Pregenerated sensors for SH3BGRL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028843Ensembl transcript IDs: ENSMUST00000030651.9, ENSMUST00000105879.2
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAATGTTGCCTCTGGAGGAAGAGGAGGCGGCTGCGGAAAGGGTCTaGGTCTGGGTTTGCAGATTAGGACGACAAGGAGTTGGTTACAAG | + |
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Preference number: 1 (lower is better) Translates to: GMLPLEEEEAAAERV*VWVCRLGRQGVGYK Trigger: CTTGTAACCAACTCCTTGTCGTCCTAATCTGCAAACCCAGACCCAGACCCTTTCCGCAGCCGCCTCCTCTTCCTCCAGAGGCAACATTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGAGGATGCCCCAAGGTGTGGCTGGGGACAGCCATCGTCAGGGCTTAAGACAGGTTACAAGGCCTGGTaGAGAGCTAGCTGGATAGGA | + |
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Preference number: 2 (lower is better) Translates to: REDAPRCGWGQPSSGLKTGYKAW*RASWIG Trigger: TCCTATCCAGCTAGCTCTTCACCAGGCCTTGTAACC...TGTCTTAAGCCCTGACGATGGCTGTCCCCAGCCACACCTTGGGGCATCCTCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| 3UTR-3UTR CCA 90 bp | AGGATGCCCCAAGGTGTGGCTGGGGACAGCCATCGTCAGGGCTTAAGACAATCTAAGGAATGTTGCCTCTaGAGGAAGAGGAGGCGGCTG | + |
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Preference number: 2 (lower is better) Translates to: RMPQGVAGDSHRQGLRQSKECCL*RKRRRL Trigger: CAGCCGCCTCCTCTTCCTCCAGAGGCAACATTCCTT...AGATTGTCTTAAGCCCTGACGATGGCTGTCCCCAGCCACACCTTGGGGCATCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| 3UTR-3UTR TCA 90 bp | CAACAGAAATGCTCATCAGACAGGGCCAGGCAGAGAGGATGCCCCAAGGTGTGGGGTTACAAGGCCTGGTaGAGAGCTAGCTGGATAGGA | + |
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Preference number: 2 (lower is better) Translates to: QQKCSSDRARQRGCPKVWGYKAW*RASWIG Trigger: TCCTATCCAGCTAGCTCTTCACCAGGCCTTGTAACC...CCACACCTTGGGGCATCCTCTCTGCCTGGCCCTGTCTGATGAGCATTTCTGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| 3UTR-3UTR CCA 90 bp | AGGATGCCCCAAGGTGTGGCTGGGGACAGCCATCGTCAGGGCTTAAGACAATCTGCTGCGGAAAGGGTCTaGGTCTGGGTTTGCAGATTA | + |
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Preference number: 2 (lower is better) Translates to: RMPQGVAGDSHRQGLRQSAAERV*VWVCRL Trigger: TAATCTGCAAACCCAGACCCAGACCCTTTCCGCAGC...AGATTGTCTTAAGCCCTGACGATGGCTGTCCCCAGCCACACCTTGGGGCATCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| 3UTR-3UTR GCA 90 bp | AACAGAAATGCTCATCAGACAGGGCCAGGCAGAGAGGATGCCCCAAGGTGTGGCGTCTGGGTCTGGGTTTaGAGATTAGGACGACAAGGA | + |
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Preference number: 2 (lower is better) Translates to: NRNAHQTGPGREDAPRCGVWVWV*RLGRQG Trigger: TCCTTGTCGTCCTAATCTGCAAACCCAGACCCAGAC...GCCACACCTTGGGGCATCCTCTCTGCCTGGCCCTGTCTGATGAGCATTTCTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| 3UTR-3UTR TCA 90 bp | ACAGAAATGCTCATCAGACAGGGCCAGGCAGAGAGGATGCCCCAAGGTGTGGCTTTTGAGACTAGTTGGTaGATAAGGAATGTTGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: TEMLIRQGQAERMPQGVAFETSW*IRNVAS Trigger: AGAGGCAACATTCCTTATTCACCAACTAGTCTCAAA...AGCCACACCTTGGGGCATCCTCTCTGCCTGGCCCTGTCTGATGAGCATTTCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| 3UTR-3UTR TCA 90 bp | CAACAGAAATGCTCATCAGACAGGGCCAGGCAGAGAGGATGCCCCAAGGTGTGGTTTGAGACTAGTTGGTaGATAAGGAATGTTGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: QQKCSSDRARQRGCPKVWFETSW*IRNVAS Trigger: AGAGGCAACATTCCTTATTCACCAACTAGTCTCAAA...CCACACCTTGGGGCATCCTCTCTGCCTGGCCCTGTCTGATGAGCATTTCTGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| 3UTR CCA 72 bp | ACAGGGCCAGGCAGAGAGGATGCCCCAAGGTGTGGCTaGGGACAGCCATCGTCAGGGCTTAAGACAATCTTT | + |
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Preference number: 3 (lower is better) Translates to: TGPGREDAPRCG*GQPSSGLKTIF Trigger: AAAGATTGTCTTAAGCCCTGACGATGGCTGTCCCCAGCCACACCTTGGGGCATCCTCTCTGCCTGGCCCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| 3UTR TCA 72 bp | AGATTAGGACGACAAGGAGTTGGTTACAAGGCCTGGTaGAGAGCTAGCTGGATAGGATCGGTGGCCATCCTG | + |
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Preference number: 3 (lower is better) Translates to: RLGRQGVGYKAW*RASWIGSVAIL Trigger: CAGGATGGCCACCGATCCTATCCAGCTAGCTCTTCACCAGGCCTTGTAACCAACTCCTTGTCGTCCTAATCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| CDS-3UTR TCA 90 bp | AACAGAAATGCTCATCAGACAGGGCCAGGCAGAGAGGATGCCCCAAGGTGTGGCTTTCTCGGGAGCCGGTaGCCGACGTGCTGTAGACGC | + |
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Preference number: 4 (lower is better) Translates to: NRNAHQTGPGREDAPRCGFLGSR*PTCCRR Trigger: GCGTCTACAGCACGTCGGTCACCGGCTCCCGAGAAA...GCCACACCTTGGGGCATCCTCTCTGCCTGGCCCTGTCTGATGAGCATTTCTGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030651.9 |
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| CDS-3UTR GCA 90 bp | AGAGAGGATGCCCCAAGGTGTGGCTGGGGACAGCCATCGTCAGGGCTTAAGACATCCTGCAGTGTGTCCTaGTCCACGGCCTCCACGAAG | + |
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Preference number: 4 (lower is better) Translates to: REDAPRCGWGQPSSGLKTSCSVS*STASTK Trigger: CTTCGTGGAGGCCGTGGAGCAGGACACACTGCAGGA...TGTCTTAAGCCCTGACGATGGCTGTCCCCAGCCACACCTTGGGGCATCCTCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| CDS-3UTR GCA 90 bp | AACAGAAATGCTCATCAGACAGGGCCAGGCAGAGAGGATGCCCCAAGGTGTGGCTCCTGCAGTGTGTCCTaGTCCACGGCCTCCACGAAG | + |
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Preference number: 4 (lower is better) Translates to: NRNAHQTGPGREDAPRCGSCSVS*STASTK Trigger: CTTCGTGGAGGCCGTGGAGCAGGACACACTGCAGGA...GCCACACCTTGGGGCATCCTCTCTGCCTGGCCCTGTCTGATGAGCATTTCTGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| CDS-3UTR TCA 90 bp | TGCGGAAAGGGTCTGGGTCTGGGTTTGCAGATTAGGACGACAAGGAGTTGGTTACTTCTCGGGAGCCGGTaGCCGACGTGCTGTAGACGC | + |
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Preference number: 4 (lower is better) Translates to: CGKGLGLGLQIRTTRSWLLLGSR*PTCCRR Trigger: GCGTCTACAGCACGTCGGTCACCGGCTCCCGAGAAG...TAACCAACTCCTTGTCGTCCTAATCTGCAAACCCAGACCCAGACCCTTTCCGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105879.2 |
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| CDS-3UTR TCA 90 bp | AGGATGCCCCAAGGTGTGGCTGGGGACAGCCATCGTCAGGGCTTAAGACAATCTTTCCCGTTGACAATCTaGGGTGGGGTAGCTTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: RMPQGVAGDSHRQGLRQSFPLTI*GGVALG Trigger: CCCCAAAGCTACCCCACCTCAGATTGTCAACGGGAA...AGATTGTCTTAAGCCCTGACGATGGCTGTCCCCAGCCACACCTTGGGGCATCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030651.9 |
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| CDS-3UTR CCA 90 bp | AGAAATGCTCATCAGACAGGGCCAGGCAGAGAGGATGCCCCAAGGTGTGGCTGGGTCACCTCACTCTGCTaGGACTTGATTTCTCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: RNAHQTGPGREDAPRCGWVTSLC*DLISRE Trigger: CTCCCGAGAAATCAAGTCCCAGCAGAGTGAGGTGAC...CCAGCCACACCTTGGGGCATCCTCTCTGCCTGGCCCTGTCTGATGAGCATTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030651.9 |
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| CDS-3UTR CCA 90 bp | AGAAATGCTCATCAGACAGGGCCAGGCAGAGAGGATGCCCCAAGGTGTGGCTGGGTTGACAATCTGAGGTaGGGTAGCTTTGGGGTTGCC | + |
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Preference number: 4 (lower is better) Translates to: RNAHQTGPGREDAPRCGWVDNLR*GSFGVA Trigger: GGCAACCCCAAAGCTACCCCACCTCAGATTGTCAAC...CCAGCCACACCTTGGGGCATCCTCTCTGCCTGGCCCTGTCTGATGAGCATTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030651.9 |
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| 3UTR CAA 72 bp | AGAGGAGGCGGCTGCGGAAAGGGTCTGGGTCTGGGTTaGCAGATTAGGACGACAAGGAGTTGGTTACAAGGC | + |
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Preference number: 4 (lower is better) Translates to: RGGGCGKGLGLG*QIRTTRSWLQG Trigger: GCCTTGTAACCAACTCCTTGTCGTCCTAATCTGCAAACCCAGACCCAGACCCTTTCCGCAGCCGCCTCCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| CDS-3UTR GCA 90 bp | CTGATGGAAGCAACAGAAATGCTCATCAGACAGGGCCAGGCAGAGAGGATGCCCAGCTTCAGGAACTCCTaGAGTGTGTCCTGCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: LMEATEMLIRQGQAERMPSFRNS*SVSCST Trigger: CGTGGAGCAGGACACACTGCAGGAGTTCCTGAAGCT...GGGCATCCTCTCTGCCTGGCCCTGTCTGATGAGCATTTCTGTTGCTTCCATCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| CDS-3UTR GCA 90 bp | TGCGGAAAGGGTCTGGGTCTGGGTTTGCAGATTAGGACGACAAGGAGTTGGTTAAGCTTCAGGAACTCCTaGAGTGTGTCCTGCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: CGKGLGLGLQIRTTRSWLSFRNS*SVSCST Trigger: CGTGGAGCAGGACACACTGCAGGAGTTCCTGAAGCT...TAACCAACTCCTTGTCGTCCTAATCTGCAAACCCAGACCCAGACCCTTTCCGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030651.9 ENSMUST00000105879.2 |
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| CDS-3UTR GCA 90 bp | TGCGGAAAGGGTCTGGGTCTGGGTTTGCAGATTAGGACGACAAGGAGTTGGTTATCTTCCCATCTAGGATaGGGGTCACCTCACTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: CGKGLGLGLQIRTTRSWLSSHLG*GSPHSA Trigger: AGCAGAGTGAGGTGACCCGCATCCTAGATGGGAAGA...TAACCAACTCCTTGTCGTCCTAATCTGCAAACCCAGACCCAGACCCTTTCCGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030651.9 |
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| CDS-3UTR CAA 90 bp | GGCGGCTGCGGAAAGGGTCTGGGTCTGGGTTTGCAGATTAGGACGACAAGGAGTTCACTCTGCTGGGACTaGATTTCTCGGGAGCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: GGCGKGLGLGLQIRTTRSSLCWD*ISREPV Trigger: CACCGGCTCCCGAGAAATCAAGTCCCAGCAGAGTGA...ACTCCTTGTCGTCCTAATCTGCAAACCCAGACCCAGACCCTTTCCGCAGCCGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030651.9 |
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| CDS-3UTR CAA 90 bp | CAACAGAAATGCTCATCAGACAGGGCCAGGCAGAGAGGATGCCCCAAGGTGTGGGGGGTAGCTTTGGGGTaGCCAGCCAAGGTTCGCATC | + |
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Preference number: 5 (lower is better) Translates to: QQKCSSDRARQRGCPKVWGVALG*PAKVRI Trigger: GATGCGAACCTTGGCTGGCAACCCCAAAGCTACCCC...CCACACCTTGGGGCATCCTCTCTGCCTGGCCCTGTCTGATGAGCATTTCTGTTG 59% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000030651.9 |
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| CDS CCA 72 bp | GTCCCCACAGTAGTGGTTCCCGTTGACAATCTGAGGTaGGGTAGCTTTGGGGTTGCCAGCCAAGGTTCGCAT | + |
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Preference number: 6 (lower is better) Translates to: VPTVVVPVDNLR*GSFGVASQGSH Trigger: ATGCGAACCTTGGCTGGCAACCCCAAAGCTACCCCACCTCAGATTGTCAACGGGAACCACTACTGTGGGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030651.9 |
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