RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SH3GLB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037062

Ensembl transcript IDs: ENSMUST00000163279.6, ENSMUST00000198254.5, ENSMUST00000199350.5, ENSMUST00000199531.5, ENSMUST00000199854.5, ENSMUST00000200532.2

Found 210 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGGAAGCACACAGGGAAGCAGAGGGCGTGAAGCAGATCTGGCTGTaGGCCGAGCTCCCCTCCACAGCTCTTCACTCTGGCTTGTGCCAC +
Preference number: 1 (lower is better)
Translates to: REAHREAEGVKQIWL*AELPSTALHSGLCH
Trigger: GTGGCACAAGCCAGAGTGAAGAGCTGTGGAGGGGAGCTCGGCTCACAGCCAGATCTGCTTCACGCCCTCTGCTTCCCTGTGTGCTTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR GCA 90 bp CTGTCGGCCCTGCGGTGGTTCTTACAACTGACTACCGCAGGGCCATaGAAATGGCTTCCTGGACAACTGTGGGGCCCTGCTTCCAGAATT +
Preference number: 1 (lower is better)
Translates to: LSALRWFLQLTTAGP*KWLPGQLWGPASRI
Trigger: AATTCTGGAAGCAGGGCCCCACAGTTGTCCAGGAAGCCATTTGCATGGCCCTGCGGTAGTCAGTTGTAAGAACCACCGCAGGGCCGACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR CCA 90 bp TCGTTGGTGCCTGAGGGTGAATGGCCACTTCTGTCGGCCCTGCGGTaGTTCTTACAACTGACTACCGCAGGGCCATGCAAATGGCTTCCT +
Preference number: 1 (lower is better)
Translates to: SLVPEGEWPLLSALR*FLQLTTAGPCKWLP
Trigger: AGGAAGCCATTTGCATGGCCCTGCGGTAGTCAGTTGTAAGAACCACCGCAGGGCCGACAGAAGTGGCCATTCACCCTCAGGCACCAACGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR TCA 90 bp CCCTCTCTCCTCCCCGCTGCCACTTCTCCTCAGAACCATCCTTCCTaGCTAACACTAGCTTCCTTTCGCTCCTGCTTGAAGGATGGGCTG +
Preference number: 1 (lower is better)
Translates to: PSLLPAATSPQNHPS*LTLASFRSCLKDGL
Trigger: CAGCCCATCCTTCAAGCAGGAGCGAAAGGAAGCTAGTGTTAGTCAGGAAGGATGGTTCTGAGGAGAAGTGGCAGCGGGGAGGAGAGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR GCA 90 bp AGGTGCTGGGACTGTGTGACAAAGCAGTCCTCTGTGAGAGCTCTCTaGATAAACAAGTCTGTGCCACCCTCTCTCCTCCCCGCTGCCACT +
Preference number: 1 (lower is better)
Translates to: RCWDCVTKQSSVRAL*INKSVPPSLLPAAT
Trigger: AGTGGCAGCGGGGAGGAGAGAGGGTGGCACAGACTTGTTTATGCAGAGAGCTCTCACAGAGGACTGCTTTGTCACACAGTCCCAGCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR GCA 90 bp TTCCTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATaGTGGCTTAGGCCTTATTTTCCTGCTATGAAGGATGGGCTGTGG +
Preference number: 1 (lower is better)
Translates to: FLSLLLEGWAVATWG*WLRPYFPAMKDGLW
Trigger: CCACAGCCCATCCTTCATAGCAGGAAAATAAGGCCTAAGCCAGCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR GCA 90 bp GCTAACAGAGGCAAGGGGAAATGTTCAAGTGTTGTCAATCGTTGGTaGCTGAGGGTGAATGGCCACTTCTGTCGGCCCTGCGGTGGTTCT +
Preference number: 1 (lower is better)
Translates to: ANRGKGKCSSVVNRW*LRVNGHFCRPCGGS
Trigger: AGAACCACCGCAGGGCCGACAGAAGTGGCCATTCACCCTCAGGCACCAACGATTGACAACACTTGAACATTTCCCCTTGCCTCTGTTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR CCA 90 bp CTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCTaGCTTAGGCCTTATTTTCCTGCTATGAAGGATGGGCTGTGGCAA +
Preference number: 1 (lower is better)
Translates to: LSLLLEGWAVATWGC*LRPYFPAMKDGLWQ
Trigger: TTGCCACAGCCCATCCTTCATAGCAGGAAAATAAGGCCTAAGCCAGCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR CCA 90 bp AAGGCTAACAGAGGCAAGGGGAAATGTTCAAGTGTTGTCAATCGTTaGTGCCTGAGGGTGAATGGCCACTTCTGTCGGCCCTGCGGTGGT +
Preference number: 1 (lower is better)
Translates to: KANRGKGKCSSVVNR*CLRVNGHFCRPCGG
Trigger: ACCACCGCAGGGCCGACAGAAGTGGCCATTCACCCTCAGGCACCAACGATTGACAACACTTGAACATTTCCCCTTGCCTCTGTTAGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR TCA 90 bp TTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTaGGGGTTTGTAAAGCCCATGCTGCTGTACTCCACCTCTGGATTT +
Preference number: 1 (lower is better)
Translates to: FAQRWPTRFYTHHLP*GFVKPMLLYSTSGF
Trigger: AAATCCAGAGGTGGAGTACAGCAGCATGGGCTTTACAAACCCTCAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR GCA 90 bp GGGATCAGAGAGTTTGGATTTCTAAGACATTCTCCAGTGGTGCACTaGTGGCCAGGGAGCTGTTTCAGAACTACCGCATGCTTCACACCA +
Preference number: 1 (lower is better)
Translates to: GIREFGFLRHSPVVH*WPGSCFRTTACFTP
Trigger: TGGTGTGAAGCATGCGGTAGTTCTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCAAACTCTCTGATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR CCA 90 bp ATCAGAGAGTTTGGATTTCTAAGACATTCTCCAGTGGTGCACTGCTaGCCAGGGAGCTGTTTCAGAACTACCGCATGCTTCACACCAGGG +
Preference number: 1 (lower is better)
Translates to: IREFGFLRHSPVVHC*PGSCFRTTACFTPG
Trigger: CCCTGGTGTGAAGCATGCGGTAGTTCTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCAAACTCTCTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR TCA 90 bp AGGGTTTGTAAAGCCCATGCTGCTGTACTCCACCTCTGGATTTCCTaGTTCTGCGGGGATCAGAGAGTTTGGATTTCTAAGACATTCTCC +
Preference number: 1 (lower is better)
Translates to: RVCKAHAAVLHLWIS*FCGDQRVWISKTFS
Trigger: GGAGAATGTCTTAGAAATCCAAACTCTCTGATCCCCGCAGAATCAGGAAATCCAGAGGTGGAGTACAGCAGCATGGGCTTTACAAACCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR TCA 90 bp AACTTCCTTTCTGAGGAAGAAAAAGAACAACAAACCTCATTCACTTaGTTCCCTAGAACACTAGCATCTCAGTTGTCTCTGGAGTCCCTC +
Preference number: 1 (lower is better)
Translates to: NFLSEEEKEQQTSFT*FPRTLASQLSLESL
Trigger: GAGGGACTCCAGAGACAACTGAGATGCTAGTGTTCTAGGGAATCAAGTGAATGAGGTTTGTTGTTCTTTTTCTTCCTCAGAAAGGAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR TCA 90 bp TCAGAAATCTTAACCTCAAACTTTTGGCTGTCAAATTGGCAGTTATaGAAGGGACATAAGAAATTTCCCTGTGAATGGTCCATTTCAGTA +
Preference number: 1 (lower is better)
Translates to: SEILTSNFWLSNWQL*KGHKKFPCEWSISV
Trigger: TACTGAAATGGACCATTCACAGGGAAATTTCTTATGTCCCTTTCATAACTGCCAATTTGACAGCCAAAAGTTTGAGGTTAAGATTTCTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR GCA 90 bp ATGAACTTTGTTAGGAAGGTTCATGGGGTACAGTTAGTCCTGTTATaGACGTATAATGAGATTTCTTTAGAACATACCATGCCATTATGT +
Preference number: 1 (lower is better)
Translates to: MNFVRKVHGVQLVLL*TYNEISLEHTMPLC
Trigger: ACATAATGGCATGGTATGTTCTAAAGAAATCTCATTATACGTGCATAACAGGACTAACTGTACCCCATGAACCTTCCTAACAAAGTTCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR-3UTR TCA 90 bp AGCTTCCTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCTGGGGAGTGTGGGCGGGGTaGGGAGGCTCTGCTCGGGTT +
Preference number: 2 (lower is better)
Translates to: SFLSLLLEGWAVATWGCWGVWAG*GGSARV
Trigger: AACCCGAGCAGAGCCTCCTCACCCCGCCCACACTCC...CCAGCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAGGAAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp ACTAGCTTCCTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCCCGGGAGGTGGAGAATaGGCTGAAGGGGGCAAGCAC +
Preference number: 2 (lower is better)
Translates to: TSFLSLLLEGWAVATWGCPGGGE*AEGGKH
Trigger: GTGCTTGCCCCCTTCAGCCCATTCTCCACCTCCCGG...GCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAGGAAGCTAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp AGCTTCCTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCTGGAACCAGCACTCCTGCTaGAAGCACCGGGTCCTGCTA +
Preference number: 2 (lower is better)
Translates to: SFLSLLLEGWAVATWGCWNQHSC*KHRVLL
Trigger: TAGCAGGACCCGGTGCTTCCAGCAGGAGTGCTGGTT...CCAGCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAGGAAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR TCA 90 bp GCAACCTGGGGATGCTGGCTTAGGCCTTATTTTCCTGCTATGAAGGATGGGCTGAGGTGGAGAATGGGCTaGAGGGGGCAAGCACAGCAC +
Preference number: 2 (lower is better)
Translates to: ATWGCWLRPYFPAMKDGLRWRMG*RGQAQH
Trigger: GTGCTGTGCTTGCCCCCTTCAGCCCATTCTCCACCT...CAGCCCATCCTTCATAGCAGGAAAATAAGGCCTAAGCCAGCATCCCCAGGTTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp AGCTACCTCTCCAGCACCATGTCTACCTGTGTGCTGCCATGCTTAGCCAGAACACCAGTGGTGCACTGCTaGCCAGGGAGCTGTTTCAGA +
Preference number: 2 (lower is better)
Translates to: SYLSSTMSTCVLPCLARTPVVHC*PGSCFR
Trigger: TCTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGG...TGTTCTGGCTAAGCATGGCAGCACACAGGTAGACATGGTGCTGGAGAGGTAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR-3UTR CCA 90 bp AATGGCTTCCTGGACAACTGTGGGGCCCTGCTTCCAGAATTTGGCTCAGTAGGTATGAAGGATGGGCTGTaGCAACCTGGGGATGCTGGC +
Preference number: 2 (lower is better)
Translates to: NGFLDNCGALLPEFGSVGMKDGL*QPGDAG
Trigger: GCCAGCATCCCCAGGTTGCCACAGCCCATCCTTCAT...ACCTACTGAGCCAAATTCTGGAAGCAGGGCCCCACAGTTGTCCAGGAAGCCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR CAA 90 bp CCCCTCCACAGCTCTTCACTCTGGCTTGTGCCACTAGGCAGTTCATaGCAAAGTTTCAGGTGCTGGGACTGTGTGACAAAGCAGTCCTCT +
Preference number: 2 (lower is better)
Translates to: PLHSSSLWLVPLGSS*QSFRCWDCVTKQSS
Trigger: AGAGGACTGCTTTGTCACACAGTCCCAGCACCTGAAACTTTGCAATGAACTGCCTAGTGGCACAAGCCAGAGTGAAGAGCTGTGGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR TCA 90 bp GAAATGTTCAAGTGTTGTCAATCGTTGGTGCCTGAGGGTGAATGGCCACTTCTGGGGAAGCAGAGGGCGTaGAGCAGATCTGGCTGTGAG +
Preference number: 2 (lower is better)
Translates to: EMFKCCQSLVPEGEWPLLGKQRA*SRSGCE
Trigger: CTCACAGCCAGATCTGCTTCACGCCCTCTGCTTCCC...CAGAAGTGGCCATTCACCCTCAGGCACCAACGATTGACAACACTTGAACATTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR GCA 90 bp AATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGAGGGTTTCAGAACTACCGCATaGTTCACACCAGGGAGGCCG +
Preference number: 2 (lower is better)
Translates to: NLHNGGPPGSTHIIFPEGFRTTA*FTPGRP
Trigger: CGGCCTCCCTGGTGTGAAGCATGCGGTAGTTCTGAA...ACCCTCAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR CAA 90 bp ACAGGAATTAGGAGGCATGGCCTTGTTGGAGTAGGTGTGGCCTTGTaGGAGGAAGTTTGTTACTGGGGCTGGGCTTTGGGGATTCAGATG +
Preference number: 2 (lower is better)
Translates to: TGIRRHGLVGVGVAL*EEVCYWGWALGIQM
Trigger: CATCTGAATCCCCAAAGCCCAGCCCCAGTAACAAACTTCCTCCAACAAGGCCACACCTACTCCAACAAGGCCATGCCTCCTAATTCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR CAA 90 bp GTAACAGGAATTAGGAGGCATGGCCTTGTTGGAGTAGGTGTGGCCTaGTTGGAGGAAGTTTGTTACTGGGGCTGGGCTTTGGGGATTCAG +
Preference number: 2 (lower is better)
Translates to: VTGIRRHGLVGVGVA*LEEVCYWGWALGIQ
Trigger: CTGAATCCCCAAAGCCCAGCCCCAGTAACAAACTTCCTCCAACAAGGCCACACCTACTCCAACAAGGCCATGCCTCCTAATTCCTGTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR-3UTR TCA 90 bp CTGGGCTTTGGGGATTCAGATGCTCAAGCCAGGCCCAGTGTTTCTTTTCCTACTCACCTCTGGATTTCCTaGTTCTGCGGGGATCAGAGA +
Preference number: 2 (lower is better)
Translates to: LGFGDSDAQARPSVSFPTHLWIS*FCGDQR
Trigger: TCTCTGATCCCCGCAGAATCAGGAAATCCAGAGGTG...AGTAGGAAAAGAAACACTGGGCCTGGCTTGAGCATCTGAATCCCCAAAGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR-3UTR TCA 90 bp CCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTAAGCGCATCTTCAGTGCTCTAAATCTGAGTTaGACTCCAGGGAGCCCAATA +
Preference number: 2 (lower is better)
Translates to: PLSTTAWVGPLVSKRIFSALNLS*TPGSPI
Trigger: TATTGGGCTCCCTGGAGTTCAACTCAGATTTAGAGC...ACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp CTCTGTGAGAGCTCTCTGCATAAACAAGTCTGTGCCACCCTCTCTCCTCCCCGCACTGAAAAGGACATCTaGGCTTACAGCATATGTACT +
Preference number: 2 (lower is better)
Translates to: LCESSLHKQVCATLSPPRTEKDI*AYSICT
Trigger: AGTACATATGCTGTAAGCCCAGATGTCCTTTTCAGT...GCGGGGAGGAGAGAGGGTGGCACAGACTTGTTTATGCAGAGAGCTCTCACAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR GCA 90 bp TACCTCTCCAGCACCATGTCTACCTGTGTGCTGCCATGCTTAGCCAGAACAAAATTCCTTCACAAGAGCTaGCTTGGTCATGGTGCATCT +
Preference number: 2 (lower is better)
Translates to: YLSSTMSTCVLPCLARTKFLHKS*LGHGAS
Trigger: AGATGCACCATGACCAAGGCAGCTCTTGTGAAGGAA...TTTTGTTCTGGCTAAGCATGGCAGCACACAGGTAGACATGGTGCTGGAGAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR CAA 90 bp GATTACGTTGGATCGATAATAGACAAAGGTACAAGGAAAGCGCCTTaGCTCCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTA +
Preference number: 2 (lower is better)
Translates to: DYVGSIIDKGTRKAP*LLLALQPGWVLLCL
Trigger: TAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGGAGCAAAGGCGCTTTCCTTGTACCTTTGTCTATTATCGATCCAACGTAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR GCA 90 bp CTCTGTGAGAGCTCTCTGCATAAACAAGTCTGTGCCACCCTCTCTCCTCCCCGCTTGTCCCCAGTGTTCTaGAATCTTAACAAAATTATG +
Preference number: 2 (lower is better)
Translates to: LCESSLHKQVCATLSPPRLSPVF*NLNKIM
Trigger: CATAATTTTGTTAAGATTGCAGAACACTGGGGACAA...GCGGGGAGGAGAGAGGGTGGCACAGACTTGTTTATGCAGAGAGCTCTCACAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp CCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTAAGCGCATCTTCAGTGTTTTATTGGCAGAATaGCCAGTTTCTGATGGCTTA +
Preference number: 2 (lower is better)
Translates to: PLSTTAWVGPLVSKRIFSVLLAE*PVSDGL
Trigger: TAAGCCATCAGAAACTGGCCATTCTGCCAATAAAAC...ACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp CCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTAAGCGCATCTTCAGTACTGAAAAGGACATCTaGGCTTACAGCATATGTACT +
Preference number: 2 (lower is better)
Translates to: PLSTTAWVGPLVSKRIFSTEKDI*AYSICT
Trigger: AGTACATATGCTGTAAGCCCAGATGTCCTTTTCAGT...ACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR TCA 90 bp CCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTAAGCGCATCTTCAGTCAATGGATGCAATTCTaGTTGGTCATCAAATTTTGG +
Preference number: 2 (lower is better)
Translates to: PLSTTAWVGPLVSKRIFSQWMQF*LVIKFW
Trigger: CCAAAATTTGATGACCAATCAGAATTGCATCCATTG...ACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR TCA 90 bp GAAATGTTCAAGTGTTGTCAATCGTTGGTGCCTGAGGGTGAATGGCCACTTCTGCATAGTTTTATGATGTaGCAGGGAGGGAAGCACACA +
Preference number: 2 (lower is better)
Translates to: EMFKCCQSLVPEGEWPLLHSFMM*QGGKHT
Trigger: TGTGTGCTTCCCTCCCTGTCACATCATAAAACTATG...CAGAAGTGGCCATTCACCCTCAGGCACCAACGATTGACAACACTTGAACATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR GCA 90 bp AATGGCTTCCTGGACAACTGTGGGGCCCTGCTTCCAGAATTTGGCTCAGTAGGTTATATGCCAGGTCTTTaGCTAAAAGCACAAAACACA +
Preference number: 2 (lower is better)
Translates to: NGFLDNCGALLPEFGSVGYMPGL*LKAQNT
Trigger: TGTGTTTTGTGCTTTTAGGCAAAGACCTGGCATATA...ACCTACTGAGCCAAATTCTGGAAGCAGGGCCCCACAGTTGTCCAGGAAGCCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR GCA 90 bp TTATTTTCCTTGTTCCATCGGAGTGAGGTACATTCTCATTTTAGGAACCTCATCAGTAACCAGCACTCCTaGTGGAAGCACCGGGTCCTG +
Preference number: 2 (lower is better)
Translates to: LFSLFHRSEVHSHFRNLISNQHS*WKHRVL
Trigger: CAGGACCCGGTGCTTCCAGCAGGAGTGCTGGTTACT...GATGAGGTTCCTAAAATGAGAATGTACCTCACTCCGATGGAACAAGGAAAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp CCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTAAGCGCATCTTCAGTGATCAACAAAGTACCTaGCCCTCAATAAATGTCTTT +
Preference number: 2 (lower is better)
Translates to: PLSTTAWVGPLVSKRIFSDQQST*PSINVF
Trigger: AAAGACATTTATTGAGGGCCAGGTACTTTGTTGATC...ACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR GCA 90 bp CCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTAAGCGCATCTTCAGTTTGTCCCCAGTGTTCTaGAATCTTAACAAAATTATG +
Preference number: 2 (lower is better)
Translates to: PLSTTAWVGPLVSKRIFSLSPVF*NLNKIM
Trigger: CATAATTTTGTTAAGATTGCAGAACACTGGGGACAA...ACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR GCA 90 bp CCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTAAGCGCATCTTCAGTTATCTTCTCAATGGATaGAATTCTGATTGGTCATCA +
Preference number: 2 (lower is better)
Translates to: PLSTTAWVGPLVSKRIFSYLLNG*NSDWSS
Trigger: TGATGACCAATCAGAATTGCATCCATTGAGAAGATA...ACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp GCAACCTGGGGATGCTGGCTTAGGCCTTATTTTCCTGCTATGAAGGATGGGCTGGCTACTAAGGTACTCTaGACAATTTTATGTTCTGTT +
Preference number: 2 (lower is better)
Translates to: ATWGCWLRPYFPAMKDGLATKVL*TILCSV
Trigger: AACAGAACATAAAATTGTCCAGAGTACCTTAGTAGC...CAGCCCATCCTTCATAGCAGGAAAATAAGGCCTAAGCCAGCATCCCCAGGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR TCA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAAAACCAAAGATCCTGCTaGAGACAGACTGCATCCACT +
Preference number: 2 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKNQRSC*RQTAST
Trigger: AGTGGATGCAGTCTGTCTTCAGCAGGATCTTTGGTT...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAAATCCACTGCATGACTTaGCCTATAATGAAGGCTGTC +
Preference number: 2 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKIHCMT*PIMKAV
Trigger: GACAGCCTTCATTATAGGCCAAGTCATGCAGTGGAT...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAAACCATGCAGTTTTATTaGCAGAATGGCCAGTTTCTG +
Preference number: 2 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKTMQFY*QNGQFL
Trigger: CAGAAACTGGCCATTCTGCCAATAAAACTGCATGGT...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR TCA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCGTGGGATTCTACTTCTaGCTTCTCAGACCCAAACCA +
Preference number: 2 (lower is better)
Translates to: QISIVPQNLILDKYNRWRVGFYF*LLRPKP
Trigger: TGGTTTGGGTCTGAGAAGTCAGAAGTAGAATCCCAC...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR TCA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAACTGAATTTGCTGAACTaGAGCTGCTGTTTAAAGTCA +
Preference number: 2 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKLNLLN*SCCLKS
Trigger: TGACTTTAAACAGCAGCTTCAGTTCAGCAAATTCAG...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR TCA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAACAATGGATGCAATTCTaGTTGGTCATCAAATTTTGG +
Preference number: 2 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKQWMQF*LVIKFW
Trigger: CCAAAATTTGATGACCAATCAGAATTGCATCCATTG...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR TCA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCGCAGAGGAATTTATCTaGCTGCAGAGAAAGGGGTTT +
Preference number: 2 (lower is better)
Translates to: QISIVPQNLILDKYNRWRAEEFI*LQRKGF
Trigger: AAACCCCTTTCTCTGCAGTCAGATAAATTCCTCTGC...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGATCCACTGCATGACTTaGCCTATAATGAAGGCTGTC +
Preference number: 2 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKIHCMT*PIMKAV
Trigger: GACAGCCTTCATTATAGGCCAAGTCATGCAGTGGAT...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp AGTATCTTCTCAATGGATGCAATTCTGATTGGTCATCAAATTTTGGCAACTGAAACCATGCAGTTTTATTaGCAGAATGGCCAGTTTCTG +
Preference number: 2 (lower is better)
Translates to: SIFSMDAILIGHQILATETMQFY*QNGQFL
Trigger: CAGAAACTGGCCATTCTGCCAATAAAACTGCATGGT...TTCAGTTGCCAAAATTTGATGACCAATCAGAATTGCATCCATTGAGAAGATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAAGCTACTAAGGTACTCTaGACAATTTTATGTTCTGTT +
Preference number: 2 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKATKVL*TILCSV
Trigger: AACAGAACATAAAATTGTCCAGAGTACCTTAGTAGC...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR GCA 90 bp TTATTTTCCTTGTTCCATCGGAGTGAGGTACATTCTCATTTTAGGAACCTCATCCTCAAAAGTAGAAGTTaGTTGTTAGTAAAACCTCAG +
Preference number: 2 (lower is better)
Translates to: LFSLFHRSEVHSHFRNLILKSRS*LLVKPQ
Trigger: CTGAGGTTTTACTAACAAGCAACTTCTACTTTTGAG...GATGAGGTTCCTAAAATGAGAATGTACCTCACTCCGATGGAACAAGGAAAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp AGTATCTTCTCAATGGATGCAATTCTGATTGGTCATCAAATTTTGGCAACTGAAGTTTTATTGGCAGAATaGCCAGTTTCTGATGGCTTA +
Preference number: 2 (lower is better)
Translates to: SIFSMDAILIGHQILATEVLLAE*PVSDGL
Trigger: TAAGCCATCAGAAACTGGCCATTCTGCCAATAAAAC...TTCAGTTGCCAAAATTTGATGACCAATCAGAATTGCATCCATTGAGAAGATACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGGGATGCAATTCTGATTaGTCATCAAATTTTGGCAAC +
Preference number: 2 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKGCNSD*SSNFGN
Trigger: GTTGCCAAAATTTGATGACCAATCAGAATTGCATCC...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCAAAGAATTCCTCAACTaGCAATTCACAGCAACGTTT +
Preference number: 2 (lower is better)
Translates to: QISIVPQNLILDKYNRWRKEFLN*QFTATF
Trigger: AAACGTTGCTGTGAATTGCCAGTTGAGGAATTCTTT...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CCA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCGATCAACAAAGTACCTaGCCCTCAATAAATGTCTTT +
Preference number: 2 (lower is better)
Translates to: QISIVPQNLILDKYNRWRDQQST*PSINVF
Trigger: AAAGACATTTATTGAGGGCCAGGTACTTTGTTGATC...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR GCA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGCTCAAAAGTAGAAGTTaGTTGTTAGTAAAACCTCAG +
Preference number: 2 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKLKSRS*LLVKPQ
Trigger: CTGAGGTTTTACTAACAAGCAACTTCTACTTTTGAG...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR TCA 72 bp CACAGGGAAGCAGAGGGCGTGAAGCAGATCTGGCTGTaGGCCGAGCTCCCCTCCACAGCTCTTCACTCTGGC +
Preference number: 3 (lower is better)
Translates to: HREAEGVKQIWL*AELPSTALHSG
Trigger: GCCAGAGTGAAGAGCTGTGGAGGGGAGCTCGGCTCACAGCCAGATCTGCTTCACGCCCTCTGCTTCCCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR GCA 72 bp CACTGCTGGCCAGGGAGCTGTTTCAGAACTACCGCATaGTTCACACCAGGGAGGCCGGGCCGTCAGTCTGCA +
Preference number: 3 (lower is better)
Translates to: HCWPGSCFRTTA*FTPGRPGRQSA
Trigger: TGCAGACTGACGGCCCGGCCTCCCTGGTGTGAAGCATGCGGTAGTTCTGAAACAGCTCCCTGGCCAGCAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR TCA 72 bp GGCCACTTCTGTCGGCCCTGCGGTGGTTCTTACAACTaGCTACCGCAGGGCCATGCAAATGGCTTCCTGGAC +
Preference number: 3 (lower is better)
Translates to: GHFCRPCGGSYN*LPQGHANGFLD
Trigger: GTCCAGGAAGCCATTTGCATGGCCCTGCGGTAGTCAGTTGTAAGAACCACCGCAGGGCCGACAGAAGTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR GCA 72 bp CTGCGGTGGTTCTTACAACTGACTACCGCAGGGCCATaGAAATGGCTTCCTGGACAACTGTGGGGCCCTGCT +
Preference number: 3 (lower is better)
Translates to: LRWFLQLTTAGP*KWLPGQLWGPA
Trigger: AGCAGGGCCCCACAGTTGTCCAGGAAGCCATTTGCATGGCCCTGCGGTAGTCAGTTGTAAGAACCACCGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR TCA 72 bp CGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTaGGGGTTTGTAAAGCCCATGCTGCTGTACTCCACC +
Preference number: 3 (lower is better)
Translates to: RWPTRFYTHHLP*GFVKPMLLYST
Trigger: GGTGGAGTACAGCAGCATGGGCTTTACAAACCCTCAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR GCA 72 bp GGCAAGGGGAAATGTTCAAGTGTTGTCAATCGTTGGTaGCTGAGGGTGAATGGCCACTTCTGTCGGCCCTGC +
Preference number: 3 (lower is better)
Translates to: GKGKCSSVVNRW*LRVNGHFCRPC
Trigger: GCAGGGCCGACAGAAGTGGCCATTCACCCTCAGGCACCAACGATTGACAACACTTGAACATTTCCCCTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR CCA 72 bp ACCGCAGGGCCATGCAAATGGCTTCCTGGACAACTGTaGGGCCCTGCTTCCAGAATTTGGCTCAGTAGGTTT +
Preference number: 3 (lower is better)
Translates to: TAGPCKWLPGQL*GPASRIWLSRF
Trigger: AAACCTACTGAGCCAAATTCTGGAAGCAGGGCCCCACAGTTGTCCAGGAAGCCATTTGCATGGCCCTGCGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR CCA 72 bp ACAACTGACTACCGCAGGGCCATGCAAATGGCTTCCTaGACAACTGTGGGGCCCTGCTTCCAGAATTTGGCT +
Preference number: 3 (lower is better)
Translates to: TTDYRRAMQMAS*TTVGPCFQNLA
Trigger: AGCCAAATTCTGGAAGCAGGGCCCCACAGTTGTCCAGGAAGCCATTTGCATGGCCCTGCGGTAGTCAGTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR TCA 72 bp CTCCCCGCTGCCACTTCTCCTCAGAACCATCCTTCCTaGCTAACACTAGCTTCCTTTCGCTCCTGCTTGAAG +
Preference number: 3 (lower is better)
Translates to: LPAATSPQNHPS*LTLASFRSCLK
Trigger: CTTCAAGCAGGAGCGAAAGGAAGCTAGTGTTAGTCAGGAAGGATGGTTCTGAGGAGAAGTGGCAGCGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR GCA 72 bp CTTGTGTCTAAGCGCATCTTCAGTAACCAGCACTCCTaGTGGAAGCACCGGGTCCTGCTACAGAGCTTACAC +
Preference number: 3 (lower is better)
Translates to: LVSKRIFSNQHS*WKHRVLLQSLH
Trigger: GTGTAAGCTCTGTAGCAGGACCCGGTGCTTCCAGCAGGAGTGCTGGTTACTGAAGATGCGCTTAGACACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR GCA 72 bp GACTGTGTGACAAAGCAGTCCTCTGTGAGAGCTCTCTaGATAAACAAGTCTGTGCCACCCTCTCTCCTCCCC +
Preference number: 3 (lower is better)
Translates to: DCVTKQSSVRAL*INKSVPPSLLP
Trigger: GGGGAGGAGAGAGGGTGGCACAGACTTGTTTATGCAGAGAGCTCTCACAGAGGACTGCTTTGTCACACAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR CCA 72 bp GTGTCTAAGCGCATCTTCAGTAACCAGCACTCCTGCTaGAAGCACCGGGTCCTGCTACAGAGCTTACACAGA +
Preference number: 3 (lower is better)
Translates to: VSKRIFSNQHSC*KHRVLLQSLHR
Trigger: TCTGTGTAAGCTCTGTAGCAGGACCCGGTGCTTCCAGCAGGAGTGCTGGTTACTGAAGATGCGCTTAGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR CCA 72 bp CCTTGTTGGAGGAAGTTTGTTACTGGGGCTGGGCTTTaGGGATTCAGATGCTCAAGCCAGGCCCAGTGTTTC +
Preference number: 3 (lower is better)
Translates to: PCWRKFVTGAGL*GFRCSSQAQCF
Trigger: GAAACACTGGGCCTGGCTTGAGCATCTGAATCCCCAAAGCCCAGCCCCAGTAACAAACTTCCTCCAACAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR CCA 72 bp GGAGTAGGTGTGGCCTTGTTGGAGGAAGTTTGTTACTaGGGCTGGGCTTTGGGGATTCAGATGCTCAAGCCA +
Preference number: 3 (lower is better)
Translates to: GVGVALLEEVCY*GWALGIQMLKP
Trigger: TGGCTTGAGCATCTGAATCCCCAAAGCCCAGCCCCAGTAACAAACTTCCTCCAACAAGGCCACACCTACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR CCA 72 bp CTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCTaGCTTAGGCCTTATTTTCCTGCTATGAAGGATGGG +
Preference number: 3 (lower is better)
Translates to: LLEGWAVATWGC*LRPYFPAMKDG
Trigger: CCCATCCTTCATAGCAGGAAAATAAGGCCTAAGCCAGCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR CCA 72 bp AGAGGCAAGGGGAAATGTTCAAGTGTTGTCAATCGTTaGTGCCTGAGGGTGAATGGCCACTTCTGTCGGCCC +
Preference number: 3 (lower is better)
Translates to: RGKGKCSSVVNR*CLRVNGHFCRP
Trigger: GGGCCGACAGAAGTGGCCATTCACCCTCAGGCACCAACGATTGACAACACTTGAACATTTCCCCTTGCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR GCA 72 bp TCCTGCTATGAAGGATGGGCTGTGGCAACCTGGGGATaGTGGCTTAGGCCTTATTTTCCTTGTTCCATCGGA +
Preference number: 3 (lower is better)
Translates to: SCYEGWAVATWG*WLRPYFPCSIG
Trigger: TCCGATGGAACAAGGAAAATAAGGCCTAAGCCAGCATCCCCAGGTTGCCACAGCCCATCCTTCATAGCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR CCA 72 bp TGCTATGAAGGATGGGCTGTGGCAACCTGGGGATGCTaGCTTAGGCCTTATTTTCCTTGTTCCATCGGAGTG +
Preference number: 3 (lower is better)
Translates to: CYEGWAVATWGC*LRPYFPCSIGV
Trigger: CACTCCGATGGAACAAGGAAAATAAGGCCTAAGCCAGCATCCCCAGGTTGCCACAGCCCATCCTTCATAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR TCA 72 bp CGTGTGAACTTTCCCTTACGTCATAGTTTTATGATGTaGCAGGGAGGGAAGCACACAGGGAAGCAGAGGGCG +
Preference number: 3 (lower is better)
Translates to: RVNFPLRHSFMM*QGGKHTGKQRA
Trigger: CGCCCTCTGCTTCCCTGTGTGCTTCCCTCCCTGTCACATCATAAAACTATGACGTAAGGGAAAGTTCACACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR GCA 72 bp GCTCAAGCCAGGCCCAGTGTTTCTTTTCCTACTGCCTaGCAATCTCGATGTAGAATTCTCAGCTACCTCTCC +
Preference number: 3 (lower is better)
Translates to: AQARPSVSFPTA*QSRCRILSYLS
Trigger: GGAGAGGTAGCTGAGAATTCTACATCGAGATTGGCAGGCAGTAGGAAAAGAAACACTGGGCCTGGCTTGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR CCA 72 bp TTTGGATTTCTAAGACATTCTCCAGTGGTGCACTGCTaGCCAGGGAGCTGTTTCAGAACTACCGCATGCTTC +
Preference number: 3 (lower is better)
Translates to: FGFLRHSPVVHC*PGSCFRTTACF
Trigger: GAAGCATGCGGTAGTTCTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR-3UTR CAA 90 bp CCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTAAGCGCATCTTCAGTAACCATGCAGTTTTATaGGCAGAATGGCCAGTTTCT +
Preference number: 3 (lower is better)
Translates to: PLSTTAWVGPLVSKRIFSNHAVL*AEWPVS
Trigger: AGAAACTGGCCATTCTGCCAATAAAACTGCATGGTT...ACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CAA 90 bp ACTAGCTTCCTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCCAATTTTATGTTCTGTaGGTTCTAGGCCCAAAACAA +
Preference number: 3 (lower is better)
Translates to: TSFLSLLLEGWAVATWGCQFYVL*VLGPKQ
Trigger: TTGTTTTGGGCCTAGAACCAACAGAACATAAAATTG...GCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAGGAAGCTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR CAA 90 bp AATGGCTTCCTGGACAACTGTGGGGCCCTGCTTCCAGAATTTGGCTCAGTAGGTCTATATGCCAGGTCTTaGCCTAAAAGCACAAAACAC +
Preference number: 3 (lower is better)
Translates to: NGFLDNCGALLPEFGSVGLYARS*PKSTKH
Trigger: GTGTTTTGTGCTTTTAGGCAAAGACCTGGCATATAG...ACCTACTGAGCCAAATTCTGGAAGCAGGGCCCCACAGTTGTCCAGGAAGCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR-3UTR CAA 90 bp TTCCTACTGCCTGCCAATCTCGATGTAGAATTCTCAGCTACCTCTCCAGCACCAGTGAATTCTTTTAATTaGCACAACGGTGGCCCACCA +
Preference number: 3 (lower is better)
Translates to: FLLPANLDVEFSATSPAPVNSFN*HNGGPP
Trigger: TGGTGGGCCACCGTTGTGCAAATTAAAAGAATTCAC...TGGTGCTGGAGAGGTAGCTGAGAATTCTACATCGAGATTGGCAGGCAGTAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR TCA 72 bp GTCAGACATGTTCCTCACTGCCCATGTGTCAGGGACTaGAAAGGACATCTGGGCTTACAGCATATGTACTAT +
Preference number: 3 (lower is better)
Translates to: VRHVPHCPCVRD*KGHLGLQHMYY
Trigger: ATAGTACATATGCTGTAAGCCCAGATGTCCTTTTCAGTCCCTGACACATGGGCAGTGAGGAACATGTCTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR CCA 72 bp ATCCTGCTGAAGACAGACTGCATCCACTGCATGACTTaGCCTATAATGAAGGCTGTCGCACCAATCTGTATT +
Preference number: 3 (lower is better)
Translates to: ILLKTDCIHCMT*PIMKAVAPICI
Trigger: AATACAGATTGGTGCGACAGCCTTCATTATAGGCCAAGTCATGCAGTGGATGCAGTCTGTCTTCAGCAGGAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR CCA 72 bp CTCACTGCCCATGTGTCAGGGACTGAAAAGGACATCTaGGCTTACAGCATATGTACTATATGCCAGGTCTTT +
Preference number: 3 (lower is better)
Translates to: LTAHVSGTEKDI*AYSICTICQVF
Trigger: AAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTTCAGTCCCTGACACATGGGCAGTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR CCA 72 bp TTGGTTCTAGGCCCAAAACAAGTCTTTCCTTCTACGTaGGATTCTACTTCTGACTTCTCAGACCCAAACCAG +
Preference number: 3 (lower is better)
Translates to: LVLGPKQVFPST*DSTSDFSDPNQ
Trigger: CTGGTTTGGGTCTGAGAAGTCAGAAGTAGAATCCCACGTAGAAGGAAAGACTTGTTTTGGGCCTAGAACCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR TCA 72 bp TTAACCTCAAACTTTTGGCTGTCAAATTGGCAGTTATaGAAGGGACATAAGAAATTTCCCTGTGAATGGTCC +
Preference number: 3 (lower is better)
Translates to: LTSNFWLSNWQL*KGHKKFPCEWS
Trigger: GGACCATTCACAGGGAAATTTCTTATGTCCCTTTCATAACTGCCAATTTGACAGCCAAAAGTTTGAGGTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR GCA 72 bp GTTAGGAAGGTTCATGGGGTACAGTTAGTCCTGTTATaGACGTATAATGAGATTTCTTTAGAACATACCATG +
Preference number: 3 (lower is better)
Translates to: VRKVHGVQLVLL*TYNEISLEHTM
Trigger: CATGGTATGTTCTAAAGAAATCTCATTATACGTGCATAACAGGACTAACTGTACCCCATGAACCTTCCTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR-3UTR CAA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCAACCATGCAGTTTTATaGGCAGAATGGCCAGTTTCT +
Preference number: 3 (lower is better)
Translates to: QISIVPQNLILDKYNRWRNHAVL*AEWPVS
Trigger: AGAAACTGGCCATTCTGCCAATAAAACTGCATGGTT...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR TCA 72 bp CCACGAATTAATGGGTTTTCTAAGAGTTTTCTTCTATaGTACACAATTTCCTTGGGCCTTTACGTGAGCAAA +
Preference number: 3 (lower is better)
Translates to: PRINGFSKSFLL*YTISLGLYVSK
Trigger: TTTGCTCACGTAAAGGCCCAAGGAAATTGTGTATCATAGAAGAAAACTCTTAGAAAACCCATTAATTCGTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR-3UTR CAA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCCAATTTTATGTTCTGTaGGTTCTAGGCCCAAAACAA +
Preference number: 3 (lower is better)
Translates to: QISIVPQNLILDKYNRWRQFYVL*VLGPKQ
Trigger: TTGTTTTGGGCCTAGAACCAACAGAACATAAAATTG...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR TCA 72 bp TACTGTAGTGTAGTATCTTCTCAATGGATGCAATTCTaGTTGGTCATCAAATTTTGGCAACTGAATAATCTG +
Preference number: 3 (lower is better)
Translates to: YCSVVSSQWMQF*LVIKFWQLNNL
Trigger: CAGATTATTCAGTTGCCAAAATTTGATGACCAATCAGAATTGCATCCATTGAGAAGATACTACACTACAGTA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp AATGGCTTCCTGGACAACTGTGGGGCCCTGCTTCCAGAATTTGGCTCAGTAGGTGGGCGTGTGTACTGCTaGTTCCCTCAAGCAGGAGTC +
Preference number: 4 (lower is better)
Translates to: NGFLDNCGALLPEFGSVGGRVYC*FPQAGV
Trigger: GACTCCTGCTTGAGGGAATCAGCAGTACACACGCCC...ACCTACTGAGCCAAATTCTGGAAGCAGGGCCCCACAGTTGTCCAGGAAGCCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp TGGATTTCTAAGACATTCTCCAGTGGTGCACTGCTGGCCAGGGAGCTGTTTCAGGGGCGTGTGTACTGCTaGTTCCCTCAAGCAGGAGTC +
Preference number: 4 (lower is better)
Translates to: WISKTFSSGALLARELFQGRVYC*FPQAGV
Trigger: GACTCCTGCTTGAGGGAATCAGCAGTACACACGCCC...CTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR CAA 72 bp GCCTTGTTGGAGGAAGTTTGTTACTGGGGCTGGGCTTaGGGGATTCAGATGCTCAAGCCAGGCCCAGTGTTT +
Preference number: 4 (lower is better)
Translates to: ALLEEVCYWGWA*GIQMLKPGPVF
Trigger: AAACACTGGGCCTGGCTTGAGCATCTGAATCCCCAAAGCCCAGCCCCAGTAACAAACTTCCTCCAACAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR CAA 72 bp CAGAGGCAAGGGGAAATGTTCAAGTGTTGTCAATCGTaGGTGCCTGAGGGTGAATGGCCACTTCTGTCGGCC +
Preference number: 4 (lower is better)
Translates to: QRQGEMFKCCQS*VPEGEWPLLSA
Trigger: GGCCGACAGAAGTGGCCATTCACCCTCAGGCACCAACGATTGACAACACTTGAACATTTCCCCTTGCCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp TCATCTTCCCTGAGGGTTTGTAAAGCCCATGCTGCTGTACTCCACCTCTGGATTGGGCGTGTGTACTGCTaGTTCCCTCAAGCAGGAGTC +
Preference number: 4 (lower is better)
Translates to: SSSLRVCKAHAAVLHLWIGRVYC*FPQAGV
Trigger: GACTCCTGCTTGAGGGAATCAGCAGTACACACGCCC...AATCCAGAGGTGGAGTACAGCAGCATGGGCTTTACAAACCCTCAGGGAAGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp ACTAGCTTCCTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCCAGTTCTGTCTTCTCTaGCTGGCCAAGCTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: TSFLSLLLEGWAVATWGCQFCLL*LAKLFF
Trigger: GAAGAAAAGCTTGGCCAGGCAGAGAAGACAGAACTG...GCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAGGAAGCTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
3UTR CAA 72 bp TTGCTCCTCTTAGCACTACAGCCTGGGTGGGTCCTCTaGTGTCTAAGCGCATCTTCAGTAACCAGCACTCCT +
Preference number: 4 (lower is better)
Translates to: LLLLALQPGWVL*CLSASSVTSTP
Trigger: AGGAGTGCTGGTTACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGGAGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp CTCTGTGAGAGCTCTCTGCATAAACAAGTCTGTGCCACCCTCTCTCCTCCCCGCAGGACCAATTGCATTTaGCAAAGCATATGGCACTGG +
Preference number: 4 (lower is better)
Translates to: LCESSLHKQVCATLSPPRRTNCI*QSIWHW
Trigger: CCAGTGCCATATGCTTTGTCAAATGCAATTGGTCCT...GCGGGGAGGAGAGAGGGTGGCACAGACTTGTTTATGCAGAGAGCTCTCACAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp ATTCTCCAGTGGTGCACTGCTGGCCAGGGAGCTGTTTCAGAACTACCGCATGCTGAGTCGGGTAATCTCTaGCTGACGATCAAATTCACT +
Preference number: 4 (lower is better)
Translates to: ILQWCTAGQGAVSELPHAESGNL*LTIKFT
Trigger: AGTGAATTTGATCGTCAGGCAGAGATTACCCGACTC...AGCATGCGGTAGTTCTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR CAA 72 bp GGATCGATAATAGACAAAGGTACAAGGAAAGCGCCTTaGCTCCTCTTAGCACTACAGCCTGGGTGGGTCCTC +
Preference number: 4 (lower is better)
Translates to: GSIIDKGTRKAP*LLLALQPGWVL
Trigger: GAGGACCCACCCAGGCTGTAGTGCTAAGAGGAGCAAAGGCGCTTTCCTTGTACCTTTGTCTATTATCGATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp TTTAATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGAGAGGAGGTTTTCCAGGTaGGCGTCCAGTTCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: FNLHNGGPPGSTHIIFPERRFSR*ASSSVF
Trigger: GAAGACAGAACTGGACGCTCACCTGGAAAACCTCCT...CTCAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR TCA 90 bp CCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTAAGCGCATCTTCAGTTTTAAGGCTGATGTTTaGATCAGCTCTCGGTCAGCT +
Preference number: 4 (lower is better)
Translates to: PLSTTAWVGPLVSKRIFSFKADV*ISSRSA
Trigger: AGCTGACCGAGAGCTGATTCAAACATCAGCCTTAAA...ACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp ACTAGCTTCCTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCAACAGCACTTCGGTCTaGTTCATTATCTTTTCTGTC +
Preference number: 4 (lower is better)
Translates to: TSFLSLLLEGWAVATWGCNSTSV*FIIFSV
Trigger: GACAGAAAAGATAATGAAGCAGACCGAAGTGCTGTT...GCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAGGAAGCTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp ATTCTCCAGTGGTGCACTGCTGGCCAGGGAGCTGTTTCAGAACTACCGCATGCTGGAAAACTTCCCAGTTaGTTCTGTAGGTCTAGCATA +
Preference number: 4 (lower is better)
Translates to: ILQWCTAGQGAVSELPHAGKLPS*FCRSSI
Trigger: TATGCTAGACCTACAGAAGCAACTGGGAAGTTTTCC...AGCATGCGGTAGTTCTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CCA 90 bp TTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGAGGGTTTGTTCTATCCTGGCATTTaGATTTGGCTGCAACAGCAC +
Preference number: 4 (lower is better)
Translates to: LHNGGPPGSTHIIFPEGLFYPGI*IWLQQH
Trigger: GTGCTGTTGCAGCCAAATCCAAATGCCAGGATAGAA...CAAACCCTCAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR CCA 90 bp ACTAGCTTCCTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCCAAATTCTTCTATCCTaGCATTTGGATTTGGCTGCA +
Preference number: 4 (lower is better)
Translates to: TSFLSLLLEGWAVATWGCQILLS*HLDLAA
Trigger: TGCAGCCAAATCCAAATGCCAGGATAGAAGAATTTG...GCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAGGAAGCTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR CCA 90 bp TTTAATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGAGCTACCCGTTGAAGCCTaGGCAGAAGGACCAATTGCA +
Preference number: 4 (lower is better)
Translates to: FNLHNGGPPGSTHIIFPELPVEA*AEGPIA
Trigger: TGCAATTGGTCCTTCTGCCCAGGCTTCAACGGGTAG...CTCAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CCA 90 bp CTTTTAATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGCTACCCGTTGAAGCCTaGGCAGAAGGACCAATTGCA +
Preference number: 4 (lower is better)
Translates to: LLICTTVAHQVLHTSSSLLPVEA*AEGPIA
Trigger: TGCAATTGGTCCTTCTGCCCAGGCTTCAACGGGTAG...CAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATTAAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
3UTR CAA 72 bp AGCTCTTCACTCTGGCTTGTGCCACTAGGCAGTTCATaGCAAAGTTTCAGGTGCTGGGACTGTGTGACAAAG +
Preference number: 4 (lower is better)
Translates to: SSSLWLVPLGSS*QSFRCWDCVTK
Trigger: CTTTGTCACACAGTCCCAGCACCTGAAACTTTGCAATGAACTGCCTAGTGGCACAAGCCAGAGTGAAGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp TGGATTTCTAAGACATTCTCCAGTGGTGCACTGCTGGCCAGGGAGCTGTTTCAGAGGACCAATTGCATTTaGCAAAGCATATGGCACTGG +
Preference number: 4 (lower is better)
Translates to: WISKTFSSGALLARELFQRTNCI*QSIWHW
Trigger: CCAGTGCCATATGCTTTGTCAAATGCAATTGGTCCT...CTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR TCA 90 bp AATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGAGGGTAGGACCAATTGCATTTaGCAAAGCATATGGCACTGG +
Preference number: 4 (lower is better)
Translates to: NLHNGGPPGSTHIIFPEGRTNCI*QSIWHW
Trigger: CCAGTGCCATATGCTTTGTCAAATGCAATTGGTCCT...ACCCTCAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp AGCTACCTCTCCAGCACCATGTCTACCTGTGTGCTGCCATGCTTAGCCAGAACAGGAAAACTTCCCAGTTaGTTCTGTAGGTCTAGCATA +
Preference number: 4 (lower is better)
Translates to: SYLSSTMSTCVLPCLARTGKLPS*FCRSSI
Trigger: TATGCTAGACCTACAGAAGCAACTGGGAAGTTTTCC...TGTTCTGGCTAAGCATGGCAGCACACAGGTAGACATGGTGCTGGAGAGGTAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR TCA 90 bp CAAACCCAACCCAAACCAAGCAAAACTCCAAAGCCAAGAGACCCTAGTAAGGCCTTTAAGGCTGATGTTTaGATCAGCTCTCGGTCAGCT +
Preference number: 4 (lower is better)
Translates to: QTQPKPSKTPKPRDPSKAFKADV*ISSRSA
Trigger: AGCTGACCGAGAGCTGATTCAAACATCAGCCTTAAA...GGCCTTACTAGGGTCTCTTGGCTTTGGAGTTTTGCTTGGTTTGGGTTGGGTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAAGGGCGTGTGTACTGCTaGTTCCCTCAAGCAGGAGTC +
Preference number: 4 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKGRVYC*FPQAGV
Trigger: GACTCCTGCTTGAGGGAATCAGCAGTACACACGCCC...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp CAAACCCAACCCAAACCAAGCAAAACTCCAAAGCCAAGAGACCCTAGTAAGGCCAGGACCAATTGCATTTaGCAAAGCATATGGCACTGG +
Preference number: 4 (lower is better)
Translates to: QTQPKPSKTPKPRDPSKARTNCI*QSIWHW
Trigger: CCAGTGCCATATGCTTTGTCAAATGCAATTGGTCCT...GGCCTTACTAGGGTCTCTTGGCTTTGGAGTTTTGCTTGGTTTGGGTTGGGTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp GCAACCTGGGGATGCTGGCTTAGGCCTTATTTTCCTGCTATGAAGGATGGGCTGGTTTATACGACTTGGTaGTTTTCTATCCAGTTTCTC +
Preference number: 4 (lower is better)
Translates to: ATWGCWLRPYFPAMKDGLVYTTW*FSIQFL
Trigger: GAGAAACTGGATAGAAAAGCACCAAGTCGTATAAAC...CAGCCCATCCTTCATAGCAGGAAAATAAGGCCTAAGCCAGCATCCCCAGGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp CAAACCCAACCCAAACCAAGCAAAACTCCAAAGCCAAGAGACCCTAGTAAGGCCATACTGGTAACACTGTaGATAGTAAGTCATCTGGGC +
Preference number: 4 (lower is better)
Translates to: QTQPKPSKTPKPRDPSKAILVTL*IVSHLG
Trigger: GCCCAGATGACTTACTATGCACAGTGTTACCAGTAT...GGCCTTACTAGGGTCTCTTGGCTTTGGAGTTTTGCTTGGTTTGGGTTGGGTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp TTCCTACTGCCTGCCAATCTCGATGTAGAATTCTCAGCTACCTCTCCAGCACCAATACTGGTAACACTGTaGATAGTAAGTCATCTGGGC +
Preference number: 4 (lower is better)
Translates to: FLLPANLDVEFSATSPAPILVTL*IVSHLG
Trigger: GCCCAGATGACTTACTATGCACAGTGTTACCAGTAT...TGGTGCTGGAGAGGTAGCTGAGAATTCTACATCGAGATTGGCAGGCAGTAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp TTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGAGGGTTTGCAGTTCAGTGCTATTTaGAGCATCATAATCATAGAG +
Preference number: 4 (lower is better)
Translates to: LHNGGPPGSTHIIFPEGLQFSAI*SIIIIE
Trigger: CTCTATGATTATGATGCTGCAAATAGCACTGAACTG...CAAACCCTCAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CCA 90 bp GACATTCTCCAGTGGTGCACTGCTGGCCAGGGAGCTGTTTCAGAACTACCGCATAGAAAGATAATTGGATaGAAAACTTCCCAGTTGCTT +
Preference number: 4 (lower is better)
Translates to: DILQWCTAGQGAVSELPHRKIIG*KTSQLL
Trigger: AAGCAACTGGGAAGTTTTCCATCCAATTATCTTTCT...ATGCGGTAGTTCTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp CAAACCCAACCCAAACCAAGCAAAACTCCAAAGCCAAGAGACCCTAGTAAGGCCAACAGCACTTCGGTCTaGTTCATTATCTTTTCTGTC +
Preference number: 4 (lower is better)
Translates to: QTQPKPSKTPKPRDPSKANSTSV*FIIFSV
Trigger: GACAGAAAAGATAATGAAGCAGACCGAAGTGCTGTT...GGCCTTACTAGGGTCTCTTGGCTTTGGAGTTTTGCTTGGTTTGGGTTGGGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp CTTTTAATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGATACTGGTAACACTGTaGATAGTAAGTCATCTGGGC +
Preference number: 4 (lower is better)
Translates to: LLICTTVAHQVLHTSSSLILVTL*IVSHLG
Trigger: GCCCAGATGACTTACTATGCACAGTGTTACCAGTAT...CAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATTAAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CCA 90 bp AATGGCTTCCTGGACAACTGTGGGGCCCTGCTTCCAGAATTTGGCTCAGTAGGTGTTGTTTATACGACTTaGTGCTTTTCTATCCAGTTT +
Preference number: 4 (lower is better)
Translates to: NGFLDNCGALLPEFGSVGVVYTT*CFSIQF
Trigger: AAACTGGATAGAAAAGCACCAAGTCGTATAAACAAC...ACCTACTGAGCCAAATTCTGGAAGCAGGGCCCCACAGTTGTCCAGGAAGCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp TATTTTCCTTGTTCCATCGGAGTGAGGTACATTCTCATTTTAGGAACCTCATCTAGGAGGTTTTCCAGGTaGGCGTCCAGTTCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: YFPCSIGVRYILILGTSSRRFSR*ASSSVF
Trigger: GAAGACAGAACTGGACGCTCACCTGGAAAACCTCCT...AGATGAGGTTCCTAAAATGAGAATGTACCTCACTCCGATGGAACAAGGAAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp TCTGGATTTCCTGATTCTGCGGGGATCAGAGAGTTTGGATTTCTAAGACATTCTCAGTTCTGTCTTCTCTaGCTGGCCAAGCTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: SGFPDSAGIREFGFLRHSQFCLL*LAKLFF
Trigger: GAAGAAAAGCTTGGCCAGGCAGAGAAGACAGAACTG...AGAATGTCTTAGAAATCCAAACTCTCTGATCCCCGCAGAATCAGGAAATCCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp GGCCCAAAACAAGTCTTTCCTTCTACGTGGGATTCTACTTCTGACTTCTCAGACATACTGGTAACACTGTaGATAGTAAGTCATCTGGGC +
Preference number: 4 (lower is better)
Translates to: GPKQVFPSTWDSTSDFSDILVTL*IVSHLG
Trigger: GCCCAGATGACTTACTATGCACAGTGTTACCAGTAT...GTCTGAGAAGTCAGAAGTAGAATCCCACGTAGAAGGAAAGACTTGTTTTGGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp TTCCTACTGCCTGCCAATCTCGATGTAGAATTCTCAGCTACCTCTCCAGCACCACAGTTCAGTGCTATTTaGAGCATCATAATCATAGAG +
Preference number: 4 (lower is better)
Translates to: FLLPANLDVEFSATSPAPQFSAI*SIIIIE
Trigger: CTCTATGATTATGATGCTGCAAATAGCACTGAACTG...TGGTGCTGGAGAGGTAGCTGAGAATTCTACATCGAGATTGGCAGGCAGTAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp CAAACCCAACCCAAACCAAGCAAAACTCCAAAGCCAAGAGACCCTAGTAAGGCCTTTTGTCACTTCCTCTaGCCAAATCATAATGTTATC +
Preference number: 4 (lower is better)
Translates to: QTQPKPSKTPKPRDPSKAFCHFL*PNHNVI
Trigger: GATAACATTATGATTTGGGCAGAGGAAGTGACAAAA...GGCCTTACTAGGGTCTCTTGGCTTTGGAGTTTTGCTTGGTTTGGGTTGGGTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGAGGAGGTTTTCCAGGTaGGCGTCCAGTTCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKRRFSR*ASSSVF
Trigger: GAAGACAGAACTGGACGCTCACCTGGAAAACCTCCT...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp AGAGCTGCCTTGGTCATGGTGCATCTTCACAGCAATAGAACACTAAGATCATCTCAATTCCTGTTCAGATaGACTTTTAGTTTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: RAALVMVHLHSNRTLRSSQFLFR*TFSFCS
Trigger: GCTGCAGAAACTAAAAGTTCATCTGAACAGGAATTG...AGATGATCTTAGTGTTCTATTGCTGTGAAGATGCACCATGACCAAGGCAGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp GGCCCAAAACAAGTCTTTCCTTCTACGTGGGATTCTACTTCTGACTTCTCAGACGTTTATACGACTTGGTaGTTTTCTATCCAGTTTCTC +
Preference number: 4 (lower is better)
Translates to: GPKQVFPSTWDSTSDFSDVYTTW*FSIQFL
Trigger: GAGAAACTGGATAGAAAAGCACCAAGTCGTATAAAC...GTCTGAGAAGTCAGAAGTAGAATCCCACGTAGAAGGAAAGACTTGTTTTGGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp GGATTTCCTGATTCTGCGGGGATCAGAGAGTTTGGATTTCTAAGACATTCTCCAGCCAAACTCAGTTCCTaGATCAATCATATATTGTCC +
Preference number: 4 (lower is better)
Translates to: GFPDSAGIREFGFLRHSPAKLSS*INHILS
Trigger: GGACAATATATGATTGATGCAGGAACTGAGTTTGGC...TGGAGAATGTCTTAGAAATCCAAACTCTCTGATCCCCGCAGAATCAGGAAATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp ATTCTTTTAATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCGGAGTGACAGTTCAGTaGTATTTGCAGCATCATAAT +
Preference number: 4 (lower is better)
Translates to: ILLICTTVAHQVLHTSSSGVTVQ*YLQHHN
Trigger: ATTATGATGCTGCAAATAGCACTGAACTGTCACTCC...GGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATTAAAAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CCA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAATTCTATCCTGGCATTTaGATTTGGCTGCAACAGCAC +
Preference number: 4 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKFYPGI*IWLQQH
Trigger: GTGCTGTTGCAGCCAAATCCAAATGCCAGGATAGAA...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CCA 90 bp CTTTTAATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGAGAAAGATAATTGGATaGAAAACTTCCCAGTTGCTT +
Preference number: 4 (lower is better)
Translates to: LLICTTVAHQVLHTSSSLRKIIG*KTSQLL
Trigger: AAGCAACTGGGAAGTTTTCCATCCAATTATCTTTCT...CAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATTAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CCA 90 bp AGTATCTTCTCAATGGATGCAATTCTGATTGGTCATCAAATTTTGGCAACTGAACTACCCGTTGAAGCCTaGGCAGAAGGACCAATTGCA +
Preference number: 4 (lower is better)
Translates to: SIFSMDAILIGHQILATELPVEA*AEGPIA
Trigger: TGCAATTGGTCCTTCTGCCCAGGCTTCAACGGGTAG...TTCAGTTGCCAAAATTTGATGACCAATCAGAATTGCATCCATTGAGAAGATACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CCA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGCTACCCGTTGAAGCCTaGGCAGAAGGACCAATTGCA +
Preference number: 4 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKLPVEA*AEGPIA
Trigger: TGCAATTGGTCCTTCTGCCCAGGCTTCAACGGGTAG...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CCA 90 bp GGCCCAAAACAAGTCTTTCCTTCTACGTGGGATTCTACTTCTGACTTCTCAGACAGAAAGATAATTGGATaGAAAACTTCCCAGTTGCTT +
Preference number: 4 (lower is better)
Translates to: GPKQVFPSTWDSTSDFSDRKIIG*KTSQLL
Trigger: AAGCAACTGGGAAGTTTTCCATCCAATTATCTTTCT...GTCTGAGAAGTCAGAAGTAGAATCCCACGTAGAAGGAAAGACTTGTTTTGGGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCCAGTTCTGTCTTCTCTaGCTGGCCAAGCTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: QISIVPQNLILDKYNRWRQFCLL*LAKLFF
Trigger: GAAGAAAAGCTTGGCCAGGCAGAGAAGACAGAACTG...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp ATATCCAAACACCCTGTGTTGAAGGTAAATTCATTTAGTTTTCCAGGGTTCCATGAGTCGGGTAATCTCTaGCTGACGATCAAATTCACT +
Preference number: 4 (lower is better)
Translates to: ISKHPVLKVNSFSFPGFHESGNL*LTIKFT
Trigger: AGTGAATTTGATCGTCAGGCAGAGATTACCCGACTC...ATGGAACCCTGGAAAACTAAATGAATTTACCTTCAACACAGGGTGTTTGGATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp TTATTTTCCTTGTTCCATCGGAGTGAGGTACATTCTCATTTTAGGAACCTCATCGGAAAACTTCCCAGTTaGTTCTGTAGGTCTAGCATA +
Preference number: 4 (lower is better)
Translates to: LFSLFHRSEVHSHFRNLIGKLPS*FCRSSI
Trigger: TATGCTAGACCTACAGAAGCAACTGGGAAGTTTTCC...GATGAGGTTCCTAAAATGAGAATGTACCTCACTCCGATGGAACAAGGAAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR CCA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAACAAATTCTTCTATCCTaGCATTTGGATTTGGCTGCA +
Preference number: 4 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKQILLS*HLDLAA
Trigger: TGCAGCCAAATCCAAATGCCAGGATAGAAGAATTTG...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp TATTTTCCTTGTTCCATCGGAGTGAGGTACATTCTCATTTTAGGAACCTCATCTGCCAAACTCAGTTCCTaGATCAATCATATATTGTCC +
Preference number: 4 (lower is better)
Translates to: YFPCSIGVRYILILGTSSAKLSS*INHILS
Trigger: GGACAATATATGATTGATGCAGGAACTGAGTTTGGC...AGATGAGGTTCCTAAAATGAGAATGTACCTCACTCCGATGGAACAAGGAAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp AGTATCTTCTCAATGGATGCAATTCTGATTGGTCATCAAATTTTGGCAACTGAAGAGTCGGGTAATCTCTaGCTGACGATCAAATTCACT +
Preference number: 4 (lower is better)
Translates to: SIFSMDAILIGHQILATEESGNL*LTIKFT
Trigger: AGTGAATTTGATCGTCAGGCAGAGATTACCCGACTC...TTCAGTTGCCAAAATTTGATGACCAATCAGAATTGCATCCATTGAGAAGATACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CCA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGTTCTATCCTGGCATTTaGATTTGGCTGCAACAGCAC +
Preference number: 4 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKFYPGI*IWLQQH
Trigger: GTGCTGTTGCAGCCAAATCCAAATGCCAGGATAGAA...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CCA 90 bp TCTGGATTTCCTGATTCTGCGGGGATCAGAGAGTTTGGATTTCTAAGACATTCTGTTGTTTATACGACTTaGTGCTTTTCTATCCAGTTT +
Preference number: 4 (lower is better)
Translates to: SGFPDSAGIREFGFLRHSVVYTT*CFSIQF
Trigger: AAACTGGATAGAAAAGCACCAAGTCGTATAAACAAC...AGAATGTCTTAGAAATCCAAACTCTCTGATCCCCGCAGAATCAGGAAATCCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
3UTR CAA 72 bp TCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTaGCCTAAAAGCACAAAACACAAAGTAATACTTGTG +
Preference number: 4 (lower is better)
Translates to: SGLTAYVLYARS*PKSTKHKVILV
Trigger: CACAAGTATTACTTTGTGTTTTGTGCTTTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
3UTR CAA 72 bp CCTGCATGTAACTCGTTTATATCCAAACACCCTGTGTaGAAGGTAAATTCATTTAGTTTTCCAGGGTTCCAT +
Preference number: 4 (lower is better)
Translates to: PACNSFISKHPV*KVNSFSFPGFH
Trigger: ATGGAACCCTGGAAAACTAAATGAATTTACCTTCAACACAGGGTGTTTGGATATAAACGAGTTACATGCAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp AGTATCTTCTCAATGGATGCAATTCTGATTGGTCATCAAATTTTGGCAACTGAAGGAAAACTTCCCAGTTaGTTCTGTAGGTCTAGCATA +
Preference number: 4 (lower is better)
Translates to: SIFSMDAILIGHQILATEGKLPS*FCRSSI
Trigger: TATGCTAGACCTACAGAAGCAACTGGGAAGTTTTCC...TTCAGTTGCCAAAATTTGATGACCAATCAGAATTGCATCCATTGAGAAGATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CCA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAAGTTGTTTATACGACTTaGTGCTTTTCTATCCAGTTT +
Preference number: 4 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKVVYTT*CFSIQF
Trigger: AAACTGGATAGAAAAGCACCAAGTCGTATAAACAAC...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR TCA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGCAATTCCTGTTCAGATaGACTTTTAGTTTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKQFLFR*TFSFCS
Trigger: GCTGCAGAAACTAAAAGTTCATCTGAACAGGAATTG...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163279.6
CDS-3UTR GCA 90 bp AGTATCTTCTCAATGGATGCAATTCTGATTGGTCATCAAATTTTGGCAACTGAAGCCAAACTCAGTTCCTaGATCAATCATATATTGTCC +
Preference number: 4 (lower is better)
Translates to: SIFSMDAILIGHQILATEAKLSS*INHILS
Trigger: GGACAATATATGATTGATGCAGGAACTGAGTTTGGC...TTCAGTTGCCAAAATTTGATGACCAATCAGAATTGCATCCATTGAGAAGATACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGGGAGTGACAGTTCAGTaGTATTTGCAGCATCATAAT +
Preference number: 4 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKGVTVQ*YLQHHN
Trigger: ATTATGATGCTGCAAATAGCACTGAACTGTCACTCC...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCGGAGTGACAGTTCAGTaGTATTTGCAGCATCATAAT +
Preference number: 4 (lower is better)
Translates to: QISIVPQNLILDKYNRWRGVTVQ*YLQHHN
Trigger: ATTATGATGCTGCAAATAGCACTGAACTGTCACTCC...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp ATATGCTCATCAGAAATCTTAACCTCAAACTTTTGGCTGTCAAATTGGCAGTTAGTTTATACGACTTGGTaGTTTTCTATCCAGTTTCTC +
Preference number: 4 (lower is better)
Translates to: ICSSEILTSNFWLSNWQLVYTTW*FSIQFL
Trigger: GAGAAACTGGATAGAAAAGCACCAAGTCGTATAAAC...TAACTGCCAATTTGACAGCCAAAAGTTTGAGGTTAAGATTTCTGATGAGCATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR GCA 90 bp AGTATCTTCTCAATGGATGCAATTCTGATTGGTCATCAAATTTTGGCAACTGAACAGTTCAGTGCTATTTaGAGCATCATAATCATAGAG +
Preference number: 4 (lower is better)
Translates to: SIFSMDAILIGHQILATEQFSAI*SIIIIE
Trigger: CTCTATGATTATGATGCTGCAAATAGCACTGAACTG...TTCAGTTGCCAAAATTTGATGACCAATCAGAATTGCATCCATTGAGAAGATACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR GCA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGCAGTTCAGTGCTATTTaGAGCATCATAATCATAGAG +
Preference number: 4 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKQFSAI*SIIIIE
Trigger: CTCTATGATTATGATGCTGCAAATAGCACTGAACTG...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CCA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGAGAAAGATAATTGGATaGAAAACTTCCCAGTTGCTT +
Preference number: 4 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKRKIIG*KTSQLL
Trigger: AAGCAACTGGGAAGTTTTCCATCCAATTATCTTTCT...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS GCA 90 bp TTTGCTAAGGAGGTTTTCCAGGTGAGCGTCCAGTTCTGTCTTCTCTaGCTGGCCAAGCTTTTCTTCTGTGAACTGCACGGCCCGGCTGAG +
Preference number: 5 (lower is better)
Translates to: FAKEVFQVSVQFCLL*LAKLFFCELHGPAE
Trigger: CTCAGCCGGGCCGTGCAGTTCACAGAAGAAAAGCTTGGCCAGGCAGAGAAGACAGAACTGGACGCTCACCTGGAAAACCTCCTTAGCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS-3UTR CAA 90 bp CTCTGTGAGAGCTCTCTGCATAAACAAGTCTGTGCCACCCTCTCTCCTCCCCGCCCCAAAAGTTCCGGGTaGTTTATACGACTTGGTGCT +
Preference number: 5 (lower is better)
Translates to: LCESSLHKQVCATLSPPRPKSSG*FIRLGA
Trigger: AGCACCAAGTCGTATAAACAACCCGGAACTTTTGGG...GCGGGGAGGAGAGAGGGTGGCACAGACTTGTTTATGCAGAGAGCTCTCACAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp AGCTTCCTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCTGGGATTCTTTAAGGTCATaGAGGTTAGAAGGACAGGTG +
Preference number: 5 (lower is better)
Translates to: SFLSLLLEGWAVATWGCWDSLRS*RLEGQV
Trigger: CACCTGTCCTTCTAACCTCAATGACCTTAAAGAATC...CCAGCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAGGAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp GACATTCTCCAGTGGTGCACTGCTGGCCAGGGAGCTGTTTCAGAACTACCGCATGATTCTTTAAGGTCATaGAGGTTAGAAGGACAGGTG +
Preference number: 5 (lower is better)
Translates to: DILQWCTAGQGAVSELPHDSLRS*RLEGQV
Trigger: CACCTGTCCTTCTAACCTCAATGACCTTAAAGAATC...ATGCGGTAGTTCTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp AGCTTCCTTTCGCTCCTGCTTGAAGGATGGGCTGTGGCAACCTGGGGATGCTGGACAGTTCAGTGCTATTaGCAGCATCATAATCATAGA +
Preference number: 5 (lower is better)
Translates to: SFLSLLLEGWAVATWGCWTVQCY*QHHNHR
Trigger: TCTATGATTATGATGCTGCAAATAGCACTGAACTGT...CCAGCATCCCCAGGTTGCCACAGCCCATCCTTCAAGCAGGAGCGAAAGGAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp AGCTACCTCTCCAGCACCATGTCTACCTGTGTGCTGCCATGCTTAGCCAGAACATGCATCAATCATATATaGTCCCAAAAGTTCCGGGTT +
Preference number: 5 (lower is better)
Translates to: SYLSSTMSTCVLPCLARTCINHI*SQKFRV
Trigger: AACCCGGAACTTTTGGGACAATATATGATTGATGCA...TGTTCTGGCTAAGCATGGCAGCACACAGGTAGACATGGTGCTGGAGAGGTAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp TGGATTTCTAAGACATTCTCCAGTGGTGCACTGCTGGCCAGGGAGCTGTTTCAGAAGGACCAATTGCATTaGACAAAGCATATGGCACTG +
Preference number: 5 (lower is better)
Translates to: WISKTFSSGALLARELFQKDQLH*TKHMAL
Trigger: CAGTGCCATATGCTTTGTCAAATGCAATTGGTCCTT...CTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp ATCAGAGAGTTTGGATTTCTAAGACATTCTCCAGTGGTGCACTGCTGGCCAGGGGGGCAGAAGGACCAATaGCATTTGACAAAGCATATG +
Preference number: 5 (lower is better)
Translates to: IREFGFLRHSPVVHCWPGGQKDQ*HLTKHM
Trigger: CATATGCTTTGTCAAATGCAATTGGTCCTTCTGCCC...CCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCAAACTCTCTGAT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp TTTGGATTTCTAAGACATTCTCCAGTGGTGCACTGCTGGCCAGGGAGCTGTTTCCTAGCCTTCCTGTTGTaGCTGGATTCTTTAAGGTCA +
Preference number: 5 (lower is better)
Translates to: FGFLRHSPVVHCWPGSCFLAFLL*LDSLRS
Trigger: TGACCTTAAAGAATCCAGCAACAACAGGAAGGCTAG...GAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp TTTAATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGAGGGGCAGAAGGACCAATaGCATTTGACAAAGCATATG +
Preference number: 5 (lower is better)
Translates to: FNLHNGGPPGSTHIIFPEGQKDQ*HLTKHM
Trigger: CATATGCTTTGTCAAATGCAATTGGTCCTTCTGCCC...CTCAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp ATCAGAGAGTTTGGATTTCTAAGACATTCTCCAGTGGTGCACTGCTGGCCAGGGGATTCTTTAAGGTCATaGAGGTTAGAAGGACAGGTG +
Preference number: 5 (lower is better)
Translates to: IREFGFLRHSPVVHCWPGDSLRS*RLEGQV
Trigger: CACCTGTCCTTCTAACCTCAATGACCTTAAAGAATC...CCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCAAACTCTCTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp GAAATGTTCAAGTGTTGTCAATCGTTGGTGCCTGAGGGTGAATGGCCACTTCTGCTAGCCTTCCTGTTGTaGCTGGATTCTTTAAGGTCA +
Preference number: 5 (lower is better)
Translates to: EMFKCCQSLVPEGEWPLLLAFLL*LDSLRS
Trigger: TGACCTTAAAGAATCCAGCAACAACAGGAAGGCTAG...CAGAAGTGGCCATTCACCCTCAGGCACCAACGATTGACAACACTTGAACATTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp CTTTTAATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCCTGCTAGCCTTCCTGTTGTaGCTGGATTCTTTAAGGTCA +
Preference number: 5 (lower is better)
Translates to: LLICTTVAHQVLHTSSSLLAFLL*LDSLRS
Trigger: TGACCTTAAAGAATCCAGCAACAACAGGAAGGCTAG...CAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATTAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp CCTCTTAGCACTACAGCCTGGGTGGGTCCTCTTGTGTCTAAGCGCATCTTCAGTACAGTTCAGTGCTATTaGCAGCATCATAATCATAGA +
Preference number: 5 (lower is better)
Translates to: PLSTTAWVGPLVSKRIFSTVQCY*QHHNHR
Trigger: TCTATGATTATGATGCTGCAAATAGCACTGAACTGT...ACTGAAGATGCGCTTAGACACAAGAGGACCCACCCAGGCTGTAGTGCTAAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp GAAATGTTCAAGTGTTGTCAATCGTTGGTGCCTGAGGGTGAATGGCCACTTCTGATTCCTGTTCAGATTTaGTCACTTCCTCTGCCCAAA +
Preference number: 5 (lower is better)
Translates to: EMFKCCQSLVPEGEWPLLIPVQI*SLPLPK
Trigger: TTTGGGCAGAGGAAGTGACAAAATCTGAACAGGAAT...CAGAAGTGGCCATTCACCCTCAGGCACCAACGATTGACAACACTTGAACATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp GAAATGTTCAAGTGTTGTCAATCGTTGGTGCCTGAGGGTGAATGGCCACTTCTGGGTTGTTTATACGACTaGGTGCTTTTCTATCCAGTT +
Preference number: 5 (lower is better)
Translates to: EMFKCCQSLVPEGEWPLLGCLYD*VLFYPV
Trigger: AACTGGATAGAAAAGCACCAAGTCGTATAAACAACC...CAGAAGTGGCCATTCACCCTCAGGCACCAACGATTGACAACACTTGAACATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp GGCCCAAAACAAGTCTTTCCTTCTACGTGGGATTCTACTTCTGACTTCTCAGACAAGGACCAATTGCATTaGACAAAGCATATGGCACTG +
Preference number: 5 (lower is better)
Translates to: GPKQVFPSTWDSTSDFSDKDQLH*TKHMAL
Trigger: CAGTGCCATATGCTTTGTCAAATGCAATTGGTCCTT...GTCTGAGAAGTCAGAAGTAGAATCCCACGTAGAAGGAAAGACTTGTTTTGGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp TTTGGATTTCTAAGACATTCTCCAGTGGTGCACTGCTGGCCAGGGAGCTGTTTCACAGTTCAGTGCTATTaGCAGCATCATAATCATAGA +
Preference number: 5 (lower is better)
Translates to: FGFLRHSPVVHCWPGSCFTVQCY*QHHNHR
Trigger: TCTATGATTATGATGCTGCAAATAGCACTGAACTGT...GAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp ATCAGAGAGTTTGGATTTCTAAGACATTCTCCAGTGGTGCACTGCTGGCCAGGGACAGTTCAGTGCTATTaGCAGCATCATAATCATAGA +
Preference number: 5 (lower is better)
Translates to: IREFGFLRHSPVVHCWPGTVQCY*QHHNHR
Trigger: TCTATGATTATGATGCTGCAAATAGCACTGAACTGT...CCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCAAACTCTCTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS GCA 90 bp AATAAGGGCATTTCCATAAGCTGTCCCTGGGCCAAACTCAGTTCCTaGATCAATCATATATTGTCCCAAAAGTTCCGGGTTGTTTATACG +
Preference number: 5 (lower is better)
Translates to: NKGISISCPWAKLSS*INHILSQKFRVVYT
Trigger: CGTATAAACAACCCGGAACTTTTGGGACAATATATGATTGATGCAGGAACTGAGTTTGGCCCAGGGACAGCTTATGGAAATGCCCTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS-3UTR CAA 90 bp ATTCTTTTAATTTGCACAACGGTGGCCCACCAGGTTCTACACACATCATCTTCCAAGGACCAATTGCATTaGACAAAGCATATGGCACTG +
Preference number: 5 (lower is better)
Translates to: ILLICTTVAHQVLHTSSSKDQLH*TKHMAL
Trigger: CAGTGCCATATGCTTTGTCAAATGCAATTGGTCCTT...GGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATTAAAAGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199350.5
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp GGATTTCCTGATTCTGCGGGGATCAGAGAGTTTGGATTTCTAAGACATTCTCCAGGTTGTTTATACGACTaGGTGCTTTTCTATCCAGTT +
Preference number: 5 (lower is better)
Translates to: GFPDSAGIREFGFLRHSPGCLYD*VLFYPV
Trigger: AACTGGATAGAAAAGCACCAAGTCGTATAAACAACC...TGGAGAATGTCTTAGAAATCCAAACTCTCTGATCCCCGCAGAATCAGGAAATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199531.5
CDS-3UTR CAA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCCCCAAAAGTTCCGGGTaGTTTATACGACTTGGTGCT +
Preference number: 5 (lower is better)
Translates to: QISIVPQNLILDKYNRWRPKSSG*FIRLGA
Trigger: AGCACCAAGTCGTATAAACAACCCGGAACTTTTGGG...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp AAAAGGACATCTGGGCTTACAGCATATGTACTATATGCCAGGTCTTTGCCTAAATGCATCAATCATATATaGTCCCAAAAGTTCCGGGTT +
Preference number: 5 (lower is better)
Translates to: KRTSGLTAYVLYARSLPKCINHI*SQKFRV
Trigger: AACCCGGAACTTTTGGGACAATATATGATTGATGCA...TTTAGGCAAAGACCTGGCATATAGTACATATGCTGTAAGCCCAGATGTCCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp TATTTTCCTTGTTCCATCGGAGTGAGGTACATTCTCATTTTAGGAACCTCATCTAAGGACCAATTGCATTaGACAAAGCATATGGCACTG +
Preference number: 5 (lower is better)
Translates to: YFPCSIGVRYILILGTSSKDQLH*TKHMAL
Trigger: CAGTGCCATATGCTTTGTCAAATGCAATTGGTCCTT...AGATGAGGTTCCTAAAATGAGAATGTACCTCACTCCGATGGAACAAGGAAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198254.5
CDS TCA 90 bp TCTATAAAGTTTCTTAAAGGAGTGAGGAAATTTAAGGCTGATGTTTaGATCAGCTCTCGGTCAGCTGTTCCAATTCGCTTCTGTGTTTCT +
Preference number: 5 (lower is better)
Translates to: SIKFLKGVRKFKADV*ISSRSAVPIRFCVS
Trigger: AGAAACACAGAAGCGAATTGGAACAGCTGACCGAGAGCTGATTCAAACATCAGCCTTAAATTTCCTCACTCCTTTAAGAAACTTTATAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS-3UTR CAA 90 bp AGTATCTTCTCAATGGATGCAATTCTGATTGGTCATCAAATTTTGGCAACTGAAGGGCAGAAGGACCAATaGCATTTGACAAAGCATATG +
Preference number: 5 (lower is better)
Translates to: SIFSMDAILIGHQILATEGQKDQ*HLTKHM
Trigger: CATATGCTTTGTCAAATGCAATTGGTCCTTCTGCCC...TTCAGTTGCCAAAATTTGATGACCAATCAGAATTGCATCCATTGAGAAGATACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGGGGCAGAAGGACCAATaGCATTTGACAAAGCATATG +
Preference number: 5 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKGQKDQ*HLTKHM
Trigger: CATATGCTTTGTCAAATGCAATTGGTCCTTCTGCCC...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCCTAGCCTTCCTGTTGTaGCTGGATTCTTTAAGGTCA +
Preference number: 5 (lower is better)
Translates to: QISIVPQNLILDKYNRWRLAFLL*LDSLRS
Trigger: TGACCTTAAAGAATCCAGCAACAACAGGAAGGCTAG...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCGATTCTTTAAGGTCATaGAGGTTAGAAGGACAGGTG +
Preference number: 5 (lower is better)
Translates to: QISIVPQNLILDKYNRWRDSLRS*RLEGQV
Trigger: CACCTGTCCTTCTAACCTCAATGACCTTAAAGAATC...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp CAAATTTCTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCGGTTGTTTATACGACTaGGTGCTTTTCTATCCAGTT +
Preference number: 5 (lower is better)
Translates to: QISIVPQNLILDKYNRWRGCLYD*VLFYPV
Trigger: AACTGGATAGAAAAGCACCAAGTCGTATAAACAACC...GCGCCATCTGTTATATTTGTCCAAAATTAGGTTTTGAGGGACTATAGAAATTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS-3UTR CAA 90 bp AGAACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAAAGTGCATCAATCATATATaGTCCCAAAAGTTCCGGGTT +
Preference number: 5 (lower is better)
Translates to: RTKFSMFTKLLTQMDALKCINHI*SQKFRV
Trigger: AACCCGGAACTTTTGGGACAATATATGATTGATGCA...CTTTAAAGCATCCATTTGTGTTAAGAGCTTGGTAAACATGGAAAACTTGGTTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
CDS GCA 72 bp GAGGTTTTCCAGGTGAGCGTCCAGTTCTGTCTTCTCTaGCTGGCCAAGCTTTTCTTCTGTGAACTGCACGGC +
Preference number: 6 (lower is better)
Translates to: EVFQVSVQFCLL*LAKLFFCELHG
Trigger: GCCGTGCAGTTCACAGAAGAAAAGCTTGGCCAGGCAGAGAAGACAGAACTGGACGCTCACCTGGAAAACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS CAA 72 bp CAAGGCTACCCGTTGAAGCCTGGGCAGAAGGACCAATaGCATTTGACAAAGCATATGGCACTGGTGTCCCAG +
Preference number: 6 (lower is better)
Translates to: QGYPLKPGQKDQ*HLTKHMALVSQ
Trigger: CTGGGACACCAGTGCCATATGCTTTGTCAAATGCAATTGGTCCTTCTGCCCAGGCTTCAACGGGTAGCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199350.5
ENSMUST00000199531.5
ENSMUST00000199854.5
ENSMUST00000200532.2
CDS CAA 72 bp TACCCGTTGAAGCCTGGGCAGAAGGACCAATTGCATTaGACAAAGCATATGGCACTGGTGTCCCAGAGGTCT +
Preference number: 6 (lower is better)
Translates to: YPLKPGQKDQLH*TKHMALVSQRS
Trigger: AGACCTCTGGGACACCAGTGCCATATGCTTTGTCAAATGCAATTGGTCCTTCTGCCCAGGCTTCAACGGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199350.5
ENSMUST00000199531.5
ENSMUST00000199854.5
ENSMUST00000200532.2
CDS CAA 72 bp CCCTGGGCCAAACTCAGTTCCTGCATCAATCATATATaGTCCCAAAAGTTCCGGGTTGTTTATACGACTTGG +
Preference number: 6 (lower is better)
Translates to: PWAKLSSCINHI*SQKFRVVYTTW
Trigger: CCAAGTCGTATAAACAACCCGGAACTTTTGGGACAATATATGATTGATGCAGGAACTGAGTTTGGCCCAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS CAA 72 bp CTAGCCTTCCTGTTGTTGCTGGATTCTTTAAGGTCATaGAGGTTAGAAGGACAGGTGATTACAAGGCTACCC +
Preference number: 6 (lower is better)
Translates to: LAFLLLLDSLRS*RLEGQVITRLP
Trigger: GGGTAGCCTTGTAATCACCTGTCCTTCTAACCTCAATGACCTTAAAGAATCCAGCAACAACAGGAAGGCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199350.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS TCA 72 bp GACACTGAACACAGTGATTACCTCATCGGCCAGGAGTaGCAGTTCAGTGCTATTTGCAGCATCATAATCATA +
Preference number: 6 (lower is better)
Translates to: DTEHSDYLIGQE*QFSAICSIIII
Trigger: TATGATTATGATGCTGCAAATAGCACTGAACTGTCACTCCTGGCCGATGAGGTAATCACTGTGTTCAGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS GCA 72 bp ATTTCCATAAGCTGTCCCTGGGCCAAACTCAGTTCCTaGATCAATCATATATTGTCCCAAAAGTTCCGGGTT +
Preference number: 6 (lower is better)
Translates to: ISISCPWAKLSS*INHILSQKFRV
Trigger: AACCCGGAACTTTTGGGACAATATATGATTGATGCAGGAACTGAGTTTGGCCCAGGGACAGCTTATGGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS CAA 90 bp ATAAGCTGTCCCTGGGCCAAACTCAGTTCCTGCATCAATCATATATaGTCCCAAAAGTTCCGGGTTGTTTATACGACTTGGTGCTTTTCT +
Preference number: 6 (lower is better)
Translates to: ISCPWAKLSSCINHI*SQKFRVVYTTWCFS
Trigger: AGAAAAGCACCAAGTCGTATAAACAACCCGGAACTTTTGGGACAATATATGATTGATGCAGGAACTGAGTTTGGCCCAGGGACAGCTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS CAA 90 bp CTCAAGCAGGAGTCGGGTAATCTCTGCCTGACGATCAAATTCACTTaGAGTTATTCTCAATTCCTGTTCAGATTTTGTCACTTCCTCTGC +
Preference number: 6 (lower is better)
Translates to: LKQESGNLCLTIKFT*SYSQFLFRFCHFLC
Trigger: GCAGAGGAAGTGACAAAATCTGAACAGGAATTGAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCCGACTCCTGCTTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000198254.5
ENSMUST00000200532.2
CDS CAA 90 bp CTCAAGCAGGAGTCGGGTAATCTCTGCCTGACGATCAAATTCACTTaGAGTTATTCTCAATTCCTGTTCAGACTTCAGCCATTTTACATG +
Preference number: 6 (lower is better)
Translates to: LKQESGNLCLTIKFT*SYSQFLFRLQPFYM
Trigger: CATGTAAAATGGCTGAAGTCTGAACAGGAATTGAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCCGACTCCTGCTTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199854.5
CDS TCA 72 bp TTTCTTAAAGGAGTGAGGAAATTTAAGGCTGATGTTTaGATCAGCTCTCGGTCAGCTGTTCCAATTCGCTTC +
Preference number: 6 (lower is better)
Translates to: FLKGVRKFKADV*ISSRSAVPIRF
Trigger: GAAGCGAATTGGAACAGCTGACCGAGAGCTGATTCAAACATCAGCCTTAAATTTCCTCACTCCTTTAAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS CCA 72 bp TCCACATTTAATAAGGGCATTTCCATAAGCTGTCCCTaGGCCAAACTCAGTTCCTGCATCAATCATATATTG +
Preference number: 6 (lower is better)
Translates to: STFNKGISISCP*AKLSSCINHIL
Trigger: CAATATATGATTGATGCAGGAACTGAGTTTGGCCCAGGGACAGCTTATGGAAATGCCCTTATTAAATGTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS CAA 90 bp TATCCAGTTTCTCATAAACAAATTCTTCTATCCTGGCATTTGGATTaGGCTGCAACAGCACTTCGGTCTGCTTCATTATCTTTTCTGTCC +
Preference number: 6 (lower is better)
Translates to: YPVSHKQILLSWHLD*AATALRSASLSFLS
Trigger: GGACAGAAAAGATAATGAAGCAGACCGAAGTGCTGTTGCAGCCAAATCCAAATGCCAGGATAGAAGAATTTGTTTATGAGAAACTGGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS CAA 72 bp TCTCATAAACAAATTCTTCTATCCTGGCATTTGGATTaGGCTGCAACAGCACTTCGGTCTGCTTCATTATCT +
Preference number: 6 (lower is better)
Translates to: SHKQILLSWHLD*AATALRSASLS
Trigger: AGATAATGAAGCAGACCGAAGTGCTGTTGCAGCCAAATCCAAATGCCAGGATAGAAGAATTTGTTTATGAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS CAA 72 bp CCTGCATCAATCATATATTGTCCCAAAAGTTCCGGGTaGTTTATACGACTTGGTGCTTTTCTATCCAGTTTC +
Preference number: 6 (lower is better)
Translates to: PASIIYCPKSSG*FIRLGAFLSSF
Trigger: GAAACTGGATAGAAAAGCACCAAGTCGTATAAACAACCCGGAACTTTTGGGACAATATATGATTGATGCAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000163279.6
ENSMUST00000198254.5
ENSMUST00000199531.5
ENSMUST00000199854.5
CDS GCA 72 bp TATTCTCAATTCCTGTTCAGATTTTGTCACTTCCTCTaGCCAAATCTTCAGCCATTTTACATGCAGGAAGTT +
Preference number: 6 (lower is better)
Translates to: YSQFLFRFCHFL*PNLQPFYMQEV
Trigger: AACTTCCTGCATGTAAAATGGCTGAAGATTTGGGCAGAGGAAGTGACAAAATCTGAACAGGAATTGAGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200532.2