RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SH3RF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031642

Ensembl transcript IDs: ENSMUST00000034060.7, ENSMUST00000209611.2

Found 323 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACAGCCACTCCCAGCAAGCCTTGCCGAACAGTCCCAGGAGCGAGTaGTCTCCCAGAGCTCGCCCTTCACATCCGTCCGCTGGGAGGACA +
Preference number: 1 (lower is better)
Translates to: HSHSQQALPNSPRSE*SPRARPSHPSAGRT
Trigger: TGTCCTCCCAGCGGACGGATGTGAAGGGCGAGCTCTGGGAGACCACTCGCTCCTGGGACTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 90 bp AGAGAGACGGAACCCACACAGGTGTGTCCTCCTTCCCTCTGCCCCTaGGGTAACCAGGCCGGGGCTCTGGAGTCAGGTGCCCATCTTCTG +
Preference number: 1 (lower is better)
Translates to: RETEPTQVCPPSLCP*GNQAGALESGAHLL
Trigger: CAGAAGATGGGCACCTGACTCCAGAGCCCCGGCCTGGTTACCCCAGGGGCAGAGGGAAGGAGGACACACCTGTGTGGGTTCCGTCTCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR TCA 90 bp ACAGCAAGAGCGCCAGACACTAGGCTGGCTGAGGTGGACGCTGCCTaGATTCAGGAGTTTGAGTCTAGCCAGGGCAGCATGAGGACACCG +
Preference number: 1 (lower is better)
Translates to: TARAPDTRLAEVDAA*IQEFESSQGSMRTP
Trigger: CGGTGTCCTCATGCTGCCCTGGCTAGACTCAAACTCCTGAATTCAGGCAGCGTCCACCTCAGCCAGCCTAGTGTCTGGCGCTCTTGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR CCA 90 bp TATAAAAAGATGGGCTCAGCCAGACCCTACCACAATTGTAAGGTGTaGGCACAGCCACTCCCAGCAAGCCTTGCCGAACAGTCCCAGGAG +
Preference number: 1 (lower is better)
Translates to: YKKMGSARPYHNCKV*AQPLPASLAEQSQE
Trigger: CTCCTGGGACTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTGCCCACACCTTACAATTGTGGTAGGGTCTGGCTGAGCCCATCTTTTTATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR TCA 90 bp CAGGCCGGGGCTCTGGAGTCAGGTGCCCATCTTCTGCTCGGTTCTTaGAGATCTGGAAGTCCACAGATGTGCTCTTTCTATGAAACTGCT +
Preference number: 1 (lower is better)
Translates to: QAGALESGAHLLLGS*RSGSPQMCSFYETA
Trigger: AGCAGTTTCATAGAAAGAGCACATCTGTGGACTTCCAGATCTTCAAGAACCGAGCAGAAGATGGGCACCTGACTCCAGAGCCCCGGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR GCA 90 bp ACACACCATGCACAGTCCACACCACTGTGGGAATCCGGTATCACATaGAAGATGGCGGAGAAATCACGATGGATGAGTGGAAACGTTCAC +
Preference number: 1 (lower is better)
Translates to: THHAQSTPLWESGIT*KMAEKSRWMSGNVH
Trigger: GTGAACGTTTCCACTCATCCATCGTGATTTCTCCGCCATCTTGCATGTGATACCGGATTCCCACAGTGGTGTGGACTGTGCATGGTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR GCA 90 bp CAGGGCAGCATGAGGACACCGTCACCAGCTCAGCAACAGAGAGAATaGCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTTGTTTATC +
Preference number: 1 (lower is better)
Translates to: QGSMRTPSPAQQQRE*QLKGTSLQTGSLFI
Trigger: GATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTGTCCTCATGCTGCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR CCA 90 bp TGGGGTGGAATTGGAAGAGAGCATCAAAGGATGGATATAAAAAGATaGGCTCAGCCAGACCCTACCACAATTGTAAGGTGTGGGCACAGC +
Preference number: 1 (lower is better)
Translates to: WGGIGREHQRMDIKR*AQPDPTTIVRCGHS
Trigger: GCTGTGCCCACACCTTACAATTGTGGTAGGGTCTGGCTGAGCCCATCTTTTTATATCCATCCTTTGATGCTCTCTTCCAATTCCACCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 90 bp GCTGTCTTCCCTCTATCTGCTCTCAGGACTAGCCAGACCCACAGCTaGGGTGGAATTGGAAGAGAGCATCAAAGGATGGATATAAAAAGA +
Preference number: 1 (lower is better)
Translates to: AVFPLSALRTSQTHS*GGIGREHQRMDIKR
Trigger: TCTTTTTATATCCATCCTTTGATGCTCTCTTCCAATTCCACCCCAGCTGTGGGTCTGGCTAGTCCTGAGAGCAGATAGAGGGAAGACAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 90 bp GGCGCTGCTGCTTGTGCTAGCAGACAAACGCGTATTTCCAGTCAATaGTTGTGCTTTAGTTTGCGTCTTTCTTTACCCACTTCGTTTCAG +
Preference number: 1 (lower is better)
Translates to: GAAACASRQTRISSQ*LCFSLRLSLPTSFQ
Trigger: CTGAAACGAAGTGGGTAAAGAAAGACGCAAACTAAAGCACAACCATTGACTGGAAATACGCGTTTGTCTGCTAGCACAAGCAGCAGCGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 90 bp AAAATTGCTATGAAATACACACACCATGCACAGTCCACACCACTGTaGGAATCCGGTATCACATGCAAGATGGCGGAGAAATCACGATGG +
Preference number: 1 (lower is better)
Translates to: KIAMKYTHHAQSTPL*ESGITCKMAEKSRW
Trigger: CCATCGTGATTTCTCCGCCATCTTGCATGTGATACCGGATTCCCACAGTGGTGTGGACTGTGCATGGTGTGTGTATTTCATAGCAATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR TCA 90 bp GCTCGGTTCTTGAAGATCTGGAAGTCCACAGATGTGCTCTTTCTATaGAACTGCTTTGTGCTCTTTAGTCACACGTGGTGTGATGATAAG +
Preference number: 1 (lower is better)
Translates to: ARFLKIWKSTDVLFL*NCFVLFSHTWCDDK
Trigger: CTTATCATCACACCACGTGTGACTAAAGAGCACAAAGCAGTTTCATAGAAAGAGCACATCTGTGGACTTCCAGATCTTCAAGAACCGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR TCA 90 bp TTCAAAGCCAAAATCGCTCTAAGAATGCTGATCATTCTGAGTCTATaGACCAAGAAAGCCATGGGAACCTACGCTGTGTTCTGTCTCAGG +
Preference number: 1 (lower is better)
Translates to: FKAKIALRMLIILSL*TKKAMGTYAVFCLR
Trigger: CCTGAGACAGAACACAGCGTAGGTTCCCATGGCTTTCTTGGTTCATAGACTCAGAATGATCAGCATTCTTAGAGCGATTTTGGCTTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR GCA 90 bp AGATCTGGAAGTCCACAGATGTGCTCTTTCTATGAAACTGCTTTGTaGTCTTTAGTCACACGTGGTGTGATGATAAGCTTTCTCCGTGTC +
Preference number: 1 (lower is better)
Translates to: RSGSPQMCSFYETAL*SLVTRGVMISFLRV
Trigger: GACACGGAGAAAGCTTATCATCACACCACGTGTGACTAAAGAGCACAAAGCAGTTTCATAGAAAGAGCACATCTGTGGACTTCCAGATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR GCA 90 bp GCTGCTTGTGCTAGCAGACAAACGCGTATTTCCAGTCAATGGTTGTaGTTTAGTTTGCGTCTTTCTTTACCCACTTCGTTTCAGGAAAAT +
Preference number: 1 (lower is better)
Translates to: AACASRQTRISSQWL*FSLRLSLPTSFQEN
Trigger: ATTTTCCTGAAACGAAGTGGGTAAAGAAAGACGCAAACTAAAGCACAACCATTGACTGGAAATACGCGTTTGTCTGCTAGCACAAGCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 90 bp TCAGCAACAGAGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTaGAAGTTTGTTTATCTTCTACAATTCAAGTCTAGAGGGAACAGC +
Preference number: 1 (lower is better)
Translates to: SATERMPTEGNISPN*KFVYLLQFKSRGNS
Trigger: GCTGTTCCCTCTAGACTTGAATTGTAGAAGATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR GCA 90 bp CTAGCAGACAAACGCGTATTTCCAGTCAATGGTTGTGCTTTAGTTTaGGTCTTTCTTTACCCACTTCGTTTCAGGAAAATGAAAAACCCA +
Preference number: 1 (lower is better)
Translates to: LADKRVFPVNGCALV*VFLYPLRFRKMKNP
Trigger: TGGGTTTTTCATTTTCCTGAAACGAAGTGGGTAAAGAAAGACGCAAACTAAAGCACAACCATTGACTGGAAATACGCGTTTGTCTGCTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 90 bp GGAATGATTCCACTTCTAGCCACATTACGTATCTCTTTAAGACAATaGGATCTCTTGCCATTCTGTGACTCTTCAGTTCATGTCAATATT +
Preference number: 1 (lower is better)
Translates to: GMIPLLATLRISLRQ*DLLPFCDSSVHVNI
Trigger: AATATTGACATGAACTGAAGAGTCACAGAATGGCAAGAGATCCCATTGTCTTAAAGAGATACGTAATGTGGCTAGAAGTGGAATCATTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CAA 90 bp CCTACCACAATTGTAAGGTGTGGGCACAGCCACTCCCAGCAAGCCTaGCCGAACAGTCCCAGGAGCGAGTGGTCTCCCAGAGCTCGCCCT +
Preference number: 2 (lower is better)
Translates to: PTTIVRCGHSHSQQA*PNSPRSEWSPRARP
Trigger: AGGGCGAGCTCTGGGAGACCACTCGCTCCTGGGACTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTGCCCACACCTTACAATTGTGGTAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR GCA 90 bp CACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGCTTGCCTCTACCTGGAGTCTaGCGGCTCCCCTCCCCAGGT +
Preference number: 2 (lower is better)
Translates to: HSHTETTTFSHFPRRCCLPLPGV*RLPSPG
Trigger: ACCTGGGGAGGGGAGCCGGCAGACTCCAGGTAGAGG...CAAGCAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR GCA 90 bp TACACACACCATGCACAGTCCACACCACTGTGGGAATCCGGTATCACATGCAAGTGTCCTCCTTCCCTCTaGCCCTGGGGTAACCAGGCC +
Preference number: 2 (lower is better)
Translates to: YTHHAQSTPLWESGITCKCPPSL*PWGNQA
Trigger: GGCCTGGTTACCCCAGGGGCAGAGGGAAGGAGGACA...CTTGCATGTGATACCGGATTCCCACAGTGGTGTGGACTGTGCATGGTGTGTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR CCA 90 bp TTAACCAGCGTTATACCAGGAAGCTATTACCACGGATACTTCAATCACATAGCTCCTTCCCTCTGCCCCTaGGGTAACCAGGCCGGGGCT +
Preference number: 2 (lower is better)
Translates to: LTSVIPGSYYHGYFNHIAPSLCP*GNQAGA
Trigger: AGCCCCGGCCTGGTTACCCCAGGGGCAGAGGGAAGG...AGCTATGTGATTGAAGTATCCGTGGTAATAGCTTCCTGGTATAACGCTGGTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR TCA 90 bp AAGCCACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGCTTCAGGTTGATTTCTaGTCAAAGCAGACAGATGGG +
Preference number: 2 (lower is better)
Translates to: KPLTHRDYHFLSLPTALLLQVDF*SKQTDG
Trigger: CCCATCTGTCTGCTTTGATCAGAAATCAACCTGAAG...CAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR GCA 90 bp CACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGCTTGTATGAAACTGCTTTGTaGTCTTTAGTCACACGTGGT +
Preference number: 2 (lower is better)
Translates to: HSHTETTTFSHFPRRCCLYETAL*SLVTRG
Trigger: ACCACGTGTGACTAAAGAGCACAAAGCAGTTTCATA...CAAGCAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR TCA 90 bp GGAGCAAACATACTTAAGACATCTCGGTCAGTAGTGGTGGTGGTGGTGGGGGCAGATGTGCTCTTTCTATaGAACTGCTTTGTGCTCTTT +
Preference number: 2 (lower is better)
Translates to: GANILKTSRSVVVVVVGADVLFL*NCFVLF
Trigger: AAAGAGCACAAAGCAGTTTCATAGAAAGAGCACATC...TGCCCCCACCACCACCACCACTACTGACCGAGATGTCTTAAGTATGTTTGCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR GCA 90 bp CTGAGAACACAATGGACACGGAGGAACAGAAGGATCTCTGTGTTGGGAGGGAACCCTCTGCAAAAACAGTaGATGCTTTTAACTGCTGAG +
Preference number: 2 (lower is better)
Translates to: LRTQWTRRNRRISVLGGNPLQKQ*MLLTAE
Trigger: CTCAGCAGTTAAAAGCATGCACTGTTTTTGCAGAGG...GTTCCCTCCCAACACAGAGATCCTTCTGTTCCTCCGTGTCCATTGTGTTCTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR-3UTR GCA 90 bp AAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAACAGATGGCTCTGGAGTCAGGTaGCCATCTTCTGCTCGGTTC +
Preference number: 2 (lower is better)
Translates to: KSPIQNPHIISPSDLPTDGSGVR*PSSARF
Trigger: GAACCGAGCAGAAGATGGGCACCTGACTCCAGAGCC...ATCTGTTGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CAA 90 bp TTACTGAGAACACAATGGACACGGAGGAACAGAAGGATCTCTGTGTaGGGAGGGAACATTTTTAGGGTAACATGTCATTTCAAAGCTGGC +
Preference number: 2 (lower is better)
Translates to: LLRTQWTRRNRRISV*GGNIFRVTCHFKAG
Trigger: GCCAGCTTTGAAATGACATGTTACCCTAAAAATGTTCCCTCCCAACACAGAGATCCTTCTGTTCCTCCGTGTCCATTGTGTTCTCAGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR-3UTR CCA 90 bp ACAGAACAGAGATTTCAATGCGCTCACTGCATGCTGCTTCCTCGGGTAATGAGTTTCCAGTTTTCCTCCTaGCAGATACTTGTCTTAGTA +
Preference number: 2 (lower is better)
Translates to: TEQRFQCAHCMLLPRVMSFQFSS*QILVLV
Trigger: TACTAAGACAAGTATCTGCCAGGAGGAAAACTGGAA...ACTCATTACCCGAGGAAGCAGCATGCAGTGAGCGCATTGAAATCTCTGTTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR-3UTR GCA 90 bp GAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTTGGGGCATTCAAAAAGAATCTCTTaGTCTCAACAGACAGGAGAG +
Preference number: 2 (lower is better)
Translates to: ECISYHHCLTNFYCVLGHSKRIS*SQQTGE
Trigger: CTCTCCTGTCTGTTGAGAGCAAGAGATTCTTTTTGA...ATGCCCCAAGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CAA 90 bp CAGAGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTaGTTTATCTTCTACAATTCAAGTCTAGAGGGAACAGCGTGTACA +
Preference number: 2 (lower is better)
Translates to: QRECQLKGTSLQTGS*FIFYNSSLEGTACT
Trigger: TGTACACGCTGTTCCCTCTAGACTTGAATTGTAGAAGATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR-3UTR CCA 90 bp GAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTTGGGGCATATTCAGCTGTCTGTTTaGAAAACTGGCATTTTTGTC +
Preference number: 2 (lower is better)
Translates to: ECISYHHCLTNFYCVLGHIQLSV*KTGIFV
Trigger: GACAAAAATGCCAGTTTTCCAAACAGACAGCTGAAT...ATGCCCCAAGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CAA 90 bp CCACTTCTAGCCACATTACGTATCTCTTTAAGACAATGGGATCTCTaGCCATTCTGTGACTCTTCAGTTCATGTCAATATTTCCCAGCTA +
Preference number: 2 (lower is better)
Translates to: PLLATLRISLRQWDL*PFCDSSVHVNISQL
Trigger: TAGCTGGGAAATATTGACATGAACTGAAGAGTCACAGAATGGCAAGAGATCCCATTGTCTTAAAGAGATACGTAATGTGGCTAGAAGTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR TCA 90 bp GGGAACATTTTTAGGGTAACATGTCATTTCAAAGCTGGCTTAATATCAGTCAGAATGGATGTGTGCACATaGACGCAGGTAACCAAAGAG +
Preference number: 2 (lower is better)
Translates to: GNIFRVTCHFKAGLISVRMDVCT*TQVTKE
Trigger: CTCTTTGGTTACCTGCGTTCATGTGCACACATCCAT...TCTGACTGATATTAAGCCAGCTTTGAAATGACATGTTACCCTAAAAATGTTCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR-3UTR CCA 90 bp AAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAACAGATGCGGAGAAATCACGATaGATGAGTGGAAACGTTCAC +
Preference number: 2 (lower is better)
Translates to: KSPIQNPHIISPSDLPTDAEKSR*MSGNVH
Trigger: GTGAACGTTTCCACTCATCCATCGTGATTTCTCCGC...ATCTGTTGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR CCA 90 bp AAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAACAGATCAGCTGGGGTGGAATTaGAAGAGAGCATCAAAGGAT +
Preference number: 2 (lower is better)
Translates to: KSPIQNPHIISPSDLPTDQLGWN*KRASKD
Trigger: ATCCTTTGATGCTCTCTTCCAATTCCACCCCAGCTG...ATCTGTTGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR CCA 90 bp TCTCCAAAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAGTCTGTTTGGAAAACTaGCATTTTTGTCTAAACGGA +
Preference number: 2 (lower is better)
Translates to: SPKSPIQNPHIISPSDLPVCLEN*HFCLNG
Trigger: TCCGTTTAGACAAAAATGCCAGTTTTCCAAACAGAC...TGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTTTGGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR GCA 72 bp GAGACGGAACCCACACAGGTGTGTCCTCCTTCCCTCTaGCCCTGGGGTAACCAGGCCGGGGCTCTGGAGTCA +
Preference number: 3 (lower is better)
Translates to: ETEPTQVCPPSL*PWGNQAGALES
Trigger: TGACTCCAGAGCCCCGGCCTGGTTACCCCAGGGGCAGAGGGAAGGAGGACACACCTGTGTGGGTTCCGTCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 72 bp ATGGGCTCAGCCAGACCCTACCACAATTGTAAGGTGTaGGCACAGCCACTCCCAGCAAGCCTTGCCGAACAG +
Preference number: 3 (lower is better)
Translates to: MGSARPYHNCKV*AQPLPASLAEQ
Trigger: CTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTGCCCACACCTTACAATTGTGGTAGGGTCTGGCTGAGCCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR GCA 72 bp ACCAGGCCGGGGCTCTGGAGTCAGGTGCCCATCTTCTaGTCGGTTCTTGAAGATCTGGAAGTCCACAGATGT +
Preference number: 3 (lower is better)
Translates to: TRPGLWSQVPIF*SVLEDLEVHRC
Trigger: ACATCTGTGGACTTCCAGATCTTCAAGAACCGAGCAGAAGATGGGCACCTGACTCCAGAGCCCCGGCCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR TCA 72 bp CACATGAACGCAGGTAACCAAAGAGGCCACAGGCAGTaGTTGCCCTGGGACTGGAGACTGAACTTGGGTCCT +
Preference number: 3 (lower is better)
Translates to: HMNAGNQRGHRQ*LPWDWRLNLGP
Trigger: AGGACCCAAGTTCAGTCTCCAGTCCCAGGGCAATCACTGCCTGTGGCCTCTTTGGTTACCTGCGTTCATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR TCA 72 bp GAGGCCACAGGCAGTGATTGCCCTGGGACTGGAGACTaGACTTGGGTCCTCTGCAAAAACAGTGCATGCTTT +
Preference number: 3 (lower is better)
Translates to: EATGSDCPGTGD*TWVLCKNSACF
Trigger: AAAGCATGCACTGTTTTTGCAGAGGACCCAAGTTCAGTCTCCAGTCCCAGGGCAATCACTGCCTGTGGCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR TCA 72 bp CCTGAATTCAGGAGTTTGAGTCTAGCCAGGGCAGCATaGGGACACCGTCACCAGCTCAGCAACAGAGAGAAT +
Preference number: 3 (lower is better)
Translates to: PEFRSLSLARAA*GHRHQLSNREN
Trigger: ATTCTCTCTGTTGCTGAGCTGGTGACGGTGTCCTCATGCTGCCCTGGCTAGACTCAAACTCCTGAATTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR GCA 72 bp GCACAGTCCACACCACTGTGGGAATCCGGTATCACATaGAAGATGGCGGAGAAATCACGATGGATGAGTGGA +
Preference number: 3 (lower is better)
Translates to: AQSTPLWESGIT*KMAEKSRWMSG
Trigger: TCCACTCATCCATCGTGATTTCTCCGCCATCTTGCATGTGATACCGGATTCCCACAGTGGTGTGGACTGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 72 bp CCTCTATCTGCTCTCAGGACTAGCCAGACCCACAGCTaGGGTGGAATTGGAAGAGAGCATCAAAGGATGGAT +
Preference number: 3 (lower is better)
Translates to: PLSALRTSQTHS*GGIGREHQRMD
Trigger: ATCCATCCTTTGATGCTCTCTTCCAATTCCACCCCAGCTGTGGGTCTGGCTAGTCCTGAGAGCAGATAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 72 bp AAACGACCATTTCCTAGCAAGACTACAAGTCAGGCATaGTGGTGCACAGCAAGAGCGCCAGACACTAGGCTG +
Preference number: 3 (lower is better)
Translates to: KRPFPSKTTSQA*WCTARAPDTRL
Trigger: CAGCCTAGTGTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACTTGTAGTCTTGCTAGGAAATGGTCGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR TCA 72 bp TCACTGCATGCTGCTTCCTCGGGTAATGAGTCGCAGTaGACTTTCCAGTTTTCCTCCTGGCAGATACTTGTC +
Preference number: 3 (lower is better)
Translates to: SLHAASSGNESQ*TFQFSSWQILV
Trigger: GACAAGTATCTGCCAGGAGGAAAACTGGAAAGTTCACTGCGACTCATTACCCGAGGAAGCAGCATGCAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR GCA 72 bp ATGAGGACACCGTCACCAGCTCAGCAACAGAGAGAATaGCAACTGAAGGGAACATCTCTCCAAACTGGAAGT +
Preference number: 3 (lower is better)
Translates to: MRTPSPAQQQRE*QLKGTSLQTGS
Trigger: ACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTGTCCTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR GCA 72 bp GACTGGAGACTGAACTTGGGTCCTCTGCAAAAACAGTaGATGCTTTTAACTGCTGAGTCAGCTCTCCAGCCT +
Preference number: 3 (lower is better)
Translates to: DWRLNLGPLQKQ*MLLTAESALQP
Trigger: AGGCTGGAGAGCTGACTCAGCAGTTAAAAGCATGCACTGTTTTTGCAGAGGACCCAAGTTCAGTCTCCAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR GCA 72 bp GAGGGGGAGATGCAGTCTATGTCAAAAAGAATCTCTTaGTCTCAACAGACAGGAGAGAACCCAGCTTCTCCT +
Preference number: 3 (lower is better)
Translates to: EGEMQSMSKRIS*SQQTGENPASP
Trigger: AGGAGAAGCTGGGTTCTCTCCTGTCTGTTGAGAGCAAGAGATTCTTTTTGACATAGACTGCATCTCCCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 72 bp ATGAAATACACACACCATGCACAGTCCACACCACTGTaGGAATCCGGTATCACATGCAAGATGGCGGAGAAA +
Preference number: 3 (lower is better)
Translates to: MKYTHHAQSTPL*ESGITCKMAEK
Trigger: TTTCTCCGCCATCTTGCATGTGATACCGGATTCCCACAGTGGTGTGGACTGTGCATGGTGTGTGTATTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR CAA 90 bp GTGTGCTGGCTAACGTGTGCCTTCACCCGAGAGGGAGCAAACATACTTAAGACAGATTCAGCTGTCTGTTaGGAAAACTGGCATTTTTGT +
Preference number: 3 (lower is better)
Translates to: VCWLTCAFTREGANILKTDSAVC*ENWHFC
Trigger: ACAAAAATGCCAGTTTTCCAAACAGACAGCTGAATC...TGTCTTAAGTATGTTTGCTCCCTCTCGGGTGAAGGCACACGTTAGCCAGCACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR TCA 72 bp CACCGTCACCAGCTCAGCAACAGAGAGAATGCCAACTaGAGGGAACATCTCTCCAAACTGGAAGTTTGTTTA +
Preference number: 3 (lower is better)
Translates to: HRHQLSNRENAN*REHLSKLEVCL
Trigger: TAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR-3UTR CAA 90 bp CACACCACTGTGGGAATCCGGTATCACATGCAAGATGGCGGAGAAATCACGATGTTTTCTTACAGCCTTTaGACTTTAACACGAGTGCAT +
Preference number: 3 (lower is better)
Translates to: HTTVGIRYHMQDGGEITMFSYSL*TLTRVH
Trigger: ATGCACTCGTGTTAAAGTCAAAAGGCTGTAAGAAAA...CATCGTGATTTCTCCGCCATCTTGCATGTGATACCGGATTCCCACAGTGGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR GCA 72 bp TATAGGAAAACAGAACAGAGATTTCAATGCGCTCACTaGATGCTGCTTCCTCGGGTAATGAGTCGCAGTGAA +
Preference number: 3 (lower is better)
Translates to: YRKTEQRFQCAH*MLLPRVMSRSE
Trigger: TTCACTGCGACTCATTACCCGAGGAAGCAGCATGCAGTGAGCGCATTGAAATCTCTGTTCTGTTTTCCTATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR CCA 72 bp TCCGGTATCACATGCAAGATGGCGGAGAAATCACGATaGATGAGTGGAAACGTTCACAGTGTTTTCTTACAG +
Preference number: 3 (lower is better)
Translates to: SGITCKMAEKSR*MSGNVHSVFLQ
Trigger: CTGTAAGAAAACACTGTGAACGTTTCCACTCATCCATCGTGATTTCTCCGCCATCTTGCATGTGATACCGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 72 bp AGTAACAACAATGTATGGCTGCGGGTCACCATAGCATaGGGAACTGTATTAAAGGGTCTCAGCACTAAGAAG +
Preference number: 3 (lower is better)
Translates to: SNNNVWLRVTIA*GTVLKGLSTKK
Trigger: CTTCTTAGTGCTGAGACCCTTTAATACAGTTCCCCATGCTATGGTGACCCGCAGCCATACATTGTTGTTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR TCA 72 bp GTATCACATGCAAGATGGCGGAGAAATCACGATGGATaGGTGGAAACGTTCACAGTGTTTTCTTACAGCCTT +
Preference number: 3 (lower is better)
Translates to: VSHARWRRNHDG*VETFTVFSYSL
Trigger: AAGGCTGTAAGAAAACACTGTGAACGTTTCCACTCATCCATCGTGATTTCTCCGCCATCTTGCATGTGATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 72 bp CTTCCCGGTACTGATTCAGCTGTCTGTTTGGAAAACTaGCATTTTTGTCTAAACGGAGCCAAATATAACGGC +
Preference number: 3 (lower is better)
Translates to: LPGTDSAVCLEN*HFCLNGAKYNG
Trigger: GCCGTTATATTTGGCTCCGTTTAGACAAAAATGCCAGTTTTCCAAACAGACAGCTGAATCAGTACCGGGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CCA 72 bp GCTTGTGCTAGCAGACAAACGCGTATTTCCAGTCAATaGTTGTGCTTTAGTTTGCGTCTTTCTTTACCCACT +
Preference number: 3 (lower is better)
Translates to: ACASRQTRISSQ*LCFSLRLSLPT
Trigger: AGTGGGTAAAGAAAGACGCAAACTAAAGCACAACCATTGACTGGAAATACGCGTTTGTCTGCTAGCACAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR-3UTR CAA 90 bp TTAACCAGCGTTATACCAGGAAGCTATTACCACGGATACTTCAATCACATAGCTTCTTCTGCTCGGTTCTaGAAGATCTGGAAGTCCACA +
Preference number: 3 (lower is better)
Translates to: LTSVIPGSYYHGYFNHIASSARF*KIWKST
Trigger: TGTGGACTTCCAGATCTTCAAGAACCGAGCAGAAGA...AGCTATGTGATTGAAGTATCCGTGGTAATAGCTTCCTGGTATAACGCTGGTTAA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR TCA 72 bp TTGAAGATCTGGAAGTCCACAGATGTGCTCTTTCTATaGAACTGCTTTGTGCTCTTTAGTCACACGTGGTGT +
Preference number: 3 (lower is better)
Translates to: LKIWKSTDVLFL*NCFVLFSHTWC
Trigger: ACACCACGTGTGACTAAAGAGCACAAAGCAGTTTCATAGAAAGAGCACATCTGTGGACTTCCAGATCTTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR TCA 72 bp AAAATCGCTCTAAGAATGCTGATCATTCTGAGTCTATaGACCAAGAAAGCCATGGGAACCTACGCTGTGTTC +
Preference number: 3 (lower is better)
Translates to: KIALRMLIILSL*TKKAMGTYAVF
Trigger: GAACACAGCGTAGGTTCCCATGGCTTTCTTGGTTCATAGACTCAGAATGATCAGCATTCTTAGAGCGATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR GCA 72 bp GCTAGCAGACAAACGCGTATTTCCAGTCAATGGTTGTaGTTTAGTTTGCGTCTTTCTTTACCCACTTCGTTT +
Preference number: 3 (lower is better)
Translates to: ASRQTRISSQWL*FSLRLSLPTSF
Trigger: AAACGAAGTGGGTAAAGAAAGACGCAAACTAAAGCACAACCATTGACTGGAAATACGCGTTTGTCTGCTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR TCA 72 bp AAAAGAAATCCAGGATTAGGTCTTCAGGTTGATTTCTaGTCAAAGCAGACAGATGGGGACCTACTAACTCCT +
Preference number: 3 (lower is better)
Translates to: KRNPGLGLQVDF*SKQTDGDLLTP
Trigger: AGGAGTTAGTAGGTCCCCATCTGTCTGCTTTGATCAGAAATCAACCTGAAGACCTAATCCTGGATTTCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR GCA 72 bp TGTTTATGTTATAGGAAAACAGAACAGAGATTTCAATaGGCTCACTGCATGCTGCTTCCTCGGGTAATGAGT +
Preference number: 3 (lower is better)
Translates to: CLCYRKTEQRFQ*AHCMLLPRVMS
Trigger: ACTCATTACCCGAGGAAGCAGCATGCAGTGAGCGCATTGAAATCTCTGTTCTGTTTTCCTATAACATAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR-3UTR CAA 90 bp TTAACCAGCGTTATACCAGGAAGCTATTACCACGGATACTTCAATCACATAGCTGTCAAAAAGAATCTCTaGCTCTCAACAGACAGGAGA +
Preference number: 3 (lower is better)
Translates to: LTSVIPGSYYHGYFNHIAVKKNL*LSTDRR
Trigger: TCTCCTGTCTGTTGAGAGCAAGAGATTCTTTTTGAC...AGCTATGTGATTGAAGTATCCGTGGTAATAGCTTCCTGGTATAACGCTGGTTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR GCA 72 bp AAACGCGTATTTCCAGTCAATGGTTGTGCTTTAGTTTaGGTCTTTCTTTACCCACTTCGTTTCAGGAAAATG +
Preference number: 3 (lower is better)
Translates to: KRVFPVNGCALV*VFLYPLRFRKM
Trigger: CATTTTCCTGAAACGAAGTGGGTAAAGAAAGACGCAAACTAAAGCACAACCATTGACTGGAAATACGCGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp AGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACACTAGGCTGGCTGAGGTGTGGGAGGCCAGAGAATaGTGGGGCAGGCCCACGGAT +
Preference number: 4 (lower is better)
Translates to: SQAWWCTARAPDTRLAEVWEARE*WGRPTD
Trigger: ATCCGTGGGCCTGCCCCATCATTCTCTGGCCTCCCA...CACCTCAGCCAGCCTAGTGTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp AGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACACTAGGCTGGCTGAGGTGCCAGGGAGCTTGTCTTaGGGTGGAAGGCATCCTGGG +
Preference number: 4 (lower is better)
Translates to: SQAWWCTARAPDTRLAEVPGSLS*GGRHPG
Trigger: CCCAGGATGCCTTCCACCGCAAGACAAGCTCCCTGG...CACCTCAGCCAGCCTAGTGTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp CCAGGGCAGCATGAGGACACCGTCACCAGCTCAGCAACAGAGAGAATGCCAACTGCAGGCCTGGCGAGGTaGTGGAGCAATGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: PGQHEDTVTSSATERMPTAGLAR*WSNGHC
Trigger: GCAGTGCCCATTGCTCCACCACCTCGCCAGGCCTGC...AGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTGTCCTCATGCTGCCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR TCA 90 bp AGGGGCAGGGGCAGGGAAGAGATCGCTGTGTATGTTAAACCTCCTGTTATCGGTGCCGGGCCTCATTCATaGCTGGGCCCAGGGAGGAGC +
Preference number: 4 (lower is better)
Translates to: RGRGREEIAVYVKPPVIGAGPHS*LGPGRS
Trigger: GCTCCTCCCTGGGCCCAGTCATGAATGAGGCCCGGC...ACCGATAACAGGAGGTTTAACATACACAGCGATCTCTTCCCTGCCCCTGCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CAA 72 bp ATTGTAAGGTGTGGGCACAGCCACTCCCAGCAAGCCTaGCCGAACAGTCCCAGGAGCGAGTGGTCTCCCAGA +
Preference number: 4 (lower is better)
Translates to: IVRCGHSHSQQA*PNSPRSEWSPR
Trigger: TCTGGGAGACCACTCGCTCCTGGGACTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTGCCCACACCTTACAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp GGAGCAAACATACTTAAGACATCTCGGTCAGTAGTGGTGGTGGTGGTGGGGGCAAGCAGCAGTAGCGCCTaGCGGGGTGGAGGCGAGTAC +
Preference number: 4 (lower is better)
Translates to: GANILKTSRSVVVVVVGASSSSA*RGGGEY
Trigger: GTACTCGCCTCCACCCCGTCAGGCGCTACTGCTGCT...TGCCCCCACCACCACCACCACTACTGACCGAGATGTCTTAAGTATGTTTGCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp AGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACACTAGGCTGGCTGAGGTGACAGCATTGCGGGCCTaGTTGACTGTCATCTGCCCA +
Preference number: 4 (lower is better)
Translates to: SQAWWCTARAPDTRLAEVTALRA*LTVICP
Trigger: TGGGCAGATGACAGTCAATCAGGCCCGCAATGCTGT...CACCTCAGCCAGCCTAGTGTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR TCA 90 bp GACACCGTCACCAGCTCAGCAACAGAGAGAATGCCAACTGAAGGGAACATCTCTGCCGGGCCTCATTCATaGCTGGGCCCAGGGAGGAGC +
Preference number: 4 (lower is better)
Translates to: DTVTSSATERMPTEGNISAGPHS*LGPGRS
Trigger: GCTCCTCCCTGGGCCCAGTCATGAATGAGGCCCGGC...AGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp AGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACACTAGGCTGGCTGAGGTGTCTGCACGAAGTTGGTaGGGAAAAAGCCGTGGACCC +
Preference number: 4 (lower is better)
Translates to: SQAWWCTARAPDTRLAEVSARSW*GKSRGP
Trigger: GGGTCCACGGCTTTTTCCCCACCAACTTCGTGCAGA...CACCTCAGCCAGCCTAGTGTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp GTGTGCTGGCTAACGTGTGCCTTCACCCGAGAGGGAGCAAACATACTTAAGACATGGAGGCGAGTACGGTaGCCGCCAGGAGAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: VCWLTCAFTREGANILKTWRRVR*PPGEGV
Trigger: CACCCCCTCTCCTGGCGGCCACCGTACTCGCCTCCA...TGTCTTAAGTATGTTTGCTCCCTCTCGGGTGAAGGCACACGTTAGCCAGCACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp CACAATTGTAAGGTGTGGGCACAGCCACTCCCAGCAAGCCTTGCCGAACAGTCCGCCGTGGGGCGTTCCTaGCTATGTGCTGCAACTGTC +
Preference number: 4 (lower is better)
Translates to: HNCKVWAQPLPASLAEQSAVGRS*LCAATV
Trigger: GACAGTTGCAGCACATAGCCAGGAACGCCCCACGGC...GGACTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTGCCCACACCTTACAATTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp CACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGCTTGCACATCCAGGGTAGGTaGTGCTGGAGGGGAGACTCG +
Preference number: 4 (lower is better)
Translates to: HSHTETTTFSHFPRRCCLHIQGR*CWRGDS
Trigger: CGAGTCTCCCCTCCAGCATCACCTACCCTGGATGTG...CAAGCAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp CACAATTGTAAGGTGTGGGCACAGCCACTCCCAGCAAGCCTTGCCGAACAGTCCGGAGGATGGTCACTGTaGGACCACTGGGCTCTGTCT +
Preference number: 4 (lower is better)
Translates to: HNCKVWAQPLPASLAEQSGGWSL*DHWALS
Trigger: AGACAGAGCCCAGTGGTCGCACAGTGACCATCCTCC...GGACTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTGCCCACACCTTACAATTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp GGAGCAAACATACTTAAGACATCTCGGTCAGTAGTGGTGGTGGTGGTGGGGGCAGGGAGACTCGGGGCTTaGGTTTGGTGGAGGCACCAG +
Preference number: 4 (lower is better)
Translates to: GANILKTSRSVVVVVVGAGRLGA*VWWRHQ
Trigger: CTGGTGCCTCCACCAAACGCAAGCCCCGAGTCTCCC...TGCCCCCACCACCACCACCACTACTGACCGAGATGTCTTAAGTATGTTTGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp GGAGCAAACATACTTAAGACATCTCGGTCAGTAGTGGTGGTGGTGGTGGGGGCAATGTGTTTGTGCAGGTaGTCCCGCCGCCCCCACCAG +
Preference number: 4 (lower is better)
Translates to: GANILKTSRSVVVVVVGAMCLCR*SRRPHQ
Trigger: CTGGTGGGGGCGGCGGGACCACCTGCACAAACACAT...TGCCCCCACCACCACCACCACTACTGACCGAGATGTCTTAAGTATGTTTGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp GCAGTGATTGCCCTGGGACTGGAGACTGAACTTGGGTCCTCTGCAAAAACAGTGATGTGTTTGTGCAGGTaGTCCCGCCGCCCCCACCAG +
Preference number: 4 (lower is better)
Translates to: AVIALGLETELGSSAKTVMCLCR*SRRPHQ
Trigger: CTGGTGGGGGCGGCGGGACCACCTGCACAAACACAT...CACTGTTTTTGCAGAGGACCCAAGTTCAGTCTCCAGTCCCAGGGCAATCACTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp GGAGCAAACATACTTAAGACATCTCGGTCAGTAGTGGTGGTGGTGGTGGGGGCAAGCAGGACCCGCCATTaGAGGCAGAGGTTGGGAGGC +
Preference number: 4 (lower is better)
Translates to: GANILKTSRSVVVVVVGASRTRH*RQRLGG
Trigger: GCCTCCCAACCTCTGCCTCCAATGGCGGGTCCTGCT...TGCCCCCACCACCACCACCACTACTGACCGAGATGTCTTAAGTATGTTTGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp GCAGTGATTGCCCTGGGACTGGAGACTGAACTTGGGTCCTCTGCAAAAACAGTGGAGGTGGTGGAGCAATaGGCACTGCGGAGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: AVIALGLETELGSSAKTVEVVEQ*ALRSPG
Trigger: CCCTGGACTCCGCAGTGCCCATTGCTCCACCACCTC...CACTGTTTTTGCAGAGGACCCAAGTTCAGTCTCCAGTCCCAGGGCAATCACTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR TCA 90 bp CACAATTGTAAGGTGTGGGCACAGCCACTCCCAGCAAGCCTTGCCGAACAGTCCGGACTTGTCTGGATATaGGCTGCTGACACCACAGCC +
Preference number: 4 (lower is better)
Translates to: HNCKVWAQPLPASLAEQSGLVWI*AADTTA
Trigger: GGCTGTGGTGTCAGCAGCTCATATCCAGACAAGTCC...GGACTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTGCCCACACCTTACAATTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp GGAGCAAACATACTTAAGACATCTCGGTCAGTAGTGGTGGTGGTGGTGGGGGCACCCTTAATGTGTTTGTaGAGGTGGTCCCGCCGCCCC +
Preference number: 4 (lower is better)
Translates to: GANILKTSRSVVVVVVGAPLMCL*RWSRRP
Trigger: GGGGCGGCGGGACCACCTGCACAAACACATTAAGGG...TGCCCCCACCACCACCACCACTACTGACCGAGATGTCTTAAGTATGTTTGCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp TACACACACCATGCACAGTCCACACCACTGTGGGAATCCGGTATCACATGCAAGGCTTGCACCCGAGGCTaGTGTCCACACTGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: YTHHAQSTPLWESGITCKACTRG*CPHWEL
Trigger: GAGCTCCCAGTGTGGACAGCAGCCTCGGGTGCAAGC...CTTGCATGTGATACCGGATTCCCACAGTGGTGTGGACTGTGCATGGTGTGTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp GACACCGTCACCAGCTCAGCAACAGAGAGAATGCCAACTGAAGGGAACATCTCTGGACCTACTGCTCCCTaGAAGGGAGCCTCCCCAGCA +
Preference number: 4 (lower is better)
Translates to: DTVTSSATERMPTEGNISGPTAP*KGASPA
Trigger: TGCTGGGGAGGCTCCCTTGCAGGGAGCAGTAGGTCC...AGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp AGGGGCAGGGGCAGGGAAGAGATCGCTGTGTATGTTAAACCTCCTGTTATCGGTGAGTCACTGCTGCCGTaGGGCGTTCCTGGCTATGTG +
Preference number: 4 (lower is better)
Translates to: RGRGREEIAVYVKPPVIGESLLP*GVPGYV
Trigger: CACATAGCCAGGAACGCCCCACGGCAGCAGTGACTC...ACCGATAACAGGAGGTTTAACATACACAGCGATCTCTTCCCTGCCCCTGCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp CACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGCTTGGGCACTGGTCATATTTaGGGAGGCCAGAGAAGCCCC +
Preference number: 4 (lower is better)
Translates to: HSHTETTTFSHFPRRCCLGTGHI*GGQRSP
Trigger: GGGGCTTCTCTGGCCTCCCCAAATATGACCAGTGCC...CAAGCAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp GTGTGCTGGCTAACGTGTGCCTTCACCCGAGAGGGAGCAAACATACTTAAGACAGGCCTCATTCATGACTaGGCCCAGGGAGGAGCAGGC +
Preference number: 4 (lower is better)
Translates to: VCWLTCAFTREGANILKTGLIHD*AQGGAG
Trigger: GCCTGCTCCTCCCTGGGCCCAGTCATGAATGAGGCC...TGTCTTAAGTATGTTTGCTCCCTCTCGGGTGAAGGCACACGTTAGCCAGCACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp AAGCCACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGCTGTGTAGGTCCTCCTaGAGTGGAAGGGCTGACCAT +
Preference number: 4 (lower is better)
Translates to: KPLTHRDYHFLSLPTALLLCRSS*SGRADH
Trigger: ATGGTCAGCCCTTCCACTGCAGGAGGACCTACACAG...CAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp GCAGTGATTGCCCTGGGACTGGAGACTGAACTTGGGTCCTCTGCAAAAACAGTGGGAGGATGGTCACTGTaGGACCACTGGGCTCTGTCT +
Preference number: 4 (lower is better)
Translates to: AVIALGLETELGSSAKTVGGWSL*DHWALS
Trigger: AGACAGAGCCCAGTGGTCGCACAGTGACCATCCTCC...CACTGTTTTTGCAGAGGACCCAAGTTCAGTCTCCAGTCCCAGGGCAATCACTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp AAGCCACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGGGCTGCTGTCCACACTaGGAGCTCTGCAGATCTTTC +
Preference number: 4 (lower is better)
Translates to: KPLTHRDYHFLSLPTALLGCCPH*ELCRSF
Trigger: GAAAGATCTGCAGAGCTCCCAGTGTGGACAGCAGCC...CAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp CACACCACTGTGGGAATCCGGTATCACATGCAAGATGGCGGAGAAATCACGATGTGCCGTGTCCACTCCTaGCACGGGAGGCTTATCCCA +
Preference number: 4 (lower is better)
Translates to: HTTVGIRYHMQDGGEITMCRVHS*HGRLIP
Trigger: TGGGATAAGCCTCCCGTGCCAGGAGTGGACACGGCA...CATCGTGATTTCTCCGCCATCTTGCATGTGATACCGGATTCCCACAGTGGTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp CAACCTTTGGGTTGTGACCTCCGGACAACTGATTCATACAGTAGCACAATTCCATGGAGGCGAGTACGGTaGCCGCCAGGAGAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: QPLGCDLRTTDSYSSTIPWRRVR*PPGEGV
Trigger: CACCCCCTCTCCTGGCGGCCACCGTACTCGCCTCCA...TGGAATTGTGCTACTGTATGAATCAGTTGTCCGGAGGTCACAACCCAAAGGTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp CTGAGAACACAATGGACACGGAGGAACAGAAGGATCTCTGTGTTGGGAGGGAACGCCGTGGGGCGTTCCTaGCTATGTGCTGCAACTGTC +
Preference number: 4 (lower is better)
Translates to: LRTQWTRRNRRISVLGGNAVGRS*LCAATV
Trigger: GACAGTTGCAGCACATAGCCAGGAACGCCCCACGGC...GTTCCCTCCCAACACAGAGATCCTTCTGTTCCTCCGTGTCCATTGTGTTCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp GCAGTGATTGCCCTGGGACTGGAGACTGAACTTGGGTCCTCTGCAAAAACAGTGAGGCAGGCGGCATTCTaGACCTGGATGGGAGTCACT +
Preference number: 4 (lower is better)
Translates to: AVIALGLETELGSSAKTVRQAAF*TWMGVT
Trigger: AGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCT...CACTGTTTTTGCAGAGGACCCAAGTTCAGTCTCCAGTCCCAGGGCAATCACTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp CTGAGAACACAATGGACACGGAGGAACAGAAGGATCTCTGTGTTGGGAGGGAACGGAGTCCAGGGAGGATaGTCACTGTGCGACCACTGG +
Preference number: 4 (lower is better)
Translates to: LRTQWTRRNRRISVLGGNGVQGG*SLCDHW
Trigger: CCAGTGGTCGCACAGTGACCATCCTCCCTGGACTCC...GTTCCCTCCCAACACAGAGATCCTTCTGTTCCTCCGTGTCCATTGTGTTCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp GTGTGCTGGCTAACGTGTGCCTTCACCCGAGAGGGAGCAAACATACTTAAGACACGGTGGAAGGCATCCTaGGCTAGGGCTGCTGTTCCA +
Preference number: 4 (lower is better)
Translates to: VCWLTCAFTREGANILKTRWKAS*ARAAVP
Trigger: TGGAACAGCAGCCCTAGCCCAGGATGCCTTCCACCG...TGTCTTAAGTATGTTTGCTCCCTCTCGGGTGAAGGCACACGTTAGCCAGCACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp GAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTTGGGGCATGGTGTCGGGGTGCTTTaGGGCAGAGGTGCTCTGCGC +
Preference number: 4 (lower is better)
Translates to: ECISYHHCLTNFYCVLGHGVGVL*GRGALR
Trigger: GCGCAGAGCACCTCTGCCTCAAAGCACCCCGACACC...ATGCCCCAAGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp CAACCTTTGGGTTGTGACCTCCGGACAACTGATTCATACAGTAGCACAATTCCAAGCAGCAGTAGCGCCTaGCGGGGTGGAGGCGAGTAC +
Preference number: 4 (lower is better)
Translates to: QPLGCDLRTTDSYSSTIPSSSSA*RGGGEY
Trigger: GTACTCGCCTCCACCCCGTCAGGCGCTACTGCTGCT...TGGAATTGTGCTACTGTATGAATCAGTTGTCCGGAGGTCACAACCCAAAGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR TCA 90 bp GCAGTGATTGCCCTGGGACTGGAGACTGAACTTGGGTCCTCTGCAAAAACAGTGCATTGCGGGCCTGATTaGCTGTCATCTGCCCAGACA +
Preference number: 4 (lower is better)
Translates to: AVIALGLETELGSSAKTVHCGPD*LSSAQT
Trigger: TGTCTGGGCAGATGACAGTCAATCAGGCCCGCAATG...CACTGTTTTTGCAGAGGACCCAAGTTCAGTCTCCAGTCCCAGGGCAATCACTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR TCA 90 bp AGGGGCAGGGGCAGGGAAGAGATCGCTGTGTATGTTAAACCTCCTGTTATCGGTACAGCATTGCGGGCCTaGTTGACTGTCATCTGCCCA +
Preference number: 4 (lower is better)
Translates to: RGRGREEIAVYVKPPVIGTALRA*LTVICP
Trigger: TGGGCAGATGACAGTCAATCAGGCCCGCAATGCTGT...ACCGATAACAGGAGGTTTAACATACACAGCGATCTCTTCCCTGCCCCTGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp AATTGTAAGGTGTGGGCACAGCCACTCCCAGCAAGCCTTGCCGAACAGTCCCAGGGTTTCCAAGGCCTCTaGTTGATGCCATCCAGAAGT +
Preference number: 4 (lower is better)
Translates to: NCKVWAQPLPASLAEQSQGFQGL*LMPSRS
Trigger: ACTTCTGGATGGCATCAAGCAGAGGCCTTGGAAACC...CTGGGACTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTGCCCACACCTTACAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp CACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGCTTGCCACACTGGGAGCTCTaGAGATCTTTCGAGCCACAA +
Preference number: 4 (lower is better)
Translates to: HSHTETTTFSHFPRRCCLPHWEL*RSFEPQ
Trigger: TTGTGGCTCGAAAGATCTGCAGAGCTCCCAGTGTGG...CAAGCAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp AGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACACTAGGCTGGCTGAGGTGCAATTAACCCAGTGGTaGTTATATGGACCTGAGACG +
Preference number: 4 (lower is better)
Translates to: SQAWWCTARAPDTRLAEVQLTQW*LYGPET
Trigger: CGTCTCAGGTCCATATAAGCACCACTGGGTTAATTG...CACCTCAGCCAGCCTAGTGTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp TTTCCTAGCAAGACTACAAGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACCTGTGTAGGTCCTCCTaGAGTGGAAGGGCTGACCAT +
Preference number: 4 (lower is better)
Translates to: FPSKTTSQAWWCTARAPDLCRSS*SGRADH
Trigger: ATGGTCAGCCCTTCCACTGCAGGAGGACCTACACAG...GTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACTTGTAGTCTTGCTAGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp ACAGAACAGAGATTTCAATGCGCTCACTGCATGCTGCTTCCTCGGGTAATGAGTGATGGGAGTCACTGCTaGCGTGGGGCGTTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: TEQRFQCAHCMLLPRVMSDGSHC*RGAFLA
Trigger: AGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATC...ACTCATTACCCGAGGAAGCAGCATGCAGTGAGCGCATTGAAATCTCTGTTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp GCAGTGATTGCCCTGGGACTGGAGACTGAACTTGGGTCCTCTGCAAAAACAGTGCCGCTGACTTCCCCGTaGTACCAATTCTCATCCACC +
Preference number: 4 (lower is better)
Translates to: AVIALGLETELGSSAKTVPLTSP*YQFSST
Trigger: GGTGGATGAGAATTGGTACCACGGGGAAGTCAGCGG...CACTGTTTTTGCAGAGGACCCAAGTTCAGTCTCCAGTCCCAGGGCAATCACTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp AAGCCACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGTCCTGGTGTTCTTCTTaGTGTCGGGGTGCTTTGAGG +
Preference number: 4 (lower is better)
Translates to: KPLTHRDYHFLSLPTALLSWCSS*CRGALR
Trigger: CCTCAAAGCACCCCGACACCAAGAAGAACACCAGGA...CAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp CCAGGGCAGCATGAGGACACCGTCACCAGCTCAGCAACAGAGAGAATGCCAACTATAGAGACTTTAGCTTaGGAGGCATTCGTCACCGCC +
Preference number: 4 (lower is better)
Translates to: PGQHEDTVTSSATERMPTIETLA*EAFVTA
Trigger: GGCGGTGACGAATGCCTCCCAAGCTAAAGTCTCTAT...AGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTGTCCTCATGCTGCCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp CACACCACTGTGGGAATCCGGTATCACATGCAAGATGGCGGAGAAATCACGATGGAGCTTGTCTTGCGGTaGAAGGCATCCTGGGCTAGG +
Preference number: 4 (lower is better)
Translates to: HTTVGIRYHMQDGGEITMELVLR*KASWAR
Trigger: CCTAGCCCAGGATGCCTTCCACCGCAAGACAAGCTC...CATCGTGATTTCTCCGCCATCTTGCATGTGATACCGGATTCCCACAGTGGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp CACACCACTGTGGGAATCCGGTATCACATGCAAGATGGCGGAGAAATCACGATGGGCATTCGGGACATCTaGGTTCATTCCGGGAACCCA +
Preference number: 4 (lower is better)
Translates to: HTTVGIRYHMQDGGEITMGIRDI*VHSGNP
Trigger: TGGGTTCCCGGAATGAACTCAGATGTCCCGAATGCC...CATCGTGATTTCTCCGCCATCTTGCATGTGATACCGGATTCCCACAGTGGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp GACACCGTCACCAGCTCAGCAACAGAGAGAATGCCAACTGAAGGGAACATCTCTACTGTTCCCACACGCTaGTGCAGCACTCTCTGGAGA +
Preference number: 4 (lower is better)
Translates to: DTVTSSATERMPTEGNISTVPTR*CSTLWR
Trigger: TCTCCAGAGAGTGCTGCATCAGCGTGTGGGAACAGT...AGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp TTTCCTAGCAAGACTACAAGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACACCACAGTGCTGCCCTaGGCCCTTAATGTGTTTGTG +
Preference number: 4 (lower is better)
Translates to: FPSKTTSQAWWCTARAPDTTVLP*ALNVFV
Trigger: CACAAACACATTAAGGGCGCAGGGCAGCACTGTGGT...GTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACTTGTAGTCTTGCTAGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp GCAGTGATTGCCCTGGGACTGGAGACTGAACTTGGGTCCTCTGCAAAAACAGTGCCACACTGGGAGCTCTaGAGATCTTTCGAGCCACAA +
Preference number: 4 (lower is better)
Translates to: AVIALGLETELGSSAKTVPHWEL*RSFEPQ
Trigger: TTGTGGCTCGAAAGATCTGCAGAGCTCCCAGTGTGG...CACTGTTTTTGCAGAGGACCCAAGTTCAGTCTCCAGTCCCAGGGCAATCACTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp CTGAGAACACAATGGACACGGAGGAACAGAAGGATCTCTGTGTTGGGAGGGAACAGTCGTAAAGTGCTTTaGACTGAGGCGGGGGCTGAG +
Preference number: 4 (lower is better)
Translates to: LRTQWTRRNRRISVLGGNSRKVL*TEAGAE
Trigger: CTCAGCCCCCGCCTCAGTGCAAAGCACTTTACGACT...GTTCCCTCCCAACACAGAGATCCTTCTGTTCCTCCGTGTCCATTGTGTTCTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp GACACCGTCACCAGCTCAGCAACAGAGAGAATGCCAACTGAAGGGAACATCTCTTTCTTGGTGTCGGGGTaGTTTGAGGCAGAGGTGCTC +
Preference number: 4 (lower is better)
Translates to: DTVTSSATERMPTEGNISFLVSG*FEAEVL
Trigger: GAGCACCTCTGCCTCAAAGCACCCCGACACCAAGAA...AGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp AAAACAGAACAGAGATTTCAATGCGCTCACTGCATGCTGCTTCCTCGGGTAATGCTGGATGGGAGTCACTaGTGCCGTGGGGCGTTCCTG +
Preference number: 4 (lower is better)
Translates to: KTEQRFQCAHCMLLPRVMLDGSH*CRGAFL
Trigger: CAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAG...CATTACCCGAGGAAGCAGCATGCAGTGAGCGCATTGAAATCTCTGTTCTGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp CACACCACTGTGGGAATCCGGTATCACATGCAAGATGGCGGAGAAATCACGATGCCGCTGACTTCCCCGTaGTACCAATTCTCATCCACC +
Preference number: 4 (lower is better)
Translates to: HTTVGIRYHMQDGGEITMPLTSP*YQFSST
Trigger: GGTGGATGAGAATTGGTACCACGGGGAAGTCAGCGG...CATCGTGATTTCTCCGCCATCTTGCATGTGATACCGGATTCCCACAGTGGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp AAGCCACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGTTGTACCAGCCGTCCTaGCAACGCTCAAACACCAAA +
Preference number: 4 (lower is better)
Translates to: KPLTHRDYHFLSLPTALLLYQPS*QRSNTK
Trigger: TTTGGTGTTTGAGCGTTGCCAGGACGGCTGGTACAA...CAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp AACTACGGTTCAAAGCCACTCACACACAGAGACTACCACTTTCTCTCACTTCCCGCGGCATTCTGGACCTaGATGGGAGTCACTGCTGCC +
Preference number: 4 (lower is better)
Translates to: NYGSKPLTHRDYHFLSLPAAFWT*MGVTAA
Trigger: GGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGC...GGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTGGCTTTGAACCGTAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp AAAACAGAACAGAGATTTCAATGCGCTCACTGCATGCTGCTTCCTCGGGTAATGGGCCTCATTCATGACTaGGCCCAGGGAGGAGCAGGC +
Preference number: 4 (lower is better)
Translates to: KTEQRFQCAHCMLLPRVMGLIHD*AQGGAG
Trigger: GCCTGCTCCTCCCTGGGCCCAGTCATGAATGAGGCC...CATTACCCGAGGAAGCAGCATGCAGTGAGCGCATTGAAATCTCTGTTCTGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR TCA 90 bp ATGAACCAAGAAAGCCATGGGAACCTACGCTGTGTTCTGTCTCAGGAGACAGGAGGACTTGTCTGGATATaGGCTGCTGACACCACAGCC +
Preference number: 4 (lower is better)
Translates to: MNQESHGNLRCVLSQETGGLVWI*AADTTA
Trigger: GGCTGTGGTGTCAGCAGCTCATATCCAGACAAGTCC...TCCTGTCTCCTGAGACAGAACACAGCGTAGGTTCCCATGGCTTTCTTGGTTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp TTTCCTAGCAAGACTACAAGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACGGTTTCCAAGGCCTCTaGTTGATGCCATCCAGAAGT +
Preference number: 4 (lower is better)
Translates to: FPSKTTSQAWWCTARAPDGFQGL*LMPSRS
Trigger: ACTTCTGGATGGCATCAAGCAGAGGCCTTGGAAACC...GTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACTTGTAGTCTTGCTAGGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp TTTCCTAGCAAGACTACAAGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACTTCAAAGTCGTAAAGTaGTTTGCACTGAGGCGGGGG +
Preference number: 4 (lower is better)
Translates to: FPSKTTSQAWWCTARAPDFKVVK*FALRRG
Trigger: CCCCCGCCTCAGTGCAAAGCACTTTACGACTTTGAA...GTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACTTGTAGTCTTGCTAGGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp AATTGTAAGGTGTGGGCACAGCCACTCCCAGCAAGCCTTGCCGAACAGTCCCAGCCTATCTTGCTGGTATaGATCGATGTCCCTTTGTAC +
Preference number: 4 (lower is better)
Translates to: NCKVWAQPLPASLAEQSQPILLV*IDVPLY
Trigger: GTACAAAGGGACATCGATGCATACCAGCAAGATAGG...CTGGGACTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTGCCCACACCTTACAATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp CACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGCTTGTTCCTGGCTATGTGCTaGAACTGTCCTCACAGCATT +
Preference number: 4 (lower is better)
Translates to: HSHTETTTFSHFPRRCCLFLAMC*NCPHSI
Trigger: AATGCTGTGAGGACAGTTGCAGCACATAGCCAGGAA...CAAGCAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp CTTACCACCACTGTCTCACAAACTTTTACTGTGTCTTGGGGCATGCGGATCACTCGGTTCTGGGACCCCTaGGAAGACTTGTTGGCCATG +
Preference number: 4 (lower is better)
Translates to: LTTTVSQTFTVSWGMRITRFWDP*EDLLAM
Trigger: CATGGCCAACAAGTCTTCCCAGGGGTCCCAGAACCG...AGTGATCCGCATGCCCCAAGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp ACAGAACAGAGATTTCAATGCGCTCACTGCATGCTGCTTCCTCGGGTAATGAGTCATTCTGGACCTGGATaGGAGTCACTGCTGCCGTGG +
Preference number: 4 (lower is better)
Translates to: TEQRFQCAHCMLLPRVMSHSGPG*ESLLPW
Trigger: CCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATG...ACTCATTACCCGAGGAAGCAGCATGCAGTGAGCGCATTGAAATCTCTGTTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp ACAGAACAGAGATTTCAATGCGCTCACTGCATGCTGCTTCCTCGGGTAATGAGTGAGCTTGTCTTGCGGTaGAAGGCATCCTGGGCTAGG +
Preference number: 4 (lower is better)
Translates to: TEQRFQCAHCMLLPRVMSELVLR*KASWAR
Trigger: CCTAGCCCAGGATGCCTTCCACCGCAAGACAAGCTC...ACTCATTACCCGAGGAAGCAGCATGCAGTGAGCGCATTGAAATCTCTGTTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR TCA 90 bp GCTGTCTGTTTGGAAAACTGGCATTTTTGTCTAAACGGAGCCAAATATAACGGCTGGGAGGCCAGAGAATaGTGGGGCAGGCCCACGGAT +
Preference number: 4 (lower is better)
Translates to: AVCLENWHFCLNGAKYNGWEARE*WGRPTD
Trigger: ATCCGTGGGCCTGCCCCATCATTCTCTGGCCTCCCA...GCCGTTATATTTGGCTCCGTTTAGACAAAAATGCCAGTTTTCCAAACAGACAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp AGGGGCAGGGGCAGGGAAGAGATCGCTGTGTATGTTAAACCTCCTGTTATCGGTCAATATCTCCTTCCTTaGGTTCAAGTTCGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: RGRGREEIAVYVKPPVIGQYLLP*VQVRPH
Trigger: GTGAGGCCGAACTTGAACTCAAGGAAGGAGATATTG...ACCGATAACAGGAGGTTTAACATACACAGCGATCTCTTCCCTGCCCCTGCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp CACTCACACACAGAGACTACCACTTTCTCTCACTTCCCACGGCGCTGCTGCTTGCAATTAACCCAGTGGTaGTTATATGGACCTGAGACG +
Preference number: 4 (lower is better)
Translates to: HSHTETTTFSHFPRRCCLQLTQW*LYGPET
Trigger: CGTCTCAGGTCCATATAAGCACCACTGGGTTAATTG...CAAGCAGCAGCGCCGTGGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp GAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTTGGGGCATTGGAGCAATGGGCACTaGGGAGTCCAGGGAGCTTGT +
Preference number: 4 (lower is better)
Translates to: ECISYHHCLTNFYCVLGHWSNGH*GVQGAC
Trigger: ACAAGCTCCCTGGACTCCGCAGTGCCCATTGCTCCA...ATGCCCCAAGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp CACACCACTGTGGGAATCCGGTATCACATGCAAGATGGCGGAGAAATCACGATGATAGAGACTTTAGCTTaGGAGGCATTCGTCACCGCC +
Preference number: 4 (lower is better)
Translates to: HTTVGIRYHMQDGGEITMIETLA*EAFVTA
Trigger: GGCGGTGACGAATGCCTCCCAAGCTAAAGTCTCTAT...CATCGTGATTTCTCCGCCATCTTGCATGTGATACCGGATTCCCACAGTGGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp CAATTCAAGTCTAGAGGGAACAGCGTGTACAGAGACACTAAAACAGATGAGGCTGAGTCACTGCTGCCGTaGGGCGTTCCTGGCTATGTG +
Preference number: 4 (lower is better)
Translates to: QFKSRGNSVYRDTKTDEAESLLP*GVPGYV
Trigger: CACATAGCCAGGAACGCCCCACGGCAGCAGTGACTC...AGCCTCATCTGTTTTAGTGTCTCTGTACACGCTGTTCCCTCTAGACTTGAATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp CAATTCAAGTCTAGAGGGAACAGCGTGTACAGAGACACTAAAACAGATGAGGCTGCGGCATTCTGGACCTaGATGGGAGTCACTGCTGCC +
Preference number: 4 (lower is better)
Translates to: QFKSRGNSVYRDTKTDEAAAFWT*MGVTAA
Trigger: GGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGC...AGCCTCATCTGTTTTAGTGTCTCTGTACACGCTGTTCCCTCTAGACTTGAATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp CAACCTTTGGGTTGTGACCTCCGGACAACTGATTCATACAGTAGCACAATTCCAGGCACTGGTCATATTTaGGGAGGCCAGAGAAGCCCC +
Preference number: 4 (lower is better)
Translates to: QPLGCDLRTTDSYSSTIPGTGHI*GGQRSP
Trigger: GGGGCTTCTCTGGCCTCCCCAAATATGACCAGTGCC...TGGAATTGTGCTACTGTATGAATCAGTTGTCCGGAGGTCACAACCCAAAGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp CAACCTTTGGGTTGTGACCTCCGGACAACTGATTCATACAGTAGCACAATTCCACTCGGGGCTTGCGTTTaGTGGAGGCACCAGAAAGCA +
Preference number: 4 (lower is better)
Translates to: QPLGCDLRTTDSYSSTIPLGACV*WRHQKA
Trigger: TGCTTTCTGGTGCCTCCACCAAACGCAAGCCCCGAG...TGGAATTGTGCTACTGTATGAATCAGTTGTCCGGAGGTCACAACCCAAAGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR CAA 72 bp GGCTCTGGAGTCAGGTGCCCATCTTCTGCTCGGTTCTaGAAGATCTGGAAGTCCACAGATGTGCTCTTTCTA +
Preference number: 4 (lower is better)
Translates to: GSGVRCPSSARF*KIWKSTDVLFL
Trigger: TAGAAAGAGCACATCTGTGGACTTCCAGATCTTCAAGAACCGAGCAGAAGATGGGCACCTGACTCCAGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CAA 72 bp GTCGACTTCTCATCCCCACCACGGTGTGACAAGCCCTaGTTACAACATCCATCTACTGTCTCCAAAAAGCCC +
Preference number: 4 (lower is better)
Translates to: VDFSSPPRCDKP*LQHPSTVSKKP
Trigger: GGGCTTTTTGGAGACAGTAGATGGATGTTGTAACAAGGGCTTGTCACACCGTGGTGGGGATGAGAAGTCGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp GCTGTCTGTTTGGAAAACTGGCATTTTTGTCTAAACGGAGCCAAATATAACGGCCTGGATATGAGCTGCTaGCACCACAGCCGTGGGGAC +
Preference number: 4 (lower is better)
Translates to: AVCLENWHFCLNGAKYNGLDMSC*HHSRGD
Trigger: GTCCCCACGGCTGTGGTGTCAGCAGCTCATATCCAG...GCCGTTATATTTGGCTCCGTTTAGACAAAAATGCCAGTTTTCCAAACAGACAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp GAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTTGGGGCATCATTGCGGGCCTGATTaGCTGTCATCTGCCCAGACA +
Preference number: 4 (lower is better)
Translates to: ECISYHHCLTNFYCVLGHHCGPD*LSSAQT
Trigger: TGTCTGGGCAGATGACAGTCAATCAGGCCCGCAATG...ATGCCCCAAGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp GACACCGTCACCAGCTCAGCAACAGAGAGAATGCCAACTGAAGGGAACATCTCTAGTTTTCATCCACTCTaGGGATCACGGTCAGTACGT +
Preference number: 4 (lower is better)
Translates to: DTVTSSATERMPTEGNISSFHPL*GSRSVR
Trigger: ACGTACTGACCGTGATCCGCAGAGTGGATGAAAACT...AGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp GCTGTCTGTTTGGAAAACTGGCATTTTTGTCTAAACGGAGCCAAATATAACGGCAGGTATTCCCCTCACTaGGGGGCTCCAGGCTTGCAC +
Preference number: 4 (lower is better)
Translates to: AVCLENWHFCLNGAKYNGRYSPH*GAPGLH
Trigger: GTGCAAGCCTGGAGCCCCCCAGTGAGGGGAATACCT...GCCGTTATATTTGGCTCCGTTTAGACAAAAATGCCAGTTTTCCAAACAGACAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp ATCTTCTGCTCGGTTCTTGAAGATCTGGAAGTCCACAGATGTGCTCTTTCTATGAGGCAGGCGGCATTCTaGACCTGGATGGGAGTCACT +
Preference number: 4 (lower is better)
Translates to: IFCSVLEDLEVHRCALSMRQAAF*TWMGVT
Trigger: AGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCT...CATAGAAAGAGCACATCTGTGGACTTCCAGATCTTCAAGAACCGAGCAGAAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp TCTCCAAAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAGCAGGCCTGGCGAGGTaGTGGAGCAATGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: SPKSPIQNPHIISPSDLPAGLAR*WSNGHC
Trigger: GCAGTGCCCATTGCTCCACCACCTCGCCAGGCCTGC...TGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTTTGGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp AAAACAGAACAGAGATTTCAATGCGCTCACTGCATGCTGCTTCCTCGGGTAATGACACTGGGACGAGTCTaGGGCCGTAAATGTGCAATC +
Preference number: 4 (lower is better)
Translates to: KTEQRFQCAHCMLLPRVMTLGRV*GRKCAI
Trigger: GATTGCACATTTACGGCCTCAGACTCGTCCCAGTGT...CATTACCCGAGGAAGCAGCATGCAGTGAGCGCATTGAAATCTCTGTTCTGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR TCA 90 bp AGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTTGTTTATCTTCCACATCCAGGGTAGGTaGTGCTGGAGGGGAGACTCG +
Preference number: 4 (lower is better)
Translates to: RECQLKGTSLQTGSLFIFHIQGR*CWRGDS
Trigger: CGAGTCTCCCCTCCAGCATCACCTACCCTGGATGTG...GAAGATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp GACACCGTCACCAGCTCAGCAACAGAGAGAATGCCAACTGAAGGGAACATCTCTCGTTTGCAAAAGGTATaGTGGCAGGGTAAGACCTTT +
Preference number: 4 (lower is better)
Translates to: DTVTSSATERMPTEGNISRLQKV*WQGKTF
Trigger: AAAGGTCTTACCCTGCCAGCATACCTTTTGCAAACG...AGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTGAGCTGGTGACGGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp CAAAGCCAAAATCGCTCTAAGAATGCTGATCATTCTGAGTCTATGAACCAAGAAGCTTGCACCCGAGGCTaGTGTCCACACTGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: QSQNRSKNADHSESMNQEACTRG*CPHWEL
Trigger: GAGCTCCCAGTGTGGACAGCAGCCTCGGGTGCAAGC...TTCTTGGTTCATAGACTCAGAATGATCAGCATTCTTAGAGCGATTTTGGCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp ATCTTCTGCTCGGTTCTTGAAGATCTGGAAGTCCACAGATGTGCTCTTTCTATGAGTCGTAAAGTGCTTTaGACTGAGGCGGGGGCTGAG +
Preference number: 4 (lower is better)
Translates to: IFCSVLEDLEVHRCALSMSRKVL*TEAGAE
Trigger: CTCAGCCCCCGCCTCAGTGCAAAGCACTTTACGACT...CATAGAAAGAGCACATCTGTGGACTTCCAGATCTTCAAGAACCGAGCAGAAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp ATTTCCAGTCAATGGTTGTGCTTTAGTTTGCGTCTTTCTTTACCCACTTCGTTTTTCGCTGATGCGGGCTaGGGCTGTGGGGTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: ISSQWLCFSLRLSLPTSFFADAG*GCGVAG
Trigger: TCCAGCAACCCCACAGCCGCAGCCCGCATCAGCGAA...AAACGAAGTGGGTAAAGAAAGACGCAAACTAAAGCACAACCATTGACTGGAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp CAAAGCCAAAATCGCTCTAAGAATGCTGATCATTCTGAGTCTATGAACCAAGAAGGGAGACTCGGGGCTTaGGTTTGGTGGAGGCACCAG +
Preference number: 4 (lower is better)
Translates to: QSQNRSKNADHSESMNQEGRLGA*VWWRHQ
Trigger: CTGGTGCCTCCACCAAACGCAAGCCCCGAGTCTCCC...TTCTTGGTTCATAGACTCAGAATGATCAGCATTCTTAGAGCGATTTTGGCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp TTTAACACGAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTCCAGGGAGCTTGTCTTaGGGTGGAAGGCATCCTGGG +
Preference number: 4 (lower is better)
Translates to: FNTSASLTTTVSQTFTVSPGSLS*GGRHPG
Trigger: CCCAGGATGCCTTCCACCGCAAGACAAGCTCCCTGG...AGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTCGTGTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp AGTCCATTAGACATTACAAGGCACACTTTACACATCAGAACCCAGAGAGACGGATCTGCACGAAGTTGGTaGGGAAAAAGCCGTGGACCC +
Preference number: 4 (lower is better)
Translates to: SPLDITRHTLHIRTQRDGSARSW*GKSRGP
Trigger: GGGTCCACGGCTTTTTCCCCACCAACTTCGTGCAGA...TCCGTCTCTCTGGGTTCTGATGTGTAAAGTGTGCCTTGTAATGTCTAATGGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp AGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTTGTTTATCTTCTGCCGTGTCCACTCCTaGCACGGGAGGCTTATCCCA +
Preference number: 4 (lower is better)
Translates to: RECQLKGTSLQTGSLFIFCRVHS*HGRLIP
Trigger: TGGGATAAGCCTCCCGTGCCAGGAGTGGACACGGCA...GAAGATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp TCTCCAAACTGGAAGTTTGTTTATCTTCTACAATTCAAGTCTAGAGGGAACAGCAGCAGGACCCGCCATTaGAGGCAGAGGTTGGGAGGC +
Preference number: 4 (lower is better)
Translates to: SPNWKFVYLLQFKSRGNSSRTRH*RQRLGG
Trigger: GCCTCCCAACCTCTGCCTCCAATGGCGGGTCCTGCT...GCTGTTCCCTCTAGACTTGAATTGTAGAAGATAAACAAACTTCCAGTTTGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp TTTAACACGAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTGGAGTCCAGGGAGGATaGTCACTGTGCGACCACTGG +
Preference number: 4 (lower is better)
Translates to: FNTSASLTTTVSQTFTVSGVQGG*SLCDHW
Trigger: CCAGTGGTCGCACAGTGACCATCCTCCCTGGACTCC...AGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTCGTGTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp AGTCCATTAGACATTACAAGGCACACTTTACACATCAGAACCCAGAGAGACGGAACCACAGTGCTGCCCTaGGCCCTTAATGTGTTTGTG +
Preference number: 4 (lower is better)
Translates to: SPLDITRHTLHIRTQRDGTTVLP*ALNVFV
Trigger: CACAAACACATTAAGGGCGCAGGGCAGCACTGTGGT...TCCGTCTCTCTGGGTTCTGATGTGTAAAGTGTGCCTTGTAATGTCTAATGGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp GGGAACATTTTTAGGGTAACATGTCATTTCAAAGCTGGCTTAATATCAGTCAGATTCGCTGATGCGGGCTaGGGCTGTGGGGTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: GNIFRVTCHFKAGLISVRFADAG*GCGVAG
Trigger: TCCAGCAACCCCACAGCCGCAGCCCGCATCAGCGAA...TCTGACTGATATTAAGCCAGCTTTGAAATGACATGTTACCCTAAAAATGTTCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp AAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAACAGATGATGGGAGTCACTGCTaGCGTGGGGCGTTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: KSPIQNPHIISPSDLPTDDGSHC*RGAFLA
Trigger: AGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATC...ATCTGTTGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp AAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAACAGATCTGGATGGGAGTCACTaGTGCCGTGGGGCGTTCCTG +
Preference number: 4 (lower is better)
Translates to: KSPIQNPHIISPSDLPTDLDGSH*CRGAFL
Trigger: CAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAG...ATCTGTTGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp AAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAACAGATGGACCTACTGCTCCCTaGAAGGGAGCCTCCCCAGCA +
Preference number: 4 (lower is better)
Translates to: KSPIQNPHIISPSDLPTDGPTAP*KGASPA
Trigger: TGCTGGGGAGGCTCCCTTGCAGGGAGCAGTAGGTCC...ATCTGTTGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp AGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTTGTTTATCTTCCGGTTCTGGGACCCCTaGGAAGACTTGTTGGCCATG +
Preference number: 4 (lower is better)
Translates to: RECQLKGTSLQTGSLFIFRFWDP*EDLLAM
Trigger: CATGGCCAACAAGTCTTCCCAGGGGTCCCAGAACCG...GAAGATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp CAGCAACAGAGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTTGTTGTACCAGCCGTCCTaGCAACGCTCAAACACCAAA +
Preference number: 4 (lower is better)
Translates to: QQQRECQLKGTSLQTGSLLYQPS*QRSNTK
Trigger: TTTGGTGTTTGAGCGTTGCCAGGACGGCTGGTACAA...CAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp TTTAACACGAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTCTCGGGGCTTGCGTTTaGTGGAGGCACCAGAAAGCA +
Preference number: 4 (lower is better)
Translates to: FNTSASLTTTVSQTFTVSLGACV*WRHQKA
Trigger: TGCTTTCTGGTGCCTCCACCAAACGCAAGCCCCGAG...AGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTCGTGTTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp AAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAACAGATGAGGTGGTGGAGCAATaGGCACTGCGGAGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: KSPIQNPHIISPSDLPTDEVVEQ*ALRSPG
Trigger: CCCTGGACTCCGCAGTGCCCATTGCTCCACCACCTC...ATCTGTTGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp GCTGTCTGTTTGGAAAACTGGCATTTTTGTCTAAACGGAGCCAAATATAACGGCACACTGGGACGAGTCTaGGGCCGTAAATGTGCAATC +
Preference number: 4 (lower is better)
Translates to: AVCLENWHFCLNGAKYNGTLGRV*GRKCAI
Trigger: GATTGCACATTTACGGCCTCAGACTCGTCCCAGTGT...GCCGTTATATTTGGCTCCGTTTAGACAAAAATGCCAGTTTTCCAAACAGACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp TTAACCAGCGTTATACCAGGAAGCTATTACCACGGATACTTCAATCACATAGCTACTGTTCCCACACGCTaGTGCAGCACTCTCTGGAGA +
Preference number: 4 (lower is better)
Translates to: LTSVIPGSYYHGYFNHIATVPTR*CSTLWR
Trigger: TCTCCAGAGAGTGCTGCATCAGCGTGTGGGAACAGT...AGCTATGTGATTGAAGTATCCGTGGTAATAGCTTCCTGGTATAACGCTGGTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp GGAGCAAACATACTTAAGACATCTCGGTCAGTAGTGGTGGTGGTGGTGGGGGCATCCTCTCGTTTCTTATaGACAAACACAATATCTCCT +
Preference number: 4 (lower is better)
Translates to: GANILKTSRSVVVVVVGASSRFL*TNTISP
Trigger: AGGAGATATTGTGTTTGTTCATAAGAAACGAGAGGA...TGCCCCCACCACCACCACCACTACTGACCGAGATGTCTTAAGTATGTTTGCTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp GAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTTGGGGCATAGTTTTCATCCACTCTaGGGATCACGGTCAGTACGT +
Preference number: 4 (lower is better)
Translates to: ECISYHHCLTNFYCVLGHSFHPL*GSRSVR
Trigger: ACGTACTGACCGTGATCCGCAGAGTGGATGAAAACT...ATGCCCCAAGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp TACACACACCATGCACAGTCCACACCACTGTGGGAATCCGGTATCACATGCAAGTATTCCTATTTTATCTaGCAGCATTCCTTCAGCCCA +
Preference number: 4 (lower is better)
Translates to: YTHHAQSTPLWESGITCKYSYFI*QHSFSP
Trigger: TGGGCTGAAGGAATGCTGGCAGATAAAATAGGAATA...CTTGCATGTGATACCGGATTCCCACAGTGGTGTGGACTGTGCATGGTGTGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp CAACCTTTGGGTTGTGACCTCCGGACAACTGATTCATACAGTAGCACAATTCCATTCCTGGCTATGTGCTaGAACTGTCCTCACAGCATT +
Preference number: 4 (lower is better)
Translates to: QPLGCDLRTTDSYSSTIPFLAMC*NCPHSI
Trigger: AATGCTGTGAGGACAGTTGCAGCACATAGCCAGGAA...TGGAATTGTGCTACTGTATGAATCAGTTGTCCGGAGGTCACAACCCAAAGGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp TCTCCAAACTGGAAGTTTGTTTATCTTCTACAATTCAAGTCTAGAGGGAACAGCTGGAGCAATGGGCACTaGGGAGTCCAGGGAGCTTGT +
Preference number: 4 (lower is better)
Translates to: SPNWKFVYLLQFKSRGNSWSNGH*GVQGAC
Trigger: ACAAGCTCCCTGGACTCCGCAGTGCCCATTGCTCCA...GCTGTTCCCTCTAGACTTGAATTGTAGAAGATAAACAAACTTCCAGTTTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp TCTCCAAAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCACATTCTGGACCTGGATaGGAGTCACTGCTGCCGTGG +
Preference number: 4 (lower is better)
Translates to: SPKSPIQNPHIISPSDLPHSGPG*ESLLPW
Trigger: CCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATG...TGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTTTGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp GCTGTCTGTTTGGAAAACTGGCATTTTTGTCTAAACGGAGCCAAATATAACGGCTGCCATCCAGAAGTCTaGCCAGTAGGATGTTACTGG +
Preference number: 4 (lower is better)
Translates to: AVCLENWHFCLNGAKYNGCHPEV*PVGCYW
Trigger: CCAGTAACATCCTACTGGTCAGACTTCTGGATGGCA...GCCGTTATATTTGGCTCCGTTTAGACAAAAATGCCAGTTTTCCAAACAGACAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp ATTTTTAGGGTAACATGTCATTTCAAAGCTGGCTTAATATCAGTCAGAGCTACACTGGATATGAGCTGCTaGCACCACAGCCGTGGGGAC +
Preference number: 4 (lower is better)
Translates to: IFRVTCHFKAGLISVRATLDMSC*HHSRGD
Trigger: GTCCCCACGGCTGTGGTGTCAGCAGCTCATATCCAG...TGTAGCTCTGACTGATATTAAGCCAGCTTTGAAATGACATGTTACCCTAAAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp ATTTCCAGTCAATGGTTGTGCTTTAGTTTGCGTCTTTCTTTACCCACTTCGTTTTTCTTGGTGTCGGGGTaGTTTGAGGCAGAGGTGCTC +
Preference number: 4 (lower is better)
Translates to: ISSQWLCFSLRLSLPTSFFLVSG*FEAEVL
Trigger: GAGCACCTCTGCCTCAAAGCACCCCGACACCAAGAA...AAACGAAGTGGGTAAAGAAAGACGCAAACTAAAGCACAACCATTGACTGGAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp CAGCAACAGAGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTTGCCTATCTTGCTGGTATaGATCGATGTCCCTTTGTAC +
Preference number: 4 (lower is better)
Translates to: QQQRECQLKGTSLQTGSLPILLV*IDVPLY
Trigger: GTACAAAGGGACATCGATGCATACCAGCAAGATAGG...CAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCTCTGTTGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp GTGTGCTGGCTAACGTGTGCCTTCACCCGAGAGGGAGCAAACATACTTAAGACAAGTTATATAATGCTTTaGCACACGGTAACTGAGGTA +
Preference number: 4 (lower is better)
Translates to: VCWLTCAFTREGANILKTSYIML*HTVTEV
Trigger: TACCTCAGTTACCGTGTGCCAAAGCATTATATAACT...TGTCTTAAGTATGTTTGCTCCCTCTCGGGTGAAGGCACACGTTAGCCAGCACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp ATTTTTAGGGTAACATGTCATTTCAAAGCTGGCTTAATATCAGTCAGAGCTACACGGTGGAAGGCATCCTaGGCTAGGGCTGCTGTTCCA +
Preference number: 4 (lower is better)
Translates to: IFRVTCHFKAGLISVRATRWKAS*ARAAVP
Trigger: TGGAACAGCAGCCCTAGCCCAGGATGCCTTCCACCG...TGTAGCTCTGACTGATATTAAGCCAGCTTTGAAATGACATGTTACCCTAAAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp TTTAACACGAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTTTCCACAAAGCTCCCTaGGAAAAGGCCAGTCTTCCC +
Preference number: 4 (lower is better)
Translates to: FNTSASLTTTVSQTFTVSFHKAP*EKASLP
Trigger: GGGAAGACTGGCCTTTTCCCAGGGAGCTTTGTGGAA...AGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTCGTGTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp GGGAACATTTTTAGGGTAACATGTCATTTCAAAGCTGGCTTAATATCAGTCAGAGGCATTCGGGACATCTaGGTTCATTCCGGGAACCCA +
Preference number: 4 (lower is better)
Translates to: GNIFRVTCHFKAGLISVRGIRDI*VHSGNP
Trigger: TGGGTTCCCGGAATGAACTCAGATGTCCCGAATGCC...TCTGACTGATATTAAGCCAGCTTTGAAATGACATGTTACCCTAAAAATGTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR TCA 90 bp AGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTTGTTTATCTTCTGCCATCCAGAAGTCTaGCCAGTAGGATGTTACTGG +
Preference number: 4 (lower is better)
Translates to: RECQLKGTSLQTGSLFIFCHPEV*PVGCYW
Trigger: CCAGTAACATCCTACTGGTCAGACTTCTGGATGGCA...GAAGATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR TCA 90 bp AAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAACAGATCATCTGAAGGGAACGTaGACGCAGGGCCAGTTGTCA +
Preference number: 4 (lower is better)
Translates to: KSPIQNPHIISPSDLPTDHLKGT*TQGQLS
Trigger: TGACAACTGGCCCTGCGTTCACGTTCCCTTCAGATG...ATCTGTTGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR TCA 90 bp GGGAACATTTTTAGGGTAACATGTCATTTCAAAGCTGGCTTAATATCAGTCAGACATCTGAAGGGAACGTaGACGCAGGGCCAGTTGTCA +
Preference number: 4 (lower is better)
Translates to: GNIFRVTCHFKAGLISVRHLKGT*TQGQLS
Trigger: TGACAACTGGCCCTGCGTTCACGTTCCCTTCAGATG...TCTGACTGATATTAAGCCAGCTTTGAAATGACATGTTACCCTAAAAATGTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp ACAGAACAGAGATTTCAATGCGCTCACTGCATGCTGCTTCCTCGGGTAATGAGTTATTCCTATTTTATCTaGCAGCATTCCTTCAGCCCA +
Preference number: 4 (lower is better)
Translates to: TEQRFQCAHCMLLPRVMSYSYFI*QHSFSP
Trigger: TGGGCTGAAGGAATGCTGGCAGATAAAATAGGAATA...ACTCATTACCCGAGGAAGCAGCATGCAGTGAGCGCATTGAAATCTCTGTTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp GGGAACATTTTTAGGGTAACATGTCATTTCAAAGCTGGCTTAATATCAGTCAGAGGCTGCTGTCCACACTaGGAGCTCTGCAGATCTTTC +
Preference number: 4 (lower is better)
Translates to: GNIFRVTCHFKAGLISVRGCCPH*ELCRSF
Trigger: GAAAGATCTGCAGAGCTCCCAGTGTGGACAGCAGCC...TCTGACTGATATTAAGCCAGCTTTGAAATGACATGTTACCCTAAAAATGTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp TCTCCAAACTGGAAGTTTGTTTATCTTCTACAATTCAAGTCTAGAGGGAACAGCTCCTGGTGTTCTTCTTaGTGTCGGGGTGCTTTGAGG +
Preference number: 4 (lower is better)
Translates to: SPNWKFVYLLQFKSRGNSSWCSS*CRGALR
Trigger: CCTCAAAGCACCCCGACACCAAGAAGAACACCAGGA...GCTGTTCCCTCTAGACTTGAATTGTAGAAGATAAACAAACTTCCAGTTTGGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp CAACCTTTGGGTTGTGACCTCCGGACAACTGATTCATACAGTAGCACAATTCCATCACAATTAACCCAGTaGTGCTTATATGGACCTGAG +
Preference number: 4 (lower is better)
Translates to: QPLGCDLRTTDSYSSTIPSQLTQ*CLYGPE
Trigger: CTCAGGTCCATATAAGCACCACTGGGTTAATTGTGA...TGGAATTGTGCTACTGTATGAATCAGTTGTCCGGAGGTCACAACCCAAAGGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR CAA 72 bp GGAAGTCCACAGATGTGCTCTTTCTATGAAACTGCTTaGTGCTCTTTAGTCACACGTGGTGTGATGATAAGC +
Preference number: 4 (lower is better)
Translates to: GSPQMCSFYETA*CSLVTRGVMIS
Trigger: GCTTATCATCACACCACGTGTGACTAAAGAGCACAAAGCAGTTTCATAGAAAGAGCACATCTGTGGACTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
3UTR CAA 72 bp ACACAATGGACACGGAGGAACAGAAGGATCTCTGTGTaGGGAGGGAACATTTTTAGGGTAACATGTCATTTC +
Preference number: 4 (lower is better)
Translates to: TQWTRRNRRISV*GGNIFRVTCHF
Trigger: GAAATGACATGTTACCCTAAAAATGTTCCCTCCCAACACAGAGATCCTTCTGTTCCTCCGTGTCCATTGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp TTTAACACGAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTCGTTTGCAAAAGGTATaGTGGCAGGGTAAGACCTTT +
Preference number: 4 (lower is better)
Translates to: FNTSASLTTTVSQTFTVSRLQKV*WQGKTF
Trigger: AAAGGTCTTACCCTGCCAGCATACCTTTTGCAAACG...AGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTCGTGTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp AAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAACAGATTTCAAAGTCGTAAAGTaGTTTGCACTGAGGCGGGGG +
Preference number: 4 (lower is better)
Translates to: KSPIQNPHIISPSDLPTDFKVVK*FALRRG
Trigger: CCCCCGCCTCAGTGCAAAGCACTTTACGACTTTGAA...ATCTGTTGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp GCTGTCTGTTTGGAAAACTGGCATTTTTGTCTAAACGGAGCCAAATATAACGGCTCACAATTAACCCAGTaGTGCTTATATGGACCTGAG +
Preference number: 4 (lower is better)
Translates to: AVCLENWHFCLNGAKYNGSQLTQ*CLYGPE
Trigger: CTCAGGTCCATATAAGCACCACTGGGTTAATTGTGA...GCCGTTATATTTGGCTCCGTTTAGACAAAAATGCCAGTTTTCCAAACAGACAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp TTAACCAGCGTTATACCAGGAAGCTATTACCACGGATACTTCAATCACATAGCTAAACGCCTATCTTGCTaGTATGCATCGATGTCCCTT +
Preference number: 4 (lower is better)
Translates to: LTSVIPGSYYHGYFNHIAKRLSC*YASMSL
Trigger: AAGGGACATCGATGCATACCAGCAAGATAGGCGTTT...AGCTATGTGATTGAAGTATCCGTGGTAATAGCTTCCTGGTATAACGCTGGTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CCA 90 bp AGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTTGTTTATCTTCAAACGCCTATCTTGCTaGTATGCATCGATGTCCCTT +
Preference number: 4 (lower is better)
Translates to: RECQLKGTSLQTGSLFIFKRLSC*YASMSL
Trigger: AAGGGACATCGATGCATACCAGCAAGATAGGCGTTT...GAAGATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR GCA 90 bp TTTAACACGAGTGCATCTCTTACCACCACTGTCTCACAAACTTTTACTGTGTCTAAAGGTTTGATGATCTaGACGAAGTTGGTGGGGAAA +
Preference number: 4 (lower is better)
Translates to: FNTSASLTTTVSQTFTVSKGLMI*TKLVGK
Trigger: TTTCCCCACCAACTTCGTGCAGATCATCAAACCTTT...AGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAGAGATGCACTCGTGTTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR GCA 90 bp AGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTTGTTTATCTTCAAAGGTTTGATGATCTaGACGAAGTTGGTGGGGAAA +
Preference number: 4 (lower is better)
Translates to: RECQLKGTSLQTGSLFIFKGLMI*TKLVGK
Trigger: TTTCCCCACCAACTTCGTGCAGATCATCAAACCTTT...GAAGATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
3UTR CAA 72 bp TGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTaGTTTATCTTCTACAATTCAAGTCTAGAGGGAACA +
Preference number: 4 (lower is better)
Translates to: CQLKGTSLQTGS*FIFYNSSLEGT
Trigger: TGTTCCCTCTAGACTTGAATTGTAGAAGATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CCA 90 bp AGAGAATGCCAACTGAAGGGAACATCTCTCCAAACTGGAAGTTTGTTTATCTTCAGTTATATAATGCTTTaGCACACGGTAACTGAGGTA +
Preference number: 4 (lower is better)
Translates to: RECQLKGTSLQTGSLFIFSYIML*HTVTEV
Trigger: TACCTCAGTTACCGTGTGCCAAAGCATTATATAACT...GAAGATAAACAAACTTCCAGTTTGGAGAGATGTTCCCTTCAGTTGGCATTCTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS TCA 90 bp AGCAGCGGCGGCGGCAGCAGCAGCAGCAACAGCAGCAGTAGCGCCTaGCGGGGTGGAGGCGAGTACGGTGGCCGCCAGGAGAGGGGGTGG +
Preference number: 5 (lower is better)
Translates to: SSGGGSSSSNSSSSA*RGGGEYGGRQERGW
Trigger: CCACCCCCTCTCCTGGCGGCCACCGTACTCGCCTCCACCCCGTCAGGCGCTACTGCTGCTGTTGCTGCTGCTGCTGCCGCCGCCGCTGCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 90 bp GCAGCAGGACCCGCCATTGGAGGCAGAGGTTGGGAGGCCAGAGAATaGTGGGGCAGGCCCACGGATGCAGGACCGAGGCAGGCGGCATTC +
Preference number: 5 (lower is better)
Translates to: AAGPAIGGRGWEARE*WGRPTDAGPRQAAF
Trigger: GAATGCCGCCTGCCTCGGTCCTGCATCCGTGGGCCTGCCCCATCATTCTCTGGCCTCCCAACCTCTGCCTCCAATGGCGGGTCCTGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp GGCAGGCCCACGGATGCAGGACCGAGGCAGGCGGCATTCTGGACCTaGATGGGAGTCACTGCTGCCGTGGGGCGTTCCTGGCTATGTGCT +
Preference number: 5 (lower is better)
Translates to: GRPTDAGPRQAAFWT*MGVTAAVGRSWLCA
Trigger: AGCACATAGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTCGGTCCTGCATCCGTGGGCCTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp GGCCCACGGATGCAGGACCGAGGCAGGCGGCATTCTGGACCTGGATaGGAGTCACTGCTGCCGTGGGGCGTTCCTGGCTATGTGCTGCAA +
Preference number: 5 (lower is better)
Translates to: GPRMQDRGRRHSGPG*ESLLPWGVPGYVLQ
Trigger: TTGCAGCACATAGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTCGGTCCTGCATCCGTGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp TCGACTGATGCTGACGGCAGCACCGTGGGCAGCAGGACCCGCCATTaGAGGCAGAGGTTGGGAGGCCAGAGAATGATGGGGCAGGCCCAC +
Preference number: 5 (lower is better)
Translates to: STDADGSTVGSRTRH*RQRLGGQRMMGQAH
Trigger: GTGGGCCTGCCCCATCATTCTCTGGCCTCCCAACCTCTGCCTCCAATGGCGGGTCCTGCTGCCCACGGTGCTGCCGTCAGCATCAGTCGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp CAGGCCATGGGGGCATTGGTTCGACTGATGCTGACGGCAGCACCGTaGGCAGCAGGACCCGCCATTGGAGGCAGAGGTTGGGAGGCCAGA +
Preference number: 5 (lower is better)
Translates to: QAMGALVRLMLTAAP*AAGPAIGGRGWEAR
Trigger: TCTGGCCTCCCAACCTCTGCCTCCAATGGCGGGTCCTGCTGCCCACGGTGCTGCCGTCAGCATCAGTCGAACCAATGCCCCCATGGCCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 90 bp AGGCAGAGGTTGGGAGGCCAGAGAATGATGGGGCAGGCCCACGGATaGAGGACCGAGGCAGGCGGCATTCTGGACCTGGATGGGAGTCAC +
Preference number: 5 (lower is better)
Translates to: RQRLGGQRMMGQAHG*RTEAGGILDLDGSH
Trigger: GTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTCGGTCCTGCATCCGTGGGCCTGCCCCATCATTCTCTGGCCTCCCAACCTCTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 90 bp GAGGTGGTGGAGCAATGGGCACTGCGGAGTCCAGGGAGCTTGTCTTaGGGTGGAAGGCATCCTGGGCTAGGGCTGCTGTTCCAGCGGCCA +
Preference number: 5 (lower is better)
Translates to: EVVEQWALRSPGSLS*GGRHPGLGLLFQRP
Trigger: TGGCCGCTGGAACAGCAGCCCTAGCCCAGGATGCCTTCCACCGCAAGACAAGCTCCCTGGACTCCGCAGTGCCCATTGCTCCACCACCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp GGTGGAGCAATGGGCACTGCGGAGTCCAGGGAGCTTGTCTTGCGGTaGAAGGCATCCTGGGCTAGGGCTGCTGTTCCAGCGGCCACTGGA +
Preference number: 5 (lower is better)
Translates to: GGAMGTAESRELVLR*KASWARAAVPAATG
Trigger: TCCAGTGGCCGCTGGAACAGCAGCCCTAGCCCAGGATGCCTTCCACCGCAAGACAAGCTCCCTGGACTCCGCAGTGCCCATTGCTCCACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 90 bp CAGGTGGTCCCGCCGCCCCCACCAGGGCCGGGTTTCCAAGGCCTCTaGTTGATGCCATCCAGAAGTCTGACCAGTAGGATGTTACTGGGG +
Preference number: 5 (lower is better)
Translates to: QVVPPPPPGPGFQGL*LMPSRSLTSRMLLG
Trigger: CCCCAGTAACATCCTACTGGTCAGACTTCTGGATGGCATCAAGCAGAGGCCTTGGAAACCCGGCCCTGGTGGGGGCGGCGGGACCACCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 90 bp CTGGTGTTCTTCTTGGTGTCGGGGTGCTTTGAGGCAGAGGTGCTCTaGGCCGTCGCTGAGGGGCATTCTGCCGTGTCCACTCCTGGCACG +
Preference number: 5 (lower is better)
Translates to: LVFFLVSGCFEAEVL*AVAEGHSAVSTPGT
Trigger: CGTGCCAGGAGTGGACACGGCAGAATGCCCCTCAGCGACGGCGCAGAGCACCTCTGCCTCAAAGCACCCCGACACCAAGAAGAACACCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 90 bp AGGACCGAGGCAGGCGGCATTCTGGACCTGGATGGGAGTCACTGCTaGCGTGGGGCGTTCCTGGCTATGTGCTGCAACTGTCCTCACAGC +
Preference number: 5 (lower is better)
Translates to: RTEAGGILDLDGSHC*RGAFLAMCCNCPHS
Trigger: GCTGTGAGGACAGTTGCAGCACATAGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTCGGTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 90 bp TGCAGGACCGAGGCAGGCGGCATTCTGGACCTGGATGGGAGTCACTaGTGCCGTGGGGCGTTCCTGGCTATGTGCTGCAACTGTCCTCAC +
Preference number: 5 (lower is better)
Translates to: CRTEAGGILDLDGSH*CRGAFLAMCCNCPH
Trigger: GTGAGGACAGTTGCAGCACATAGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTCGGTCCTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp GGCACTGCGGAGTCCAGGGAGCTTGTCTTGCGGTGGAAGGCATCCTaGGCTAGGGCTGCTGTTCCAGCGGCCACTGGACCATCACCATCT +
Preference number: 5 (lower is better)
Translates to: GTAESRELVLRWKAS*ARAAVPAATGPSPS
Trigger: AGATGGTGATGGTCCAGTGGCCGCTGGAACAGCAGCCCTAGCCCAGGATGCCTTCCACCGCAAGACAAGCTCCCTGGACTCCGCAGTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp AGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACACTAGGCTGGCTGAGGTGCAGCAGGACCCGCCATaGGAGGCAGAGGTTGGGAGG +
Preference number: 5 (lower is better)
Translates to: SQAWWCTARAPDTRLAEVQQDPP*EAEVGR
Trigger: CCTCCCAACCTCTGCCTCCAATGGCGGGTCCTGCTG...CACCTCAGCCAGCCTAGTGTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS GCA 90 bp GCTTCCTGGTGTTCTTCTTGGTGTCGGGGTGCTTTGAGGCAGAGGTaGTCTGCGCCGTCGCTGAGGGGCATTCTGCCGTGTCCACTCCTG +
Preference number: 5 (lower is better)
Translates to: ASWCSSWCRGALRQR*SAPSLRGILPCPLL
Trigger: CAGGAGTGGACACGGCAGAATGCCCCTCAGCGACGGCGCAGAGCACCTCTGCCTCAAAGCACCCCGACACCAAGAAGAACACCAGGAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp GAGGCCGTAAATGTGCAATCTGTTCAGAGGACCCCATCACAGGCCTaGGTCCCATTCCAGCAGCGGCGGCGGCAGCAGCAGCAGCAACAG +
Preference number: 5 (lower is better)
Translates to: EAVNVQSVQRTPSQA*VPFQQRRRQQQQQQ
Trigger: CTGTTGCTGCTGCTGCTGCCGCCGCCGCTGCTGGAATGGGACCCAGGCCTGTGATGGGGTCCTCTGAACAGATTGCACATTTACGGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp CGAGGCAGGCGGCATTCTGGACCTGGATGGGAGTCACTGCTGCCGTaGGGCGTTCCTGGCTATGTGCTGCAACTGTCCTCACAGCATTGC +
Preference number: 5 (lower is better)
Translates to: RGRRHSGPGWESLLP*GVPGYVLQLSSQHC
Trigger: GCAATGCTGTGAGGACAGTTGCAGCACATAGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp GGATGGTCACTGTGCGACCACTGGGCTCTGTCTCCAACACGGCACTaGTCATATTTGGGGAGGCCAGAGAAGCCCCTGCAGCGCAGGCCA +
Preference number: 5 (lower is better)
Translates to: GWSLCDHWALSPTRH*SYLGRPEKPLQRRP
Trigger: TGGCCTGCGCTGCAGGGGCTTCTCTGGCCTCCCCAAATATGACCAGTGCCGTGTTGGAGACAGAGCCCAGTGGTCGCACAGTGACCATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp AGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACACTAGGCTGGCTGAGGTGTGGTGTCGGGGTGCTTaGAGGCAGAGGTGCTCTGCG +
Preference number: 5 (lower is better)
Translates to: SQAWWCTARAPDTRLAEVWCRGA*RQRCSA
Trigger: CGCAGAGCACCTCTGCCTCAAAGCACCCCGACACCA...CACCTCAGCCAGCCTAGTGTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS GCA 90 bp ATTTCCGGCCACGCCGTTTCCTTGGGGCTTCTGTGTAGGTCCTCCTaGAGTGGAAGGGCTGACCATGGTCACCCCGCGACTTGCTTGACC +
Preference number: 5 (lower is better)
Translates to: ISGHAVSLGLLCRSS*SGRADHGHPATCLT
Trigger: GGTCAAGCAAGTCGCGGGGTGACCATGGTCAGCCCTTCCACTGCAGGAGGACCTACACAGAAGCCCCAAGGAAACGGCGTGGCCGGAAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp CTGGAGATGTGGGGAGTCCAGGGAGGATGGTCACTGTGCGACCACTaGGCTCTGTCTCCAACACGGCACTGGTCATATTTGGGGAGGCCA +
Preference number: 5 (lower is better)
Translates to: LEMWGVQGGWSLCDH*ALSPTRHWSYLGRP
Trigger: TGGCCTCCCCAAATATGACCAGTGCCGTGTTGGAGACAGAGCCCAGTGGTCGCACAGTGACCATCCTCCCTGGACTCCCCACATCTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp CAGCTGAACTGTTCCCACACGCTGATGCAGCACTCTCTGGAGATGTaGGGAGTCCAGGGAGGATGGTCACTGTGCGACCACTGGGCTCTG +
Preference number: 5 (lower is better)
Translates to: QLNCSHTLMQHSLEM*GVQGGWSLCDHWAL
Trigger: CAGAGCCCAGTGGTCGCACAGTGACCATCCTCCCTGGACTCCCCACATCTCCAGAGAGTGCTGCATCAGCGTGTGGGAACAGTTCAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp CACAATTGTAAGGTGTGGGCACAGCCACTCCCAGCAAGCCTTGCCGAACAGTCCTGGTGTCGGGGTGCTTaGAGGCAGAGGTGCTCTGCG +
Preference number: 5 (lower is better)
Translates to: HNCKVWAQPLPASLAEQSWCRGA*RQRCSA
Trigger: CGCAGAGCACCTCTGCCTCAAAGCACCCCGACACCA...GGACTGTTCGGCAAGGCTTGCTGGGAGTGGCTGTGCCCACACCTTACAATTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS GCA 90 bp GAGCTCTGCAGATCTTTCGAGCCACAATTAACCACAGTGCTGCCCTaGGCCCTTAATGTGTTTGTGCAGGTGGTCCCGCCGCCCCCACCA +
Preference number: 5 (lower is better)
Translates to: ELCRSFEPQLTTVLP*ALNVFVQVVPPPPP
Trigger: TGGTGGGGGCGGCGGGACCACCTGCACAAACACATTAAGGGCGCAGGGCAGCACTGTGGTTAATTGTGGCTCGAAAGATCTGCAGAGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 90 bp GCTCGTCGACCCCAGAGCCAACAAGAGTCCGGCATTCGGGACATCTaGGTTCATTCCGGGAACCCACAATCCCCAGCAAACAGCGTTTGC +
Preference number: 5 (lower is better)
Translates to: ARRPQSQQESGIRDI*VHSGNPQSPANSVC
Trigger: GCAAACGCTGTTTGCTGGGGATTGTGGGTTCCCGGAATGAACTCAGATGTCCCGAATGCCGGACTCTTGTTGGCTCTGGGGTCGACGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 90 bp CCTCCTGCAGTGGAAGGGCTGACCATGGTCACCCCGCGACTTGCTTaGCCCGCAGTAGACATAGAGACTTTAGCTTGGGAGGCATTCGTC +
Preference number: 5 (lower is better)
Translates to: PPAVEGLTMVTPRLA*PAVDIETLAWEAFV
Trigger: GACGAATGCCTCCCAAGCTAAAGTCTCTATGTCTACTGCGGGTCAAGCAAGTCGCGGGGTGACCATGGTCAGCCCTTCCACTGCAGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 90 bp CAGCACTCTCTGGAGATGTGGGGAGTCCAGGGAGGATGGTCACTGTaGGACCACTGGGCTCTGTCTCCAACACGGCACTGGTCATATTTG +
Preference number: 5 (lower is better)
Translates to: QHSLEMWGVQGGWSL*DHWALSPTRHWSYL
Trigger: CAAATATGACCAGTGCCGTGTTGGAGACAGAGCCCAGTGGTCGCACAGTGACCATCCTCCCTGGACTCCCCACATCTCCAGAGAGTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp TTTCCTAGCAAGACTACAAGTCAGGCATGGTGGTGCACAGCAAGAGCGCCAGACGGCCACGCCGTTTCCTaGGGGCTTCTGTGTAGGTCC +
Preference number: 5 (lower is better)
Translates to: FPSKTTSQAWWCTARAPDGHAVS*GLLCRS
Trigger: GGACCTACACAGAAGCCCCAAGGAAACGGCGTGGCC...GTCTGGCGCTCTTGCTGTGCACCACCATGCCTGACTTGTAGTCTTGCTAGGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS TCA 90 bp AAGTGGAGGATTCATACTTCCAAGGGCAGCTTGGTAGGGGACATCTaGAGGGAACGTGAACGCAGGGCCAGTTGTCACCGGGCTGCTAGG +
Preference number: 5 (lower is better)
Translates to: KWRIHTSKGSLVGDI*RERERRASCHRAAR
Trigger: CCTAGCAGCCCGGTGACAACTGGCCCTGCGTTCACGTTCCCTTCAGATGTCCCCTACCAAGCTGCCCTTGGAAGTATGAATCCTCCACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 90 bp CGTTCCTGGCTATGTGCTGCAACTGTCCTCACAGCATTGCGGGCCTaGTTGACTGTCATCTGCCCAGACATGTGCAGCAGGACCTTAGCC +
Preference number: 5 (lower is better)
Translates to: RSWLCAATVLTALRA*LTVICPDMCSRTLA
Trigger: GGCTAAGGTCCTGCTGCACATGTCTGGGCAGATGACAGTCAATCAGGCCCGCAATGCTGTGAGGACAGTTGCAGCACATAGCCAGGAACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 90 bp AGGTCCTCCTGCAGTGGAAGGGCTGACCATGGTCACCCCGCGACTTaGTTGACCCGCAGTAGACATAGAGACTTTAGCTTGGGAGGCATT +
Preference number: 5 (lower is better)
Translates to: RSSCSGRADHGHPAT*LTRSRHRDFSLGGI
Trigger: AATGCCTCCCAAGCTAAAGTCTCTATGTCTACTGCGGGTCAAGCAAGTCGCGGGGTGACCATGGTCAGCCCTTCCACTGCAGGAGGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp AGGGGCAGGGGCAGGGAAGAGATCGCTGTGTATGTTAAACCTCCTGTTATCGGTGCTGCGGCTGTGGGGTaGCTGGAACTGATGAGCACA +
Preference number: 5 (lower is better)
Translates to: RGRGREEIAVYVKPPVIGAAAVG*LELMST
Trigger: TGTGCTCATCAGTTCCAGCAACCCCACAGCCGCAGC...ACCGATAACAGGAGGTTTAACATACACAGCGATCTCTTCCCTGCCCCTGCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp TACACACACCATGCACAGTCCACACCACTGTGGGAATCCGGTATCACATGCAAGCCCTGGGAAGACTTGTaGGCCATGGTGAGGGAGGTG +
Preference number: 5 (lower is better)
Translates to: YTHHAQSTPLWESGITCKPWEDL*AMVREV
Trigger: CACCTCCCTCACCATGGCCAACAAGTCTTCCCAGGG...CTTGCATGTGATACCGGATTCCCACAGTGGTGTGGACTGTGCATGGTGTGTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp CTGAGAACACAATGGACACGGAGGAACAGAAGGATCTCTGTGTTGGGAGGGAACCCCTGGGAAGACTTGTaGGCCATGGTGAGGGAGGTG +
Preference number: 5 (lower is better)
Translates to: LRTQWTRRNRRISVLGGNPWEDL*AMVREV
Trigger: CACCTCCCTCACCATGGCCAACAAGTCTTCCCAGGG...GTTCCCTCCCAACACAGAGATCCTTCTGTTCCTCCGTGTCCATTGTGTTCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS CCA 90 bp CGGGAACCCACAATCCCCAGCAAACAGCGTTTGCAAAAGGTATGCTaGCAGGGTAAGACCTTTGCGGAAGCATCCAGGCGTTCTAGACAC +
Preference number: 5 (lower is better)
Translates to: REPTIPSKQRLQKVC*QGKTFAEASRRSRH
Trigger: GTGTCTAGAACGCCTGGATGCTTCCGCAAAGGTCTTACCCTGCCAGCATACCTTTTGCAAACGCTGTTTGCTGGGGATTGTGGGTTCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp AACTACGGTTCAAAGCCACTCACACACAGAGACTACCACTTTCTCTCACTTCCCGGCCACGCCGTTTCCTaGGGGCTTCTGTGTAGGTCC +
Preference number: 5 (lower is better)
Translates to: NYGSKPLTHRDYHFLSLPGHAVS*GLLCRS
Trigger: GGACCTACACAGAAGCCCCAAGGAAACGGCGTGGCC...GGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTGGCTTTGAACCGTAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS GCA 90 bp TTCCGGGAACCCACAATCCCCAGCAAACAGCGTTTGCAAAAGGTATaGTGGCAGGGTAAGACCTTTGCGGAAGCATCCAGGCGTTCTAGA +
Preference number: 5 (lower is better)
Translates to: FREPTIPSKQRLQKV*WQGKTFAEASRRSR
Trigger: TCTAGAACGCCTGGATGCTTCCGCAAAGGTCTTACCCTGCCAGCATACCTTTTGCAAACGCTGTTTGCTGGGGATTGTGGGTTCCCGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 90 bp CCTATCTTGCTGGTATGCATCGATGTCCCTTTGTACCAGCCGTCCTaGCAACGCTCAAACACCAAAAACATCTCCCCTTTCCTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: PILLVCIDVPLYQPS*QRSNTKNISPFLSS
Trigger: GGAGCTGAGGAAAGGGGAGATGTTTTTGGTGTTTGAGCGTTGCCAGGACGGCTGGTACAAAGGGACATCGATGCATACCAGCAAGATAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp GGAGCAAACATACTTAAGACATCTCGGTCAGTAGTGGTGGTGGTGGTGGGGGCAGGGAAAACGCCTATCTaGCTGGTATGCATCGATGTC +
Preference number: 5 (lower is better)
Translates to: GANILKTSRSVVVVVVGAGKTPI*LVCIDV
Trigger: GACATCGATGCATACCAGCAAGATAGGCGTTTTCCC...TGCCCCCACCACCACCACCACTACTGACCGAGATGTCTTAAGTATGTTTGCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp CTGAGAACACAATGGACACGGAGGAACAGAAGGATCTCTGTGTTGGGAGGGAACGGGAAAACGCCTATCTaGCTGGTATGCATCGATGTC +
Preference number: 5 (lower is better)
Translates to: LRTQWTRRNRRISVLGGNGKTPI*LVCIDV
Trigger: GACATCGATGCATACCAGCAAGATAGGCGTTTTCCC...GTTCCCTCCCAACACAGAGATCCTTCTGTTCCTCCGTGTCCATTGTGTTCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp TTAACCAGCGTTATACCAGGAAGCTATTACCACGGATACTTCAATCACATAGCTCAGCAGGACCCGCCATaGGAGGCAGAGGTTGGGAGG +
Preference number: 5 (lower is better)
Translates to: LTSVIPGSYYHGYFNHIAQQDPP*EAEVGR
Trigger: CCTCCCAACCTCTGCCTCCAATGGCGGGTCCTGCTG...AGCTATGTGATTGAAGTATCCGTGGTAATAGCTTCCTGGTATAACGCTGGTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp AGTCCATTAGACATTACAAGGCACACTTTACACATCAGAACCCAGAGAGACGGACGGCACTGGTCATATTaGGGGAGGCCAGAGAAGCCC +
Preference number: 5 (lower is better)
Translates to: SPLDITRHTLHIRTQRDGRHWSY*GRPEKP
Trigger: GGGCTTCTCTGGCCTCCCCAAATATGACCAGTGCCG...TCCGTCTCTCTGGGTTCTGATGTGTAAAGTGTGCCTTGTAATGTCTAATGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp AACTACGGTTCAAAGCCACTCACACACAGAGACTACCACTTTCTCTCACTTCCCCTCTGTAACGTGCCTTaGAACCAGCCGTCCTCTCGT +
Preference number: 5 (lower is better)
Translates to: NYGSKPLTHRDYHFLSLPLCNVP*NQPSSR
Trigger: ACGAGAGGACGGCTGGTTCAAAGGCACGTTACAGAG...GGGAAGTGAGAGAAAGTGGTAGTCTCTGTGTGTGAGTGGCTTTGAACCGTAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp CTGAGAACACAATGGACACGGAGGAACAGAAGGATCTCTGTGTTGGGAGGGAACATGATGATGTCGCCTTaGCTGAACTTAAGGTCTCCG +
Preference number: 5 (lower is better)
Translates to: LRTQWTRRNRRISVLGGNMMMSP*LNLRSP
Trigger: CGGAGACCTTAAGTTCAGCAAAGGCGACATCATCAT...GTTCCCTCCCAACACAGAGATCCTTCTGTTCCTCCGTGTCCATTGTGTTCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp CTTACCACCACTGTCTCACAAACTTTTACTGTGTCTTGGGGCATGCGGATCACTTTCCTGGTGTTCTTCTaGGTGTCGGGGTGCTTTGAG +
Preference number: 5 (lower is better)
Translates to: LTTTVSQTFTVSWGMRITFLVFF*VSGCFE
Trigger: CTCAAAGCACCCCGACACCAAGAAGAACACCAGGAA...AGTGATCCGCATGCCCCAAGACACAGTAAAAGTTTGTGAGACAGTGGTGGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp CAACCTTTGGGTTGTGACCTCCGGACAACTGATTCATACAGTAGCACAATTCCATTCCTGGTGTTCTTCTaGGTGTCGGGGTGCTTTGAG +
Preference number: 5 (lower is better)
Translates to: QPLGCDLRTTDSYSSTIPFLVFF*VSGCFE
Trigger: CTCAAAGCACCCCGACACCAAGAAGAACACCAGGAA...TGGAATTGTGCTACTGTATGAATCAGTTGTCCGGAGGTCACAACCCAAAGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp CAAAGCCAAAATCGCTCTAAGAATGCTGATCATTCTGAGTCTATGAACCAAGAAGCTGCGGCTGTGGGGTaGCTGGAACTGATGAGCACA +
Preference number: 5 (lower is better)
Translates to: QSQNRSKNADHSESMNQEAAAVG*LELMST
Trigger: TGTGCTCATCAGTTCCAGCAACCCCACAGCCGCAGC...TTCTTGGTTCATAGACTCAGAATGATCAGCATTCTTAGAGCGATTTTGGCTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp ATGAACCAAGAAAGCCATGGGAACCTACGCTGTGTTCTGTCTCAGGAGACAGGATCTTTCTTACTGTCCTaGTCTGGTTTCCCAGCTGAA +
Preference number: 5 (lower is better)
Translates to: MNQESHGNLRCVLSQETGSFLLS*SGFPAE
Trigger: TTCAGCTGGGAAACCAGACAAGGACAGTAAGAAAGA...TCCTGTCTCCTGAGACAGAACACAGCGTAGGTTCCCATGGCTTTCTTGGTTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp TTAACCAGCGTTATACCAGGAAGCTATTACCACGGATACTTCAATCACATAGCTATGATCTGCACGAAGTaGGTGGGGAAAAAGCCGTGG +
Preference number: 5 (lower is better)
Translates to: LTSVIPGSYYHGYFNHIAMICTK*VGKKPW
Trigger: CCACGGCTTTTTCCCCACCAACTTCGTGCAGATCAT...AGCTATGTGATTGAAGTATCCGTGGTAATAGCTTCCTGGTATAACGCTGGTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp ATTTTTAGGGTAACATGTCATTTCAAAGCTGGCTTAATATCAGTCAGAGCTACACGGCACTGGTCATATTaGGGGAGGCCAGAGAAGCCC +
Preference number: 5 (lower is better)
Translates to: IFRVTCHFKAGLISVRATRHWSY*GRPEKP
Trigger: GGGCTTCTCTGGCCTCCCCAAATATGACCAGTGCCG...TGTAGCTCTGACTGATATTAAGCCAGCTTTGAAATGACATGTTACCCTAAAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp GCTGTCTGTTTGGAAAACTGGCATTTTTGTCTAAACGGAGCCAAATATAACGGCATGATGATGTCGCCTTaGCTGAACTTAAGGTCTCCG +
Preference number: 5 (lower is better)
Translates to: AVCLENWHFCLNGAKYNGMMMSP*LNLRSP
Trigger: CGGAGACCTTAAGTTCAGCAAAGGCGACATCATCAT...GCCGTTATATTTGGCTCCGTTTAGACAAAAATGCCAGTTTTCCAAACAGACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp ATCTTCTGCTCGGTTCTTGAAGATCTGGAAGTCCACAGATGTGCTCTTTCTATGACAATATCTCCTTCCTaGAGTTCAAGTTCGGCCTCA +
Preference number: 5 (lower is better)
Translates to: IFCSVLEDLEVHRCALSMTISPS*SSSSAS
Trigger: TGAGGCCGAACTTGAACTCAAGGAAGGAGATATTGT...CATAGAAAGAGCACATCTGTGGACTTCCAGATCTTCAAGAACCGAGCAGAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp ATTTTTAGGGTAACATGTCATTTCAAAGCTGGCTTAATATCAGTCAGAGCTACAATGATCTGCACGAAGTaGGTGGGGAAAAAGCCGTGG +
Preference number: 5 (lower is better)
Translates to: IFRVTCHFKAGLISVRATMICTK*VGKKPW
Trigger: CCACGGCTTTTTCCCCACCAACTTCGTGCAGATCAT...TGTAGCTCTGACTGATATTAAGCCAGCTTTGAAATGACATGTTACCCTAAAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000209611.2
CDS-3UTR CAA 90 bp AAAAGCCCAATACAAAACCCACACATTATATCACCTAGTGATCTACCAACAGATCACTCTATCAGCTGCTaGGCAGCTGAGTTAAACTCC +
Preference number: 5 (lower is better)
Translates to: KSPIQNPHIISPSDLPTDHSISC*AAELNS
Trigger: GGAGTTTAACTCAGCTGCCAAGCAGCTGATAGAGTG...ATCTGTTGGTAGATCACTAGGTGATATAATGTGTGGGTTTTGTATTGGGCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS-3UTR CAA 90 bp ATTTCCAGTCAATGGTTGTGCTTTAGTTTGCGTCTTTCTTTACCCACTTCGTTTTCTTTCTTACTGTCCTaGTCTGGTTTCCCAGCTGAA +
Preference number: 5 (lower is better)
Translates to: ISSQWLCFSLRLSLPTSFSFLLS*SGFPAE
Trigger: TTCAGCTGGGAAACCAGACAAGGACAGTAAGAAAGA...AAACGAAGTGGGTAAAGAAAGACGCAAACTAAAGCACAACCATTGACTGGAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034060.7
CDS CCA 72 bp AGGCCCACGGATGCAGGACCGAGGCAGGCGGCATTCTaGACCTGGATGGGAGTCACTGCTGCCGTGGGGCGT +
Preference number: 6 (lower is better)
Translates to: RPTDAGPRQAAF*TWMGVTAAVGR
Trigger: ACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTCGGTCCTGCATCCGTGGGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 72 bp CCCGCCATTGGAGGCAGAGGTTGGGAGGCCAGAGAATaGTGGGGCAGGCCCACGGATGCAGGACCGAGGCAG +
Preference number: 6 (lower is better)
Translates to: PAIGGRGWEARE*WGRPTDAGPRQ
Trigger: CTGCCTCGGTCCTGCATCCGTGGGCCTGCCCCATCATTCTCTGGCCTCCCAACCTCTGCCTCCAATGGCGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp ACGGATGCAGGACCGAGGCAGGCGGCATTCTGGACCTaGATGGGAGTCACTGCTGCCGTGGGGCGTTCCTGG +
Preference number: 6 (lower is better)
Translates to: TDAGPRQAAFWT*MGVTAAVGRSW
Trigger: CCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTCGGTCCTGCATCCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp GCTGACGGCAGCACCGTGGGCAGCAGGACCCGCCATTaGAGGCAGAGGTTGGGAGGCCAGAGAATGATGGGG +
Preference number: 6 (lower is better)
Translates to: ADGSTVGSRTRH*RQRLGGQRMMG
Trigger: CCCCATCATTCTCTGGCCTCCCAACCTCTGCCTCCAATGGCGGGTCCTGCTGCCCACGGTGCTGCCGTCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp GCCAGAGAAGCCCCTGCAGCGCAGGCCATGGGGGCATaGGTTCGACTGATGCTGACGGCAGCACCGTGGGCA +
Preference number: 6 (lower is better)
Translates to: AREAPAAQAMGA*VRLMLTAAPWA
Trigger: TGCCCACGGTGCTGCCGTCAGCATCAGTCGAACCAATGCCCCCATGGCCTGCGCTGCAGGGGCTTCTCTGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 90 bp CGAGGTGGTGGAGCAATGGGCACTGCGGAGTCCAGGGAGCTTGTCTaGCGGTGGAAGGCATCCTGGGCTAGGGCTGCTGTTCCAGCGGCC +
Preference number: 6 (lower is better)
Translates to: RGGGAMGTAESRELV*RWKASWARAAVPAA
Trigger: GGCCGCTGGAACAGCAGCCCTAGCCCAGGATGCCTTCCACCGCAAGACAAGCTCCCTGGACTCCGCAGTGCCCATTGCTCCACCACCTCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 90 bp CCTGGCGAGGTGGTGGAGCAATGGGCACTGCGGAGTCCAGGGAGCTaGTCTTGCGGTGGAAGGCATCCTGGGCTAGGGCTGCTGTTCCAG +
Preference number: 6 (lower is better)
Translates to: PGEVVEQWALRSPGS*SCGGRHPGLGLLFQ
Trigger: CTGGAACAGCAGCCCTAGCCCAGGATGCCTTCCACCGCAAGACAAGCTCCCTGGACTCCGCAGTGCCCATTGCTCCACCACCTCGCCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp CCGCCGCCCCCACCAGGGCCGGGTTTCCAAGGCCTCTaGTTGATGCCATCCAGAAGTCTGACCAGTAGGATG +
Preference number: 6 (lower is better)
Translates to: PPPPPGPGFQGL*LMPSRSLTSRM
Trigger: CATCCTACTGGTCAGACTTCTGGATGGCATCAAGCAGAGGCCTTGGAAACCCGGCCCTGGTGGGGGCGGCGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp GAGGCAGGCGGCATTCTGGACCTGGATGGGAGTCACTaGTGCCGTGGGGCGTTCCTGGCTATGTGCTGCAAC +
Preference number: 6 (lower is better)
Translates to: EAGGILDLDGSH*CRGAFLAMCCN
Trigger: GTTGCAGCACATAGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp ATGCAGGACCGAGGCAGGCGGCATTCTGGACCTGGATaGGAGTCACTGCTGCCGTGGGGCGTTCCTGGCTAT +
Preference number: 6 (lower is better)
Translates to: MQDRGRRHSGPG*ESLLPWGVPGY
Trigger: ATAGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGCCTCGGTCCTGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp GAGTCCAGGGAGCTTGTCTTGCGGTGGAAGGCATCCTaGGCTAGGGCTGCTGTTCCAGCGGCCACTGGACCA +
Preference number: 6 (lower is better)
Translates to: ESRELVLRWKAS*ARAAVPAATGP
Trigger: TGGTCCAGTGGCCGCTGGAACAGCAGCCCTAGCCCAGGATGCCTTCCACCGCAAGACAAGCTCCCTGGACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp GTCGCTTCCTGGTGTTCTTCTTGGTGTCGGGGTGCTTaGAGGCAGAGGTGCTCTGCGCCGTCGCTGAGGGGC +
Preference number: 6 (lower is better)
Translates to: VASWCSSWCRGA*RQRCSAPSLRG
Trigger: GCCCCTCAGCGACGGCGCAGAGCACCTCTGCCTCAAAGCACCCCGACACCAAGAAGAACACCAGGAAGCGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp GGGGACGACGCTGGGATTTCCGGCCACGCCGTTTCCTaGGGGCTTCTGTGTAGGTCCTCCTGCAGTGGAAGG +
Preference number: 6 (lower is better)
Translates to: GDDAGISGHAVS*GLLCRSSCSGR
Trigger: CCTTCCACTGCAGGAGGACCTACACAGAAGCCCCAAGGAAACGGCGTGGCCGGAAATCCCAGCGTCGTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 90 bp CACAGCCGTGGGGACGACGCTGGGATTTCCGGCCACGCCGTTTCCTaGGGGCTTCTGTGTAGGTCCTCCTGCAGTGGAAGGGCTGACCAT +
Preference number: 6 (lower is better)
Translates to: HSRGDDAGISGHAVS*GLLCRSSCSGRADH
Trigger: ATGGTCAGCCCTTCCACTGCAGGAGGACCTACACAGAAGCCCCAAGGAAACGGCGTGGCCGGAAATCCCAGCGTCGTCCCCACGGCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp TTCTTGGTGTCGGGGTGCTTTGAGGCAGAGGTGCTCTaGGCCGTCGCTGAGGGGCATTCTGCCGTGTCCACT +
Preference number: 6 (lower is better)
Translates to: FLVSGCFEAEVL*AVAEGHSAVST
Trigger: AGTGGACACGGCAGAATGCCCCTCAGCGACGGCGCAGAGCACCTCTGCCTCAAAGCACCCCGACACCAAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp CACGCCGTTTCCTTGGGGCTTCTGTGTAGGTCCTCCTaGAGTGGAAGGGCTGACCATGGTCACCCCGCGACT +
Preference number: 6 (lower is better)
Translates to: HAVSLGLLCRSS*SGRADHGHPAT
Trigger: AGTCGCGGGGTGACCATGGTCAGCCCTTCCACTGCAGGAGGACCTACACAGAAGCCCCAAGGAAACGGCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp GCAGGCGGCATTCTGGACCTGGATGGGAGTCACTGCTaGCGTGGGGCGTTCCTGGCTATGTGCTGCAACTGT +
Preference number: 6 (lower is better)
Translates to: AGGILDLDGSHC*RGAFLAMCCNC
Trigger: ACAGTTGCAGCACATAGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp CTGGAGATGTGGGGAGTCCAGGGAGGATGGTCACTGTaGGACCACTGGGCTCTGTCTCCAACACGGCACTGG +
Preference number: 6 (lower is better)
Translates to: LEMWGVQGGWSL*DHWALSPTRHW
Trigger: CCAGTGCCGTGTTGGAGACAGAGCCCAGTGGTCGCACAGTGACCATCCTCCCTGGACTCCCCACATCTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp TATGAGCTGCTGACACCACAGCCGTGGGGACGACGCTaGGATTTCCGGCCACGCCGTTTCCTTGGGGCTTCT +
Preference number: 6 (lower is better)
Translates to: YELLTPQPWGRR*DFRPRRFLGAS
Trigger: AGAAGCCCCAAGGAAACGGCGTGGCCGGAAATCCCAGCGTCGTCCCCACGGCTGTGGTGTCAGCAGCTCATA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp TGTTCTTCTTGGTGTCGGGGTGCTTTGAGGCAGAGGTaGTCTGCGCCGTCGCTGAGGGGCATTCTGCCGTGT +
Preference number: 6 (lower is better)
Translates to: CSSWCRGALRQR*SAPSLRGILPC
Trigger: ACACGGCAGAATGCCCCTCAGCGACGGCGCAGAGCACCTCTGCCTCAAAGCACCCCGACACCAAGAAGAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp GAGTGTCGCTTCCTGGTGTTCTTCTTGGTGTCGGGGTaGTTTGAGGCAGAGGTGCTCTGCGCCGTCGCTGAG +
Preference number: 6 (lower is better)
Translates to: ECRFLVFFLVSG*FEAEVLCAVAE
Trigger: CTCAGCGACGGCGCAGAGCACCTCTGCCTCAAAGCACCCCGACACCAAGAAGAACACCAGGAAGCGACACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp GACTTGTCTGGATATGAGCTGCTGACACCACAGCCGTaGGGACGACGCTGGGATTTCCGGCCACGCCGTTTC +
Preference number: 6 (lower is better)
Translates to: DLSGYELLTPQP*GRRWDFRPRRF
Trigger: GAAACGGCGTGGCCGGAAATCCCAGCGTCGTCCCCACGGCTGTGGTGTCAGCAGCTCATATCCAGACAAGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp ACCTGGATGGGAGTCACTGCTGCCGTGGGGCGTTCCTaGCTATGTGCTGCAACTGTCCTCACAGCATTGCGG +
Preference number: 6 (lower is better)
Translates to: TWMGVTAAVGRS*LCAATVLTALR
Trigger: CCGCAATGCTGTGAGGACAGTTGCAGCACATAGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp CGGCATTCTGGACCTGGATGGGAGTCACTGCTGCCGTaGGGCGTTCCTGGCTATGTGCTGCAACTGTCCTCA +
Preference number: 6 (lower is better)
Translates to: RHSGPGWESLLP*GVPGYVLQLSS
Trigger: TGAGGACAGTTGCAGCACATAGCCAGGAACGCCCCACGGCAGCAGTGACTCCCATCCAGGTCCAGAATGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp CTGTGCGACCACTGGGCTCTGTCTCCAACACGGCACTaGTCATATTTGGGGAGGCCAGAGAAGCCCCTGCAG +
Preference number: 6 (lower is better)
Translates to: LCDHWALSPTRH*SYLGRPEKPLQ
Trigger: CTGCAGGGGCTTCTCTGGCCTCCCCAAATATGACCAGTGCCGTGTTGGAGACAGAGCCCAGTGGTCGCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp TCCATGGAGTGGCGGTTCTGGGACCCCTGGGAAGACTaGTTGGCCATGGTGAGGGAGGTGAAGGAGTGTCGC +
Preference number: 6 (lower is better)
Translates to: SMEWRFWDPWED*LAMVREVKECR
Trigger: GCGACACTCCTTCACCTCCCTCACCATGGCCAACAAGTCTTCCCAGGGGTCCCAGAACCGCCACTCCATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp GTAGGTGATGCTGGAGGGGAGACTCGGGGCTTGCGTTaGGTGGAGGCACCAGAAAGCAGCTTCAGTAGGCCC +
Preference number: 6 (lower is better)
Translates to: VGDAGGETRGLR*VEAPESSFSRP
Trigger: GGGCCTACTGAAGCTGCTTTCTGGTGCCTCCACCAAACGCAAGCCCCGAGTCTCCCCTCCAGCATCACCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp GAACTGATGAGCACAGGAGGGCTGATCTCCATGGAGTaGCGGTTCTGGGACCCCTGGGAAGACTTGTTGGCC +
Preference number: 6 (lower is better)
Translates to: ELMSTGGLISME*RFWDPWEDLLA
Trigger: GGCCAACAAGTCTTCCCAGGGGTCCCAGAACCGCCACTCCATGGAGATCAGCCCTCCTGTGCTCATCAGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp CAGCACTCTCTGGAGATGTGGGGAGTCCAGGGAGGATaGTCACTGTGCGACCACTGGGCTCTGTCTCCAACA +
Preference number: 6 (lower is better)
Translates to: QHSLEMWGVQGG*SLCDHWALSPT
Trigger: TGTTGGAGACAGAGCCCAGTGGTCGCACAGTGACCATCCTCCCTGGACTCCCCACATCTCCAGAGAGTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp ATGGAGTGGCGGTTCTGGGACCCCTGGGAAGACTTGTaGGCCATGGTGAGGGAGGTGAAGGAGTGTCGCTTC +
Preference number: 6 (lower is better)
Translates to: MEWRFWDPWEDL*AMVREVKECRF
Trigger: GAAGCGACACTCCTTCACCTCCCTCACCATGGCCAACAAGTCTTCCCAGGGGTCCCAGAACCGCCACTCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp TCCAGGGTAGGTGATGCTGGAGGGGAGACTCGGGGCTaGCGTTTGGTGGAGGCACCAGAAAGCAGCTTCAGT +
Preference number: 6 (lower is better)
Translates to: SRVGDAGGETRG*RLVEAPESSFS
Trigger: ACTGAAGCTGCTTTCTGGTGCCTCCACCAAACGCAAGCCCCGAGTCTCCCCTCCAGCATCACCTACCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 90 bp AGCTCCACATCCAGGGTAGGTGATGCTGGAGGGGAGACTCGGGGCTaGCGTTTGGTGGAGGCACCAGAAAGCAGCTTCAGTAGGCCCTTT +
Preference number: 6 (lower is better)
Translates to: SSTSRVGDAGGETRG*RLVEAPESSFSRPF
Trigger: AAAGGGCCTACTGAAGCTGCTTTCTGGTGCCTCCACCAAACGCAAGCCCCGAGTCTCCCCTCCAGCATCACCTACCCTGGATGTGGAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 90 bp CACCCCGCGACTTGCTTGACCCGCAGTAGACATAGAGACTTTAGCTaGGGAGGCATTCGTCACCGCCCTTGTGACGGGCGCCACATAGTT +
Preference number: 6 (lower is better)
Translates to: HPATCLTRSRHRDFS*GGIRHRPCDGRHIV
Trigger: AACTATGTGGCGCCCGTCACAAGGGCGGTGACGAATGCCTCCCAAGCTAAAGTCTCTATGTCTACTGCGGGTCAAGCAAGTCGCGGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp TGGGGAGTCCAGGGAGGATGGTCACTGTGCGACCACTaGGCTCTGTCTCCAACACGGCACTGGTCATATTTG +
Preference number: 6 (lower is better)
Translates to: WGVQGGWSLCDH*ALSPTRHWSYL
Trigger: CAAATATGACCAGTGCCGTGTTGGAGACAGAGCCCAGTGGTCGCACAGTGACCATCCTCCCTGGACTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp GTGATGCTGGAGGGGAGACTCGGGGCTTGCGTTTGGTaGAGGCACCAGAAAGCAGCTTCAGTAGGCCCTTTT +
Preference number: 6 (lower is better)
Translates to: VMLEGRLGACVW*RHQKAASVGPF
Trigger: AAAAGGGCCTACTGAAGCTGCTTTCTGGTGCCTCCACCAAACGCAAGCCCCGAGTCTCCCCTCCAGCATCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 90 bp TCCTCCTGCAGTGGAAGGGCTGACCATGGTCACCCCGCGACTTGCTaGACCCGCAGTAGACATAGAGACTTTAGCTTGGGAGGCATTCGT +
Preference number: 6 (lower is better)
Translates to: SSCSGRADHGHPATC*TRSRHRDFSLGGIR
Trigger: ACGAATGCCTCCCAAGCTAAAGTCTCTATGTCTACTGCGGGTCAAGCAAGTCGCGGGGTGACCATGGTCAGCCCTTCCACTGCAGGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 72 bp CCCCAGAGCCAACAAGAGTCCGGCATTCGGGACATCTaGGTTCATTCCGGGAACCCACAATCCCCAGCAAAC +
Preference number: 6 (lower is better)
Translates to: PQSQQESGIRDI*VHSGNPQSPAN
Trigger: GTTTGCTGGGGATTGTGGGTTCCCGGAATGAACTCAGATGTCCCGAATGCCGGACTCTTGTTGGCTCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 72 bp GTGGAAGGGCTGACCATGGTCACCCCGCGACTTGCTTaGCCCGCAGTAGACATAGAGACTTTAGCTTGGGAG +
Preference number: 6 (lower is better)
Translates to: VEGLTMVTPRLA*PAVDIETLAWE
Trigger: CTCCCAAGCTAAAGTCTCTATGTCTACTGCGGGTCAAGCAAGTCGCGGGGTGACCATGGTCAGCCCTTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 72 bp GTGCTGCAACTGTCCTCACAGCATTGCGGGCCTGATTaGCTGTCATCTGCCCAGACATGTGCAGCAGGACCT +
Preference number: 6 (lower is better)
Translates to: VLQLSSQHCGPD*LSSAQTCAAGP
Trigger: AGGTCCTGCTGCACATGTCTGGGCAGATGACAGTCAATCAGGCCCGCAATGCTGTGAGGACAGTTGCAGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp GCTTGCACCCGAGGCTGCTGTCCACACTGGGAGCTCTaGAGATCTTTCGAGCCACAATTAACCACAGTGCTG +
Preference number: 6 (lower is better)
Translates to: ACTRGCCPHWEL*RSFEPQLTTVL
Trigger: CAGCACTGTGGTTAATTGTGGCTCGAAAGATCTGCAGAGCTCCCAGTGTGGACAGCAGCCTCGGGTGCAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp ACTTGCTTGACCCGCAGTAGACATAGAGACTTTAGCTaGGGAGGCATTCGTCACCGCCCTTGTGACGGGCGC +
Preference number: 6 (lower is better)
Translates to: TCLTRSRHRDFS*GGIRHRPCDGR
Trigger: GCGCCCGTCACAAGGGCGGTGACGAATGCCTCCCAAGCTAAAGTCTCTATGTCTACTGCGGGTCAAGCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 72 bp ATTCATACTTCCAAGGGCAGCTTGGTAGGGGACATCTaGAGGGAACGTGAACGCAGGGCCAGTTGTCACCGG +
Preference number: 6 (lower is better)
Translates to: IHTSKGSLVGDI*RERERRASCHR
Trigger: CCGGTGACAACTGGCCCTGCGTTCACGTTCCCTTCAGATGTCCCCTACCAAGCTGCCCTTGGAAGTATGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 72 bp CTATGTGCTGCAACTGTCCTCACAGCATTGCGGGCCTaGTTGACTGTCATCTGCCCAGACATGTGCAGCAGG +
Preference number: 6 (lower is better)
Translates to: LCAATVLTALRA*LTVICPDMCSR
Trigger: CCTGCTGCACATGTCTGGGCAGATGACAGTCAATCAGGCCCGCAATGCTGTGAGGACAGTTGCAGCACATAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp AGATCTTTCGAGCCACAATTAACCACAGTGCTGCCCTaGGCCCTTAATGTGTTTGTGCAGGTGGTCCCGCCG +
Preference number: 6 (lower is better)
Translates to: RSFEPQLTTVLP*ALNVFVQVVPP
Trigger: CGGCGGGACCACCTGCACAAACACATTAAGGGCGCAGGGCAGCACTGTGGTTAATTGTGGCTCGAAAGATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp CGGGCGCCACATAGTTGCCAGGGAAAACGCCTATCTTaGTGGTATGCATCGATGTCCCTTTGTACCAGCCGT +
Preference number: 6 (lower is better)
Translates to: RAPHSCQGKRLS*WYASMSLCTSR
Trigger: ACGGCTGGTACAAAGGGACATCGATGCATACCAGCAAGATAGGCGTTTTCCCTGGCAACTATGTGGCGCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp TGCAGTGGAAGGGCTGACCATGGTCACCCCGCGACTTaGTTGACCCGCAGTAGACATAGAGACTTTAGCTTG +
Preference number: 6 (lower is better)
Translates to: CSGRADHGHPAT*LTRSRHRDFSL
Trigger: CAAGCTAAAGTCTCTATGTCTACTGCGGGTCAAGCAAGTCGCGGGGTGACCATGGTCAGCCCTTCCACTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp AGTGGAAGGGCTGACCATGGTCACCCCGCGACTTGCTaGACCCGCAGTAGACATAGAGACTTTAGCTTGGGA +
Preference number: 6 (lower is better)
Translates to: SGRADHGHPATC*TRSRHRDFSLG
Trigger: TCCCAAGCTAAAGTCTCTATGTCTACTGCGGGTCAAGCAAGTCGCGGGGTGACCATGGTCAGCCCTTCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp CCCACAATCCCCAGCAAACAGCGTTTGCAAAAGGTATaGTGGCAGGGTAAGACCTTTGCGGAAGCATCCAGG +
Preference number: 6 (lower is better)
Translates to: PTIPSKQRLQKV*WQGKTFAEASR
Trigger: CCTGGATGCTTCCGCAAAGGTCTTACCCTGCCAGCATACCTTTTGCAAACGCTGTTTGCTGGGGATTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp GCGCCACATAGTTGCCAGGGAAAACGCCTATCTTGCTaGTATGCATCGATGTCCCTTTGTACCAGCCGTCCT +
Preference number: 6 (lower is better)
Translates to: APHSCQGKRLSC*YASMSLCTSRP
Trigger: AGGACGGCTGGTACAAAGGGACATCGATGCATACCAGCAAGATAGGCGTTTTCCCTGGCAACTATGTGGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp AGCGTTTGCAAAAGGTATGCTGGCAGGGTAAGACCTTaGCGGAAGCATCCAGGCGTTCTAGACACACAGGGC +
Preference number: 6 (lower is better)
Translates to: SVCKRYAGRVRP*RKHPGVLDTQG
Trigger: GCCCTGTGTGTCTAGAACGCCTGGATGCTTCCGCAAAGGTCTTACCCTGCCAGCATACCTTTTGCAAACGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp ATCCACTCTGCGGATCACGGTCAGTACGTCGTCCTTTaGGAAGGGAAGGCAATCTTTGTCAGCTTCCTTGTC +
Preference number: 6 (lower is better)
Translates to: IHSADHGQYVVL*EGKAIFVSFLV
Trigger: GACAAGGAAGCTGACAAAGATTGCCTTCCCTTCGCAAAGGACGACGTACTGACCGTGATCCGCAGAGTGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp ACAATCCCCAGCAAACAGCGTTTGCAAAAGGTATGCTaGCAGGGTAAGACCTTTGCGGAAGCATCCAGGCGT +
Preference number: 6 (lower is better)
Translates to: TIPSKQRLQKVC*QGKTFAEASRR
Trigger: ACGCCTGGATGCTTCCGCAAAGGTCTTACCCTGCCAGCATACCTTTTGCAAACGCTGTTTGCTGGGGATTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp TCATTCCGGGAACCCACAATCCCCAGCAAACAGCGTTaGCAAAAGGTATGCTGGCAGGGTAAGACCTTTGCG +
Preference number: 6 (lower is better)
Translates to: SFREPTIPSKQR*QKVCWQGKTFA
Trigger: CGCAAAGGTCTTACCCTGCCAGCATACCTTTTGCAAACGCTGTTTGCTGGGGATTGTGGGTTCCCGGAATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp CATCCACTCTGCGGATCACGGTCAGTACGTCGTCCTTaGCGAAGGGAAGGCAATCTTTGTCAGCTTCCTTGT +
Preference number: 6 (lower is better)
Translates to: HPLCGSRSVRRP*RREGNLCQLPC
Trigger: ACAAGGAAGCTGACAAAGATTGCCTTCCCTTCGCAAAGGACGACGTACTGACCGTGATCCGCAGAGTGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 90 bp CATCTGAGTTCATTCCGGGAACCCACAATCCCCAGCAAACAGCGTTaGCAAAAGGTATGCTGGCAGGGTAAGACCTTTGCGGAAGCATCC +
Preference number: 6 (lower is better)
Translates to: HLSSFREPTIPSKQR*QKVCWQGKTFAEAS
Trigger: GGATGCTTCCGCAAAGGTCTTACCCTGCCAGCATACCTTTTGCAAACGCTGTTTGCTGGGGATTGTGGGTTCCCGGAATGAACTCAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 90 bp TTGCCAGGGAAAACGCCTATCTTGCTGGTATGCATCGATGTCCCTTaGTACCAGCCGTCCTGGCAACGCTCAAACACCAAAAACATCTCC +
Preference number: 6 (lower is better)
Translates to: LPGKTPILLVCIDVP*YQPSWQRSNTKNIS
Trigger: GGAGATGTTTTTGGTGTTTGAGCGTTGCCAGGACGGCTGGTACAAAGGGACATCGATGCATACCAGCAAGATAGGCGTTTTCCCTGGCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp CTGGTATGCATCGATGTCCCTTTGTACCAGCCGTCCTaGCAACGCTCAAACACCAAAAACATCTCCCCTTTC +
Preference number: 6 (lower is better)
Translates to: LVCIDVPLYQPS*QRSNTKNISPF
Trigger: GAAAGGGGAGATGTTTTTGGTGTTTGAGCGTTGCCAGGACGGCTGGTACAAAGGGACATCGATGCATACCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS GCA 72 bp ACTCCTGGCACGGGAGGCTTATCCCACTCTATCAGCTaGTTGGCAGCTGAGTTAAACTCCACGTATGAAATT +
Preference number: 6 (lower is better)
Translates to: TPGTGGLSHSIS*LAAELNSTYEI
Trigger: AATTTCATACGTGGAGTTTAACTCAGCTGCCAAGCAGCTGATAGAGTGGGATAAGCCTCCCGTGCCAGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CCA 72 bp CTCCGGGCTCTTTTCCTTCGTAGTTATATAATGCTTTaGCACACGGTAACTGAGGTATTCCCCTCACTGGGG +
Preference number: 6 (lower is better)
Translates to: LRALFLRSYIML*HTVTEVFPSLG
Trigger: CCCCAGTGAGGGGAATACCTCAGTTACCGTGTGCCAAAGCATTATATAACTACGAAGGAAAAGAGCCCGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS CAA 72 bp AAAACGCCTATCTTGCTGGTATGCATCGATGTCCCTTaGTACCAGCCGTCCTGGCAACGCTCAAACACCAAA +
Preference number: 6 (lower is better)
Translates to: KTPILLVCIDVP*YQPSWQRSNTK
Trigger: TTTGGTGTTTGAGCGTTGCCAGGACGGCTGGTACAAAGGGACATCGATGCATACCAGCAAGATAGGCGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2
CDS TCA 72 bp TACGGATATATAGCAACATATACACTGGGACGAGTCTaGGGCCGTAAATGTGCAATCTGTTCAGAGGACCCC +
Preference number: 6 (lower is better)
Translates to: YGYIATYTLGRV*GRKCAICSEDP
Trigger: GGGGTCCTCTGAACAGATTGCACATTTACGGCCTCAGACTCGTCCCAGTGTATATGTTGCTATATATCCGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034060.7
ENSMUST00000209611.2