRC
Trigger: GCATCGAGGCTCTGCCAGCCAACCTGTTGCTCGTGC...AGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTCTTCCTCCTGGACCCTaGGCTCTTTCGGAGCGAGGA +
Preference number: 4 (lower is better)
Translates to: FTIQRPARTACRKRLIRPLPPGP*ALSERG
Trigger: TCCTCGCTCCGAAAGAGCCCAGGGTCCAGGAGGAAG...AGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCTCTGCAAAGCTACCCTaGGAGGACACAGAGGAGGTG +
Preference number: 4 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFSAKLP*EDTEEV
Trigger: CACCTCCTCTGTGTCCTCCCAGGGTAGCTTTGCAGA...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCTGGAGGCAGAGTGTTTaGTGGGCGGAGGGCTGTAAT +
Preference number: 4 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFWRQSV*WAEGCN
Trigger: ATTACAGCCCTCCGCCCACCAAACACTCTGCCTCCA...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCCGTGCTTTCCAGAGGTaGGACTGGAGGCAGAGTGTT +
Preference number: 4 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFRAFQR*DWRQSV
Trigger: AACACTCTGCCTCCAGTCCCACCTCTGGAAAGCACG...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTACGTGCTTTCCAGAGGTaGGACTGGAGGCAGAGTGTT +
Preference number: 4 (lower is better)
Translates to: EWMEGLVLWRWPSLELCLRAFQR*DWRQSV
Trigger: AACACTCTGCCTCCAGTCCCACCTCTGGAAAGCACG...TAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCATGTGTTGGTCGCTTTaGCTCTGGATGGGGAGGACA +
Preference number: 4 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFMCWSL*LWMGRT
Trigger: TGTCCTCCCCATCCAGAGGCAAAGCGACCAACACAT...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp ACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGTCATGCCTTCTCCCTTCTaGAGGTCCAGCTCTTCGGGT +
Preference number: 4 (lower is better)
Translates to: TIQRPARTACRKRLIRPVMPSPF*RSSSSG
Trigger: ACCCGAAGAGCTGGACCTGCAGAAGGGAGAAGGCAT...GACAGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTCCGGGGATCACCTTCTaGAAAGCTACCCTGGGAGGA +
Preference number: 4 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLPGITF*KATLGG
Trigger: TCCTCCCAGGGTAGCTTTGCAGAAGGTGATCCCCGG...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACGCACGAGCAACAGGTTaGCTGGCAGAGCCTCGATGC +
Preference number: 4 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYARATG*LAEPRC
Trigger: GCATCGAGGCTCTGCCAGCCAACCTGTTGCTCGTGC...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp CTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGGGAGGTTATCATTGGCACCCCATCCATGTaGATCCTGACACTGGGCACC +
Preference number: 4 (lower is better)
Translates to: LWRWPSLELCLFLWEVIIGTPSM*ILTLGT
Trigger: GGTGCCCAGTGTCAGGATCCACATGGATGGGGTGCC...AATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GAACAAAATATACTGGGTTACAGGCAGAATAGAGATCTAAACCCGCTGCCTGGTCGCTTTGCCTCTGGATaGGGAGGACATCAGGGACAG +
Preference number: 4 (lower is better)
Translates to: EQNILGYRQNRDLNPLPGRFASG*GGHQGQ
Trigger: CTGTCCCTGATGTCCTCCCCATCCAGAGGCAAAGCG...ACCAGGCAGCGGGTTTAGATCTCTATTCTGCCTGTAACCCAGTATATTTTGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GAACAAAATATACTGGGTTACAGGCAGAATAGAGATCTAAACCCGCTGCCTGGTCAGATCCCTTCCTCCTaGACCCTGGGCTCTTTCGGA +
Preference number: 4 (lower is better)
Translates to: EQNILGYRQNRDLNPLPGQIPSS*TLGSFG
Trigger: TCCGAAAGAGCCCAGGGTCCAGGAGGAAGGGATCTG...ACCAGGCAGCGGGTTTAGATCTCTATTCTGCCTGTAACCCAGTATATTTTGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp AAGACCAGCCTCGTCTACAGAGTGAGTTCTAGGACAGTCAGGGCTAAAAAGAAAATGTGGTGCAGACAGTaGGGCTCCGGGAATCAGGAA +
Preference number: 4 (lower is better)
Translates to: KTSLVYRVSSRTVRAKKKMWCRQ*GSGNQE
Trigger: TTCCTGATTCCCGGAGCCCCACTGTCTGCACCACAT...TTTCTTTTTAGCCCTGACTGTCCTAGAACTCACTCTGTAGACGAGGCTGGTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp ACGGCAGAATCTGGTCCTTTTCCCACCTTCTGTCAGTGTAAACATTGCTTCAACAGGACACAGAGGAGGTaGATAACGCCCATGTGGTGC +
Preference number: 4 (lower is better)
Translates to: TAESGPFPTFCQCKHCFNRTQRR*ITPMWC
Trigger: GCACCACATGGGCGTTATCCACCTCCTCTGTGTCCT...GTTGAAGCAATGTTTACACTGACAGAAGGTGGGAAAAGGACCAGATTCTGCCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACTGCAGGCGGCTTGGGTaGCGGTTCACTCTTGATGGG +
Preference number: 4 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYCRRLG*RFTLDG
Trigger: CCCATCAAGAGTGAACCGCCACCCAAGCCGCCTGCA...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTAAGGCAGAGTGTTTGGTaGGCGGAGGGCTGTAATTCT +
Preference number: 4 (lower is better)
Translates to: EWMEGLVLWRWPSLELCLRQSVW*AEGCNS
Trigger: AGAATTACAGCCCTCCGCCCACCAAACACTCTGCCT...TAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCTCTGTAGACATGGTTTaGAGAAGGTGTGCTGGCAGG +
Preference number: 4 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFSVDMV*RRCAGR
Trigger: CCTGCCAGCACACCTTCTGCAAACCATGTCTACAGA...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GATGAAAAGTCTATAATACCATACACATCCTTTATCTGTCTCTCCGTGCTCCCTATAACGCCCATGTGGTaGAGACAGTGGGGCTCCGGG +
Preference number: 4 (lower is better)
Translates to: DEKSIIPYTSFICLSVLPITPMW*RQWGSG
Trigger: CCCGGAGCCCCACTGTCTGCACCACATGGGCGTTAT...AGGGAGCACGGAGAGACAGATAAAGGATGTGTATGGTATTATAGACTTTTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACCCGGGGATCACCTTCTaGAAAGCTACCCTGGGAGGA +
Preference number: 4 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYPGITF*KATLGG
Trigger: TCCTCCCAGGGTAGCTTTGCAGAAGGTGATCCCCGG...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp TGGCCAGTTTTAAGCTTCCGTTTCCTTGGCTCTCTAATGGGAACAGTCATAGTTCGAAGGTCTGTTTGTTaGCCGGAGTGGCAGCCACTT +
Preference number: 4 (lower is better)
Translates to: WPVLSFRFLGSLMGTVIVRRSVC*PEWQPL
Trigger: AAGTGGCTGCCACTCCGGGCAACAAACAGACCTTCG...AACTATGACTGTTCCCATTAGAGAGCCAAGGAAACGGAAGCTTAAAACTGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR CCA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTATGTGGTGCAGACAGTaGGGCTCCGGGAATCAGGAA +
Preference number: 4 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLMWCRQ*GSGNQE
Trigger: TTCCTGATTCCCGGAGCCCCACTGTCTGCACCACAT...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TGGCCAGTTTTAAGCTTCCGTTTCCTTGGCTCTCTAATGGGAACAGTCATAGTTTGGAGGCAGAGTGTTTaGTGGGCGGAGGGCTGTAAT +
Preference number: 4 (lower is better)
Translates to: WPVLSFRFLGSLMGTVIVWRQSV*WAEGCN
Trigger: ATTACAGCCCTCCGCCCACCAAACACTCTGCCTCCA...AACTATGACTGTTCCCATTAGAGAGCCAAGGAAACGGAAGCTTAAAACTGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR CCA 90 bp TTAGAAACATGCTGGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAGTTCCAGAGGTGGGACTaGAGGCAGAGTGTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: LETCWLVVLHAFNPSTREFQRWD*RQSVWW
Trigger: CCACCAAACACTCTGCCTCCAGTCCCACCTCTGGAA...CTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp CAAAATCCTGAATCCTGGAGGCACAGGTATGGATGCTTTTCTTATTCTTTGGCTGTGGGGATCCCAGATTaGACTGGTCTCTGCAGGGAT +
Preference number: 4 (lower is better)
Translates to: QNPESWRHRYGCFSYSLAVGIPD*TGLCRD
Trigger: ATCCCTGCAGAGACCAGTTCAATCTGGGATCCCCAC...AGCCAAAGAATAAGAAAAGCATCCATACCTGTGCCTCCAGGATTCAGGATTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp GTGGTGAGAAGAAAGGGGGATGACGATGAGGTCAAAGAGGCCCTGAGAGCAATTGAAATCTCACGGTTTTaGCTTGCTTTTCAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: VVRRKGDDDEVKEALRAIEISRF*LAFQCH
Trigger: ATGGCACTGAAAAGCAAGTCAAAACCGTGAGATTTC...AATTGCTCTCAGGGCCTCTTTGACCTCATCGTCATCCCCCTTTCTTCTCACCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp TTAGAAACATGCTGGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAGGGTTTGCAGAAGGTGTaGTGGCAGGGGAGAACTTTG +
Preference number: 4 (lower is better)
Translates to: LETCWLVVLHAFNPSTREGLQKV*WQGRTL
Trigger: CAAAGTTCTCCCCTGCCAGCACACCTTCTGCAAACC...CTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp TTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTTCCGAGCTTTCCCTCTaGCCAGTTCTCATCTACACG +
Preference number: 4 (lower is better)
Translates to: FTIQRPARTACRKRLIRPSELSL*PVLIYT
Trigger: CGTGTAGATGAGAACTGGGCAGAGGGAAAGCTCGGA...AGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR GCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCGGGACAGGTGTCTTGTaGGTGATAACTGATGTCCTT +
Preference number: 4 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFGTGVL*VITDVL
Trigger: AAGGACATCAGTTATCACGCACAAGACACCTGTCCC...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCATAGGCATGCCCCTCTGTGCTGGTAGGGAAGTCTaGCTTGTCCCCATGTTGGGT +
Preference number: 4 (lower is better)
Translates to: GTMLISLGGYHFIGMPLCAGREV*LVPMLG
Trigger: ACCCAACATGGGGACAAGGCAGACTTCCCTACCAGC...ACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp TATCTGTCTCTCCGTGCTCCCTGCTTATCTACTGTGAAGAAATATATGGGAAGACGAAGGTCTGTTTGTTaGCCGGAGTGGCAGCCACTT +
Preference number: 4 (lower is better)
Translates to: YLSLRAPCLSTVKKYMGRRRSVC*PEWQPL
Trigger: AAGTGGCTGCCACTCCGGGCAACAAACAGACCTTCG...TCTTCCCATATATTTCTTCACAGTAGATAAGCAGGGAGCACGGAGAGACAGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCATAAGGGCATGGTCTTaGCAAAGGCTGACTTTCTCC +
Preference number: 4 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFIRAWS*QRLTFS
Trigger: GGAGAAAGTCAGCCTTTGGCAAGACCATGCCCTTAT...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TATGTCTGTAGTGGAGGCAGGCTGTATTTATATGCAATTCACCTCTTTTGTGTCAGTTGCACAAGGCCTTaGCTCGAGGCACCCCATCCA +
Preference number: 4 (lower is better)
Translates to: YVCSGGRLYLYAIHLFCVSCTRP*LEAPHP
Trigger: TGGATGGGGTGCCTCGAGCCAAGGCCTTGTGCAACT...GACACAAAAGAGGTGAATTGCATATAAATACAGCCTGCCTCCACTACAGACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GATGAAAAGTCTATAATACCATACACATCCTTTATCTGTCTCTCCGTGCTCCCTCGCTTTGCCTCTGGATaGGGAGGACATCAGGGACAG +
Preference number: 4 (lower is better)
Translates to: DEKSIIPYTSFICLSVLPRFASG*GGHQGQ
Trigger: CTGTCCCTGATGTCCTCCCCATCCAGAGGCAAAGCG...AGGGAGCACGGAGAGACAGATAAAGGATGTGTATGGTATTATAGACTTTTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TATGTCTGTAGTGGAGGCAGGCTGTATTTATATGCAATTCACCTCTTTTGTGTCTGGTCGCTTTGCCTCTaGATGGGGAGGACATCAGGG +
Preference number: 4 (lower is better)
Translates to: YVCSGGRLYLYAIHLFCVWSLCL*MGRTSG
Trigger: CCCTGATGTCCTCCCCATCCAGAGGCAAAGCGACCA...GACACAAAAGAGGTGAATTGCATATAAATACAGCCTGCCTCCACTACAGACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCATAGGCATGCCCCTCTGTTCTGCAAAGCTACCCTaGGAGGACACAGAGGAGGTG +
Preference number: 4 (lower is better)
Translates to: GTMLISLGGYHFIGMPLCSAKLP*EDTEEV
Trigger: CACCTCCTCTGTGTCCTCCCAGGGTAGCTTTGCAGA...ACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TGGCCAGTTTTAAGCTTCCGTTTCCTTGGCTCTCTAATGGGAACAGTCATAGTTAGGCAGAGTGTTTGGTaGGCGGAGGGCTGTAATTCT +
Preference number: 4 (lower is better)
Translates to: WPVLSFRFLGSLMGTVIVRQSVW*AEGCNS
Trigger: AGAATTACAGCCCTCCGCCCACCAAACACTCTGCCT...AACTATGACTGTTCCCATTAGAGAGCCAAGGAAACGGAAGCTTAAAACTGGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR CCA 90 bp AAGACCAGCCTCGTCTACAGAGTGAGTTCTAGGACAGTCAGGGCTAAAAAGAAATGGCAGCCACTTCGGTaGGCAAATAGAATGGTCATC +
Preference number: 4 (lower is better)
Translates to: KTSLVYRVSSRTVRAKKKWQPLR*ANRMVI
Trigger: GATGACCATTCTATTTGCCCACCGAAGTGGCTGCCA...TTTCTTTTTAGCCCTGACTGTCCTAGAACTCACTCTGTAGACGAGGCTGGTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp ACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGTCGTGTGGCTGAAGCAGTaGACAATAAGGGCATGGTCT +
Preference number: 4 (lower is better)
Translates to: TIQRPARTACRKRLIRPVVWLKQ*TIRAWS
Trigger: AGACCATGCCCTTATTGTCCACTGCTTCAGCCACAC...GACAGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp GTGAGTGTCTTACTTCTCCATCTTAATGGCTGTCCTGACTTCAAGAAGGCAGAGGGAGAACTTTGGCTGTaGCATCGAGCTTTTCAAAGC +
Preference number: 4 (lower is better)
Translates to: VSVLLLHLNGCPDFKKAEGELWL*HRAFQS
Trigger: GCTTTGAAAAGCTCGATGTCACAGCCAAAGTTCTCC...CTCTGCCTTCTTGAAGTCAGGACAGCCATTAAGATGGAGAAGTAAGACACTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp TTAGAAACATGCTGGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAGGCTCCTTGTGGGCCTTaGAAATCCTCTGTAGACATG +
Preference number: 4 (lower is better)
Translates to: LETCWLVVLHAFNPSTREAPCGP*KSSVDM
Trigger: CATGTCTACAGAGGATTTTCAAGGCCCACAAGGAGC...CTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp TTAGAAACATGCTGGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAGTCTGTAGACATGGTTTaGAGAAGGTGTGCTGGCAGG +
Preference number: 4 (lower is better)
Translates to: LETCWLVVLHAFNPSTRESVDMV*RRCAGR
Trigger: CCTGCCAGCACACCTTCTGCAAACCATGTCTACAGA...CTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp CAAAATCCTGAATCCTGGAGGCACAGGTATGGATGCTTTTCTTATTCTTTGGCTATGTGTTGGTCGCTTTaGCTCTGGATGGGGAGGACA +
Preference number: 4 (lower is better)
Translates to: QNPESWRHRYGCFSYSLAMCWSL*LWMGRT
Trigger: TGTCCTCCCCATCCAGAGGCAAAGCGACCAACACAT...AGCCAAAGAATAAGAAAAGCATCCATACCTGTGCCTCCAGGATTCAGGATTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp AAGACCAGCCTCGTCTACAGAGTGAGTTCTAGGACAGTCAGGGCTAAAAAGAAATTATTTGAAAGGTGTTaGTGGGAGCTGGGCACACTG +
Preference number: 4 (lower is better)
Translates to: KTSLVYRVSSRTVRAKKKLFERC*WELGTL
Trigger: CAGTGTGCCCAGCTCCCAGCAACACCTTTCAAATAA...TTTCTTTTTAGCCCTGACTGTCCTAGAACTCACTCTGTAGACGAGGCTGGTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp GGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCATAGGCATGCCCCTCTGTTTGAAGGGTCCACTTTaGCGGGGATCACCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: GTMLISLGGYHFIGMPLCLKGPL*RGSPSA
Trigger: TGCAGAAGGTGATCCCCGGCAAAGTGGACCCTTCAA...ACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp ACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGTCATAAGGGCATGGTCTTaGCAAAGGCTGACTTTCTCC +
Preference number: 4 (lower is better)
Translates to: TIQRPARTACRKRLIRPVIRAWS*QRLTFS
Trigger: GGAGAAAGTCAGCCTTTGGCAAGACCATGCCCTTAT...GACAGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCATAGGCATGCCCCTCTGTTTCTGGGGCTGCTCTTaGCTTTCCTGTTGTCCTGCA +
Preference number: 4 (lower is better)
Translates to: GTMLISLGGYHFIGMPLCFWGCS*LSCCPA
Trigger: TGCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAA...ACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GTGAGTGTCTTACTTCTCCATCTTAATGGCTGTCCTGACTTCAAGAAGGCAGAGAAGGTCAGGCAGTCCTaGTTCTCACTCTTATCCTTG +
Preference number: 4 (lower is better)
Translates to: VSVLLLHLNGCPDFKKAEKVRQS*FSLLSL
Trigger: CAAGGATAAGAGTGAGAACCAGGACTGCCTGACCTT...CTCTGCCTTCTTGAAGTCAGGACAGCCATTAAGATGGAGAAGTAAGACACTCAC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TTAGAAACATGCTGGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAGTGGCAGCCACTTCGGTaGGCAAATAGAATGGTCATC +
Preference number: 4 (lower is better)
Translates to: LETCWLVVLHAFNPSTREWQPLR*ANRMVI
Trigger: GATGACCATTCTATTTGCCCACCGAAGTGGCTGCCA...CTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CAA 72 bp CTGAGAACTCTACTCTTCCCGCCTTTCAGCTCCTTCTaGTCCATATTTGTTTCATGCACCATTCCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: LRTLLFPPFSSF*SIFVSCTIPPL
Trigger: CAGAGGAGGAATGGTGCATGAAACAAATATGGACAAGAAGGAGCTGAAAGGCGGGAAGAGTAGAGTTCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCGAAATCTCACGGTTTTaGCTTGCTTTTCAGTGCCAT +
Preference number: 4 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFEISRF*LAFQCH
Trigger: ATGGCACTGAAAAGCAAGTCAAAACCGTGAGATTTC...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp TTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGGGACAGGTGTCTTGTaGGTGATAACTGATGTCCTT +
Preference number: 4 (lower is better)
Translates to: FTIQRPARTACRKRLIRPGTGVL*VITDVL
Trigger: AAGGACATCAGTTATCACGCACAAGACACCTGTCCC...AGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp TATGTCTGTAGTGGAGGCAGGCTGTATTTATATGCAATTCACCTCTTTTGTGTCTTGAAGGGTCCACTTTaGCGGGGATCACCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: YVCSGGRLYLYAIHLFCVLKGPL*RGSPSA
Trigger: TGCAGAAGGTGATCCCCGGCAAAGTGGACCCTTCAA...GACACAAAAGAGGTGAATTGCATATAAATACAGCCTGCCTCCACTACAGACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTAAGGTCAGGCAGTCCTaGTTCTCACTCTTATCCTTG +
Preference number: 4 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLKVRQS*FSLLSL
Trigger: CAAGGATAAGAGTGAGAACCAGGACTGCCTGACCTT...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATACAGATCCCTTCCTCCTaGACCCTGGGCTCTTTCGGA +
Preference number: 4 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIIQIPSS*TLGSFG
Trigger: TCCGAAAGAGCCCAGGGTCCAGGAGGAAGGGATCTG...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp CAAAATCCTGAATCCTGGAGGCACAGGTATGGATGCTTTTCTTATTCTTTGGCTTGGCCTTCAGGAGAATaGACTGTACGGTTGAGTGTG +
Preference number: 4 (lower is better)
Translates to: QNPESWRHRYGCFSYSLAWPSGE*TVRLSV
Trigger: CACACTCAACCGTACAGTCCATTCTCCTGAAGGCCA...AGCCAAAGAATAAGAAAAGCATCCATACCTGTGCCTCCAGGATTCAGGATTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TATCTGTCTCTCCGTGCTCCCTGCTTATCTACTGTGAAGAAATATATGGGAAGATGGCCTTCAGGAGAATaGACTGTACGGTTGAGTGTG +
Preference number: 4 (lower is better)
Translates to: YLSLRAPCLSTVKKYMGRWPSGE*TVRLSV
Trigger: CACACTCAACCGTACAGTCCATTCTCCTGAAGGCCA...TCTTCCCATATATTTCTTCACAGTAGATAAGCAGGGAGCACGGAGAGACAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GGTAAGAGATGTATGTTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAAGATCCCAGATTGAACTaGTCTCTGCAGGGATCCATT +
Preference number: 4 (lower is better)
Translates to: GKRCMFTIQRPARTACRKDPRLN*SLQGSI
Trigger: AATGGATCCCTGCAGAGACCAGTTCAATCTGGGATC...TTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAACATACATCTCTTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GATGAAAAGTCTATAATACCATACACATCCTTTATCTGTCTCTCCGTGCTCCCTGGTGGGCAAATAGAATaGTCATCTCTCCTCCCGAGG +
Preference number: 4 (lower is better)
Translates to: DEKSIIPYTSFICLSVLPGGQIE*SSLLPR
Trigger: CCTCGGGAGGAGAGATGACCATTCTATTTGCCCACC...AGGGAGCACGGAGAGACAGATAAAGGATGTGTATGGTATTATAGACTTTTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CAA 72 bp TACTCTTCCCGCCTTTCAGCTCCTTCTTGTCCATATTaGTTTCATGCACCATTCCTCCTCTGTTCCTCCTAT +
Preference number: 4 (lower is better)
Translates to: YSSRLSAPSCPY*FHAPFLLCSSY
Trigger: ATAGGAGGAACAGAGGAGGAATGGTGCATGAAACAAATATGGACAAGAAGGAGCTGAAAGGCGGGAAGAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
3UTR CAA 72 bp ATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTaGGGAGGTTATCATTTCATAGGCATGCCCCTCTGT +
Preference number: 4 (lower is better)
Translates to: MEVAILGTMLIS*GGYHFIGMPLC
Trigger: ACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp CTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGGGAGGTTATCATTGGAGAACTTTGGCTGTaGCATCGAGCTTTTCAAAGC +
Preference number: 4 (lower is better)
Translates to: LWRWPSLELCLFLWEVIIGELWL*HRAFQS
Trigger: GCTTTGAAAAGCTCGATGTCACAGCCAAAGTTCTCC...AATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp TATGTCTGTAGTGGAGGCAGGCTGTATTTATATGCAATTCACCTCTTTTGTGTCGCTCCTTGTGGGCCTTaGAAATCCTCTGTAGACATG +
Preference number: 4 (lower is better)
Translates to: YVCSGGRLYLYAIHLFCVAPCGP*KSSVDM
Trigger: CATGTCTACAGAGGATTTTCAAGGCCCACAAGGAGC...GACACAAAAGAGGTGAATTGCATATAAATACAGCCTGCCTCCACTACAGACATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp TGGCCAGTTTTAAGCTTCCGTTTCCTTGGCTCTCTAATGGGAACAGTCATAGTTTGTCTTTCTAGCTGTTaGACTGAAGACTGGGATGAC +
Preference number: 4 (lower is better)
Translates to: WPVLSFRFLGSLMGTVIVCLSSC*TEDWDD
Trigger: GTCATCCCAGTCTTCAGTTCAACAGCTAGAAAGACA...AACTATGACTGTTCCCATTAGAGAGCCAAGGAAACGGAAGCTTAAAACTGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR TCA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATAGTGGGGATCCCAGATTaGACTGGTCTCTGCAGGGAT +
Preference number: 4 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIIVGIPD*TGLCRD
Trigger: ATCCCTGCAGAGACCAGTTCAATCTGGGATCCCCAC...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp GATGAAAAGTCTATAATACCATACACATCCTTTATCTGTCTCTCCGTGCTCCCTGTGTGGCTGAAGCAGTaGACAATAAGGGCATGGTCT +
Preference number: 4 (lower is better)
Translates to: DEKSIIPYTSFICLSVLPVWLKQ*TIRAWS
Trigger: AGACCATGCCCTTATTGTCCACTGCTTCAGCCACAC...AGGGAGCACGGAGAGACAGATAAAGGATGTGTATGGTATTATAGACTTTTCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp TTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGAAACAAGGTCTGTGTaGCTGAAGCAGTGGACAATA +
Preference number: 4 (lower is better)
Translates to: FTIQRPARTACRKRLIRPETRSV*LKQWTI
Trigger: TATTGTCCACTGCTTCAGCCACACAGACCTTGTTTC...AGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp ACGGCAGAATCTGGTCCTTTTCCCACCTTCTGTCAGTGTAAACATTGCTTCAACTACAAACATGTTATTTaGAAGGTGTTGCTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: TAESGPFPTFCQCKHCFNYKHVI*KVLLGA
Trigger: AGCTCCCAGCAACACCTTTCAAATAACATGTTTGTA...GTTGAAGCAATGTTTACACTGACAGAAGGTGGGAAAAGGACCAGATTCTGCCGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp ACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGTCTTCAGTGCCATTCTTTaGATTTTCTGGTTTCACGAG +
Preference number: 4 (lower is better)
Translates to: TIQRPARTACRKRLIRPVFSAIL*IFWFHE
Trigger: CTCGTGAAACCAGAAAATTCAAAGAATGGCACTGAA...GACAGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATAGGTGGGCAAATAGAATaGTCATCTCTCCTCCCGAGG +
Preference number: 4 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIIGGQIE*SSLLPR
Trigger: CCTCGGGAGGAGAGATGACCATTCTATTTGCCCACC...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CCA 90 bp CTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGGGAGGTTATCATTGAAACAAGGTCTGTGTaGCTGAAGCAGTGGACAATA +
Preference number: 4 (lower is better)
Translates to: LWRWPSLELCLFLWEVIIETRSV*LKQWTI
Trigger: TATTGTCCACTGCTTCAGCCACACAGACCTTGTTTC...AATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp GATGAAAAGTCTATAATACCATACACATCCTTTATCTGTCTCTCCGTGCTCCCTTGTCTTTCTAGCTGTTaGACTGAAGACTGGGATGAC +
Preference number: 4 (lower is better)
Translates to: DEKSIIPYTSFICLSVLPCLSSC*TEDWDD
Trigger: GTCATCCCAGTCTTCAGTTCAACAGCTAGAAAGACA...AGGGAGCACGGAGAGACAGATAAAGGATGTGTATGGTATTATAGACTTTTCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp ATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTTCAGTGCCATTCTTTaGATTTTCTGGTTTCACGAG +
Preference number: 4 (lower is better)
Translates to: MEGLVLWRWPSLELCLFLFSAIL*IFWFHE
Trigger: CTCGTGAAACCAGAAAATTCAAAGAATGGCACTGAA...AAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp TTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTCTCACGGTTTTGACTTaGTTTTCAGTGCCATTCTTT +
Preference number: 4 (lower is better)
Translates to: FTIQRPARTACRKRLIRPLTVLT*FSVPFF
Trigger: AAAGAATGGCACTGAAAAGCAAGTCAAAACCGTGAG...AGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR GCA 90 bp CTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGGGAGGTTATCATTCTCACGGTTTTGACTTaGTTTTCAGTGCCATTCTTT +
Preference number: 4 (lower is better)
Translates to: LWRWPSLELCLFLWEVIILTVLT*FSVPFF
Trigger: AAAGAATGGCACTGAAAAGCAAGTCAAAACCGTGAG...AATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR TCA 90 bp TTACCCTATTTATGCAAAGTGATACCTTCCTGGTTGAGTAAGATAGCCTTCCTATACAAACATGTTATTTaGAAGGTGTTGCTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: LPYLCKVIPSWLSKIAFLYKHVI*KVLLGA
Trigger: AGCTCCCAGCAACACCTTTCAAATAACATGTTTGTA...TAGGAAGGCTATCTTACTCAACCAGGAAGGTATCACTTTGCATAAATAGGGTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR CAA 90 bp CAGAGCTGTCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACAGCAGAGTGGGGGTGGTaGGGGCAGCTGTTTGATGAC +
Preference number: 5 (lower is better)
Translates to: QSCLVRRAASHLSLTLFTAEWGW*GQLFDD
Trigger: GTCATCAAACAGCTGCCCCAACCACCCCCACTCTGC...TGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGACAGCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 90 bp CCAGCAAACGCACGAGCAACAGGTTGGCTGGCAGAGCCTCGATGCTaGAGAACACCAGAGTCCTGCATTCCGGGCACCTCAGCTCCTTGT +
Preference number: 5 (lower is better)
Translates to: PANARATGWLAEPRC*RTPESCIPGTSAPC
Trigger: ACAAGGAGCTGAGGTGCCCGGAATGCAGGACTCTGGTGTTCTGCAGCATCGAGGCTCTGCCAGCCAACCTGTTGCTCGTGCGTTTGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 90 bp TCCTGGACCCTGGGCTCTTTCGGAGCGAGGATGTGTTGGTCGCTTTaGCTCTGGATGGGGAGGACATCAGGGACAGGTGTCTTGTGCGTG +
Preference number: 5 (lower is better)
Translates to: SWTLGSFGARMCWSL*LWMGRTSGTGVLCV
Trigger: CACGCACAAGACACCTGTCCCTGATGTCCTCCCCATCCAGAGGCAAAGCGACCAACACATCCTCGCTCCGAAAGAGCCCAGGGTCCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 90 bp GAGACTGCTTCATGCTGGGACCCCTTCAAGGTGGCTGGATGGTCGTaGTTTCCAGAGGTGGGACTGGAGGCAGAGTGTTTGGTGGGCGGA +
Preference number: 5 (lower is better)
Translates to: ETASCWDPFKVAGWS*FPEVGLEAECLVGG
Trigger: TCCGCCCACCAAACACTCTGCCTCCAGTCCCACCTCTGGAAAGCACGACCATCCAGCCACCTTGAAGGGGTCCCAGCATGAAGCAGTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp TCCGGAACGCACACCATCCAGCAAACGCACGAGCAACAGGTTGGCTaGCAGAGCCTCGATGCTGCAGAACACCAGAGTCCTGCATTCCGG +
Preference number: 5 (lower is better)
Translates to: SGTHTIQQTHEQQVG*QSLDAAEHQSPAFR
Trigger: CCGGAATGCAGGACTCTGGTGTTCTGCAGCATCGAGGCTCTGCCAGCCAACCTGTTGCTCGTGCGTTTGCTGGATGGTGTGCGTTCCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp ATCCCTTCCTCCTGGACCCTGGGCTCTTTCGGAGCGAGGATGTGTTaGTCGCTTTGCCTCTGGATGGGGAGGACATCAGGGACAGGTGTC +
Preference number: 5 (lower is better)
Translates to: IPSSWTLGSFGARMC*SLCLWMGRTSGTGV
Trigger: GACACCTGTCCCTGATGTCCTCCCCATCCAGAGGCAAAGCGACCAACACATCCTCGCTCCGAAAGAGCCCAGGGTCCAGGAGGAAGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp CCCGAGGAGACTGCTTCATGCTGGGACCCCTTCAAGGTGGCTGGATaGTCGTGCTTTCCAGAGGTGGGACTGGAGGCAGAGTGTTTGGTG +
Preference number: 5 (lower is better)
Translates to: PEETASCWDPFKVAG*SCFPEVGLEAECLV
Trigger: CACCAAACACTCTGCCTCCAGTCCCACCTCTGGAAAGCACGACCATCCAGCCACCTTGAAGGGGTCCCAGCATGAAGCAGTCTCCTCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp TCTCTCCTCCCGAGGAGACTGCTTCATGCTGGGACCCCTTCAAGGTaGCTGGATGGTCGTGCTTTCCAGAGGTGGGACTGGAGGCAGAGT +
Preference number: 5 (lower is better)
Translates to: SLLPRRLLHAGTPSR*LDGRAFQRWDWRQS
Trigger: ACTCTGCCTCCAGTCCCACCTCTGGAAAGCACGACCATCCAGCCACCTTGAAGGGGTCCCAGCATGAAGCAGTCTCCTCGGGAGGAGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp CCAGTTCGTCCAGTGAGTAAGGAGAGGCCCTTCAGCCAGCCATCCTaGTACTTGCCCAGAACCCTGATGCCTTCTCCCTTCTGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: PVRPVSKERPFSQPS*YLPRTLMPSPFCRS
Trigger: GGACCTGCAGAAGGGAGAAGGCATCAGGGTTCTGGGCAAGTACCAGGATGGCTGGCTGAAGGGCCTCTCCTTACTCACTGGACGAACTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp CATGCTGCTCCGCACTTTCCTAAGAGACCCTTGTCCAGAAGACCCTaGGCCAGGTGTGCTCCTCGAAGGGTTAACTACGGCAGTGGGCAC +
Preference number: 5 (lower is better)
Translates to: HAAPHFPKRPLSRRP*ARCAPRRVNYGSGH
Trigger: GTGCCCACTGCCGTAGTTAACCCTTCGAGGAGCACACCTGGCCCAGGGTCTTCTGGACAAGGGTCTCTTAGGAAAGTGCGGAGCAGCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp TCCTCCCGAGGAGACTGCTTCATGCTGGGACCCCTTCAAGGTGGCTaGATGGTCGTGCTTTCCAGAGGTGGGACTGGAGGCAGAGTGTTT +
Preference number: 5 (lower is better)
Translates to: SSRGDCFMLGPLQGG*MVVLSRGGTGGRVF
Trigger: AAACACTCTGCCTCCAGTCCCACCTCTGGAAAGCACGACCATCCAGCCACCTTGAAGGGGTCCCAGCATGAAGCAGTCTCCTCGGGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp CTGTTTGTTGCCCGGAGTGGCAGCCACTTCGGTGGGCAAATAGAATaGTCATCTCTCCTCCCGAGGAGACTGCTTCATGCTGGGACCCCT +
Preference number: 5 (lower is better)
Translates to: LFVARSGSHFGGQIE*SSLLPRRLLHAGTP
Trigger: AGGGGTCCCAGCATGAAGCAGTCTCCTCGGGAGGAGAGATGACCATTCTATTTGCCCACCGAAGTGGCTGCCACTCCGGGCAACAAACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp CAGAGCTGTCTGGTTCGCAGAGCTGCCTCCCACCTCTCCCTCACCCTGTTCACATGGCAGGGGAGAACTTaGGCTGTGACATCGAGCTTT +
Preference number: 5 (lower is better)
Translates to: QSCLVRRAASHLSLTLFTWQGRT*AVTSSF
Trigger: AAAGCTCGATGTCACAGCCAAAGTTCTCCCCTGCCA...TGTGAACAGGGTGAGGGAGAGGTGGGAGGCAGCTCTGCGAACCAGACAGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 90 bp CTAGCCTGTAGACTTCTGGGGCTGCTCTTGGCTTTCCTGTTGTCCTaGAAGGTCAGTATCCGAGGCCTTCGGAAGGAGCCTCCTTTCCAC +
Preference number: 5 (lower is better)
Translates to: LACRLLGLLLAFLLS*KVSIRGLRKEPPFH
Trigger: GTGGAAAGGAGGCTCCTTCCGAAGGCCTCGGATACTGACCTTGCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAAGTCTACAGGCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 90 bp AGGCTGAGAACTGCTGACCTGTCCTGTAGAGCTGGTAGGGAAGTCTaGCTTGTCCCCATGTTGGGTGAGCACAGAGGGGCTGTTAGAGCT +
Preference number: 5 (lower is better)
Translates to: RLRTADLSCRAGREV*LVPMLGEHRGAVRA
Trigger: AGCTCTAACAGCCCCTCTGTGCTCACCCAACATGGGGACAAGGCAGACTTCCCTACCAGCTCTACAGGACAGGTCAGCAGTTCTCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp ACAGAGCTGGCCGGGAAGATCCCGCTGACGCCATTAATCTCCCCCTaGTACCAGTTCTCATCAAGCTGTCTCCGAAGGAGGATGACATCG +
Preference number: 5 (lower is better)
Translates to: TELAGKIPLTPLISP*YQFSSSCLRRRMTS
Trigger: CGATGTCATCCTCCTTCGGAGACAGCTTGATGAGAACTGGTACCAGGGGGAGATTAATGGCGTCAGCGGGATCTTCCCGGCCAGCTCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp ACCCTGGGCTCTTTCGGAGCGAGGATGTGTTGGTCGCTTTGCCTCTaGATGGGGAGGACATCAGGGACAGGTGTCTTGTGCGTGATAACT +
Preference number: 5 (lower is better)
Translates to: TLGSFGARMCWSLCL*MGRTSGTGVLCVIT
Trigger: AGTTATCACGCACAAGACACCTGTCCCTGATGTCCTCCCCATCCAGAGGCAAAGCGACCAACACATCCTCGCTCCGAAAGAGCCCAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp TGGTTTCACGAGGATGGAGGGTGGCGCAGATGCAGGCGGCTTGGGTaGCGGTTCACTCTTGATGGGCGTTTCTTTGCCTTCCATGATGAT +
Preference number: 5 (lower is better)
Translates to: WFHEDGGWRRCRRLG*RFTLDGRFFAFHDD
Trigger: ATCATCATGGAAGGCAAAGAAACGCCCATCAAGAGTGAACCGCCACCCAAGCCGCCTGCATCTGCGCCACCCTCCATCCTCGTGAAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 90 bp TGGACTGTACGGTTGAGTGTGTTCAAAGCTGTAGTCATGGAGAACTaGCCAGATCCCTTCCTCCTGGACCCTGGGCTCTTTCGGAGCGAG +
Preference number: 5 (lower is better)
Translates to: WTVRLSVFKAVVMEN*PDPFLLDPGLFRSE
Trigger: CTCGCTCCGAAAGAGCCCAGGGTCCAGGAGGAAGGGATCTGGGCAGTTCTCCATGACTACAGCTTTGAACACACTCAACCGTACAGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp GCAAATAGAATGGTCATCTCTCCTCCCGAGGAGACTGCTTCATGCTaGGACCCCTTCAAGGTGGCTGGATGGTCGTGCTTTCCAGAGGTG +
Preference number: 5 (lower is better)
Translates to: ANRMVISPPEETASC*DPFKVAGWSCFPEV
Trigger: CACCTCTGGAAAGCACGACCATCCAGCCACCTTGAAGGGGTCCCAGCATGAAGCAGTCTCCTCGGGAGGAGAGATGACCATTCTATTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 90 bp GGCATGGTCTTGCCAAAGGCTGACTTTCTCCGAAGGTCTGTTTGTTaGCCGGAGTGGCAGCCACTTCGGTGGGCAAATAGAATGGTCATC +
Preference number: 5 (lower is better)
Translates to: GMVLPKADFLRRSVC*PEWQPLRWANRMVI
Trigger: GATGACCATTCTATTTGCCCACCGAAGTGGCTGCCACTCCGGGCAACAAACAGACCTTCGGAGAAAGTCAGCCTTTGGCAAGACCATGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp TTGCCAAAGGCTGACTTTCTCCGAAGGTCTGTTTGTTGCCCGGAGTaGCAGCCACTTCGGTGGGCAAATAGAATGGTCATCTCTCCTCCC +
Preference number: 5 (lower is better)
Translates to: LPKADFLRRSVCCPE*QPLRWANRMVISPP
Trigger: GGGAGGAGAGATGACCATTCTATTTGCCCACCGAAGTGGCTGCCACTCCGGGCAACAAACAGACCTTCGGAGAAAGTCAGCCTTTGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GTGGTGAGAAGAAAGGGGGATGACGATGAGGTCAAAGAGGCCCTGAGAGCAATTCTTCTGGGGCTGCTCTaGGCTTTCCTGTTGTCCTGC +
Preference number: 5 (lower is better)
Translates to: VVRRKGDDDEVKEALRAILLGLL*AFLLSC
Trigger: GCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAAG...AATTGCTCTCAGGGCCTCTTTGACCTCATCGTCATCCCCCTTTCTTCTCACCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GTGGTGAGAAGAAAGGGGGATGACGATGAGGTCAAAGAGGCCCTGAGAGCAATTGATGTGTTGGTCGCTTaGCCTCTGGATGGGGAGGAC +
Preference number: 5 (lower is better)
Translates to: VVRRKGDDDEVKEALRAIDVLVA*PLDGED
Trigger: GTCCTCCCCATCCAGAGGCAAAGCGACCAACACATC...AATTGCTCTCAGGGCCTCTTTGACCTCATCGTCATCCCCCTTTCTTCTCACCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS TCA 90 bp CTGGATGGGGAGGACATCAGGGACAGGTGTCTTGTGCGTGATAACTaGTGTCCTTTGTTCTCTAGGAGGTGTCTTGCCGAGACGTTTGGC +
Preference number: 5 (lower is better)
Translates to: LDGEDIRDRCLVRDN*CPLFSRRCLAETFG
Trigger: GCCAAACGTCTCGGCAAGACACCTCCTAGAGAACAAAGGACATCAGTTATCACGCACAAGACACCTGTCCCTGATGTCCTCCCCATCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 90 bp TCGCTTTGCCTCTGGATGGGGAGGACATCAGGGACAGGTGTCTTGTaGGTGATAACTGATGTCCTTTGTTCTCTAGGAGGTGTCTTGCCG +
Preference number: 5 (lower is better)
Translates to: SLCLWMGRTSGTGVL*VITDVLCSLGGVLP
Trigger: CGGCAAGACACCTCCTAGAGAACAAAGGACATCAGTTATCACGCACAAGACACCTGTCCCTGATGTCCTCCCCATCCAGAGGCAAAGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 90 bp TTAACTACGGCAGTGGGCACAAAGACAGATTTGAAGGGTCCACTTTaGCGGGGATCACCTTCTGCAAAGCTACCCTGGGAGGACACAGAG +
Preference number: 5 (lower is better)
Translates to: LTTAVGTKTDLKGPL*RGSPSAKLPWEDTE
Trigger: CTCTGTGTCCTCCCAGGGTAGCTTTGCAGAAGGTGATCCCCGGCAAAGTGGACCCTTCAAATCTGTCTTTGTGCCCACTGCCGTAGTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp AAGACCAGCCTCGTCTACAGAGTGAGTTCTAGGACAGTCAGGGCTAAAAAGAAACGCACGAGCAACAGGTaGGCTGGCAGAGCCTCGATG +
Preference number: 5 (lower is better)
Translates to: KTSLVYRVSSRTVRAKKKRTSNR*AGRASM
Trigger: CATCGAGGCTCTGCCAGCCAACCTGTTGCTCGTGCG...TTTCTTTTTAGCCCTGACTGTCCTAGAACTCACTCTGTAGACGAGGCTGGTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp TCTCTAGGAGGTGTCTTGCCGAGACGTTTGGCTCTACAAACAAGATaGGGAAGATGCCCACTTTATCTCCGAGCTTTCCCTCTGCCCAGT +
Preference number: 5 (lower is better)
Translates to: SLGGVLPRRLALQTR*GRCPLYLRAFPLPS
Trigger: ACTGGGCAGAGGGAAAGCTCGGAGATAAAGTGGGCATCTTCCCCATCTTGTTTGTAGAGCCAAACGTCTCGGCAAGACACCTCCTAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS CCA 90 bp GGGCTGTTAGAGCTGATGAGCATCGGGGTGCTGATTTCCACCATCTaGTGGCCTTCAGGAGAATGGACTGTACGGTTGAGTGTGTTCAAA +
Preference number: 5 (lower is better)
Translates to: GLLELMSIGVLISTI*WPSGEWTVRLSVFK
Trigger: TTTGAACACACTCAACCGTACAGTCCATTCTCCTGAAGGCCACCAGATGGTGGAAATCAGCACCCCGATGCTCATCAGCTCTAACAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GTGAGTGTCTTACTTCTCCATCTTAATGGCTGTCCTGACTTCAAGAAGGCAGAGTGCCTTGTCCCCATGTaGGGTGAGCACAGAGGGGCT +
Preference number: 5 (lower is better)
Translates to: VSVLLLHLNGCPDFKKAECLVPM*GEHRGA
Trigger: AGCCCCTCTGTGCTCACCCAACATGGGGACAAGGCA...CTCTGCCTTCTTGAAGTCAGGACAGCCATTAAGATGGAGAAGTAAGACACTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp AGCATCGGGGTGCTGATTTCCACCATCTGGTGGCCTTCAGGAGAATaGACTGTACGGTTGAGTGTGTTCAAAGCTGTAGTCATGGAGAAC +
Preference number: 5 (lower is better)
Translates to: SIGVLISTIWWPSGE*TVRLSVFKAVVMEN
Trigger: GTTCTCCATGACTACAGCTTTGAACACACTCAACCGTACAGTCCATTCTCCTGAAGGCCACCAGATGGTGGAAATCAGCACCCCGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp CTGTTAGAGCTGATGAGCATCGGGGTGCTGATTTCCACCATCTGGTaGCCTTCAGGAGAATGGACTGTACGGTTGAGTGTGTTCAAAGCT +
Preference number: 5 (lower is better)
Translates to: LLELMSIGVLISTIW*PSGEWTVRLSVFKA
Trigger: AGCTTTGAACACACTCAACCGTACAGTCCATTCTCCTGAAGGCCACCAGATGGTGGAAATCAGCACCCCGATGCTCATCAGCTCTAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 90 bp TGGGAAACAAGGTCTGTGTGGCTGAAGCAGTGGACAATAAGGGCATaGTCTTGCCAAAGGCTGACTTTCTCCGAAGGTCTGTTTGTTGCC +
Preference number: 5 (lower is better)
Translates to: WETRSVWLKQWTIRA*SCQRLTFSEGLFVA
Trigger: GGCAACAAACAGACCTTCGGAGAAAGTCAGCCTTTGGCAAGACCATGCCCTTATTGTCCACTGCTTCAGCCACACAGACCTTGTTTCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCTTTCCTAAGAGACCCTaGTCCAGAAGACCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFFPKRP*SRRPWA
Trigger: GGCCCAGGGTCTTCTGGACAAGGGTCTCTTAGGAAA...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp TCAGCATCAGGCTCTCTGGCTTTGGAGTCAGCAAACTCAGAAAGTCACTCTCTTTTTCCTAAGAGACCCTaGTCCAGAAGACCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: SASGSLALESANSESHSLFPKRP*SRRPWA
Trigger: GGCCCAGGGTCTTCTGGACAAGGGTCTCTTAGGAAA...AAGAGAGTGACTTTCTGAGTTTGCTGACTCCAAAGCCAGAGAGCCTGATGCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GAATGGATGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTAGGTGGCGGTTCACTCTaGATGGGCGTTTCTTTGCCT +
Preference number: 5 (lower is better)
Translates to: EWMEGLVLWRWPSLELCLGGGSL*MGVSLP
Trigger: AGGCAAAGAAACGCCCATCAAGAGTGAACCGCCACC...TAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCATCCATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp TGGCCAGTTTTAAGCTTCCGTTTCCTTGGCTCTCTAATGGGAACAGTCATAGTTCCGAAGGTCTGTTTGTaGCCCGGAGTGGCAGCCACT +
Preference number: 5 (lower is better)
Translates to: WPVLSFRFLGSLMGTVIVPKVCL*PGVAAT
Trigger: AGTGGCTGCCACTCCGGGCAACAAACAGACCTTCGG...AACTATGACTGTTCCCATTAGAGAGCCAAGGAAACGGAAGCTTAAAACTGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR CAA 90 bp GGATGGAGTCATCTAGTTTTGACCCTTTCTCCACGGCAGAATCTGGTCCTTTTCCTCTGTAGACATGGTTaGCAGAAGGTGTGCTGGCAG +
Preference number: 5 (lower is better)
Translates to: GWSHLVLTLSPRQNLVLFLCRHG*QKVCWQ
Trigger: CTGCCAGCACACCTTCTGCAAACCATGTCTACAGAG...GAAAAGGACCAGATTCTGCCGTGGAGAAAGGGTCAAAACTAGATGACTCCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp AAGACCAGCCTCGTCTACAGAGTGAGTTCTAGGACAGTCAGGGCTAAAAAGAAAGGTTGGGGCAGCTGTTaGATGACTTCCACAGAGCTG +
Preference number: 5 (lower is better)
Translates to: KTSLVYRVSSRTVRAKKKGWGSC*MTSTEL
Trigger: CAGCTCTGTGGAAGTCATCAAACAGCTGCCCCAACC...TTTCTTTTTAGCCCTGACTGTCCTAGAACTCACTCTGTAGACGAGGCTGGTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp TTAGAAACATGCTGGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAGGATGTGTTGGTCGCTTaGCCTCTGGATGGGGAGGAC +
Preference number: 5 (lower is better)
Translates to: LETCWLVVLHAFNPSTREDVLVA*PLDGED
Trigger: GTCCTCCCCATCCAGAGGCAAAGCGACCAACACATC...CTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACTGCCTTGTCCCCATGTaGGGTGAGCACAGAGGGGCT +
Preference number: 5 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYCLVPM*GEHRGA
Trigger: AGCCCCTCTGTGCTCACCCAACATGGGGACAAGGCA...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GAACAAAATATACTGGGTTACAGGCAGAATAGAGATCTAAACCCGCTGCCTGGTGTAGGGAAGTCTGCCTaGTCCCCATGTTGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: EQNILGYRQNRDLNPLPGVGKSA*SPCWVS
Trigger: GCTCACCCAACATGGGGACAAGGCAGACTTCCCTAC...ACCAGGCAGCGGGTTTAGATCTCTATTCTGCCTGTAACCCAGTATATTTTGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GGTAAGAGATGTATGTTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAAGTAGGGAAGTCTGCCTaGTCCCCATGTTGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: GKRCMFTIQRPARTACRKVGKSA*SPCWVS
Trigger: GCTCACCCAACATGGGGACAAGGCAGACTTCCCTAC...TTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAACATACATCTCTTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp ACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGTCTTTGAAGGGTCCACTTaGCCGGGGATCACCTTCTGC +
Preference number: 5 (lower is better)
Translates to: TIQRPARTACRKRLIRPVFEGST*PGITFC
Trigger: GCAGAAGGTGATCCCCGGCAAAGTGGACCCTTCAAA...GACAGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp AAGACCAGCCTCGTCTACAGAGTGAGTTCTAGGACAGTCAGGGCTAAAAAGAAAAGTGGGGATCCCAGATaGAACTGGTCTCTGCAGGGA +
Preference number: 5 (lower is better)
Translates to: KTSLVYRVSSRTVRAKKKSGDPR*NWSLQG
Trigger: TCCCTGCAGAGACCAGTTCAATCTGGGATCCCCACT...TTTCTTTTTAGCCCTGACTGTCCTAGAACTCACTCTGTAGACGAGGCTGGTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp TGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGTCTTGCTACCTCTGTaGATGCAGGTCAGGGCAGGC +
Preference number: 5 (lower is better)
Translates to: WKVWCYGGGHPWNYAYFFVLLPL*MQVRAG
Trigger: GCCTGCCCTGACCTGCATCAACAGAGGTAGCAAGAC...AAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GGTAAGAGATGTATGTTCACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAAGTCTTGCTACCTCTGTaGATGCAGGTCAGGGCAGGC +
Preference number: 5 (lower is better)
Translates to: GKRCMFTIQRPARTACRKVLLPL*MQVRAG
Trigger: GCCTGCCCTGACCTGCATCAACAGAGGTAGCAAGAC...TTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGTGAACATACATCTCTTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACCCGAAGGTCTGTTTGTaGCCCGGAGTGGCAGCCACT +
Preference number: 5 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYPKVCL*PGVAAT
Trigger: AGTGGCTGCCACTCCGGGCAACAAACAGACCTTCGG...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACTCTCCGAAGGTCTGTTaGTTGCCCGGAGTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYSPKVC*LPGVAA
Trigger: GGCTGCCACTCCGGGCAACAAACAGACCTTCGGAGA...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GTGAGTGTCTTACTTCTCCATCTTAATGGCTGTCCTGACTTCAAGAAGGCAGAGTGGCAGGGGAGAACTTaGGCTGTGACATCGAGCTTT +
Preference number: 5 (lower is better)
Translates to: VSVLLLHLNGCPDFKKAEWQGRT*AVTSSF
Trigger: AAAGCTCGATGTCACAGCCAAAGTTCTCCCCTGCCA...CTCTGCCTTCTTGAAGTCAGGACAGCCATTAAGATGGAGAAGTAAGACACTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp ACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGTCCTCTGTAGACATGGTTaGCAGAAGGTGTGCTGGCAG +
Preference number: 5 (lower is better)
Translates to: TIQRPARTACRKRLIRPVLCRHG*QKVCWQ
Trigger: CTGCCAGCACACCTTCTGCAAACCATGTCTACAGAG...GACAGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp CTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGGGAGGTTATCATTCTTCTGGGGCTGCTCTaGGCTTTCCTGTTGTCCTGC +
Preference number: 5 (lower is better)
Translates to: LWRWPSLELCLFLWEVIILLGLL*AFLLSC
Trigger: GCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAAG...AATGATAACCTCCCAAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GAACAAAATATACTGGGTTACAGGCAGAATAGAGATCTAAACCCGCTGCCTGGTGGTTGGGGCAGCTGTTaGATGACTTCCACAGAGCTG +
Preference number: 5 (lower is better)
Translates to: EQNILGYRQNRDLNPLPGGWGSC*MTSTEL
Trigger: CAGCTCTGTGGAAGTCATCAAACAGCTGCCCCAACC...ACCAGGCAGCGGGTTTAGATCTCTATTCTGCCTGTAACCCAGTATATTTTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS TCA 90 bp AGTGGGGCTCCGGGAATCAGGAAAACTAGATGTCTTTCTAGCTGTTaGACTGAAGACTGGGATGACATAGTCGCTTGGAAAGATGCCAGT +
Preference number: 5 (lower is better)
Translates to: SGAPGIRKTRCLSSC*TEDWDDIVAWKDAS
Trigger: ACTGGCATCTTTCCAAGCGACTATGTCATCCCAGTCTTCAGTTCAACAGCTAGAAAGACATCTAGTTTTCCTGATTCCCGGAGCCCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp TCAGCATCAGGCTCTCTGGCTTTGGAGTCAGCAAACTCAGAAAGTCACTCTCTTAGCTCCTTGTGGGCCTaGAAAATCCTCTGTAGACAT +
Preference number: 5 (lower is better)
Translates to: SASGSLALESANSESHSLSSLWA*KILCRH
Trigger: ATGTCTACAGAGGATTTTCAAGGCCCACAAGGAGCT...AAGAGAGTGACTTTCTGAGTTTGCTGACTCCAAAGCCAGAGAGCCTGATGCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATACGCACGAGCAACAGGTaGGCTGGCAGAGCCTCGATG +
Preference number: 5 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIIRTSNR*AGRASM
Trigger: CATCGAGGCTCTGCCAGCCAACCTGTTGCTCGTGCG...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GTGGTGAGAAGAAAGGGGGATGACGATGAGGTCAAAGAGGCCCTGAGAGCAATTTTCTCACTCTTATCCTaGTCTCGAAGGTCAAAGTTG +
Preference number: 5 (lower is better)
Translates to: VVRRKGDDDEVKEALRAIFSLLS*SRRSKL
Trigger: CAACTTTGACCTTCGAGACAAGGATAAGAGTGAGAA...AATTGCTCTCAGGGCCTCTTTGACCTCATCGTCATCCCCCTTTCTTCTCACCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp TGGAAGGTTTGGTGCTATGGAGGTGGCCATCCTTGGAACTATGCTTATTTCTTTGTGATGACATCATCCTaGAGGAAGGTCAGGCAGTCC +
Preference number: 5 (lower is better)
Translates to: WKVWCYGGGHPWNYAYFFVMTSS*RKVRQS
Trigger: GGACTGCCTGACCTTCCTCAAGGATGATGTCATCAC...AAAGAAATAAGCATAGTTCCAAGGATGGCCACCTCCATAGCACCAAACCTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR CAA 90 bp ACGGCAGAATCTGGTCCTTTTCCCACCTTCTGTCAGTGTAAACATTGCTTCAACGTCTTGCCGAGACGTTaGGCTCTACAAACAAGATGG +
Preference number: 5 (lower is better)
Translates to: TAESGPFPTFCQCKHCFNVLPRR*ALQTRW
Trigger: CCATCTTGTTTGTAGAGCCAAACGTCTCGGCAAGAC...GTTGAAGCAATGTTTACACTGACAGAAGGTGGGAAAAGGACCAGATTCTGCCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS-3UTR CAA 90 bp CAAAATCCTGAATCCTGGAGGCACAGGTATGGATGCTTTTCTTATTCTTTGGCTTTTGAAGGGTCCACTTaGCCGGGGATCACCTTCTGC +
Preference number: 5 (lower is better)
Translates to: QNPESWRHRYGCFSYSLAFEGST*PGITFC
Trigger: GCAGAAGGTGATCCCCGGCAAAGTGGACCCTTCAAA...AGCCAAAGAATAAGAAAAGCATCCATACCTGTGCCTCCAGGATTCAGGATTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GAACAAAATATACTGGGTTACAGGCAGAATAGAGATCTAAACCCGCTGCCTGGTGGCACAAAGACAGATTaGAAGGGTCCACTTTGCCGG +
Preference number: 5 (lower is better)
Translates to: EQNILGYRQNRDLNPLPGGTKTD*KGPLCR
Trigger: CCGGCAAAGTGGACCCTTCAAATCTGTCTTTGTGCC...ACCAGGCAGCGGGTTTAGATCTCTATTCTGCCTGTAACCCAGTATATTTTGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp GGAACTATGCTTATTTCTTTGGGAGGTTATCATTTCATAGGCATGCCCCTCTGTAGTGGGGATCCCAGATaGAACTGGTCTCTGCAGGGA +
Preference number: 5 (lower is better)
Translates to: GTMLISLGGYHFIGMPLCSGDPR*NWSLQG
Trigger: TCCCTGCAGAGACCAGTTCAATCTGGGATCCCCACT...ACAGAGGGGCATGCCTATGAAATGATAACCTCCCAAAGAAATAAGCATAGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATATCTCCGAAGGTCTGTTaGTTGCCCGGAGTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIISPKVC*LPGVAA
Trigger: GGCTGCCACTCCGGGCAACAAACAGACCTTCGGAGA...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp TTAGAAACATGCTGGTTGGTTGTGCTGCATGCTTTTAATCCCAGTACTAGGGAGAATAAGGGCATGGTCTaGCCAAAGGCTGACTTTCTC +
Preference number: 5 (lower is better)
Translates to: LETCWLVVLHAFNPSTRENKGMV*PKADFL
Trigger: GAGAAAGTCAGCCTTTGGCAAGACCATGCCCTTATT...CTCCCTAGTACTGGGATTAAAAGCATGCAGCACAACCAACCAGCATGTTTCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATAGGTGGCGGTTCACTCTaGATGGGCGTTTCTTTGCCT +
Preference number: 5 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIIGGGSL*MGVSLP
Trigger: AGGCAAAGAAACGCCCATCAAGAGTGAACCGCCACC...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp CAAAATCCTGAATCCTGGAGGCACAGGTATGGATGCTTTTCTTATTCTTTGGCTAATAAGGGCATGGTCTaGCCAAAGGCTGACTTTCTC +
Preference number: 5 (lower is better)
Translates to: QNPESWRHRYGCFSYSLANKGMV*PKADFL
Trigger: GAGAAAGTCAGCCTTTGGCAAGACCATGCCCTTATT...AGCCAAAGAATAAGAAAAGCATCCATACCTGTGCCTCCAGGATTCAGGATTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATAGGCACAAAGACAGATTaGAAGGGTCCACTTTGCCGG +
Preference number: 5 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIIGTKTD*KGPLCR
Trigger: CCGGCAAAGTGGACCCTTCAAATCTGTCTTTGTGCC...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp ATTTCATGGCATACACATGAACCACTATCTCACACAAGCGCAGGAACAACATACTTCTCACTCTTATCCTaGTCTCGAAGGTCAAAGTTG +
Preference number: 5 (lower is better)
Translates to: ISWHTHEPLSHTSAGTTYFSLLS*SRRSKL
Trigger: CAACTTTGACCTTCGAGACAAGGATAAGAGTGAGAA...GTATGTTGTTCCTGCGCTTGTGTGAGATAGTGGTTCATGTGTATGCCATGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp ACAATCCAGAGACCTGCAAGAACTGCCTGTAGGAAACGTCTAATTAGACCTGTCTTTCAGTGCCATTCTTaGAATTTTCTGGTTTCACGA +
Preference number: 5 (lower is better)
Translates to: TIQRPARTACRKRLIRPVFQCHS*NFLVSR
Trigger: TCGTGAAACCAGAAAATTCAAAGAATGGCACTGAAA...GACAGGTCTAATTAGACGTTTCCTACAGGCAGTTCTTGCAGGTCTCTGGATTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS-3UTR CAA 90 bp AAGTGCCCTCCAAGCACACTTTGTTTTGAGAAGAAGGATGAAAAGTCTATAATATTTCAGTGCCATTCTTaGAATTTTCTGGTTTCACGA +
Preference number: 5 (lower is better)
Translates to: KCPPSTLCFEKKDEKSIIFQCHS*NFLVSR
Trigger: TCGTGAAACCAGAAAATTCAAAGAATGGCACTGAAA...TATTATAGACTTTTCATCCTTCTTCTCAAAACAAAGTGTGCTTGGAGGGCACTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 72 bp GCACGAGCAACAGGTTGGCTGGCAGAGCCTCGATGCTaGAGAACACCAGAGTCCTGCATTCCGGGCACCTCA +
Preference number: 6 (lower is better)
Translates to: ARATGWLAEPRC*RTPESCIPGTS
Trigger: TGAGGTGCCCGGAATGCAGGACTCTGGTGTTCTGCAGCATCGAGGCTCTGCCAGCCAACCTGTTGCTCGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp TCCTGGACCCTGGGCTCTTTCGGAGCGAGGATGTGTTaGTCGCTTTGCCTCTGGATGGGGAGGACATCAGGG +
Preference number: 6 (lower is better)
Translates to: SWTLGSFGARMC*SLCLWMGRTSG
Trigger: CCCTGATGTCCTCCCCATCCAGAGGCAAAGCGACCAACACATCCTCGCTCCGAAAGAGCCCAGGGTCCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp GAGGATGGAGGGTGGCGCAGATGCAGGCGGCTTGGGTaGCGGTTCACTCTTGATGGGCGTTTCTTTGCCTTC +
Preference number: 6 (lower is better)
Translates to: EDGGWRRCRRLG*RFTLDGRFFAF
Trigger: GAAGGCAAAGAAACGCCCATCAAGAGTGAACCGCCACCCAAGCCGCCTGCATCTGCGCCACCCTCCATCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp CCGAGGAGACTGCTTCATGCTGGGACCCCTTCAAGGTaGCTGGATGGTCGTGCTTTCCAGAGGTGGGACTGG +
Preference number: 6 (lower is better)
Translates to: PRRLLHAGTPSR*LDGRAFQRWDW
Trigger: CCAGTCCCACCTCTGGAAAGCACGACCATCCAGCCACCTTGAAGGGGTCCCAGCATGAAGCAGTCTCCTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp GGCACCAGCCGGAAAGGGCTAGCCTGTAGACTTCTGGGGCTGCTCTaGGCTTTCCTGTTGTCCTGCAAGGTCAGTATCCGAGGCCTTCGG +
Preference number: 6 (lower is better)
Translates to: GTSRKGLACRLLGLL*AFLLSCKVSIRGLR
Trigger: CCGAAGGCCTCGGATACTGACCTTGCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAAGTCTACAGGCTAGCCCTTTCCGGCTGGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp CTCCTGGACCCTGGGCTCTTTCGGAGCGAGGATGTGTTGGTCGCTTaGCCTCTGGATGGGGAGGACATCAGGGACAGGTGTCTTGTGCGT +
Preference number: 6 (lower is better)
Translates to: LLDPGLFRSEDVLVA*PLDGEDIRDRCLVR
Trigger: ACGCACAAGACACCTGTCCCTGATGTCCTCCCCATCCAGAGGCAAAGCGACCAACACATCCTCGCTCCGAAAGAGCCCAGGGTCCAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp GATCCCTTCCTCCTGGACCCTGGGCTCTTTCGGAGCGAGGATGTGTaGGTCGCTTTGCCTCTGGATGGGGAGGACATCAGGGACAGGTGT +
Preference number: 6 (lower is better)
Translates to: DPFLLDPGLFRSEDV*VALPLDGEDIRDRC
Trigger: ACACCTGTCCCTGATGTCCTCCCCATCCAGAGGCAAAGCGACCAACACATCCTCGCTCCGAAAGAGCCCAGGGTCCAGGAGGAAGGGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp CCTGGGAGGACACAGAGGAGGTGGATAACGCCCATGTaGTGCAGACAGTGGGGCTCCGGGAATCAGGAAAAC +
Preference number: 6 (lower is better)
Translates to: PGRTQRRWITPM*CRQWGSGNQEN
Trigger: GTTTTCCTGATTCCCGGAGCCCCACTGTCTGCACCACATGGGCGTTATCCACCTCCTCTGTGTCCTCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp ACTGCTTCATGCTGGGACCCCTTCAAGGTGGCTGGATaGTCGTGCTTTCCAGAGGTGGGACTGGAGGCAGAG +
Preference number: 6 (lower is better)
Translates to: TASCWDPFKVAG*SCFPEVGLEAE
Trigger: CTCTGCCTCCAGTCCCACCTCTGGAAAGCACGACCATCCAGCCACCTTGAAGGGGTCCCAGCATGAAGCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 72 bp CCTGGGCTCTTTCGGAGCGAGGATGTGTTGGTCGCTTaGCCTCTGGATGGGGAGGACATCAGGGACAGGTGT +
Preference number: 6 (lower is better)
Translates to: PGLFRSEDVLVA*PLDGEDIRDRC
Trigger: ACACCTGTCCCTGATGTCCTCCCCATCCAGAGGCAAAGCGACCAACACATCCTCGCTCCGAAAGAGCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 72 bp TTCACGAGGATGGAGGGTGGCGCAGATGCAGGCGGCTaGGGTGGCGGTTCACTCTTGATGGGCGTTTCTTTG +
Preference number: 6 (lower is better)
Translates to: FTRMEGGADAGG*GGGSLLMGVSL
Trigger: CAAAGAAACGCCCATCAAGAGTGAACCGCCACCCAAGCCGCCTGCATCTGCGCCACCCTCCATCCTCGTGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 72 bp ATTTTCTGGTTTCACGAGGATGGAGGGTGGCGCAGATaGAGGCGGCTTGGGTGGCGGTTCACTCTTGATGGG +
Preference number: 6 (lower is better)
Translates to: IFWFHEDGGWRR*RRLGWRFTLDG
Trigger: CCCATCAAGAGTGAACCGCCACCCAAGCCGCCTGCATCTGCGCCACCCTCCATCCTCGTGAAACCAGAAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 72 bp TCATGCTGGGACCCCTTCAAGGTGGCTGGATGGTCGTaGTTTCCAGAGGTGGGACTGGAGGCAGAGTGTTTG +
Preference number: 6 (lower is better)
Translates to: SCWDPFKVAGWS*FPEVGLEAECL
Trigger: CAAACACTCTGCCTCCAGTCCCACCTCTGGAAAGCACGACCATCCAGCCACCTTGAAGGGGTCCCAGCATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 72 bp AGAATGGTCATCTCTCCTCCCGAGGAGACTGCTTCATaGTGGGACCCCTTCAAGGTGGCTGGATGGTCGTGC +
Preference number: 6 (lower is better)
Translates to: RMVISPPEETAS*WDPFKVAGWSC
Trigger: GCACGACCATCCAGCCACCTTGAAGGGGTCCCAGCATGAAGCAGTCTCCTCGGGAGGAGAGATGACCATTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp CCGCACTTTCCTAAGAGACCCTTGTCCAGAAGACCCTaGGCCAGGTGTGCTCCTCGAAGGGTTAACTACGGC +
Preference number: 6 (lower is better)
Translates to: PHFPKRPLSRRP*ARCAPRRVNYG
Trigger: GCCGTAGTTAACCCTTCGAGGAGCACACCTGGCCCAGGGTCTTCTGGACAAGGGTCTCTTAGGAAAGTGCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp GCCCGGAGTGGCAGCCACTTCGGTGGGCAAATAGAATaGTCATCTCTCCTCCCGAGGAGACTGCTTCATGCT +
Preference number: 6 (lower is better)
Translates to: ARSGSHFGGQIE*SSLLPRRLLHA
Trigger: AGCATGAAGCAGTCTCCTCGGGAGGAGAGATGACCATTCTATTTGCCCACCGAAGTGGCTGCCACTCCGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp AAAGGGCTAGCCTGTAGACTTCTGGGGCTGCTCTTGGCTTTCCTGTaGTCCTGCAAGGTCAGTATCCGAGGCCTTCGGAAGGAGCCTCCT +
Preference number: 6 (lower is better)
Translates to: KGLACRLLGLLLAFL*SCKVSIRGLRKEPP
Trigger: AGGAGGCTCCTTCCGAAGGCCTCGGATACTGACCTTGCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAAGTCTACAGGCTAGCCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp TTTTCTGGTTTCACGAGGATGGAGGGTGGCGCAGATGCAGGCGGCTaGGGTGGCGGTTCACTCTTGATGGGCGTTTCTTTGCCTTCCATG +
Preference number: 6 (lower is better)
Translates to: FSGFTRMEGGADAGG*GGGSLLMGVSLPSM
Trigger: CATGGAAGGCAAAGAAACGCCCATCAAGAGTGAACCGCCACCCAAGCCGCCTGCATCTGCGCCACCCTCCATCCTCGTGAAACCAGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 72 bp AGACTTCTGGGGCTGCTCTTGGCTTTCCTGTTGTCCTaGAAGGTCAGTATCCGAGGCCTTCGGAAGGAGCCT +
Preference number: 6 (lower is better)
Translates to: RLLGLLLAFLLS*KVSIRGLRKEP
Trigger: AGGCTCCTTCCGAAGGCCTCGGATACTGACCTTGCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAAGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp GTAGAGCTGGTAGGGAAGTCTGCCTTGTCCCCATGTTaGGTGAGCACAGAGGGGCTGTTAGAGCTGATGAGC +
Preference number: 6 (lower is better)
Translates to: VELVGKSALSPC*VSTEGLLELMS
Trigger: GCTCATCAGCTCTAACAGCCCCTCTGTGCTCACCCAACATGGGGACAAGGCAGACTTCCCTACCAGCTCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp ATGGTCATCTCTCCTCCCGAGGAGACTGCTTCATGCTaGGACCCCTTCAAGGTGGCTGGATGGTCGTGCTTT +
Preference number: 6 (lower is better)
Translates to: MVISPPEETASC*DPFKVAGWSCF
Trigger: AAAGCACGACCATCCAGCCACCTTGAAGGGGTCCCAGCATGAAGCAGTCTCCTCGGGAGGAGAGATGACCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp AGGTCTGTTTGTTGCCCGGAGTGGCAGCCACTTCGGTaGGCAAATAGAATGGTCATCTCTCCTCCCGAGGAG +
Preference number: 6 (lower is better)
Translates to: RSVCCPEWQPLR*ANRMVISPPEE
Trigger: CTCCTCGGGAGGAGAGATGACCATTCTATTTGCCCACCGAAGTGGCTGCCACTCCGGGCAACAAACAGACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 72 bp GCCTGTAGACTTCTGGGGCTGCTCTTGGCTTTCCTGTaGTCCTGCAAGGTCAGTATCCGAGGCCTTCGGAAG +
Preference number: 6 (lower is better)
Translates to: ACRLLGLLLAFL*SCKVSIRGLRK
Trigger: CTTCCGAAGGCCTCGGATACTGACCTTGCAGGACAACAGGAAAGCCAAGAGCAGCCCCAGAAGTCTACAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 72 bp CTGACCTGTCCTGTAGAGCTGGTAGGGAAGTCTGCCTaGTCCCCATGTTGGGTGAGCACAGAGGGGCTGTTA +
Preference number: 6 (lower is better)
Translates to: LTCPVELVGKSA*SPCWVSTEGLL
Trigger: TAACAGCCCCTCTGTGCTCACCCAACATGGGGACAAGGCAGACTTCCCTACCAGCTCTACAGGACAGGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp GATGCAGGCGGCTTGGGTGGCGGTTCACTCTTGATGGGCGTTTCTTaGCCTTCCATGATGATGGAATTGCCTGCTGAGTGGATCCTGGTC +
Preference number: 6 (lower is better)
Translates to: DAGGLGGGSLLMGVS*PSMMMELPAEWILV
Trigger: GACCAGGATCCACTCAGCAGGCAATTCCATCATCATGGAAGGCAAAGAAACGCCCATCAAGAGTGAACCGCCACCCAAGCCGCCTGCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 72 bp GCAGTGGGCACAAAGACAGATTTGAAGGGTCCACTTTaGCGGGGATCACCTTCTGCAAAGCTACCCTGGGAG +
Preference number: 6 (lower is better)
Translates to: AVGTKTDLKGPL*RGSPSAKLPWE
Trigger: CTCCCAGGGTAGCTTTGCAGAAGGTGATCCCCGGCAAAGTGGACCCTTCAAATCTGTCTTTGTGCCCACTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 72 bp GGCAGTGGGCACAAAGACAGATTTGAAGGGTCCACTTaGCCGGGGATCACCTTCTGCAAAGCTACCCTGGGA +
Preference number: 6 (lower is better)
Translates to: GSGHKDRFEGST*PGITFCKATLG
Trigger: TCCCAGGGTAGCTTTGCAGAAGGTGATCCCCGGCAAAGTGGACCCTTCAAATCTGTCTTTGTGCCCACTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp GTGCTCCTCGAAGGGTTAACTACGGCAGTGGGCACAAAGACAGATTaGAAGGGTCCACTTTGCCGGGGATCACCTTCTGCAAAGCTACCC +
Preference number: 6 (lower is better)
Translates to: VLLEGLTTAVGTKTD*KGPLCRGSPSAKLP
Trigger: GGGTAGCTTTGCAGAAGGTGATCCCCGGCAAAGTGGACCCTTCAAATCTGTCTTTGTGCCCACTGCCGTAGTTAACCCTTCGAGGAGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 72 bp TTGCCAAAGGCTGACTTTCTCCGAAGGTCTGTTTGTTaGCCGGAGTGGCAGCCACTTCGGTGGGCAAATAGA +
Preference number: 6 (lower is better)
Translates to: LPKADFLRRSVC*PEWQPLRWANR
Trigger: TCTATTTGCCCACCGAAGTGGCTGCCACTCCGGGCAACAAACAGACCTTCGGAGAAAGTCAGCCTTTGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp ACCAGAGTCCTGCATTCCGGGCACCTCAGCTCCTTGTaGGCCTTGAAAATCCTCTGTAGACATGGTTTGCAG +
Preference number: 6 (lower is better)
Translates to: TRVLHSGHLSSL*ALKILCRHGLQ
Trigger: CTGCAAACCATGTCTACAGAGGATTTTCAAGGCCCACAAGGAGCTGAGGTGCCCGGAATGCAGGACTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp CTGATGAGCATCGGGGTGCTGATTTCCACCATCTGGTaGCCTTCAGGAGAATGGACTGTACGGTTGAGTGTG +
Preference number: 6 (lower is better)
Translates to: LMSIGVLISTIW*PSGEWTVRLSV
Trigger: CACACTCAACCGTACAGTCCATTCTCCTGAAGGCCACCAGATGGTGGAAATCAGCACCCCGATGCTCATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp GAGCTGATGAGCATCGGGGTGCTGATTTCCACCATCTaGTGGCCTTCAGGAGAATGGACTGTACGGTTGAGT +
Preference number: 6 (lower is better)
Translates to: ELMSIGVLISTI*WPSGEWTVRLS
Trigger: ACTCAACCGTACAGTCCATTCTCCTGAAGGCCACCAGATGGTGGAAATCAGCACCCCGATGCTCATCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp GCTTTCCAGAGGTGGGACTGGAGGCAGAGTGTTTGGTaGGCGGAGGGCTGTAATTCTGAAATCTCACGGTTT +
Preference number: 6 (lower is better)
Translates to: AFQRWDWRQSVW*AEGCNSEISRF
Trigger: AAACCGTGAGATTTCAGAATTACAGCCCTCCGCCCACCAAACACTCTGCCTCCAGTCCCACCTCTGGAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp GCTGACTTTCTCCGAAGGTCTGTTTGTTGCCCGGAGTaGCAGCCACTTCGGTGGGCAAATAGAATGGTCATC +
Preference number: 6 (lower is better)
Translates to: ADFLRRSVCCPE*QPLRWANRMVI
Trigger: GATGACCATTCTATTTGCCCACCGAAGTGGCTGCCACTCCGGGCAACAAACAGACCTTCGGAGAAAGTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 72 bp ATGATGATGGAATTGCCTGCTGAGTGGATCCTGGTCTaGCTACCTCTGTTGATGCAGGTCAGGGCAGGCTCC +
Preference number: 6 (lower is better)
Translates to: MMMELPAEWILV*LPLLMQVRAGS
Trigger: GGAGCCTGCCCTGACCTGCATCAACAGAGGTAGCAAGACCAGGATCCACTCAGCAGGCAATTCCATCATCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 72 bp GGCTTGGGTGGCGGTTCACTCTTGATGGGCGTTTCTTaGCCTTCCATGATGATGGAATTGCCTGCTGAGTGG +
Preference number: 6 (lower is better)
Translates to: GLGGGSLLMGVS*PSMMMELPAEW
Trigger: CCACTCAGCAGGCAATTCCATCATCATGGAAGGCAAAGAAACGCCCATCAAGAGTGAACCGCCACCCAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp GTTAACTACGGCAGTGGGCACAAAGACAGATTTGAAGGGTCCACTTaGCCGGGGATCACCTTCTGCAAAGCTACCCTGGGAGGACACAGA +
Preference number: 6 (lower is better)
Translates to: VNYGSGHKDRFEGST*PGITFCKATLGGHR
Trigger: TCTGTGTCCTCCCAGGGTAGCTTTGCAGAAGGTGATCCCCGGCAAAGTGGACCCTTCAAATCTGTCTTTGTGCCCACTGCCGTAGTTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp GCCGAGACGTTTGGCTTGAGGAAGGTCAGGCAGTCCTaGTTCTCACTCTTATCCTTGTCTCGAAGGTCAAAG +
Preference number: 6 (lower is better)
Translates to: AETFGLRKVRQS*FSLLSLSRRSK
Trigger: CTTTGACCTTCGAGACAAGGATAAGAGTGAGAACCAGGACTGCCTGACCTTCCTCAAGCCAAACGTCTCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074679.4
CDS CAA 72 bp GAAGGGTTAACTACGGCAGTGGGCACAAAGACAGATTaGAAGGGTCCACTTTGCCGGGGATCACCTTCTGCA +
Preference number: 6 (lower is better)
Translates to: EGLTTAVGTKTD*KGPLCRGSPSA
Trigger: TGCAGAAGGTGATCCCCGGCAAAGTGGACCCTTCAAATCTGTCTTTGTGCCCACTGCCGTAGTTAACCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp TGGTCGCTTTGCCTCTGGATGGGGAGGACATCAGGGACAGGTGTCTaGTGCGTGATAACTGATGTCCTTTGTTCTCTAGGAGGTGTCTTG +
Preference number: 6 (lower is better)
Translates to: WSLCLWMGRTSGTGV*CVITDVLCSLGGVL
Trigger: CAAGACACCTCCTAGAGAACAAAGGACATCAGTTATCACGCACAAGACACCTGTCCCTGATGTCCTCCCCATCCAGAGGCAAAGCGACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp AACAAGGTCTGTGTGGCTGAAGCAGTGGACAATAAGGGCATGGTCTaGCCAAAGGCTGACTTTCTCCGAAGGTCTGTTTGTTGCCCGGAG +
Preference number: 6 (lower is better)
Translates to: NKVCVAEAVDNKGMV*PKADFLRRSVCCPE
Trigger: CTCCGGGCAACAAACAGACCTTCGGAGAAAGTCAGCCTTTGGCAAGACCATGCCCTTATTGTCCACTGCTTCAGCCACACAGACCTTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS GCA 72 bp CTCTGGATGGGGAGGACATCAGGGACAGGTGTCTTGTaGGTGATAACTGATGTCCTTTGTTCTCTAGGAGGT +
Preference number: 6 (lower is better)
Translates to: LWMGRTSGTGVL*VITDVLCSLGG
Trigger: ACCTCCTAGAGAACAAAGGACATCAGTTATCACGCACAAGACACCTGTCCCTGATGTCCTCCCCATCCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 72 bp TGCCTCTGGATGGGGAGGACATCAGGGACAGGTGTCTaGTGCGTGATAACTGATGTCCTTTGTTCTCTAGGA +
Preference number: 6 (lower is better)
Translates to: CLWMGRTSGTGV*CVITDVLCSLG
Trigger: TCCTAGAGAACAAAGGACATCAGTTATCACGCACAAGACACCTGTCCCTGATGTCCTCCCCATCCAGAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp GGTTCACTCTTGATGGGCGTTTCTTTGCCTTCCATGATGATGGAATaGCCTGCTGAGTGGATCCTGGTCTTGCTACCTCTGTTGATGCAG +
Preference number: 6 (lower is better)
Translates to: GSLLMGVSLPSMMME*PAEWILVLLPLLMQ
Trigger: CTGCATCAACAGAGGTAGCAAGACCAGGATCCACTCAGCAGGCAATTCCATCATCATGGAAGGCAAAGAAACGCCCATCAAGAGTGAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp GTGCTGATTTCCACCATCTGGTGGCCTTCAGGAGAATaGACTGTACGGTTGAGTGTGTTCAAAGCTGTAGTC +
Preference number: 6 (lower is better)
Translates to: VLISTIWWPSGE*TVRLSVFKAVV
Trigger: GACTACAGCTTTGAACACACTCAACCGTACAGTCCATTCTCCTGAAGGCCACCAGATGGTGGAAATCAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 72 bp ACCATCTGGTGGCCTTCAGGAGAATGGACTGTACGGTaGAGTGTGTTCAAAGCTGTAGTCATGGAGAACTGC +
Preference number: 6 (lower is better)
Translates to: TIWWPSGEWTVR*SVFKAVVMENC
Trigger: GCAGTTCTCCATGACTACAGCTTTGAACACACTCAACCGTACAGTCCATTCTCCTGAAGGCCACCAGATGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 72 bp TGTGTGGCTGAAGCAGTGGACAATAAGGGCATGGTCTaGCCAAAGGCTGACTTTCTCCGAAGGTCTGTTTGT +
Preference number: 6 (lower is better)
Translates to: CVAEAVDNKGMV*PKADFLRRSVC
Trigger: ACAAACAGACCTTCGGAGAAAGTCAGCCTTTGGCAAGACCATGCCCTTATTGTCCACTGCTTCAGCCACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CAA 90 bp GTCTTGTGCGTGATAACTGATGTCCTTTGTTCTCTAGGAGGTGTCTaGCCGAGACGTTTGGCTCTACAAACAAGATGGGGAAGATGCCCA +
Preference number: 6 (lower is better)
Translates to: VLCVITDVLCSLGGV*PRRLALQTRWGRCP
Trigger: TGGGCATCTTCCCCATCTTGTTTGTAGAGCCAAACGTCTCGGCAAGACACCTCCTAGAGAACAAAGGACATCAGTTATCACGCACAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS TCA 72 bp CGTTTCTTTGCCTTCCATGATGATGGAATTGCCTGCTaGGTGGATCCTGGTCTTGCTACCTCTGTTGATGCA +
Preference number: 6 (lower is better)
Translates to: RFFAFHDDGIAC*VDPGLATSVDA
Trigger: TGCATCAACAGAGGTAGCAAGACCAGGATCCACTCAGCAGGCAATTCCATCATCATGGAAGGCAAAGAAACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4
CDS CCA 72 bp GTGATGACATCATCCTTGAGGAAGGTCAGGCAGTCCTaGTTCTCACTCTTATCCTTGTCTCGAAGGTCAAAG +
Preference number: 6 (lower is better)
Translates to: VMTSSLRKVRQS*FSLLSLSRRSK
Trigger: CTTTGACCTTCGAGACAAGGATAAGAGTGAGAACCAGGACTGCCTGACCTTCCTCAAGGATGATGTCATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072008.11
CDS CCA 72 bp TGTAGGGCTACAAACATGTTATTTGAAAGGTGTTGCTaGGAGCTGGGCACACTGACCATGGCTGTGGAATGT +
Preference number: 6 (lower is better)
Translates to: CRATNMLFERCC*ELGTLTMAVEC
Trigger: ACATTCCACAGCCATGGTCAGTGTGCCCAGCTCCCAGCAACACCTTTCAAATAACATGTTTGTAGCCCTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072008.11
ENSMUST00000074679.4