Pregenerated sensors for SH3GL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003200Ensembl transcript IDs: ENSMUST00000003268.11, ENSMUST00000233803.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCATCGCCAGCAACGGGCTGGGAAGGGTTGAAACAGCTGGAAGCTaGTACCACCAGGAAGGCAATAGAACCTCAGGGTGGGCCTTTCCG | + |
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Preference number: 1 (lower is better) Translates to: PIASNGLGRVETAGS*YHQEGNRTSGWAFP Trigger: CGGAAAGGCCCACCCTGAGGTTCTATTGCCTTCCTGGTGGTATCAGCTTCCAGCTGTTTCAACCCTTCCCAGCCCGTTGCTGGCGATGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| 3UTR TCA 90 bp | AATAGAGCCCAGGCTGGAGGCCTCCATTACTGGAACATGGCAGGGTaGGGCAGAGCTGGGTCTATGGCCAGCCTAGCCTGCTGGTTGAAA | + |
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Preference number: 1 (lower is better) Translates to: NRAQAGGLHYWNMAG*GRAGSMASLACWLK Trigger: TTTCAACCAGCAGGCTAGGCTGGCCATAGACCCAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCAGCCTGGGCTCTATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR CCA 90 bp | GGTGCCAGGGACCTGGGAATGTCCACTCTTCAAGGCCTTTGTGCTTaGTCTTCAACAGAGCTGAGCTGGGTCTGTGGTCCCATGGGAAGT | + |
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Preference number: 1 (lower is better) Translates to: GARDLGMSTLQGLCA*SSTELSWVCGPMGS Trigger: ACTTCCCATGGGACCACAGACCCAGCTCAGCTCTGTTGAAGACCAAGCACAAAGGCCTTGAAGAGTGGACATTCCCAGGTCCCTGGCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR GCA 90 bp | AAGTGTACACATTTGTGCCTTGTGCACTTCTTCATGAGCAGCAGGTaGCAGGTGTCTCTGTGTGCTGAGCTGGGGAGCTGGCCAGCCTCT | + |
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Preference number: 1 (lower is better) Translates to: KCTHLCLVHFFMSSR*QVSLCAELGSWPAS Trigger: AGAGGCTGGCCAGCTCCCCAGCTCAGCACACAGAGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGTGTACACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR GCA 90 bp | AGAGCTGAGCTGGGTCTGTGGTCCCATGGGAAGTGTACACATTTGTaGCTTGTGCACTTCTTCATGAGCAGCAGGTGCCAGGTGTCTCTG | + |
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Preference number: 1 (lower is better) Translates to: RAELGLWSHGKCTHL*LVHFFMSSRCQVSL Trigger: CAGAGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGTGTACACTTCCCATGGGACCACAGACCCAGCTCAGCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR CCA 90 bp | CAGTTCATTTCAGCACAGGCTGGAGCAGGACAGTGTTGCCTATCCAGGGGGCGTCCTGGAGAGGGGGCATaGGCCCATCGCCAGCAACGG | + |
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Preference number: 2 (lower is better) Translates to: QFISAQAGAGQCCLSRGRPGEGA*AHRQQR Trigger: CCGTTGCTGGCGATGGGCCCATGCCCCCTCTCCAGG...ACGCCCCCTGGATAGGCAACACTGTCCTGCTCCAGCCTGTGCTGAAATGAACTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR CCA 90 bp | CCAGGCTGGAGGCCTCCATTACTGGAACATGGCAGGGTGAGGCAGAGCTGGGTCCCTCTGCTTGCAGGCTaGGGATTCCAAGGACCTGCC | + |
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Preference number: 2 (lower is better) Translates to: PGWRPPLLEHGRVRQSWVPLLAG*GFQGPA Trigger: GGCAGGTCCTTGGAATCCCCAGCCTGCAAGCAGAGG...GACCCAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCAGCCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR TCA 90 bp | TGTCTCTGTGTGCTGAGCTGGGGAGCTGGCCAGCCTCTGCTTGCAGGCTGGGGACGGGCTGGGAAGGGTTaGAACAGCTGGAAGCTGATA | + |
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Preference number: 2 (lower is better) Translates to: CLCVLSWGAGQPLLAGWGRAGKG*NSWKLI Trigger: TATCAGCTTCCAGCTGTTTCAACCCTTCCCAGCCCG...TCCCCAGCCTGCAAGCAGAGGCTGGCCAGCTCCCCAGCTCAGCACACAGAGACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR TCA 90 bp | CCCAGGCTGGAGGCCTCCATTACTGGAACATGGCAGGGTGAGGCAGAGCTGGGTGGTCTTCAACAGAGCTaGGCTGGGTCTGTGGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: PRLEASITGTWQGEAELGGLQQS*AGSVVP Trigger: TGGGACCACAGACCCAGCTCAGCTCTGTTGAAGACC...ACCCAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCAGCCTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR GCA 90 bp | CCAGGCTGGAGGCCTCCATTACTGGAACATGGCAGGGTGAGGCAGAGCTGGGTCTGGCTCAAGGGAAGGTaGCAGGGACCTGGGAATGTC | + |
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Preference number: 2 (lower is better) Translates to: PGWRPPLLEHGRVRQSWVWLKGR*QGPGNV Trigger: GACATTCCCAGGTCCCTGGCACCTTCCCTTGAGCCA...GACCCAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCAGCCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR GCA 90 bp | GAGCCCAGGCTGGAGGCCTCCATTACTGGAACATGGCAGGGTGAGGCAGAGCTGGCATTAGACTGCTGCTaGACTGTGACTGGCAGCGGT | + |
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Preference number: 2 (lower is better) Translates to: EPRLEASITGTWQGEAELALDCC*TVTGSG Trigger: ACCGCTGCCAGTCACAGTGCAGCAGCAGTCTAATGC...CAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCAGCCTGGGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR CAA 90 bp | TGGAGAGGGGGCATGGGCCCATCGCCAGCAACGGGCTGGGAAGGGTaGAAACAGCTGGAAGCTGATACCACCAGGAAGGCAATAGAACCT | + |
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Preference number: 2 (lower is better) Translates to: WRGGMGPSPATGWEG*KQLEADTTRKAIEP Trigger: AGGTTCTATTGCCTTCCTGGTGGTATCAGCTTCCAGCTGTTTCAACCCTTCCCAGCCCGTTGCTGGCGATGGGCCCATGCCCCCTCTCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| 3UTR-3UTR GCA 90 bp | TGCTTGGTCTTCAACAGAGCTGAGCTGGGTCTGTGGTCCCATGGGAAGTGTACAGAGCTGGCCAGCCTCTaGTTGCAGGCTGGGGATTCC | + |
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Preference number: 2 (lower is better) Translates to: CLVFNRAELGLWSHGKCTELASL*LQAGDS Trigger: GGAATCCCCAGCCTGCAAGCAGAGGCTGGCCAGCTC...TGTACACTTCCCATGGGACCACAGACCCAGCTCAGCTCTGTTGAAGACCAAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGCTGGAGGCCTCCATTACTGGAACATGGCAGGGTGAGGCAGAGCTGGGTGGGTCTGTGGTCCCATaGGAAGTGTACACATTTGTG | + |
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Preference number: 2 (lower is better) Translates to: PRLEASITGTWQGEAELGGSVVP*EVYTFV Trigger: CACAAATGTGTACACTTCCCATGGGACCACAGACCC...ACCCAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCAGCCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR CAA 90 bp | AGGTGCCAGGGACCTGGGAATGTCCACTCTTCAAGGCCTTTGTGCTaGGTCTTCAACAGAGCTGAGCTGGGTCTGTGGTCCCATGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: RCQGPGNVHSSRPLC*VFNRAELGLWSHGK Trigger: CTTCCCATGGGACCACAGACCCAGCTCAGCTCTGTTGAAGACCAAGCACAAAGGCCTTGAAGAGTGGACATTCCCAGGTCCCTGGCACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR TCA 90 bp | TGGAGGCCTCCATTACTGGAACATGGCAGGGTGAGGCAGAGCTGGGTCTATGGCTTGTGCACTTCTTCATaGGCAGCAGGTGCCAGGTGT | + |
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Preference number: 2 (lower is better) Translates to: WRPPLLEHGRVRQSWVYGLCTSS*AAGARC Trigger: ACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAA...GCCATAGACCCAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR GCA 90 bp | TGGAGGCCTCCATTACTGGAACATGGCAGGGTGAGGCAGAGCTGGGTCTATGGCTTCATGAGCAGCAGGTaGCAGGTGTCTCTGTGTGCT | + |
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Preference number: 2 (lower is better) Translates to: WRPPLLEHGRVRQSWVYGFMSSR*QVSLCA Trigger: AGCACACAGAGACACCTGGCACCTGCTGCTCATGAA...GCCATAGACCCAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR CCA 90 bp | AGGGACCTGGGAATGTCCACTCTTCAAGGCCTTTGTGCTTGGTCTTCAACAGAGCTCTGTGTGCTGAGCTaGGGAGCTGGCCAGCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: RDLGMSTLQGLCAWSSTELCVLS*GAGQPL Trigger: CAGAGGCTGGCCAGCTCCCCAGCTCAGCACACAGAG...CTCTGTTGAAGACCAAGCACAAAGGCCTTGAAGAGTGGACATTCCCAGGTCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR CAA 90 bp | AACAGAGCTGAGCTGGGTCTGTGGTCCCATGGGAAGTGTACACATTaGTGCCTTGTGCACTTCTTCATGAGCAGCAGGTGCCAGGTGTCT | + |
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Preference number: 2 (lower is better) Translates to: NRAELGLWSHGKCTH*CLVHFFMSSRCQVS Trigger: AGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGTGTACACTTCCCATGGGACCACAGACCCAGCTCAGCTCTGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR TCA 90 bp | GAAGCTGATACCACCAGGAAGGCAATAGAACCTCAGGGTGGGCCTTTCCGAGTCGAAACAGCTGGAAGCTaGTACCACCAGGAAGGCAAT | + |
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Preference number: 2 (lower is better) Translates to: EADTTRKAIEPQGGPFRVETAGS*YHQEGN Trigger: ATTGCCTTCCTGGTGGTATCAGCTTCCAGCTGTTTC...GACTCGGAAAGGCCCACCCTGAGGTTCTATTGCCTTCCTGGTGGTATCAGCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| 3UTR-3UTR GCA 90 bp | TTGAAACAGCTGGAAGCTGATACCACCAGGAAGGCAATAGAACCTCAGGGTGGGGCATTAGACTGCTGCTaGACTGTGACTGGCAGCGGT | + |
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Preference number: 2 (lower is better) Translates to: LKQLEADTTRKAIEPQGGALDCC*TVTGSG Trigger: ACCGCTGCCAGTCACAGTGCAGCAGCAGTCTAATGC...CCCACCCTGAGGTTCTATTGCCTTCCTGGTGGTATCAGCTTCCAGCTGTTTCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| 3UTR-3UTR GCA 90 bp | CCAGGGATAAGCCACGGGTTATGGGGCAGCTGTAGAGAAGAATGTAATAGAGCCAAAGGACCTGCCAGCTaGCTGTGGTCAGCTTCAGTC | + |
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Preference number: 2 (lower is better) Translates to: PGISHGLWGSCREECNRAKGPAS*LWSASV Trigger: GACTGAAGCTGACCACAGGCAGCTGGCAGGTCCTTT...GGCTCTATTACATTCTTCTCTACAGCTGCCCCATAACCCGTGGCTTATCCCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR TCA 90 bp | TGCTTGGTCTTCAACAGAGCTGAGCTGGGTCTGTGGTCCCATGGGAAGTGTACAGAAACAGCTGGAAGCTaGTACCACCAGGAAGGCAAT | + |
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Preference number: 2 (lower is better) Translates to: CLVFNRAELGLWSHGKCTETAGS*YHQEGN Trigger: ATTGCCTTCCTGGTGGTATCAGCTTCCAGCTGTTTC...TGTACACTTCCCATGGGACCACAGACCCAGCTCAGCTCTGTTGAAGACCAAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR GCA 90 bp | GTCCACTCTTCAAGGCCTTTGTGCTTGGTCTTCAACAGAGCTGAGCTGGGTCTGAAGTGTACACATTTGTaGCTTGTGCACTTCTTCATG | + |
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Preference number: 2 (lower is better) Translates to: VHSSRPLCLVFNRAELGLKCTHL*LVHFFM Trigger: CATGAAGAAGTGCACAAGGCACAAATGTGTACACTT...CAGACCCAGCTCAGCTCTGTTGAAGACCAAGCACAAAGGCCTTGAAGAGTGGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR CCA 90 bp | TGGGAAGGGTTGAAACAGCTGGAAGCTGATACCACCAGGAAGGCAATAGAACCTCTCGCCATCATTCTCTaGCTCAAAATCATAAAGCGC | + |
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Preference number: 2 (lower is better) Translates to: WEGLKQLEADTTRKAIEPLAIIL*LKIIKR Trigger: GCGCTTTATGATTTTGAGCCAGAGAATGATGGCGAG...AGGTTCTATTGCCTTCCTGGTGGTATCAGCTTCCAGCTGTTTCAACCCTTCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233803.2 |
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| 3UTR-3UTR CAA 90 bp | AGCCCAGGCTGGAGGCCTCCATTACTGGAACATGGCAGGGTGAGGCAGAGCTGGCTGGCCAGCCTCTGCTaGCAGGCTGGGGATTCCAAG | + |
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Preference number: 3 (lower is better) Translates to: SPGWRPPLLEHGRVRQSWLASLC*QAGDSK Trigger: CTTGGAATCCCCAGCCTGCAAGCAGAGGCTGGCCAG...CCAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCAGCCTGGGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR CAA 90 bp | ACTGTGACTGGCAGCGGTGTAAAGGCCCAGTCACTGAGGCAGAGGCACCAGCACAGGGGTGGCATGCTCTaGCTGGGCATCCTGATGGGC | + |
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Preference number: 3 (lower is better) Translates to: TVTGSGVKAQSLRQRHQHRGGML*LGILMG Trigger: GCCCATCAGGATGCCCAGCAAGAGCATGCCACCCCT...GTGCTGGTGCCTCTGCCTCAGTGACTGGGCCTTTACACCGCTGCCAGTCACAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233803.2 |
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| 3UTR TCA 72 bp | CTTCATGAGCAGCAGGTGCCAGGTGTCTCTGTGTGCTaGGCTGGGGAGCTGGCCAGCCTCTGCTTGCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: LHEQQVPGVSVC*AGELASLCLQA Trigger: AGCCTGCAAGCAGAGGCTGGCCAGCTCCCCAGCTCAGCACACAGAGACACCTGGCACCTGCTGCTCATGAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR CCA 72 bp | TGGAGAGGGGGCATGGGCCCATCGCCAGCAACGGGCTaGGAAGGGTTGAAACAGCTGGAAGCTGATACCACC | + |
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Preference number: 3 (lower is better) Translates to: WRGGMGPSPATG*EGLKQLEADTT Trigger: GGTGGTATCAGCTTCCAGCTGTTTCAACCCTTCCCAGCCCGTTGCTGGCGATGGGCCCATGCCCCCTCTCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| 3UTR CCA 72 bp | ATAGAGCCCAGGCTGGAGGCCTCCATTACTGGAACATaGCAGGGTGAGGCAGAGCTGGGTCTATGGCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: IEPRLEASITGT*QGEAELGLWPA Trigger: GGCTGGCCATAGACCCAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCAGCCTGGGCTCTAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR-3UTR CAA 90 bp | ATTAGACTGCTGCTGCACTGTGACTGGCAGCGGTGTAAAGGCCCAGTCACTGAGAAAGCGCCTTGCAGCTaGGCTGGTCCAGGGGTGGCA | + |
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Preference number: 3 (lower is better) Translates to: IRLLLHCDWQRCKGPVTEKAPCS*AGPGVA Trigger: TGCCACCCCTGGACCAGCCAAGCTGCAAGGCGCTTT...CTCAGTGACTGGGCCTTTACACCGCTGCCAGTCACAGTGCAGCAGCAGTCTAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233803.2 |
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| 3UTR-3UTR CAA 90 bp | AGCACCTTGGCATTAGACTGCTGCTGCACTGTGACTGGCAGCGGTGTAAAGGCCACGGGCTGGGAAGGGTaGAAACAGCTGGAAGCTGAT | + |
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Preference number: 3 (lower is better) Translates to: STLALDCCCTVTGSGVKATGWEG*KQLEAD Trigger: ATCAGCTTCCAGCTGTTTCAACCCTTCCCAGCCCGT...GGCCTTTACACCGCTGCCAGTCACAGTGCAGCAGCAGTCTAATGCCAAGGTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| 3UTR GCA 72 bp | CATTTGTGCCTTGTGCACTTCTTCATGAGCAGCAGGTaGCAGGTGTCTCTGTGTGCTGAGCTGGGGAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: HLCLVHFFMSSR*QVSLCAELGSW Trigger: CCAGCTCCCCAGCTCAGCACACAGAGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR CCA 72 bp | GCAATGGAGCTGGCTCAAGGGAAGGTGCCAGGGACCTaGGAATGTCCACTCTTCAAGGCCTTTGTGCTTGGT | + |
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Preference number: 3 (lower is better) Translates to: AMELAQGKVPGT*ECPLFKAFVLG Trigger: ACCAAGCACAAAGGCCTTGAAGAGTGGACATTCCCAGGTCCCTGGCACCTTCCCTTGAGCCAGCTCCATTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR TCA 72 bp | AGCAACGGGCTGGGAAGGGTTGAAACAGCTGGAAGCTaGTACCACCAGGAAGGCAATAGAACCTCAGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: SNGLGRVETAGS*YHQEGNRTSGW Trigger: CCACCCTGAGGTTCTATTGCCTTCCTGGTGGTATCAGCTTCCAGCTGTTTCAACCCTTCCCAGCCCGTTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| 3UTR GCA 72 bp | CAGGGACCTGGGAATGTCCACTCTTCAAGGCCTTTGTaGTTGGTCTTCAACAGAGCTGAGCTGGGTCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: QGPGNVHSSRPL*LVFNRAELGLW Trigger: CCACAGACCCAGCTCAGCTCTGTTGAAGACCAAGCACAAAGGCCTTGAAGAGTGGACATTCCCAGGTCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR TCA 72 bp | GGACCTGCCAGCTGCCTGTGGTCAGCTTCAGTCACATaGATAAGTAGCAATGGAGCTGGCTCAAGGGAAGGT | + |
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Preference number: 3 (lower is better) Translates to: GPASCLWSASVT*ISSNGAGSREG Trigger: ACCTTCCCTTGAGCCAGCTCCATTGCTACTTATTCATGTGACTGAAGCTGACCACAGGCAGCTGGCAGGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR GCA 72 bp | CTGGGTCTGTGGTCCCATGGGAAGTGTACACATTTGTaGCTTGTGCACTTCTTCATGAGCAGCAGGTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: LGLWSHGKCTHL*LVHFFMSSRCQ Trigger: CTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGTGTACACTTCCCATGGGACCACAGACCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR TCA 72 bp | GGAAGTGTACACATTTGTGCCTTGTGCACTTCTTCATaGGCAGCAGGTGCCAGGTGTCTCTGTGTGCTGAGC | + |
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Preference number: 3 (lower is better) Translates to: GSVHICALCTSS*AAGARCLCVLS Trigger: GCTCAGCACACAGAGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGTGTACACTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR CCA 72 bp | TTGTGCTTGGTCTTCAACAGAGCTGAGCTGGGTCTGTaGTCCCATGGGAAGTGTACACATTTGTGCCTTGTG | + |
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Preference number: 3 (lower is better) Translates to: LCLVFNRAELGL*SHGKCTHLCLV Trigger: CACAAGGCACAAATGTGTACACTTCCCATGGGACCACAGACCCAGCTCAGCTCTGTTGAAGACCAAGCACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR GCA 90 bp | CTGCCTGCCTCTAGAGAGCCTGGAGAGGGGGCATGGGCCCATCGCCAGCAACGGTCTGACCAGCACCTCTaGCACGGCCTTGCTGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: LPASREPGEGAWAHRQQRSDQHL*HGLAGD Trigger: GTCACCAGCAAGGCCGTGGCAGAGGTGCTGGTCAGA...CCGTTGCTGGCGATGGGCCCATGCCCCCTCTCCAGGCTCTCTAGAGGCAGGCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS-3UTR TCA 90 bp | TCCAAGGACCTGCCTGCCTCTAGAGAGCCTGGAGAGGGGGCATGGGCCCATCGCCACCAACCTTCTCGCTaGCCAGCTGGCTCGCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: SKDLPASREPGEGAWAHRHQPSR*PAGSPC Trigger: ACAAGGCGAGCCAGCTGGTCAGCGAGAAGGTTGGTG...GCGATGGGCCCATGCCCCCTCTCCAGGCTCTCTAGAGGCAGGCAGGTCCTTGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS-3UTR GCA 90 bp | CTGGGGAGCTGGCCAGCCTCTGCTTGCAGGCTGGGGATTCCAAGGACCTGCCTGTGCCATGGCGAACCATaGACTCTCCCAACAGACCCT | + |
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Preference number: 4 (lower is better) Translates to: LGSWPASACRLGIPRTCLCHGEP*TLPTDP Trigger: AGGGTCTGTTGGGAGAGTGCATGGTTCGCCATGGCA...CAGGCAGGTCCTTGGAATCCCCAGCCTGCAAGCAGAGGCTGGCCAGCTCCCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR CCA 90 bp | TCCAAGGACCTGCCTGCCTCTAGAGAGCCTGGAGAGGGGGCATGGGCCCATCGCCAGCCAGGCGCTTCATaGACTCACCTGCATCTAGCA | + |
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Preference number: 4 (lower is better) Translates to: SKDLPASREPGEGAWAHRQPGAS*THLHLA Trigger: TGCTAGATGCAGGTGAGTCCATGAAGCGCCTGGCTG...GCGATGGGCCCATGCCCCCTCTCCAGGCTCTCTAGAGGCAGGCAGGTCCTTGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS-3UTR CCA 90 bp | CCCAGGCTGGAGGCCTCCATTACTGGAACATGGCAGGGTGAGGCAGAGCTGGGTCAGCCAGGCGCTTCATaGACTCACCTGCATCTAGCA | + |
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Preference number: 4 (lower is better) Translates to: PRLEASITGTWQGEAELGQPGAS*THLHLA Trigger: TGCTAGATGCAGGTGAGTCCATGAAGCGCCTGGCTG...ACCCAGCTCTGCCTCACCCTGCCATGTTCCAGTAATGGAGGCCTCCAGCCTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR TCA 90 bp | CCAGCAACGGGCTGGGAAGGGTTGAAACAGCTGGAAGCTGATACCACCAGGAAGCACCAACCTTCTCGCTaGCCAGCTGGCTCGCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: PATGWEGLKQLEADTTRKHQPSR*PAGSPC Trigger: ACAAGGCGAGCCAGCTGGTCAGCGAGAAGGTTGGTG...CTTCCTGGTGGTATCAGCTTCCAGCTGTTTCAACCCTTCCCAGCCCGTTGCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS-3UTR GCA 90 bp | CATTTCAGCACAGGCTGGAGCAGGACAGTGTTGCCTATCCAGGGGGCGTGGGGTAAGCCTGATTGGCCGTaGAGCATCCCCTCATACCAG | + |
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Preference number: 4 (lower is better) Translates to: HFSTGWSRTVLPIQGAWGKPDWP*SIPSYQ Trigger: CTGGTATGAGGGGATGCTGCACGGCCAATCAGGCTT...ACCCCACGCCCCCTGGATAGGCAACACTGTCCTGCTCCAGCCTGTGCTGAAATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR CCA 90 bp | CATTTCAGCACAGGCTGGAGCAGGACAGTGTTGCCTATCCAGGGGGCGTGGGGTACCAGGGCCGAGAGCTaGCTCACCTGCTCTATATCA | + |
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Preference number: 4 (lower is better) Translates to: HFSTGWSRTVLPIQGAWGTRAES*LTCSIS Trigger: TGATATAGAGCAGGTGAGCCAGCTCTCGGCCCTGGT...ACCCCACGCCCCCTGGATAGGCAACACTGTCCTGCTCCAGCCTGTGCTGAAATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR CCA 90 bp | AGGGAAGGTGCCAGGGACCTGGGAATGTCCACTCTTCAAGGCCTTTGTGCTTGGTGGCTGGTCCAGGGGTaGCATGCTCTTGCTGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: REGARDLGMSTLQGLCAWWLVQG*HALAGH Trigger: ATGCCCAGCAAGAGCATGCCACCCCTGGACCAGCCA...CCAAGCACAAAGGCCTTGAAGAGTGGACATTCCCAGGTCCCTGGCACCTTCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR TCA 90 bp | CAGTTCTCGTCGATCTGGTTGGTAAGCGTGATGAGGTCCCCCTCACGGAAGCCCGATATTCTATGGTTCTaGCCAGCACCTCTGCCACGG | + |
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Preference number: 4 (lower is better) Translates to: QFSSIWLVSVMRSPSRKPDILWF*PAPLPR Trigger: CCGTGGCAGAGGTGCTGGTCAGAACCATAGAATATC...GGGCTTCCGTGAGGGGGACCTCATCACGCTTACCAACCAGATCGACGAGAACTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233803.2 |
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| CDS-3UTR TCA 90 bp | ACATTTGTGCCTTGTGCACTTCTTCATGAGCAGCAGGTGCCAGGTGTCTCTGTGGAGTGGGAAGAAGCCTaGTTGGCCGTGCAGCATCCC | + |
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Preference number: 4 (lower is better) Translates to: TFVPCALLHEQQVPGVSVEWEEA*LAVQHP Trigger: GGGATGCTGCACGGCCAATCAGGCTTCTTCCCACTC...CACAGAGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR GCA 90 bp | ACATTTGTGCCTTGTGCACTTCTTCATGAGCAGCAGGTGCCAGGTGTCTCTGTGTCTGACCAGCACCTCTaGCACGGCCTTGCTGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: TFVPCALLHEQQVPGVSVSDQHL*HGLAGD Trigger: GTCACCAGCAAGGCCGTGGCAGAGGTGCTGGTCAGA...CACAGAGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR GCA 90 bp | ACTGTGACTGGCAGCGGTGTAAAGGCCCAGTCACTGAGGCAGAGGCACCAGCACGAGGCTGGGTTAGGCTaGAGATATTCTATGGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: TVTGSGVKAQSLRQRHQHEAGLG*RYSMVL Trigger: CAGAACCATAGAATATCTGCAGCCTAACCCAGCCTC...GTGCTGGTGCCTCTGCCTCAGTGACTGGGCCTTTACACCGCTGCCAGTCACAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233803.2 |
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| CDS-3UTR GCA 90 bp | AGCACCTTGGCATTAGACTGCTGCTGCACTGTGACTGGCAGCGGTGTAAAGGCCCTCCACCTAGTTCCTTaGCATGGCGAACCATGCACT | + |
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Preference number: 4 (lower is better) Translates to: STLALDCCCTVTGSGVKALHLVP*HGEPCT Trigger: AGTGCATGGTTCGCCATGGCAAGGAACTAGGTGGAG...GGCCTTTACACCGCTGCCAGTCACAGTGCAGCAGCAGTCTAATGCCAAGGTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| 3UTR CAA 72 bp | TGCCAGGGACCTGGGAATGTCCACTCTTCAAGGCCTTaGTGCTTGGTCTTCAACAGAGCTGAGCTGGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: CQGPGNVHSSRP*CLVFNRAELGL Trigger: CAGACCCAGCTCAGCTCTGTTGAAGACCAAGCACAAAGGCCTTGAAGAGTGGACATTCCCAGGTCCCTGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR TCA 90 bp | GTCCACTCTTCAAGGCCTTTGTGCTTGGTCTTCAACAGAGCTGAGCTGGGTCTGGCACCTGCACGTAGCTaGGTGGGAAGAAGCCTGATT | + |
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Preference number: 4 (lower is better) Translates to: VHSSRPLCLVFNRAELGLAPARS*VGRSLI Trigger: AATCAGGCTTCTTCCCACTCAGCTACGTGCAGGTGC...CAGACCCAGCTCAGCTCTGTTGAAGACCAAGCACAAAGGCCTTGAAGAGTGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR GCA 90 bp | CAGCTGGAAGCTGATACCACCAGGAAGGCAATAGAACCTCAGGGTGGGCCTTTCCTCCACCTAGTTCCTTaGCATGGCGAACCATGCACT | + |
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Preference number: 4 (lower is better) Translates to: QLEADTTRKAIEPQGGPFLHLVP*HGEPCT Trigger: AGTGCATGGTTCGCCATGGCAAGGAACTAGGTGGAG...GAAAGGCCCACCCTGAGGTTCTATTGCCTTCCTGGTGGTATCAGCTTCCAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS-3UTR GCA 90 bp | ACACATTTGTGCCTTGTGCACTTCTTCATGAGCAGCAGGTGCCAGGTGTCTCTGGGCTGTGATCTTAGGTaGTGGGGCACAGGGGAATCC | + |
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Preference number: 4 (lower is better) Translates to: THLCLVHFFMSSRCQVSLGCDLR*WGTGES Trigger: GGATTCCCCTGTGCCCCAGCACCTAAGATCACAGCC...CAGAGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| 3UTR CAA 72 bp | GAGCTGGGTCTGTGGTCCCATGGGAAGTGTACACATTaGTGCCTTGTGCACTTCTTCATGAGCAGCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: ELGLWSHGKCTH*CLVHFFMSSRC Trigger: GCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGTGTACACTTCCCATGGGACCACAGACCCAGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR TCA 90 bp | ATGTCCACTCTTCAAGGCCTTTGTGCTTGGTCTTCAACAGAGCTGAGCTGGGTCGATATTCTATGGTTCTaGCCAGCACCTCTGCCACGG | + |
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Preference number: 4 (lower is better) Translates to: MSTLQGLCAWSSTELSWVDILWF*PAPLPR Trigger: CCGTGGCAGAGGTGCTGGTCAGAACCATAGAATATC...GACCCAGCTCAGCTCTGTTGAAGACCAAGCACAAAGGCCTTGAAGAGTGGACAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR GCA 90 bp | GAAGCTGATACCACCAGGAAGGCAATAGAACCTCAGGGTGGGCCTTTCCGAGTCGAGGCTGGGTTAGGCTaGAGATATTCTATGGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: EADTTRKAIEPQGGPFRVEAGLG*RYSMVL Trigger: CAGAACCATAGAATATCTGCAGCCTAACCCAGCCTC...GACTCGGAAAGGCCCACCCTGAGGTTCTATTGCCTTCCTGGTGGTATCAGCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS-3UTR GCA 90 bp | AGCACCTTGGCATTAGACTGCTGCTGCACTGTGACTGGCAGCGGTGTAAAGGCCAATTTCTTCAGGTGGTaGTGGATCTCCTTCAGATCC | + |
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Preference number: 4 (lower is better) Translates to: STLALDCCCTVTGSGVKANFFRW*WISFRS Trigger: GGATCTGAAGGAGATCCAGCACCACCTGAAGAAATT...GGCCTTTACACCGCTGCCAGTCACAGTGCAGCAGCAGTCTAATGCCAAGGTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS-3UTR CCA 90 bp | GTGTTTCTAGAGCACCTTGGCATTAGACTGCTGCTGCACTGTGACTGGCAGCGGTCCAATTTCTTCAGGTaGTGCTGGATCTCCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: VFLEHLGIRLLLHCDWQRSNFFR*CWISFR Trigger: TCTGAAGGAGATCCAGCACCACCTGAAGAAATTGGA...CCGCTGCCAGTCACAGTGCAGCAGCAGTCTAATGCCAAGGTGCTCTAGAAACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS-3UTR CCA 90 bp | GAAGCTGATACCACCAGGAAGGCAATAGAACCTCAGGGTGGGCCTTTCCGAGTCCTCGCCATCATTCTCTaGCTCAAAATCATAAAGCGC | + |
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Preference number: 4 (lower is better) Translates to: EADTTRKAIEPQGGPFRVLAIIL*LKIIKR Trigger: GCGCTTTATGATTTTGAGCCAGAGAATGATGGCGAG...GACTCGGAAAGGCCCACCCTGAGGTTCTATTGCCTTCCTGGTGGTATCAGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR GCA 90 bp | ACACATTTGTGCCTTGTGCACTTCTTCATGAGCAGCAGGTGCCAGGTGTCTCTGAATTTCTTCAGGTGGTaGTGGATCTCCTTCAGATCC | + |
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Preference number: 4 (lower is better) Translates to: THLCLVHFFMSSRCQVSLNFFRW*WISFRS Trigger: GGATCTGAAGGAGATCCAGCACCACCTGAAGAAATT...CAGAGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR CCA 90 bp | TGGGAAGGGTTGAAACAGCTGGAAGCTGATACCACCAGGAAGGCAATAGAACCTTCCAATTTCTTCAGGTaGTGCTGGATCTCCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: WEGLKQLEADTTRKAIEPSNFFR*CWISFR Trigger: TCTGAAGGAGATCCAGCACCACCTGAAGAAATTGGA...AGGTTCTATTGCCTTCCTGGTGGTATCAGCTTCCAGCTGTTTCAACCCTTCCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS-3UTR CAA 90 bp | CTGCCTCTAGAGAGCCTGGAGAGGGGGCATGGGCCCATCGCCAGCAACGGGCTGAGGCTGCGCTTCAGCTaGTCAGCCAGCTCCTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: LPLESLERGHGPIASNGLRLRFS*SASSSR Trigger: CCTGGAGGAGCTGGCTGACAAGCTGAAGCGCAGCCT...CAGCCCGTTGCTGGCGATGGGCCCATGCCCCCTCTCCAGGCTCTCTAGAGGCAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233803.2 |
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| CDS-3UTR CAA 90 bp | CAGGTGTCTCTGTGTGCTGAGCTGGGGAGCTGGCCAGCCTCTGCTTGCAGGCTGAGGGGTGGCATGCTCTaGCTGGGCATCCTGATGGGC | + |
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Preference number: 5 (lower is better) Translates to: QVSLCAELGSWPASACRLRGGML*LGILMG Trigger: GCCCATCAGGATGCCCAGCAAGAGCATGCCACCCCT...CAGCCTGCAAGCAGAGGCTGGCCAGCTCCCCAGCTCAGCACACAGAGACACCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR CAA 90 bp | TGGGGAGCTGGCCAGCCTCTGCTTGCAGGCTGGGGATTCCAAGGACCTGCCTGCTTCAGCATAGTCAGCTaGGCTCTCGAGGCTGGGTTA | + |
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Preference number: 5 (lower is better) Translates to: WGAGQPLLAGWGFQGPACFSIVS*ALEAGL Trigger: TAACCCAGCCTCGAGAGCCAAGCTGACTATGCTGAA...GCAGGCAGGTCCTTGGAATCCCCAGCCTGCAAGCAGAGGCTGGCCAGCTCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR CAA 90 bp | AGGGACCTGGGAATGTCCACTCTTCAAGGCCTTTGTGCTTGGTCTTCAACAGAGACCCTGCGCTTCAGCTaGTCAGCCAGCTCCTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: RDLGMSTLQGLCAWSSTETLRFS*SASSSR Trigger: CCTGGAGGAGCTGGCTGACAAGCTGAAGCGCAGGGT...CTCTGTTGAAGACCAAGCACAAAGGCCTTGAAGAGTGGACATTCCCAGGTCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR CAA 90 bp | ACACATTTGTGCCTTGTGCACTTCTTCATGAGCAGCAGGTGCCAGGTGTCTCTGCAGGGGAATCCCCCATaGGGCTGCTCCAGCTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: THLCLVHFFMSSRCQVSLQGNPP*GCSSSP Trigger: TGGAGAGCTGGAGCAGCCCAATGGGGGATTCCCCTG...CAGAGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR CAA 90 bp | ACATTTGTGCCTTGTGCACTTCTTCATGAGCAGCAGGTGCCAGGTGTCTCTGTGAAAGCGCCTTGCAGCTaGGCTGGTCCAGGGGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: TFVPCALLHEQQVPGVSVKAPCS*AGPGVA Trigger: TGCCACCCCTGGACCAGCCAAGCTGCAAGGCGCTTT...CACAGAGACACCTGGCACCTGCTGCTCATGAAGAAGTGCACAAGGCACAAATGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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| CDS-3UTR CAA 90 bp | CACCTTGGCATTAGACTGCTGCTGCACTGTGACTGGCAGCGGTGTAAAGGCCCATTCAGCATAGTCAGCTaGGCTCTCGAGGCTGGGTTA | + |
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Preference number: 5 (lower is better) Translates to: HLGIRLLLHCDWQRCKGPFSIVS*ALEAGL Trigger: TAACCCAGCCTCGAGAGCCAAGCTGACTATGCTGAA...TGGGCCTTTACACCGCTGCCAGTCACAGTGCAGCAGCAGTCTAATGCCAAGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS GCA 72 bp | TGGACTCTCCACCTAGTTCCTTGCCATGGCGAACCATaGACTCTCCCAACAGACCCTCTGACTGTGGGTAGC | + |
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Preference number: 6 (lower is better) Translates to: WTLHLVPCHGEP*TLPTDPLTVGS Trigger: GCTACCCACAGTCAGAGGGTCTGTTGGGAGAGTGCATGGTTCGCCATGGCAAGGAACTAGGTGGAGAGTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003268.11 ENSMUST00000233803.2 |
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| CDS CAA 72 bp | AGGGGTGGCATGCTCTTGCTGGGCATCCTGATGGGCTaGTCTGACGATCTAAATGATGAGGAGGCTGTGATC | + |
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Preference number: 6 (lower is better) Translates to: RGGMLLLGILMG*SDDLNDEEAVI Trigger: GATCACAGCCTCCTCATCATTTAGATCGTCAGACAAGCCCATCAGGATGCCCAGCAAGAGCATGCCACCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003268.11 |
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