RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SH3BGRL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032261

Ensembl transcript IDs: ENSMUST00000113215.10, ENSMUST00000188030.2, ENSMUST00000188241.7

Found 203 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGGACAAGGTCACTGTACCCTGGGGCTCCCTGATTCAGCTAGACTaGCTGACCAGCAAGCCCAGGGGCCCTCCTGGCCCTGTCTTGTCA +
Preference number: 1 (lower is better)
Translates to: RDKVTVPWGSLIQLD*LTSKPRGPPGPVLS
Trigger: TGACAAGACAGGGCCAGGAGGGCCCCTGGGCTTGCTGGTCAGCCAGTCTAGCTGAATCAGGGAGCCCCAGGGTACAGTGACCTTGTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR GCA 90 bp ATATTCAACAGGGAGAAAGAGAAGGTCAGGGAAGCGCACATGGGGTaGCTAGGGAGAAAGGCAGCATGGCAGGCTGGAGGCATATGGGGG +
Preference number: 1 (lower is better)
Translates to: IFNREKEKVREAHMG*LGRKAAWQAGGIWG
Trigger: CCCCCATATGCCTCCAGCCTGCCATGCTGCCTTTCTCCCTAGGCACCCCATGTGCGCTTCCCTGACCTTCTCTTTCTCCCTGTTGAATAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 90 bp AGTGTTCACCCAGAGGGAGCAGGGACTTTGCTTCTTAAGAACCATTaGGGACCATGCTCTAGACAGCCCCTTCCTGTCTGGGCTGCTCTG +
Preference number: 1 (lower is better)
Translates to: SVHPEGAGTLLLKNH*GPCSRQPLPVWAAL
Trigger: CAGAGCAGCCCAGACAGGAAGGGGCTGTCTAGAGCATGGTCCTCAATGGTTCTTAAGAAGCAAAGTCCCTGCTCCCTCTGGGTGAACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 90 bp GCCATCGTGGTGTCTCTTTTTCCTTCCCAGTATGCTGGAGCTGAATaGAGAACCTGTGTGTGCTATGCAAATGTCCTCGCAGGGCTGGCG +
Preference number: 1 (lower is better)
Translates to: AIVVSLFPSQYAGAE*RTCVCYANVLAGLA
Trigger: CGCCAGCCCTGCGAGGACATTTGCATAGCACACACAGGTTCTGCATTCAGCTCCAGCATACTGGGAAGGAAAAAGAGACACCACGATGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 90 bp ACATTCCACCTCATTTTTGAGATAAGGGACAAGGTCACTGTACCCTaGGGCTCCCTGATTCAGCTAGACTGGCTGACCAGCAAGCCCAGG +
Preference number: 1 (lower is better)
Translates to: TFHLIFEIRDKVTVP*GSLIQLDWLTSKPR
Trigger: CCTGGGCTTGCTGGTCAGCCAGTCTAGCTGAATCAGGGAGCCCCAGGGTACAGTGACCTTGTCCCTTATCTCAAAAATGAGGTGGAATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR GCA 90 bp CTTTTTCCTTCCCAGTATGCTGGAGCTGAATGCAGAACCTGTGTGTaGTATGCAAATGTCCTCGCAGGGCTGGCGCCAACGGTTCACAAA +
Preference number: 1 (lower is better)
Translates to: LFPSQYAGAECRTCV*YANVLAGLAPTVHK
Trigger: TTTGTGAACCGTTGGCGCCAGCCCTGCGAGGACATTTGCATAGCACACACAGGTTCTGCATTCAGCTCCAGCATACTGGGAAGGAAAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 90 bp GAGACAAAGGTGCGTGACATGGGAAGTGACACTAGGCAGCCATCGTaGTGTCTCTTTTTCCTTCCCAGTATGCTGGAGCTGAATGCAGAA +
Preference number: 1 (lower is better)
Translates to: ETKVRDMGSDTRQPS*CLFFLPSMLELNAE
Trigger: TTCTGCATTCAGCTCCAGCATACTGGGAAGGAAAAAGAGACACCACGATGGCTGCCTAGTGTCACTTCCCATGTCACGCACCTTTGTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 90 bp AAGGTCAGGGAAGCGCACATGGGGTGCCTAGGGAGAAAGGCAGCATaGCAGGCTGGAGGCATATGGGGGCTATTATTATTACTCTTTAAA +
Preference number: 1 (lower is better)
Translates to: KVREAHMGCLGRKAA*QAGGIWGLLLLLFK
Trigger: TTTAAAGAGTAATAATAATAGCCCCCATATGCCTCCAGCCTGCCATGCTGCCTTTCTCCCTAGGCACCCCATGTGCGCTTCCCTGACCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 90 bp CCTGGAGAATTTATAGGGGTGAGGGTTTCCATCACAGAACGGAGCTaGGAGCATCCAGCTCTTCCAGCAGGCGTTATTACAAAGTACCAG +
Preference number: 1 (lower is better)
Translates to: PGEFIGVRVSITERS*EHPALPAGVITKYQ
Trigger: CTGGTACTTTGTAATAACGCCTGCTGGAAGAGCTGGATGCTCTCAGCTCCGTTCTGTGATGGAAACCCTCACCCCTATAAATTCTCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 90 bp ATACTTCCTTTGTCCACAAGCAGGCAGGAAGTCGACACTATGGCCTaGAAGCTGCTGGCATTACAGCCAAGTCTGCACTTCTTTCCTAGG +
Preference number: 1 (lower is better)
Translates to: ILPLSTSRQEVDTMA*KLLALQPSLHFFPR
Trigger: CCTAGGAAAGAAGTGCAGACTTGGCTGTAATGCCAGCAGCTTTCAGGCCATAGTGTCGACTTCCTGCCTGCTTGTGGACAAAGGAAGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 90 bp TTTTGTGAGCGGTCATATTTCTGCCATCTTAGAGCTTGTTGTGTCTaGGCCCTCCCACACCCTCCATCTGTCTTGGCCTTTGAGTTCTGC +
Preference number: 1 (lower is better)
Translates to: FCERSYFCHLRACCV*ALPHPPSVLAFEFC
Trigger: GCAGAACTCAAAGGCCAAGACAGATGGAGGGTGTGGGAGGGCTCAGACACAACAAGCTCTAAGATGGCAGAAATATGACCGCTCACAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 90 bp CTTTGTCCACAAGCAGGCAGGAAGTCGACACTATGGCCTGAAAGCTaGTGGCATTACAGCCAAGTCTGCACTTCTTTCCTAGGCTTTAGA +
Preference number: 1 (lower is better)
Translates to: LCPQAGRKSTLWPES*WHYSQVCTSFLGFR
Trigger: TCTAAAGCCTAGGAAAGAAGTGCAGACTTGGCTGTAATGCCAGCAGCTTTCAGGCCATAGTGTCGACTTCCTGCCTGCTTGTGGACAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 90 bp AGTGCGTCCAGACAAAACCACATGCATTCTTCTCATGTGTCACTGTaGGAGCTCTGTAGCAACTCACTAACCCTTTCACGGATGGGAGCA +
Preference number: 1 (lower is better)
Translates to: SASRQNHMHSSHVSL*ELCSNSLTLSRMGA
Trigger: TGCTCCCATCCGTGAAAGGGTTAGTGAGTTGCTACAGAGCTCCCACAGTGACACATGAGAAGAATGCATGTGGTTTTGTCTGGACGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 90 bp TCCCATGTCCTCCAAAGACACCTTCTCCAGGTCAGACGAAGTTACTaGTTGTGTGTGTGGCTTTGTCACAGTGATGCATCAGGTAAGCAG +
Preference number: 1 (lower is better)
Translates to: SHVLQRHLLQVRRSY*LCVWLCHSDASGKQ
Trigger: CTGCTTACCTGATGCATCACTGTGACAAAGCCACACACACAATCAGTAACTTCGTCTGACCTGGAGAAGGTGTCTTTGGAGGACATGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 90 bp TTGGTGAGTTCAGCCTTAGCCCTCGCCTTCAGAAATGTTTTCTTCTaGTTCCAAATGTGGATCACAGGAAGCCCAAGTGAGAGGAGTTGT +
Preference number: 1 (lower is better)
Translates to: LVSSALALAFRNVFF*FQMWITGSPSERSC
Trigger: ACAACTCCTCTCACTTGGGCTTCCTGTGATCCACATTTGGAAGCAGAAGAAAACATTTCTGAAGGCGAGGGCTAAGGCTGAACTCACCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 90 bp AGTTCCAAATTGCTATTAGGCAAGTCAAAGACCAATTCCTTCATCTaGCTTTGCCTCCCCAGGCCAGAGAGTTTGAGGAAAAGAGCTGCC +
Preference number: 1 (lower is better)
Translates to: SSKLLLGKSKTNSFI*LCLPRPESLRKRAA
Trigger: GGCAGCTCTTTTCCTCAAACTCTCTGGCCTGGGGAGGCAAAGGCAGATGAAGGAATTGGTCTTTGACTTGCCTAATAGCAATTTGGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR TCA 90 bp CAGTCATTAAGGAAGTTGACCTATCACGGGGAGAGTACTTTCAGGTaGGTGAGGCAACTGCAGACGAATCAGAAAATAAGAGGATCCACC +
Preference number: 1 (lower is better)
Translates to: QSLRKLTYHGESTFR*VRQLQTNQKIRGST
Trigger: GGTGGATCCTCTTATTTTCTGATTCGTCTGCAGTTGCCTCACTCACCTGAAAGTACTCTCCCCGTGATAGGTCAACTTCCTTAATGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 90 bp CAGAGTCAATGTCAGTCGGCACTGCTTTCTTCTTTTGGATTCAATTaGCGTTACCATCCTGGCAAAATGGTTTCAAGGATGGGACGCAGG +
Preference number: 1 (lower is better)
Translates to: QSQCQSALLSSFGFN*RYHPGKMVSRMGRR
Trigger: CCTGCGTCCCATCCTTGAAACCATTTTGCCAGGATGGTAACGTCAATTGAATCCAAAAGAAGAAAGCAGTGCCGACTGACATTGACTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 90 bp GGCCAGTTTCTAATAAAACATAGGGCAGGTTCAACGTTTTCTCCCTaGTGGTGTCGCCCAATTACCTGTCAGTCATTAAGGAAGTTGACC +
Preference number: 1 (lower is better)
Translates to: GQFLIKHRAGSTFSP*WCRPITCQSLRKLT
Trigger: GGTCAACTTCCTTAATGACTGACAGGTAATTGGGCGACACCATCAGGGAGAAAACGTTGAACCTGCCCTATGTTTTATTAGAAACTGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 90 bp TTGGCTGACTCCCCAGTGCTCCCTAGAAGAACCATGGCAAGGAAATaGTGTGAAACTATGATAGTGATGCTAAGAACACCATCTATTCGG +
Preference number: 1 (lower is better)
Translates to: LADSPVLPRRTMARK*CETMIVMLRTPSIR
Trigger: CCGAATAGATGGTGTTCTTAGCATCACTATCATAGTTTCACATCATTTCCTTGCCATGGTTCTTCTAGGGAGCACTGGGGAGTCAGCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 90 bp TTCAGTAAGTATGTGATCCTAGCATTTGGGAGGCAGAAGCAGAAGTaGGTCCTGGGTCTCCGTAGCAAGACTGTCTCAAACAACAACAAA +
Preference number: 1 (lower is better)
Translates to: FSKYVILAFGRQKQK*VLGLRSKTVSNNNK
Trigger: TTTGTTGTTGTTTGAGACAGTCTTGCTACGGAGACCCAGGACTCACTTCTGCTTCTGCCTCCCAAATGCTAGGATCACATACTTACTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 90 bp TCCTGGCCCTGTCTTGTCAGGAGTGAGATTACAATGTGTATTGCATaGTTAGCTTTTTACATGACACTGGGAACCCAAACCCAAGTCTTC +
Preference number: 1 (lower is better)
Translates to: SWPCLVRSEITMCIA*LAFYMTLGTQTQVF
Trigger: GAAGACTTGGGTTTGGGTTCCCAGTGTCATGTAAAAAGCTAAGCATGCAATACACATTGTAATCTCACTCCTGACAAGACAGGGCCAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR TCA 90 bp AATTTGATGTCAGGTGTTCTCCTCAATTACATTCCACCTCATTTTTaGGATAAGGGACAAGGTCACTGTACCCTGGGGCTCCCTGATTCA +
Preference number: 1 (lower is better)
Translates to: NLMSGVLLNYIPPHF*DKGQGHCTLGLPDS
Trigger: TGAATCAGGGAGCCCCAGGGTACAGTGACCTTGTCCCTTATCTCAAAAATGAGGTGGAATGTAATTGAGGAGAACACCTGACATCAAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR GCA 90 bp CTCAAACATTTCCTTTTCAGAATCAGAGTGAAAGGCCTAGCATCGTaGAGGCTAGGTGGAGATTTCAGTCAGCCCTTTATCCTATTCAAG +
Preference number: 1 (lower is better)
Translates to: LKHFLFRIRVKGLAS*RLGGDFSQPFILFK
Trigger: CTTGAATAGGATAAAGGGCTGACTGAAATCTCCACCTAGCCTGCACGATGCTAGGCCTTTCACTCTGATTCTGAAAAGGAAATGTTTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 90 bp TGCTTTCTTCTTTTGGATTCAATTGACGTTACCATCCTGGCAAAATaGTTTCAAGGATGGGACGCAGGCAGCTTAGAGAGGAATGGGTTT +
Preference number: 1 (lower is better)
Translates to: CFLLLDSIDVTILAK*FQGWDAGSLERNGF
Trigger: AAACCCATTCCTCTCTAAGCTGCCTGCGTCCCATCCTTGAAACCATTTTGCCAGGATGGTAACGTCAATTGAATCCAAAAGAAGAAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 90 bp CAAGAACCCTCAGAGTCAATGTCAGTCGGCACTGCTTTCTTCTTTTaGATTCAATTGACGTTACCATCCTGGCAAAATGGTTTCAAGGAT +
Preference number: 1 (lower is better)
Translates to: QEPSESMSVGTAFFF*IQLTLPSWQNGFKD
Trigger: ATCCTTGAAACCATTTTGCCAGGATGGTAACGTCAATTGAATCCAAAAGAAGAAAGCAGTGCCGACTGACATTGACTCTGAGGGTTCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 90 bp AGTAATGAATTTGTCTGGGTCAGCTCTCACAAAAGAGTACTAATTTaGGGTGTCCTTCTCTTCACAGTGATCTCTCTCTTCATCCCTCCT +
Preference number: 1 (lower is better)
Translates to: SNEFVWVSSHKRVLI*GVLLFTVISLFIPP
Trigger: AGGAGGGATGAAGAGAGAGATCACTGTGAAGAGAAGGACACCCCAAATTAGTACTCTTTTGTGAGAGCTGACCCAGACAAATTCATTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR TCA 90 bp GTGAGTTTACTGTTTTTCCCAGTTGCTGTGGTATGGGGCAATTTGTaGAGAATGGAAACGTGTATTGTTGTTGATGCTGTTGCTGTTGCT +
Preference number: 1 (lower is better)
Translates to: VSLLFFPVAVVWGNL*RMETCIVVDAVAVA
Trigger: AGCAACAGCAACAGCATCAACAACAATACACGTTTCCATTCTTCACAAATTGCCCCATACCACAGCAACTGGGAAAAACAGTAAACTCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CCA 90 bp AACCTGACAAGCTTTCCCTGGGAAGAAAATTGTGCATCAATCATTTaGTCCATTCATAAAGAAAGGTGTTCGCCTTTCTCCTTGTTGCAA +
Preference number: 1 (lower is better)
Translates to: NLTSFPWEENCASII*SIHKERCSPFSLLQ
Trigger: TTGCAACAAGGAGAAAGGCGAACACCTTTCTTTATGAATGGACCAAATGATTGATGCACAATTTTCTTCCCAGGGAAAGCTTGTCAGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 90 bp ATGAACAATGAGGCAAGACAATGTGAGTTTACTGTTTTTCCCAGTTaGTGTGGTATGGGGCAATTTGTGAAGAATGGAAACGTGTATTGT +
Preference number: 1 (lower is better)
Translates to: MNNEARQCEFTVFPS*CGMGQFVKNGNVYC
Trigger: ACAATACACGTTTCCATTCTTCACAAATTGCCCCATACCACAGCAACTGGGAAAAACAGTAAACTCACATTGTCTTGCCTCATTGTTCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CCA 90 bp ACTGGCAAGAGTAGACTTGATGTAAGTAAACGGCTCAAGGTAACCTaGGTTGATTTCACAAGACAATTTAAAAATCACTCTATTTTAAAG +
Preference number: 1 (lower is better)
Translates to: TGKSRLDVSKRLKVT*VDFTRQFKNHSILK
Trigger: CTTTAAAATAGAGTGATTTTTAAATTGTCTTGTGAAATCAACCCAGGTTACCTTGAGCCGTTTACTTACATCAAGTCTACTCTTGCCAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CAA 90 bp AGGCAGACTGGGAATCATACAAGAGCCAGCATGCTCTACACACACTaGTCCGGGGACTGTGGTCCACTCCATACTGGGCTTCTGGACACT +
Preference number: 2 (lower is better)
Translates to: RQTGNHTRASMLYTH*SGDCGPLHTGLLDT
Trigger: AGTGTCCAGAAGCCCAGTATGGAGTGGACCACAGTCCCCGGACAAGTGTGTGTAGAGCATGCTGGCTCTTGTATGATTCCCAGTCTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR TCA 90 bp GGAGACAAACCGCTAAAGGGCAGGAAGGCTTCGATCCACACACAGGGTGAGGCTGTACTTTCAGGTGAGTaGGGCAACTGCAGACGAATC +
Preference number: 2 (lower is better)
Translates to: GDKPLKGRKASIHTQGEAVLSGE*GNCRRI
Trigger: GATTCGTCTGCAGTTGCCTCACTCACCTGAAAGTAC...AGCCTCACCCTGTGTGTGGATCGAAGCCTTCCTGCCCTTTAGCGGTTTGTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp CCAGGGTTTCTCAACCTGTGGGTTGTGACACCTTTGGGGGTCAAAACACCTTCCCTGATTCAGCTAGACTaGCTGACCAGCAAGCCCAGG +
Preference number: 2 (lower is better)
Translates to: PGFLNLWVVTPLGVKTPSLIQLD*LTSKPR
Trigger: CCTGGGCTTGCTGGTCAGCCAGTCTAGCTGAATCAG...GGAAGGTGTTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGAGAAACCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR TCA 90 bp CCAGGGTTTCTCAACCTGTGGGTTGTGACACCTTTGGGGGTCAAAACACCTTCCTGCAACACAGGCACTTaGCTGATGGCTGTCTCTCTG +
Preference number: 2 (lower is better)
Translates to: PGFLNLWVVTPLGVKTPSCNTGT*LMAVSL
Trigger: CAGAGAGACAGCCATCAGTCAAGTGCCTGTGTTGCA...GGAAGGTGTTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGAGAAACCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR TCA 90 bp CCAGGGTTTCTCAACCTGTGGGTTGTGACACCTTTGGGGGTCAAAACACCTTCCGTAGAAGCCAGAATTTaGTGTCAGGTGTTCTCCTCA +
Preference number: 2 (lower is better)
Translates to: PGFLNLWVVTPLGVKTPSVEARI*CQVFSS
Trigger: TGAGGAGAACACCTGACATCAAATTCTGGCTTCTAC...GGAAGGTGTTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGAGAAACCCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CCA 90 bp CCTCCATCTGTCTTGGCCTTTGAGTTCTGCAACTGTTTCTTGGTGAGTTCAGCCGCACCTGGAGAAGCCTaGAGAATTTATAGGGGTGAG +
Preference number: 2 (lower is better)
Translates to: PPSVLAFEFCNCFLVSSAAPGEA*RIYRGE
Trigger: CTCACCCCTATAAATTCTCCAGGCTTCTCCAGGTGC...GGCTGAACTCACCAAGAAACAGTTGCAGAACTCAAAGGCCAAGACAGATGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp ACTGATCCATCTCCCCCAACTCCAAACCTGGCTTTTGAAACAATCTTAATAAAAGCCCAGGGGCCCTCCTaGCCCTGTCTTGTCAGGAGT +
Preference number: 2 (lower is better)
Translates to: TDPSPPTPNLAFETILIKAQGPS*PCLVRS
Trigger: ACTCCTGACAAGACAGGGCCAGGAGGGCCCCTGGGC...TTTTATTAAGATTGTTTCAAAAGCCAGGTTTGGAGTTGGGGGAGATGGATCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR-3UTR TCA 90 bp CCTCCATCTGTCTTGGCCTTTGAGTTCTGCAACTGTTTCTTGGTGAGTTCAGCCGCAAACTACAAGAGCTaGAAACGCCTTTGCATACTG +
Preference number: 2 (lower is better)
Translates to: PPSVLAFEFCNCFLVSSAANYKS*KRLCIL
Trigger: CAGTATGCAAAGGCGTTTTCAGCTCTTGTAGTTTGC...GGCTGAACTCACCAAGAAACAGTTGCAGAACTCAAAGGCCAAGACAGATGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR GCA 90 bp ACTCAGCTTCCTAGAGCAACAGGAAGGATCCAAGCTAACTCCAGGATAAAAGTTCCTTCCTGTCTGGGCTaGTCTGAAATCTCACACGTG +
Preference number: 2 (lower is better)
Translates to: TQLPRATGRIQANSRIKVPSCLG*SEISHV
Trigger: CACGTGTGAGATTTCAGAGCAGCCCAGACAGGAAGG...AACTTTTATCCTGGAGTTAGCTTGGATCCTTCCTGTTGCTCTAGGAAGCTGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp ACTCAGCTTCCTAGAGCAACAGGAAGGATCCAAGCTAACTCCAGGATAAAAGTTTGGCCTGAAAGCTGCTaGCATTACAGCCAAGTCTGC +
Preference number: 2 (lower is better)
Translates to: TQLPRATGRIQANSRIKVWPESC*HYSQVC
Trigger: GCAGACTTGGCTGTAATGCCAGCAGCTTTCAGGCCA...AACTTTTATCCTGGAGTTAGCTTGGATCCTTCCTGTTGCTCTAGGAAGCTGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACGCCCAGGGGCCCTCCTaGCCCTGTCTTGTCAGGAGT +
Preference number: 2 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNAQGPS*PCLVRS
Trigger: ACTCCTGACAAGACAGGGCCAGGAGGGCCCCTGGGC...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR TCA 90 bp GTGACATGGGAAGTGACACTAGGCAGCCATCGTGGTGTCTCTTTTTCCTTCCCATCTTTTGGATTCAATTaGCGTTACCATCCTGGCAAA +
Preference number: 2 (lower is better)
Translates to: VTWEVTLGSHRGVSFSFPSFGFN*RYHPGK
Trigger: TTTGCCAGGATGGTAACGTCAATTGAATCCAAAAGA...TGGGAAGGAAAAAGAGACACCACGATGGCTGCCTAGTGTCACTTCCCATGTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR TCA 90 bp TGTTATTCTGAAAAGCCTAAGACTGTCAACTGTCAGAGACAAAGGTGCGTGACACCAGTATGCTGGAGCTaGATGCAGAACCTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: CYSEKPKTVNCQRQRCVTPVCWS*MQNLCV
Trigger: CACACACAGGTTCTGCATTCAGCTCCAGCATACTGG...TGTCACGCACCTTTGTCTCTGACAGTTGACAGTCTTAGGCTTTTCAGAATAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR GCA 90 bp CCTTTCTCCTTGTTGCAACAGGACTGCAACAAGCTCTCAGCTTCAGCATTTAAAAGTAACCTCAGTGTTTaGCAGTGTTCACCCAGAGGG +
Preference number: 2 (lower is better)
Translates to: PFSLLQQDCNKLSASAFKSNLSV*QCSPRG
Trigger: CCCTCTGGGTGAACACTGGCAAACACTGAGGTTACT...TTTAAATGCTGAAGCTGAGAGCTTGTTGCAGTCCTGTTGCAACAAGGAGAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp ACAAAGTACCAGAGCAGTGACATTTGTGACTCTCCAACAAGAACCCTCAGAGTCACCATCCTGGCAAAATaGTTTCAAGGATGGGACGCA +
Preference number: 2 (lower is better)
Translates to: TKYQSSDICDSPTRTLRVTILAK*FQGWDA
Trigger: TGCGTCCCATCCTTGAAACCATTTTGCCAGGATGGT...GACTCTGAGGGTTCTTGTTGGAGAGTCACAAATGTCACTGCTCTGGTACTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp CCTCCATCTGTCTTGGCCTTTGAGTTCTGCAACTGTTTCTTGGTGAGTTCAGCCCTGACAAGCTTTCCCTaGGAAGAAAATTGTGCATCA +
Preference number: 2 (lower is better)
Translates to: PPSVLAFEFCNCFLVSSALTSFP*EENCAS
Trigger: TGATGCACAATTTTCTTCCCAGGGAAAGCTTGTCAG...GGCTGAACTCACCAAGAAACAGTTGCAGAACTCAAAGGCCAAGACAGATGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR TCA 90 bp ATTAGTGGAACACCTGATCGAAAGGCATCTCTTTCCCCTGACTTCAAAATGCAATCAACCTGTGGGTTGTaGCACCTTTGGGGGTCAAAA +
Preference number: 2 (lower is better)
Translates to: ISGTPDRKASLSPDFKMQSTCGL*HLWGSK
Trigger: TTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGA...TTGCATTTTGAAGTCAGGGGAAAGAGATGCCTTTCGATCAGGTGTTCCACTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR-3UTR GCA 90 bp TGTTATTCTGAAAAGCCTAAGACTGTCAACTGTCAGAGACAAAGGTGCGTGACAAACCTGTGTGTGCTATaGAAATGTCCTCGCAGGGCT +
Preference number: 2 (lower is better)
Translates to: CYSEKPKTVNCQRQRCVTNLCVL*KCPRRA
Trigger: AGCCCTGCGAGGACATTTGCATAGCACACACAGGTT...TGTCACGCACCTTTGTCTCTGACAGTTGACAGTCTTAGGCTTTTCAGAATAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp CCTCCATCTGTCTTGGCCTTTGAGTTCTGCAACTGTTTCTTGGTGAGTTCAGCCCATTTGATATTGCAATaGAGGTTTTGGAAGCACCTG +
Preference number: 2 (lower is better)
Translates to: PPSVLAFEFCNCFLVSSAHLILQ*RFWKHL
Trigger: CAGGTGCTTCCAAAACCTCCATTGCAATATCAAATG...GGCTGAACTCACCAAGAAACAGTTGCAGAACTCAAAGGCCAAGACAGATGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CAA 90 bp CTGTGGTATGGGGCAATTTGTGAAGAATGGAAACGTGTATTGTTGTaGATGCTGTTGCTGTTGCTATTGTTGATGCTGTTGCTGCTGCTG +
Preference number: 2 (lower is better)
Translates to: LWYGAICEEWKRVLL*MLLLLLLLMLLLLL
Trigger: CAGCAGCAGCAACAGCATCAACAATAGCAACAGCAACAGCATCAACAACAATACACGTTTCCATTCTTCACAAATTGCCCCATACCACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CAA 90 bp CACTGGGAACCCAAACCCAAGTCTTCATGTTTGCAACACAGGCACTaGACTGATGGCTGTCTCTCTGAGCTTCTAATAGCATTTTCAAAT +
Preference number: 2 (lower is better)
Translates to: HWEPKPKSSCLQHRH*TDGCLSELLIAFSN
Trigger: ATTTGAAAATGCTATTAGAAGCTCAGAGAGACAGCCATCAGTCAAGTGCCTGTGTTGCAAACATGAAGACTTGGGTTTGGGTTCCCAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CAA 90 bp AGTGCTTTTCTGAACACAAAACCATCCGCACATGCTCACAAGAGCTaGCTGTGTAGACAGATATCTGCACATACCTATATGGCATGGAGA +
Preference number: 2 (lower is better)
Translates to: SAFLNTKPSAHAHKS*LCRQISAHTYMAWR
Trigger: TCTCCATGCCATATAGGTATGTGCAGATATCTGTCTACACAGCAAGCTCTTGTGAGCATGTGCGGATGGTTTTGTGTTCAGAAAAGCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR TCA 90 bp ACTGATCCATCTCCCCCAACTCCAAACCTGGCTTTTGAAACAATCTTAATAAAACAAGTTGGCAAACTCTaGGGCCAGGGTTTCTCAACC +
Preference number: 2 (lower is better)
Translates to: TDPSPPTPNLAFETILIKQVGKL*GQGFST
Trigger: GGTTGAGAAACCCTGGCCTCAGAGTTTGCCAACTTG...TTTTATTAAGATTGTTTCAAAAGCCAGGTTTGGAGTTGGGGGAGATGGATCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR-3UTR CCA 90 bp TGTTATTCTGAAAAGCCTAAGACTGTCAACTGTCAGAGACAAAGGTGCGTGACATTGCAATGGAGGTTTTaGAAGCACCTGGAGAAGCCT +
Preference number: 2 (lower is better)
Translates to: CYSEKPKTVNCQRQRCVTLQWRF*KHLEKP
Trigger: AGGCTTCTCCAGGTGCTTCCAAAACCTCCATTGCAA...TGTCACGCACCTTTGTCTCTGACAGTTGACAGTCTTAGGCTTTTCAGAATAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR TCA 90 bp TGTTATTCTGAAAAGCCTAAGACTGTCAACTGTCAGAGACAAAGGTGCGTGACAGTCAGACGAAGTTACTaGTTGTGTGTGTGGCTTTGT +
Preference number: 2 (lower is better)
Translates to: CYSEKPKTVNCQRQRCVTVRRSY*LCVWLC
Trigger: ACAAAGCCACACACACAATCAGTAACTTCGTCTGAC...TGTCACGCACCTTTGTCTCTGACAGTTGACAGTCTTAGGCTTTTCAGAATAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR TCA 90 bp ATTAGTGGAACACCTGATCGAAAGGCATCTCTTTCCCCTGACTTCAAAATGCAAGGGGTCACTACAACATaGGGAACTGTATTAAAGGGT +
Preference number: 2 (lower is better)
Translates to: ISGTPDRKASLSPDFKMQGVTTT*GTVLKG
Trigger: ACCCTTTAATACAGTTCCTCATGTTGTAGTGACCCC...TTGCATTTTGAAGTCAGGGGAAAGAGATGCCTTTCGATCAGGTGTTCCACTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR-3UTR TCA 90 bp TTATTTCTATGTGTGAGATTAACTCTAAATATGCCAGGATACAGGAGAGTAACCGAGAGTACTTTCAGGTaGGTGAGGCAACTGCAGACG +
Preference number: 2 (lower is better)
Translates to: LFLCVRLTLNMPGYRRVTESTFR*VRQLQT
Trigger: CGTCTGCAGTTGCCTCACTCACCTGAAAGTACTCTC...GGTTACTCTCCTGTATCCTGGCATATTTAGAGTTAATCTCACACATAGAAATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR TCA 90 bp ATTAGTGGAACACCTGATCGAAAGGCATCTCTTTCCCCTGACTTCAAAATGCAACTGTCTTGTCAGGAGTaGGATTACAATGTGTATTGC +
Preference number: 2 (lower is better)
Translates to: ISGTPDRKASLSPDFKMQLSCQE*DYNVYC
Trigger: GCAATACACATTGTAATCTCACTCCTGACAAGACAG...TTGCATTTTGAAGTCAGGGGAAAGAGATGCCTTTCGATCAGGTGTTCCACTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR-3UTR GCA 90 bp ATGTGTGAGATTAACTCTAAATATGCCAGGATACAGGAGAGTAACCTCAGTGTTTGCAGAACCTGTGTGTaGTATGCAAATGTCCTCGCA +
Preference number: 2 (lower is better)
Translates to: MCEINSKYARIQESNLSVCRTCV*YANVLA
Trigger: TGCGAGGACATTTGCATAGCACACACAGGTTCTGCA...AACACTGAGGTTACTCTCCTGTATCCTGGCATATTTAGAGTTAATCTCACACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR GCA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACACCAATTCCTTCATCTaGCTTTGCCTCCCCAGGCCA +
Preference number: 2 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNTNSFI*LCLPRP
Trigger: TGGCCTGGGGAGGCAAAGGCAGATGAAGGAATTGGT...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CAA 90 bp TTGATGCTGTTGCTGTTGCTATTGTTGATGCTGTTGCTGCTGCTGTaGATGTTGCTGTTGTTGATGCTGTTGCTGTTTCTATTGTTAATG +
Preference number: 2 (lower is better)
Translates to: LMLLLLLLLMLLLLL*MLLLLMLLLFLLLM
Trigger: CATTAACAATAGAAACAGCAACAGCATCAACAACAGCAACATCAACAGCAGCAGCAACAGCATCAACAATAGCAACAGCAACAGCATCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CAA 90 bp ATTTGTGAAGAATGGAAACGTGTATTGTTGTTGATGCTGTTGCTGTaGCTATTGTTGATGCTGTTGCTGCTGCTGTTGATGTTGCTGTTG +
Preference number: 2 (lower is better)
Translates to: ICEEWKRVLLLMLLL*LLLMLLLLLLMLLL
Trigger: CAACAGCAACATCAACAGCAGCAGCAACAGCATCAACAATAGCAACAGCAACAGCATCAACAACAATACACGTTTCCATTCTTCACAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR GCA 90 bp ACTCAGCTTCCTAGAGCAACAGGAAGGATCCAAGCTAACTCCAGGATAAAAGTTCTGGGAAGAAAATTGTaGATCAATCATTTGGTCCAT +
Preference number: 2 (lower is better)
Translates to: TQLPRATGRIQANSRIKVLGRKL*INHLVH
Trigger: ATGGACCAAATGATTGATGCACAATTTTCTTCCCAG...AACTTTTATCCTGGAGTTAGCTTGGATCCTTCCTGTTGCTCTAGGAAGCTGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR GCA 90 bp ACAATGTGTATTGCATGCTTAGCTTTTTACATGACACTGGGAACCCAAACCCAAACTGTTTTTCCCAGTTaGTGTGGTATGGGGCAATTT +
Preference number: 2 (lower is better)
Translates to: TMCIACLAFYMTLGTQTQTVFPS*CGMGQF
Trigger: AAATTGCCCCATACCACAGCAACTGGGAAAAACAGT...TTGGGTTTGGGTTCCCAGTGTCATGTAAAAAGCTAAGCATGCAATACACATTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CCA 90 bp AATAAAGCCCCTGAATTTGGCAAAATATTTCCTGAACTAAACTGTCTTCTGGTTACTAGGCAGCCATCGTaGTGTCTCTTTTTCCTTCCC +
Preference number: 2 (lower is better)
Translates to: NKAPEFGKIFPELNCLLVTRQPS*CLFFLP
Trigger: GGGAAGGAAAAAGAGACACCACGATGGCTGCCTAGT...AACCAGAAGACAGTTTAGTTCAGGAAATATTTTGCCAAATTCAGGGGCTTTATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp ACAATGTGTATTGCATGCTTAGCTTTTTACATGACACTGGGAACCCAAACCCAATTTTCCCAGTTGCTGTaGTATGGGGCAATTTGTGAA +
Preference number: 2 (lower is better)
Translates to: TMCIACLAFYMTLGTQTQFSQLL*YGAICE
Trigger: TTCACAAATTGCCCCATACCACAGCAACTGGGAAAA...TTGGGTTTGGGTTCCCAGTGTCATGTAAAAAGCTAAGCATGCAATACACATTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR GCA 90 bp TATGCATGTAGAAGCCAGAATTTGATGTCAGGTGTTCTCCTCAATTACATTCCAACTGTTTTTCCCAGTTaGTGTGGTATGGGGCAATTT +
Preference number: 2 (lower is better)
Translates to: YACRSQNLMSGVLLNYIPTVFPS*CGMGQF
Trigger: AAATTGCCCCATACCACAGCAACTGGGAAAAACAGT...TGGAATGTAATTGAGGAGAACACCTGACATCAAATTCTGGCTTCTACATGCATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR GCA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACGCTAACCAGAATGCCTaGAGGACAAGTTGGCAAACT +
Preference number: 2 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNANQNA*RTSWQT
Trigger: AGTTTGCCAACTTGTCCTGCAGGCATTCTGGTTAGC...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR GCA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACAAAACCATCCGCACATaGTCACAAGAGCTTGCTGTG +
Preference number: 2 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNKTIRT*SQELAV
Trigger: CACAGCAAGCTCTTGTGAGCATGTGCGGATGGTTTT...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CCA 90 bp GCGTTATTACAAAGTACCAGAGCAGTGACATTTGTGACTCTCCAACAAGAACCCACTGCTTTCTTCTTTTaGATTCAATTGACGTTACCA +
Preference number: 2 (lower is better)
Translates to: ALLQSTRAVTFVTLQQEPTAFFF*IQLTLP
Trigger: TGGTAACGTCAATTGAATCCAAAAGAAGAAAGCAGT...GGGTTCTTGTTGGAGAGTCACAAATGTCACTGCTCTGGTACTTTGTAATAACGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp ACTGATCCATCTCCCCCAACTCCAAACCTGGCTTTTGAAACAATCTTAATAAAAGAGTCTAATGGTCTCTaGTTGACAAGGCTTTATGTG +
Preference number: 2 (lower is better)
Translates to: TDPSPPTPNLAFETILIKESNGL*LTRLYV
Trigger: CACATAAAGCCTTGTCAACCAGAGACCATTAGACTC...TTTTATTAAGATTGTTTCAAAAGCCAGGTTTGGAGTTGGGGGAGATGGATCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR-3UTR TCA 90 bp AATAAAGCCCCTGAATTTGGCAAAATATTTCCTGAACTAAACTGTCTTCTGGTTGTCTTATGCATACAGTaGAACTTCCCCCTTGCAAGA +
Preference number: 2 (lower is better)
Translates to: NKAPEFGKIFPELNCLLVVLCIQ*NFPLAR
Trigger: TCTTGCAAGGGGGAAGTTTCACTGTATGCATAAGAC...AACCAGAAGACAGTTTAGTTCAGGAAATATTTTGCCAAATTCAGGGGCTTTATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp ATTAGTGGAACACCTGATCGAAAGGCATCTCTTTCCCCTGACTTCAAAATGCAAGCAATTTGTGAAGAATaGAAACGTGTATTGTTGTTG +
Preference number: 2 (lower is better)
Translates to: ISGTPDRKASLSPDFKMQAICEE*KRVLLL
Trigger: CAACAACAATACACGTTTCCATTCTTCACAAATTGC...TTGCATTTTGAAGTCAGGGGAAAGAGATGCCTTTCGATCAGGTGTTCCACTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR CAA 90 bp TATGTGCATGTGTGTGTAAGCAAACTACAAGAGCTGAAAACGCCTTaGCATACTGACAGAGCAAACTCTATTAACTTACTATATGTAACC +
Preference number: 2 (lower is better)
Translates to: YVHVCVSKLQELKTP*HTDRANSINLLYVT
Trigger: GGTTACATATAGTAAGTTAATAGAGTTTGCTCTGTCAGTATGCAAAGGCGTTTTCAGCTCTTGTAGTTTGCTTACACACACATGCACATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR TCA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACCTGTCTTGTCAGGAGTaGGATTACAATGTGTATTGC +
Preference number: 2 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNLSCQE*DYNVYC
Trigger: GCAATACACATTGTAATCTCACTCCTGACAAGACAG...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR GCA 90 bp CGGCTCAAGGTAACCTGGGTTGATTTCACAAGACAATTTAAAAATCACTCTATTAATGTCAGTCGGCACTaGTTTCTTCTTTTGGATTCA +
Preference number: 2 (lower is better)
Translates to: RLKVTWVDFTRQFKNHSINVSRH*FLLLDS
Trigger: TGAATCCAAAAGAAGAAAGCAGTGCCGACTGACATT...AATAGAGTGATTTTTAAATTGTCTTGTGAAATCAACCCAGGTTACCTTGAGCCG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR GCA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACATGCTCACAAGAGCTTaGTGTGTAGACAGATATCTG +
Preference number: 2 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNMLTRA*CVDRYL
Trigger: CAGATATCTGTCTACACAGCAAGCTCTTGTGAGCAT...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CCA 90 bp AATAAAGCCCCTGAATTTGGCAAAATATTTCCTGAACTAAACTGTCTTCTGGTTTCCATACTGGGCTTCTaGACACTAAAACAAGTCACT +
Preference number: 2 (lower is better)
Translates to: NKAPEFGKIFPELNCLLVSILGF*TLKQVT
Trigger: AGTGACTTGTTTTAGTGTCCAGAAGCCCAGTATGGA...AACCAGAAGACAGTTTAGTTCAGGAAATATTTTGCCAAATTCAGGGGCTTTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACGAGTCTAATGGTCTCTaGTTGACAAGGCTTTATGTG +
Preference number: 2 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNESNGL*LTRLYV
Trigger: CACATAAAGCCTTGTCAACCAGAGACCATTAGACTC...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR TCA 90 bp AATAAAGCCCCTGAATTTGGCAAAATATTTCCTGAACTAAACTGTCTTCTGGTTCCTGTAACTTGGCTGTaGTCATTTGATATTGCAATG +
Preference number: 2 (lower is better)
Translates to: NKAPEFGKIFPELNCLLVPVTWL*SFDIAM
Trigger: CATTGCAATATCAAATGATCACAGCCAAGTTACAGG...AACCAGAAGACAGTTTAGTTCAGGAAATATTTTGCCAAATTCAGGGGCTTTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp CGGCTCAAGGTAACCTGGGTTGATTTCACAAGACAATTTAAAAATCACTCTATTAAGCAGCTGTTACTTTaGGGAGCTGCATTTAAAAAT +
Preference number: 2 (lower is better)
Translates to: RLKVTWVDFTRQFKNHSIKQLLL*GAAFKN
Trigger: ATTTTTAAATGCAGCTCCCCAAAGTAACAGCTGCTT...AATAGAGTGATTTTTAAATTGTCTTGTGAAATCAACCCAGGTTACCTTGAGCCG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CCA 90 bp CGGCTCAAGGTAACCTGGGTTGATTTCACAAGACAATTTAAAAATCACTCTATTTGTGCATCAATCATTTaGTCCATTCATAAAGAAAGG +
Preference number: 2 (lower is better)
Translates to: RLKVTWVDFTRQFKNHSICASII*SIHKER
Trigger: CCTTTCTTTATGAATGGACCAAATGATTGATGCACA...AATAGAGTGATTTTTAAATTGTCTTGTGAAATCAACCCAGGTTACCTTGAGCCG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp GCTGTACCAGCACTGACACCTTCCCTGGCCCGCCACTaGCTGCGGCTGTCCCTGCTGTGCTCATTTGCTCCC +
Preference number: 3 (lower is better)
Translates to: AVPALTPSLARH*LRLSLLCSFAP
Trigger: GGGAGCAAATGAGCACAGCAGGGACAGCCGCAGTCAGTGGCGGGCCAGGGAAGGTGTCAGTGCTGGTACAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp CCTGCTGGGGAGAAGTCATTGAGGCAGCTCTGCAAATaGGCTGTGCTGCCTGCGTTCCTGGGTCGATGGCCC +
Preference number: 3 (lower is better)
Translates to: PAGEKSLRQLCK*AVLPAFLGRWP
Trigger: GGGCCATCGACCCAGGAACGCAGGCAGCACAGCTCATTTGCAGAGCTGCCTCAATGACTTCTCCCCAGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR GCA 72 bp CCGCCACTGACTGCGGCTGTCCCTGCTGTGCTCATTTaGTCCCCTCATCCTCAGACAGGACCCATCACCTTA +
Preference number: 3 (lower is better)
Translates to: PPLTAAVPAVLI*SPHPQTGPITL
Trigger: TAAGGTGATGGGTCCTGTCTGAGGATGAGGGGAGCAAATGAGCACAGCAGGGACAGCCGCAGTCAGTGGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp GGCAGCTCTGCAAATGAGCTGTGCTGCCTGCGTTCCTaGGTCGATGGCCCAGGAGCTCGAGCAAATGGAAAC +
Preference number: 3 (lower is better)
Translates to: GSSANELCCLRS*VDGPGARANGN
Trigger: GTTTCCATTTGCTCGAGCTCCTGGGCCATCGACCCAGGAACGCAGGCAGCACAGCTCATTTGCAGAGCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CCA 72 bp GCTAGACTGGCTGACCAGCAAGCCCAGGGGCCCTCCTaGCCCTGTCTTGTCAGGAGTGAGATTACAATGTGT +
Preference number: 3 (lower is better)
Translates to: ARLADQQAQGPS*PCLVRSEITMC
Trigger: ACACATTGTAATCTCACTCCTGACAAGACAGGGCCAGGAGGGCCCCTGGGCTTGCTGGTCAGCCAGTCTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR GCA 72 bp TCCCAGTATGCTGGAGCTGAATGCAGAACCTGTGTGTaGTATGCAAATGTCCTCGCAGGGCTGGCGCCAACG +
Preference number: 3 (lower is better)
Translates to: SQYAGAECRTCV*YANVLAGLAPT
Trigger: CGTTGGCGCCAGCCCTGCGAGGACATTTGCATAGCACACACAGGTTCTGCATTCAGCTCCAGCATACTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 72 bp CCTGGGTGGCCAGAGAGGGCTCTGTTCTCCTCCCAGTaGGTCCAGACAAAACCACATGCATTCTTCTCATGT +
Preference number: 3 (lower is better)
Translates to: PGWPERALFSSQ*VQTKPHAFFSC
Trigger: ACATGAGAAGAATGCATGTGGTTTTGTCTGGACGCACTGGGAGGAGAACAGAGCCCTCTCTGGCCACCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp ACCTTTAACCTTTCTGATAATGAGCTGTACCAGCACTaGCACCTTCCCTGGCCCGCCACTGACTGCGGCTGT +
Preference number: 3 (lower is better)
Translates to: TFNLSDNELYQH*HLPWPATDCGC
Trigger: ACAGCCGCAGTCAGTGGCGGGCCAGGGAAGGTGTCAGTGCTGGTACAGCTCATTATCAGAAAGGTTAAAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp GTGCGTGACATGGGAAGTGACACTAGGCAGCCATCGTaGTGTCTCTTTTTCCTTCCCAGTATGCTGGAGCTG +
Preference number: 3 (lower is better)
Translates to: VRDMGSDTRQPS*CLFFLPSMLEL
Trigger: CAGCTCCAGCATACTGGGAAGGAAAAAGAGACACCACGATGGCTGCCTAGTGTCACTTCCCATGTCACGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp CCCTTTGGAATCTGGGTCACACGCAGGCAGGGCTCTTaGCCGATTTGGTTTTGTGAGCGGTCATATTTCTGC +
Preference number: 3 (lower is better)
Translates to: PFGIWVTRRQGS*PIWFCERSYFC
Trigger: GCAGAAATATGACCGCTCACAAAACCAAATCGGCCAAGAGCCCTGCCTGCGTGTGACCCAGATTCCAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CAA 90 bp GGAGACAAACCGCTAAAGGGCAGGAAGGCTTCGATCCACACACAGGGTGAGGCTGGCAGAGAGGGCTGCTaGATGGATCTTTCAATTTCT +
Preference number: 3 (lower is better)
Translates to: GDKPLKGRKASIHTQGEAGREGC*MDLSIS
Trigger: AGAAATTGAAAGATCCATCAAGCAGCCCTCTCTGCC...AGCCTCACCCTGTGTGTGGATCGAAGCCTTCCTGCCCTTTAGCGGTTTGTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp TTGTCCACAAGCAGGCAGGAAGTCGACACTATGGCCTaGAAGCTGCTGGCATTACAGCCAAGTCTGCACTTC +
Preference number: 3 (lower is better)
Translates to: LSTSRQEVDTMA*KLLALQPSLHF
Trigger: GAAGTGCAGACTTGGCTGTAATGCCAGCAGCTTTCAGGCCATAGTGTCGACTTCCTGCCTGCTTGTGGACAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp CTGAGCCCTCCCACACCCTCCATCTGTCTTGGCCTTTaGGTTCTGCAACTGTTTCTTGGTGAGTTCAGCCTT +
Preference number: 3 (lower is better)
Translates to: LSPPTPSICLGL*VLQLFLGEFSL
Trigger: AAGGCTGAACTCACCAAGAAACAGTTGCAGAACTCAAAGGCCAAGACAGATGGAGGGTGTGGGAGGGCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 72 bp CTATGGCCTGAAAGCTGCTGGCATTACAGCCAAGTCTaGACTTCTTTCCTAGGCTTTAGAGATGGCGGCGAG +
Preference number: 3 (lower is better)
Translates to: LWPESCWHYSQV*TSFLGFRDGGE
Trigger: CTCGCCGCCATCTCTAAAGCCTAGGAAAGAAGTGCAGACTTGGCTGTAATGCCAGCAGCTTTCAGGCCATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 72 bp CTCCCACACCCTCCATCTGTCTTGGCCTTTGAGTTCTaGAACTGTTTCTTGGTGAGTTCAGCCTTAGCCCTC +
Preference number: 3 (lower is better)
Translates to: LPHPPSVLAFEF*NCFLVSSALAL
Trigger: GAGGGCTAAGGCTGAACTCACCAAGAAACAGTTGCAGAACTCAAAGGCCAAGACAGATGGAGGGTGTGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp AAAAAGACTGCAGAACAGCCCACCTTTAGCAAAGCTTaGGGTGCAGGTGGCAGAGAGGGCTGCTTGATGGAT +
Preference number: 3 (lower is better)
Translates to: KKTAEQPTFSKA*GAGGREGCLMD
Trigger: ATCCATCAAGCAGCCCTCTCTGCCACCTGCACCCCAAGCTTTGCTAAAGGTGGGCTGTTCTGCAGTCTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp TTCCTTTGTCCACAAGCAGGCAGGAAGTCGACACTATaGCCTGAAAGCTGCTGGCATTACAGCCAAGTCTGC +
Preference number: 3 (lower is better)
Translates to: FLCPQAGRKSTL*PESCWHYSQVC
Trigger: GCAGACTTGGCTGTAATGCCAGCAGCTTTCAGGCCATAGTGTCGACTTCCTGCCTGCTTGTGGACAAAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp ACAGGAAGCCCAAGTGAGAGGAGTTGTGACCACCTCTaGTGTTTTCTGCAGCCAGTATGGGACAAACCGCTA +
Preference number: 3 (lower is better)
Translates to: TGSPSERSCDHL*CFLQPVWDKPL
Trigger: TAGCGGTTTGTCCCATACTGGCTGCAGAAAACACCAGAGGTGGTCACAACTCCTCTCACTTGGGCTTCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp CTCATTTTTGAGATAAGGGACAAGGTCACTGTACCCTaGGGCTCCCTGATTCAGCTAGACTGGCTGACCAGC +
Preference number: 3 (lower is better)
Translates to: LIFEIRDKVTVP*GSLIQLDWLTS
Trigger: GCTGGTCAGCCAGTCTAGCTGAATCAGGGAGCCCCAGGGTACAGTGACCTTGTCCCTTATCTCAAAAATGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CCA 72 bp AGTTGGCAAACTCTGAGGCCAGGGTTTCTCAACCTGTaGGTTGTGACACCTTTGGGGGTCAAAACACCTTCC +
Preference number: 3 (lower is better)
Translates to: SWQTLRPGFLNL*VVTPLGVKTPS
Trigger: GGAAGGTGTTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGAGAAACCCTGGCCTCAGAGTTTGCCAACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp GGAGACAAACCGCTAAAGGGCAGGAAGGCTTCGATCCACACACAGGGTGAGGCTCATCTGTCTTGGCCTTaGAGTTCTGCAACTGTTTCT +
Preference number: 3 (lower is better)
Translates to: GDKPLKGRKASIHTQGEAHLSWP*SSATVS
Trigger: AGAAACAGTTGCAGAACTCAAAGGCCAAGACAGATG...AGCCTCACCCTGTGTGTGGATCGAAGCCTTCCTGCCCTTTAGCGGTTTGTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp CATGCTCTAGACAGCCCCTTCCTGTCTGGGCTGCTCTaGAATCTCACACGTGCTCCTACATCAAGCAAGAAT +
Preference number: 3 (lower is better)
Translates to: HALDSPFLSGLL*NLTRAPTSSKN
Trigger: ATTCTTGCTTGATGTAGGAGCACGTGTGAGATTTCAGAGCAGCCCAGACAGGAAGGGGCTGTCTAGAGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp CGGTCATATTTCTGCCATCTTAGAGCTTGTTGTGTCTaGGCCCTCCCACACCCTCCATCTGTCTTGGCCTTT +
Preference number: 3 (lower is better)
Translates to: RSYFCHLRACCV*ALPHPPSVLAF
Trigger: AAAGGCCAAGACAGATGGAGGGTGTGGGAGGGCTCAGACACAACAAGCTCTAAGATGGCAGAAATATGACCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp GAGGGAAAGGAAGAGAAGTCAGGCAGACAGGCAGACTaGGAATCATACAAGAGCCAGCATGCTCTACACACA +
Preference number: 3 (lower is better)
Translates to: EGKEEKSGRQAD*ESYKSQHALHT
Trigger: TGTGTGTAGAGCATGCTGGCTCTTGTATGATTCCCAGTCTGCCTGTCTGCCTGACTTCTCTTCCTTTCCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp ATGTCCTATGCTAACCAGAATGCCTGCAGGACAAGTTaGCAAACTCTGAGGCCAGGGTTTCTCAACCTGTGG +
Preference number: 3 (lower is better)
Translates to: MSYANQNACRTS*QTLRPGFLNLW
Trigger: CCACAGGTTGAGAAACCCTGGCCTCAGAGTTTGCCAACTTGTCCTGCAGGCATTCTGGTTAGCATAGGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR TCA 72 bp TATGTGATCCTAGCATTTGGGAGGCAGAAGCAGAAGTaGGTCCTGGGTCTCCGTAGCAAGACTGTCTCAAAC +
Preference number: 3 (lower is better)
Translates to: YVILAFGRQKQK*VLGLRSKTVSN
Trigger: GTTTGAGACAGTCTTGCTACGGAGACCCAGGACTCACTTCTGCTTCTGCCTCCCAAATGCTAGGATCACATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp GCTAAAGGGCAGGAAGGCTTCGATCCACACACAGGGTaGGGCTTTCTATATTCAACAGGGAGAAAGAGAAGG +
Preference number: 3 (lower is better)
Translates to: AKGQEGFDPHTG*GFLYSTGRKRR
Trigger: CCTTCTCTTTCTCCCTGTTGAATATAGAAAGCCTCACCCTGTGTGTGGATCGAAGCCTTCCTGCCCTTTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 72 bp GAAAAGCCTAAGACTGTCAACTGTCAGAGACAAAGGTaGGTGACATGGGAAGTGACACTAGGCAGCCATCGT +
Preference number: 3 (lower is better)
Translates to: EKPKTVNCQRQR*VTWEVTLGSHR
Trigger: ACGATGGCTGCCTAGTGTCACTTCCCATGTCACGCACCTTTGTCTCTGACAGTTGACAGTCTTAGGCTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 72 bp CCCCTTCCTGTCTGGGCTGCTCTGAAATCTCACACGTaGTCCTACATCAAGCAAGAATGTGTGTCTGTGTTA +
Preference number: 3 (lower is better)
Translates to: PLPVWAALKSHT*SYIKQECVSVL
Trigger: TAACACAGACACACATTCTTGCTTGATGTAGGAGCACGTGTGAGATTTCAGAGCAGCCCAGACAGGAAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 72 bp AAATATGCCAGGATACAGGAGAGTAACCTCAGTGTTTaGCAGTGTTCACCCAGAGGGAGCAGGGACTTTGCT +
Preference number: 3 (lower is better)
Translates to: KYARIQESNLSV*QCSPRGSRDFA
Trigger: AGCAAAGTCCCTGCTCCCTCTGGGTGAACACTGGCAAACACTGAGGTTACTCTCCTGTATCCTGGCATATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CAA 90 bp CCAGGGTTTCTCAACCTGTGGGTTGTGACACCTTTGGGGGTCAAAACACCTTCCTGGAAACGTGTATTGTaGTTGATGCTGTTGCTGTTG +
Preference number: 3 (lower is better)
Translates to: PGFLNLWVVTPLGVKTPSWKRVL*LMLLLL
Trigger: CAACAGCAACAGCATCAACAACAATACACGTTTCCA...GGAAGGTGTTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGAGAAACCCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp CCAGGGTTTCTCAACCTGTGGGTTGTGACACCTTTGGGGGTCAAAACACCTTCCGAATGGAAACGTGTATaGTTGTTGATGCTGTTGCTG +
Preference number: 3 (lower is better)
Translates to: PGFLNLWVVTPLGVKTPSEWKRV*LLMLLL
Trigger: CAGCAACAGCATCAACAACAATACACGTTTCCATTC...GGAAGGTGTTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGAGAAACCCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp ATTAGTGGAACACCTGATCGAAAGGCATCTCTTTCCCCTGACTTCAAAATGCAATGCCTGCAGGACAAGTaGGCAAACTCTGAGGCCAGG +
Preference number: 3 (lower is better)
Translates to: ISGTPDRKASLSPDFKMQCLQDK*ANSEAR
Trigger: CCTGGCCTCAGAGTTTGCCAACTTGTCCTGCAGGCA...TTGCATTTTGAAGTCAGGGGAAAGAGATGCCTTTCGATCAGGTGTTCCACTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR GCA 72 bp GTGTCTCTTTTTCCTTCCCAGTATGCTGGAGCTGAATaGAGAACCTGTGTGTGCTATGCAAATGTCCTCGCA +
Preference number: 3 (lower is better)
Translates to: VSLFPSQYAGAE*RTCVCYANVLA
Trigger: TGCGAGGACATTTGCATAGCACACACAGGTTCTGCATTCAGCTCCAGCATACTGGGAAGGAAAAAGAGACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp ATTGACGTTACCATCCTGGCAAAATGGTTTCAAGGATaGGACGCAGGCAGCTTAGAGAGGAATGGGTTTCTG +
Preference number: 3 (lower is better)
Translates to: IDVTILAKWFQG*DAGSLERNGFL
Trigger: CAGAAACCCATTCCTCTCTAAGCTGCCTGCGTCCCATCCTTGAAACCATTTTGCCAGGATGGTAACGTCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp TGTCCGGGGACTGTGGTCCACTCCATACTGGGCTTCTaGACACTAAAACAAGTCACTACCTCTAATCTCATT +
Preference number: 3 (lower is better)
Translates to: CPGTVVHSILGF*TLKQVTTSNLI
Trigger: AATGAGATTAGAGGTAGTGACTTGTTTTAGTGTCCAGAAGCCCAGTATGGAGTGGACCACAGTCCCCGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp CTGTGTAGACAGATATCTGCACATACCTATATGGCATaGAGATGTCAGTCACCCCACCTCATTCCTGGCCTT +
Preference number: 3 (lower is better)
Translates to: LCRQISAHTYMA*RCQSPHLIPGL
Trigger: AAGGCCAGGAATGAGGTGGGGTGACTGACATCTCCATGCCATATAGGTATGTGCAGATATCTGTCTACACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp GTGACATGGGAAGTGACACTAGGCAGCCATCGTGGTGTCTCTTTTTCCTTCCCAAGTGAAACTTCCCCCTaGCAAGAGATAAAAGAGACA +
Preference number: 3 (lower is better)
Translates to: VTWEVTLGSHRGVSFSFPSETSP*QEIKET
Trigger: TGTCTCTTTTATCTCTTGCAAGGGGGAAGTTTCACT...TGGGAAGGAAAAAGAGACACCACGATGGCTGCCTAGTGTCACTTCCCATGTCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CAA 90 bp CCTCCATCTGTCTTGGCCTTTGAGTTCTGCAACTGTTTCTTGGTGAGTTCAGCCAAACTGTCTTCTGGTTaGCAGACACTTGGCAGTATG +
Preference number: 3 (lower is better)
Translates to: PPSVLAFEFCNCFLVSSAKLSSG*QTLGSM
Trigger: CATACTGCCAAGTGTCTGCAAACCAGAAGACAGTTT...GGCTGAACTCACCAAGAAACAGTTGCAGAACTCAAAGGCCAAGACAGATGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CAA 90 bp CCAGGGTTTCTCAACCTGTGGGTTGTGACACCTTTGGGGGTCAAAACACCTTCCAATCAGGAAAGATTTTaGATCAGTACCCCCTCATAC +
Preference number: 3 (lower is better)
Translates to: PGFLNLWVVTPLGVKTPSNQERF*ISTPSY
Trigger: GTATGAGGGGGTACTGATCAAAAATCTTTCCTGATT...GGAAGGTGTTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGAGAAACCCTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR TCA 72 bp GGCTTAACACCAACTAGCCCACTAATGCCCACAACCTaGCAAGCTTTCCCTGGGAAGAAAATTGTGCATCAA +
Preference number: 3 (lower is better)
Translates to: GLTPTSPLMPTT*QAFPGKKIVHQ
Trigger: TTGATGCACAATTTTCTTCCCAGGGAAAGCTTGTCAGGTTGTGGGCATTAGTGGGCTAGTTGGTGTTAAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 72 bp TTCCTTTTCAGAATCAGAGTGAAAGGCCTAGCATCGTaGAGGCTAGGTGGAGATTTCAGTCAGCCCTTTATC +
Preference number: 3 (lower is better)
Translates to: FLFRIRVKGLAS*RLGGDFSQPFI
Trigger: GATAAAGGGCTGACTGAAATCTCCACCTAGCCTGCACGATGCTAGGCCTTTCACTCTGATTCTGAAAAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 72 bp TTGCTATTAGGCAAGTCAAAGACCAATTCCTTCATCTaGCTTTGCCTCCCCAGGCCAGAGAGTTTGAGGAAA +
Preference number: 3 (lower is better)
Translates to: LLLGKSKTNSFI*LCLPRPESLRK
Trigger: TTTCCTCAAACTCTCTGGCCTGGGGAGGCAAAGGCAGATGAAGGAATTGGTCTTTGACTTGCCTAATAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CCA 72 bp CTTTTGGATTCAATTGACGTTACCATCCTGGCAAAATaGTTTCAAGGATGGGACGCAGGCAGCTTAGAGAGG +
Preference number: 3 (lower is better)
Translates to: LLDSIDVTILAK*FQGWDAGSLER
Trigger: CCTCTCTAAGCTGCCTGCGTCCCATCCTTGAAACCATTTTGCCAGGATGGTAACGTCAATTGAATCCAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp ATTGCAATGGAGGTTTTGGAAGCACCTGGAGAAGCCTaGAGAATTTATAGGGGTGAGGGTTTCCATCACAGA +
Preference number: 3 (lower is better)
Translates to: IAMEVLEAPGEA*RIYRGEGFHHR
Trigger: TCTGTGATGGAAACCCTCACCCCTATAAATTCTCCAGGCTTCTCCAGGTGCTTCCAAAACCTCCATTGCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp AGACAAAACCACATGCATTCTTCTCATGTGTCACTGTaGGAGCTCTGTAGCAACTCACTAACCCTTTCACGG +
Preference number: 3 (lower is better)
Translates to: RQNHMHSSHVSL*ELCSNSLTLSR
Trigger: CCGTGAAAGGGTTAGTGAGTTGCTACAGAGCTCCCACAGTGACACATGAGAAGAATGCATGTGGTTTTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 72 bp TTTAGCAAAGCTTGGGGTGCAGGTGGCAGAGAGGGCTaGTTGATGGATCTTTCAATTTCTCAAACATTTCCT +
Preference number: 3 (lower is better)
Translates to: FSKAWGAGGREG*LMDLSISQTFP
Trigger: AGGAAATGTTTGAGAAATTGAAAGATCCATCAAGCAGCCCTCTCTGCCACCTGCACCCCAAGCTTTGCTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR GCA 72 bp CCATTCATAAAGAAAGGTGTTCGCCTTTCTCCTTGTTaGAACAGGACTGCAACAAGCTCTCAGCTTCAGCAT +
Preference number: 3 (lower is better)
Translates to: PFIKKGVRLSPC*NRTATSSQLQH
Trigger: ATGCTGAAGCTGAGAGCTTGTTGCAGTCCTGTTGCAACAAGGAGAAAGGCGAACACCTTTCTTTATGAATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp GCTTTCTTCTTTTGGATTCAATTGACGTTACCATCCTaGCAAAATGGTTTCAAGGATGGGACGCAGGCAGCT +
Preference number: 3 (lower is better)
Translates to: AFFFWIQLTLPS*QNGFKDGTQAA
Trigger: AGCTGCCTGCGTCCCATCCTTGAAACCATTTTGCCAGGATGGTAACGTCAATTGAATCCAAAAGAAGAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp AATCAGAGTGAAAGGCCTAGCATCGTGCAGGCTAGGTaGAGATTTCAGTCAGCCCTTTATCCTATTCAAGAT +
Preference number: 3 (lower is better)
Translates to: NQSERPSIVQAR*RFQSALYPIQD
Trigger: ATCTTGAATAGGATAAAGGGCTGACTGAAATCTCCACCTAGCCTGCACGATGCTAGGCCTTTCACTCTGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp CTAATAAAACATAGGGCAGGTTCAACGTTTTCTCCCTaGTGGTGTCGCCCAATTACCTGTCAGTCATTAAGG +
Preference number: 3 (lower is better)
Translates to: LIKHRAGSTFSP*WCRPITCQSLR
Trigger: CCTTAATGACTGACAGGTAATTGGGCGACACCATCAGGGAGAAAACGTTGAACCTGCCCTATGTTTTATTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp CTGGTATGTCTTCCGCTGAGTCTAATGGTCTCTGGTTaGCAAGGCTTTATGTGTAGCAGTGATTTCAGTTCA +
Preference number: 3 (lower is better)
Translates to: LVCLPLSLMVSG*QGFMCSSDFSS
Trigger: TGAACTGAAATCACTGCTACACATAAAGCCTTGTCAACCAGAGACCATTAGACTCAGCGGAAGACATACCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR TCA 72 bp TACTTGTTTCTGAACACAACGGTGGTAGTGCTTTTCTaGACACAAAACCATCCGCACATGCTCACAAGAGCT +
Preference number: 3 (lower is better)
Translates to: YLFLNTTVVVLF*TQNHPHMLTRA
Trigger: AGCTCTTGTGAGCATGTGCGGATGGTTTTGTGTTCAGAAAAGCACTACCACCGTTGTGTTCAGAAACAAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR GCA 72 bp CCAACAAGAACCCTCAGAGTCAATGTCAGTCGGCACTaGTTTCTTCTTTTGGATTCAATTGACGTTACCATC +
Preference number: 3 (lower is better)
Translates to: PTRTLRVNVSRH*FLLLDSIDVTI
Trigger: GATGGTAACGTCAATTGAATCCAAAAGAAGAAAGCAGTGCCGACTGACATTGACTCTGAGGGTTCTTGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp CTTGGCTGTGATCATTTGATATTGCAATGGAGGTTTTaGAAGCACCTGGAGAAGCCTGGAGAATTTATAGGG +
Preference number: 3 (lower is better)
Translates to: LGCDHLILQWRF*KHLEKPGEFIG
Trigger: CCCTATAAATTCTCCAGGCTTCTCCAGGTGCTTCCAAAACCTCCATTGCAATATCAAATGATCACAGCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CCA 72 bp TCCCAGTTGCTGTGGTATGGGGCAATTTGTGAAGAATaGAAACGTGTATTGTTGTTGATGCTGTTGCTGTTG +
Preference number: 3 (lower is better)
Translates to: SQLLWYGAICEE*KRVLLLMLLLL
Trigger: CAACAGCAACAGCATCAACAACAATACACGTTTCCATTCTTCACAAATTGCCCCATACCACAGCAACTGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CCA 72 bp TTTGTCTGGGTCAGCTCTCACAAAAGAGTACTAATTTaGGGTGTCCTTCTCTTCACAGTGATCTCTCTCTTC +
Preference number: 3 (lower is better)
Translates to: FVWVSSHKRVLI*GVLLFTVISLF
Trigger: GAAGAGAGAGATCACTGTGAAGAGAAGGACACCCCAAATTAGTACTCTTTTGTGAGAGCTGACCCAGACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp ATTAGTGGAACACCTGATCGAAAGGCATCTCTTTCCCCTGACTTCAAAATGCAATGTAGAAGCCAGAATTaGATGTCAGGTGTTCTCCTC +
Preference number: 3 (lower is better)
Translates to: ISGTPDRKASLSPDFKMQCRSQN*MSGVLL
Trigger: GAGGAGAACACCTGACATCAAATTCTGGCTTCTACA...TTGCATTTTGAAGTCAGGGGAAAGAGATGCCTTTCGATCAGGTGTTCCACTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp ATTAGTGGAACACCTGATCGAAAGGCATCTCTTTCCCCTGACTTCAAAATGCAACATGCTCACAAGAGCTaGCTGTGTAGACAGATATCT +
Preference number: 3 (lower is better)
Translates to: ISGTPDRKASLSPDFKMQHAHKS*LCRQIS
Trigger: AGATATCTGTCTACACAGCAAGCTCTTGTGAGCATG...TTGCATTTTGAAGTCAGGGGAAAGAGATGCCTTTCGATCAGGTGTTCCACTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR TCA 72 bp TGTCAGTCGGCACTGCTTTCTTCTTTTGGATTCAATTaGCGTTACCATCCTGGCAAAATGGTTTCAAGGATG +
Preference number: 3 (lower is better)
Translates to: CQSALLSSFGFN*RYHPGKMVSRM
Trigger: CATCCTTGAAACCATTTTGCCAGGATGGTAACGTCAATTGAATCCAAAAGAAGAAAGCAGTGCCGACTGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp AACTCTTTTCTGCCCTGTAACTTGGCTGTGATCATTTaGTATTGCAATGGAGGTTTTGGAAGCACCTGGAGA +
Preference number: 3 (lower is better)
Translates to: NSFLPCNLAVII*YCNGGFGSTWR
Trigger: TCTCCAGGTGCTTCCAAAACCTCCATTGCAATATCAAATGATCACAGCCAAGTTACAGGGCAGAAAAGAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR TCA 72 bp AACACTAATCTTGTCACAAACCACCCACATATCATCTaGGGACAAACATTTTACCCACTGATCCATCTCCCC +
Preference number: 3 (lower is better)
Translates to: NTNLVTNHPHII*GQTFYPLIHLP
Trigger: GGGGAGATGGATCAGTGGGTAAAATGTTTGTCCTCAGATGATATGTGGGTGGTTTGTGACAAGATTAGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR CCA 72 bp TCAGAGTCAATGTCAGTCGGCACTGCTTTCTTCTTTTaGATTCAATTGACGTTACCATCCTGGCAAAATGGT +
Preference number: 3 (lower is better)
Translates to: SESMSVGTAFFF*IQLTLPSWQNG
Trigger: ACCATTTTGCCAGGATGGTAACGTCAATTGAATCCAAAAGAAGAAAGCAGTGCCGACTGACATTGACTCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CAA 90 bp CCTTTCTCCTTGTTGCAACAGGACTGCAACAAGCTCTCAGCTTCAGCATTTAAACACTGCTTTCTTCTTTaGGATTCAATTGACGTTACC +
Preference number: 3 (lower is better)
Translates to: PFSLLQQDCNKLSASAFKHCFLL*DSIDVT
Trigger: GGTAACGTCAATTGAATCCAAAAGAAGAAAGCAGTG...TTTAAATGCTGAAGCTGAGAGCTTGTTGCAGTCCTGTTGCAACAAGGAGAAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CAA 90 bp ACAATGTGTATTGCATGCTTAGCTTTTTACATGACACTGGGAACCCAAACCCAACTGTTGTTGATGCTGTaGCTGTTGTTGATGCTGTTG +
Preference number: 3 (lower is better)
Translates to: TMCIACLAFYMTLGTQTQLLLML*LLLMLL
Trigger: CAACAGCATCAACAACAGCAACAGCATCAACAACAG...TTGGGTTTGGGTTCCCAGTGTCATGTAAAAAGCTAAGCATGCAATACACATTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp ATTAGTGGAACACCTGATCGAAAGGCATCTCTTTCCCCTGACTTCAAAATGCAATTGATGCTGTTGCTGTaGCTATTGTTGATGCTGTTG +
Preference number: 3 (lower is better)
Translates to: ISGTPDRKASLSPDFKMQLMLLL*LLLMLL
Trigger: CAACAGCATCAACAATAGCAACAGCAACAGCATCAA...TTGCATTTTGAAGTCAGGGGAAAGAGATGCCTTTCGATCAGGTGTTCCACTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp ACAATGTGTATTGCATGCTTAGCTTTTTACATGACACTGGGAACCCAAACCCAATACTGTTTTTCCCAGTaGCTGTGGTATGGGGCAATT +
Preference number: 3 (lower is better)
Translates to: TMCIACLAFYMTLGTQTQYCFSQ*LWYGAI
Trigger: AATTGCCCCATACCACAGCAACTGGGAAAAACAGTA...TTGGGTTTGGGTTCCCAGTGTCATGTAAAAAGCTAAGCATGCAATACACATTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp TATGCATGTAGAAGCCAGAATTTGATGTCAGGTGTTCTCCTCAATTACATTCCACCCAAGTCTTCATGTTaGCAACACAGGCACTTGACT +
Preference number: 3 (lower is better)
Translates to: YACRSQNLMSGVLLNYIPPKSSC*QHRHLT
Trigger: AGTCAAGTGCCTGTGTTGCAAACATGAAGACTTGGG...TGGAATGTAATTGAGGAGAACACCTGACATCAAATTCTGGCTTCTACATGCATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp ATTAGTGGAACACCTGATCGAAAGGCATCTCTTTCCCCTGACTTCAAAATGCAACAAAAGAGTACTAATTaGGGGTGTCCTTCTCTTCAC +
Preference number: 3 (lower is better)
Translates to: ISGTPDRKASLSPDFKMQQKSTN*GCPSLH
Trigger: GTGAAGAGAAGGACACCCCAAATTAGTACTCTTTTG...TTGCATTTTGAAGTCAGGGGAAAGAGATGCCTTTCGATCAGGTGTTCCACTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR TCA 72 bp CTGTTTTTCCCAGTTGCTGTGGTATGGGGCAATTTGTaGAGAATGGAAACGTGTATTGTTGTTGATGCTGTT +
Preference number: 3 (lower is better)
Translates to: LFFPVAVVWGNL*RMETCIVVDAV
Trigger: AACAGCATCAACAACAATACACGTTTCCATTCTTCACAAATTGCCCCATACCACAGCAACTGGGAAAAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR TCA 72 bp TGTGTACATACGTGTATGCATGTAGAAGCCAGAATTTaGTGTCAGGTGTTCTCCTCAATTACATTCCACCTC +
Preference number: 3 (lower is better)
Translates to: CVHTCMHVEARI*CQVFSSITFHL
Trigger: GAGGTGGAATGTAATTGAGGAGAACACCTGACATCAAATTCTGGCTTCTACATGCATACACGTATGTACACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR GCA 72 bp TGTCTTGTCAGGAGTGAGATTACAATGTGTATTGCATaGTTAGCTTTTTACATGACACTGGGAACCCAAACC +
Preference number: 3 (lower is better)
Translates to: CLVRSEITMCIA*LAFYMTLGTQT
Trigger: GGTTTGGGTTCCCAGTGTCATGTAAAAAGCTAAGCATGCAATACACATTGTAATCTCACTCCTGACAAGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CCA 72 bp AGCTTTCCCTGGGAAGAAAATTGTGCATCAATCATTTaGTCCATTCATAAAGAAAGGTGTTCGCCTTTCTCC +
Preference number: 3 (lower is better)
Translates to: SFPWEENCASII*SIHKERCSPFS
Trigger: GGAGAAAGGCGAACACCTTTCTTTATGAATGGACCAAATGATTGATGCACAATTTTCTTCCCAGGGAAAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CAA 90 bp AATAAAGCCCCTGAATTTGGCAAAATATTTCCTGAACTAAACTGTCTTCTGGTTATTGCAATGGAGGTTTaGGAAGCACCTGGAGAAGCC +
Preference number: 3 (lower is better)
Translates to: NKAPEFGKIFPELNCLLVIAMEV*EAPGEA
Trigger: GGCTTCTCCAGGTGCTTCCAAAACCTCCATTGCAAT...AACCAGAAGACAGTTTAGTTCAGGAAATATTTTGCCAAATTCAGGGGCTTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CAA 90 bp ACAATGTGTATTGCATGCTTAGCTTTTTACATGACACTGGGAACCCAAACCCAAATGCTGTTGCTGTTGTaGATGCTGTTGTGGTTGTTT +
Preference number: 3 (lower is better)
Translates to: TMCIACLAFYMTLGTQTQMLLLL*MLLWLF
Trigger: AAACAACCACAACAGCATCAACAACAGCAACAGCAT...TTGGGTTTGGGTTCCCAGTGTCATGTAAAAAGCTAAGCATGCAATACACATTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp ACTGATCCATCTCCCCCAACTCCAAACCTGGCTTTTGAAACAATCTTAATAAAACTGTTGTTGATGCTGTaGCTGTTGTTGATGCTGTTG +
Preference number: 3 (lower is better)
Translates to: TDPSPPTPNLAFETILIKLLLML*LLLMLL
Trigger: CAACAGCATCAACAACAGCAACAGCATCAACAACAG...TTTTATTAAGATTGTTTCAAAAGCCAGGTTTGGAGTTGGGGGAGATGGATCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp ACAATGTGTATTGCATGCTTAGCTTTTTACATGACACTGGGAACCCAAACCCAATTGATGCTGTTGCTGTaGCTATTGTTGATGCTGTTG +
Preference number: 3 (lower is better)
Translates to: TMCIACLAFYMTLGTQTQLMLLL*LLLMLL
Trigger: CAACAGCATCAACAATAGCAACAGCAACAGCATCAA...TTGGGTTTGGGTTCCCAGTGTCATGTAAAAAGCTAAGCATGCAATACACATTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp ATATGTGCATGTGTGTGTAAGCAAACTACAAGAGCTGAAAACGCCTTTGCATACTTCTTTTGGATTCAATaGACGTTACCATCCTGGCAA +
Preference number: 3 (lower is better)
Translates to: ICACVCKQTTRAENAFAYFFWIQ*TLPSWQ
Trigger: TTGCCAGGATGGTAACGTCAATTGAATCCAAAAGAA...GTATGCAAAGGCGTTTTCAGCTCTTGTAGTTTGCTTACACACACATGCACATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR-3UTR CAA 90 bp TATGCATGTAGAAGCCAGAATTTGATGTCAGGTGTTCTCCTCAATTACATTCCATGGAAACGTGTATTGTaGTTGATGCTGTTGCTGTTG +
Preference number: 3 (lower is better)
Translates to: YACRSQNLMSGVLLNYIPWKRVL*LMLLLL
Trigger: CAACAGCAACAGCATCAACAACAATACACGTTTCCA...TGGAATGTAATTGAGGAGAACACCTGACATCAAATTCTGGCTTCTACATGCATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACCCCAAGTCTTCATGTTaGCAACACAGGCACTTGACT +
Preference number: 3 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNPKSSC*QHRHLT
Trigger: AGTCAAGTGCCTGTGTTGCAAACATGAAGACTTGGG...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR TCA 72 bp GAAAATGAACCGGCGCTTAACTGTACAGTACTGCTTTaGAGATGTACACTTAATAAATCAGGCTCACAGACT +
Preference number: 3 (lower is better)
Translates to: ENEPALNCTVLL*RCTLNKSGSQT
Trigger: AGTCTGTGAGCCTGATTTATTAAGTGTACATCTTCAAAGCAGTACTGTACAGTTAAGCGCCGGTTCATTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACCATGCTCACAAGAGCTaGCTGTGTAGACAGATATCT +
Preference number: 3 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNHAHKS*LCRQIS
Trigger: AGATATCTGTCTACACAGCAAGCTCTTGTGAGCATG...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACAAAGCATTAGGGAGGTaGAGAACCACCATATTAAAC +
Preference number: 3 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNKALGR*RTTILN
Trigger: GTTTAATATGGTGGTTCTCAACCTCCCTAATGCTTT...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR-3UTR CAA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACGGACAAAGACATACCTaGCCAAGATTGAAAATGTAT +
Preference number: 3 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNGQRHT*PRLKMY
Trigger: ATACATTTTCAATCTTGGCAAGGTATGTCTTTGTCC...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CAA 72 bp CCCGCCACTGACTGCGGCTGTCCCTGCTGTGCTCATTaGCTCCCCTCATCCTCAGACAGGACCCATCACCTT +
Preference number: 4 (lower is better)
Translates to: PATDCGCPCCAH*LPSSSDRTHHL
Trigger: AAGGTGATGGGTCCTGTCTGAGGATGAGGGGAGCAAATGAGCACAGCAGGGACAGCCGCAGTCAGTGGCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS-3UTR TCA 90 bp CCAGGGTTTCTCAACCTGTGGGTTGTGACACCTTTGGGGGTCAAAACACCTTCCTTGCTCTGTGTAAGCTaGCCCTTCAGGTGGAGCCCC +
Preference number: 4 (lower is better)
Translates to: PGFLNLWVVTPLGVKTPSLLCVS*PFRWSP
Trigger: GGGGCTCCACCTGAAGGGTCAGCTTACACAGAGCAA...GGAAGGTGTTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGAGAAACCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
3UTR CAA 72 bp AAATGGCACTGTCTGGGCATCAGCAGCATACTTCCTTaGTCCACAAGCAGGCAGGAAGTCGACACTATGGCC +
Preference number: 4 (lower is better)
Translates to: KWHCLGISSILP*STSRQEVDTMA
Trigger: GGCCATAGTGTCGACTTCCTGCCTGCTTGTGGACAAAGGAAGTATGCTGCTGATGCCCAGACAGTGCCATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS-3UTR GCA 90 bp CGATGGCCCAGGAGCTCGAGCAAATGGAAACCAGCTCTTTCTTTTCCTCTTTCCCGAACCACATCCTGCTaGTTCTTCTTGATCGCCACG +
Preference number: 4 (lower is better)
Translates to: RWPRSSSKWKPALSFPLSRTTSC*FFLIAT
Trigger: CGTGGCGATCAAGAAGAAGCAGCAGGATGTGGTTCG...GGAAAGAGGAAAAGAAAGAGCTGGTTTCCATTTGCTCGAGCTCCTGGGCCATCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR GCA 90 bp ACAATGTGTATTGCATGCTTAGCTTTTTACATGACACTGGGAACCCAAACCCAAGGCAGAGGGTTGCCCTaGGCAGGCTTCTTCTCAGGG +
Preference number: 4 (lower is better)
Translates to: TMCIACLAFYMTLGTQTQGRGLP*AGFFSG
Trigger: CCCTGAGAAGAAGCCTGCGCAGGGCAACCCTCTGCC...TTGGGTTTGGGTTCCCAGTGTCATGTAAAAAGCTAAGCATGCAATACACATTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR GCA 90 bp GTGACACTAGGCAGCCATCGTGGTGTCTCTTTTTCCTTCCCAGTATGCTGGAGCTTTTTGTACATCCACTaGCTCTGTTCTTCCGACATG +
Preference number: 4 (lower is better)
Translates to: VTLGSHRGVSFSFPVCWSFLYIH*LCSSDM
Trigger: CATGTCGGAAGAACAGAGGCAGTGGATGTACAAAAA...GCTCCAGCATACTGGGAAGGAAAAAGAGACACCACGATGGCTGCCTAGTGTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS-3UTR GCA 90 bp TATGCATGTAGAAGCCAGAATTTGATGTCAGGTGTTCTCCTCAATTACATTCCAGGCAGAGGGTTGCCCTaGGCAGGCTTCTTCTCAGGG +
Preference number: 4 (lower is better)
Translates to: YACRSQNLMSGVLLNYIPGRGLP*AGFFSG
Trigger: CCCTGAGAAGAAGCCTGCGCAGGGCAACCCTCTGCC...TGGAATGTAATTGAGGAGAACACCTGACATCAAATTCTGGCTTCTACATGCATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CAA 72 bp CCATCTGTCTTGGCCTTTGAGTTCTGCAACTGTTTCTaGGTGAGTTCAGCCTTAGCCCTCGCCTTCAGAAAT +
Preference number: 4 (lower is better)
Translates to: PSVLAFEFCNCF*VSSALALAFRN
Trigger: ATTTCTGAAGGCGAGGGCTAAGGCTGAACTCACCAAGAAACAGTTGCAGAACTCAAAGGCCAAGACAGATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS-3UTR GCA 90 bp CGATGGCCCAGGAGCTCGAGCAAATGGAAACCAGCTCTTTCTTTTCCTCTTTCCTTTTTGTACATCCACTaGCTCTGTTCTTCCGACATG +
Preference number: 4 (lower is better)
Translates to: RWPRSSSKWKPALSFPLSFLYIH*LCSSDM
Trigger: CATGTCGGAAGAACAGAGGCAGTGGATGTACAAAAA...GGAAAGAGGAAAAGAAAGAGCTGGTTTCCATTTGCTCGAGCTCCTGGGCCATCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR TCA 90 bp ATTAGTGGAACACCTGATCGAAAGGCATCTCTTTCCCCTGACTTCAAAATGCAATCCCCATTAAATATCTaGGGTGGCAGAGGGTTGCCC +
Preference number: 4 (lower is better)
Translates to: ISGTPDRKASLSPDFKMQSPLNI*GGRGLP
Trigger: GGGCAACCCTCTGCCACCTCAGATATTTAATGGGGA...TTGCATTTTGAAGTCAGGGGAAAGAGATGCCTTTCGATCAGGTGTTCCACTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000188241.7
CDS-3UTR TCA 90 bp ACAATGTGTATTGCATGCTTAGCTTTTTACATGACACTGGGAACCCAAACCCAATTGCTCTGTGTAAGCTaGCCCTTCAGGTGGAGCCCT +
Preference number: 4 (lower is better)
Translates to: TMCIACLAFYMTLGTQTQLLCVS*PFRWSP
Trigger: AGGGCTCCACCTGAAGGGTCAGCTTACACAGAGCAA...TTGGGTTTGGGTTCCCAGTGTCATGTAAAAAGCTAAGCATGCAATACACATTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188030.2
CDS-3UTR GCA 90 bp TGTTATTCTGAAAAGCCTAAGACTGTCAACTGTCAGAGACAAAGGTGCGTGACACGAACCACATCCTGCTaGTTCTTCTTGATCGCCACG +
Preference number: 4 (lower is better)
Translates to: CYSEKPKTVNCQRQRCVTRTTSC*FFLIAT
Trigger: CGTGGCGATCAAGAAGAAGCAGCAGGATGTGGTTCG...TGTCACGCACCTTTGTCTCTGACAGTTGACAGTCTTAGGCTTTTCAGAATAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS-3UTR GCA 90 bp AATAAAGCCCCTGAATTTGGCAAAATATTTCCTGAACTAAACTGTCTTCTGGTTGGCAGAGGGTTGCCCTaGGCAGGCTTCTTCTCAGGG +
Preference number: 4 (lower is better)
Translates to: NKAPEFGKIFPELNCLLVGRGLP*AGFFSG
Trigger: CCCTGAGAAGAAGCCTGCGCAGGGCAACCCTCTGCC...AACCAGAAGACAGTTTAGTTCAGGAAATATTTTGCCAAATTCAGGGGCTTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS-3UTR CCA 90 bp CCTTTCTCCTTGTTGCAACAGGACTGCAACAAGCTCTCAGCTTCAGCATTTAAAATTAAATATCTGAGGTaGCAGAGGGTTGCCCTGCGC +
Preference number: 4 (lower is better)
Translates to: PFSLLQQDCNKLSASAFKIKYLR*QRVALR
Trigger: GCGCAGGGCAACCCTCTGCCACCTCAGATATTTAAT...TTTAAATGCTGAAGCTGAGAGCTTGTTGCAGTCCTGTTGCAACAAGGAGAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS-3UTR TCA 90 bp AGTTCCAAATTGCTATTAGGCAAGTCAAAGACCAATTCCTTCATCTGCCTTTGCTCCCCATTAAATATCTaGGGTGGCAGAGGGTTGCCC +
Preference number: 4 (lower is better)
Translates to: SSKLLLGKSKTNSFICLCSPLNI*GGRGLP
Trigger: GGGCAACCCTCTGCCACCTCAGATATTTAATGGGGA...GCAAAGGCAGATGAAGGAATTGGTCTTTGACTTGCCTAATAGCAATTTGGAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR GCA 90 bp AGTTCCAAATTGCTATTAGGCAAGTCAAAGACCAATTCCTTCATCTGCCTTTGCCGAACCACATCCTGCTaGTTCTTCTTGATCGCCACG +
Preference number: 4 (lower is better)
Translates to: SSKLLLGKSKTNSFICLCRTTSC*FFLIAT
Trigger: CGTGGCGATCAAGAAGAAGCAGCAGGATGTGGTTCG...GCAAAGGCAGATGAAGGAATTGGTCTTTGACTTGCCTAATAGCAATTTGGAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR TCA 90 bp AATAAAGCCCCTGAATTTGGCAAAATATTTCCTGAACTAAACTGTCTTCTGGTTTCCCCATTAAATATCTaGGGTGGCAGAGGGTTGCCC +
Preference number: 4 (lower is better)
Translates to: NKAPEFGKIFPELNCLLVSPLNI*GGRGLP
Trigger: GGGCAACCCTCTGCCACCTCAGATATTTAATGGGGA...AACCAGAAGACAGTTTAGTTCAGGAAATATTTTGCCAAATTCAGGGGCTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
3UTR CAA 72 bp ATGTCAGTCGGCACTGCTTTCTTCTTTTGGATTCAATaGACGTTACCATCCTGGCAAAATGGTTTCAAGGAT +
Preference number: 4 (lower is better)
Translates to: MSVGTAFFFWIQ*TLPSWQNGFKD
Trigger: ATCCTTGAAACCATTTTGCCAGGATGGTAACGTCAATTGAATCCAAAAGAAGAAAGCAGTGCCGACTGACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS-3UTR CCA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACATTAAATATCTGAGGTaGCAGAGGGTTGCCCTGCGC +
Preference number: 4 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNIKYLR*QRVALR
Trigger: GCGCAGGGCAACCCTCTGCCACCTCAGATATTTAAT...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
3UTR CAA 72 bp ATGTGTACATACGTGTATGCATGTAGAAGCCAGAATTaGATGTCAGGTGTTCTCCTCAATTACATTCCACCT +
Preference number: 4 (lower is better)
Translates to: MCTYVYACRSQN*MSGVLLNYIPP
Trigger: AGGTGGAATGTAATTGAGGAGAACACCTGACATCAAATTCTGGCTTCTACATGCATACACGTATGTACACAT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS GCA 90 bp CCCTGCGCAGGCTTCTTCTCAGGGGGAATGTTTTTGTACATCCACTaGCTCTGTTCTTCCGACATGGTGATGTCCACTTCCTCGAACTCT +
Preference number: 5 (lower is better)
Translates to: PCAGFFSGGMFLYIH*LCSSDMVMSTSSNS
Trigger: AGAGTTCGAGGAAGTGGACATCACCATGTCGGAAGAACAGAGGCAGTGGATGTACAAAAACATTCCCCCTGAGAAGAAGCCTGCGCAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000113215.10
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR CAA 90 bp CCAGGGTTTCTCAACCTGTGGGTTGTGACACCTTTGGGGGTCAAAACACCTTCCTCCTCGAACTCTATCTaGTTGGCTTCCAGAAACCGA +
Preference number: 5 (lower is better)
Translates to: PGFLNLWVVTPLGVKTPSSSNSI*LASRNR
Trigger: TCGGTTTCTGGAAGCCAACAAGATAGAGTTCGAGGA...GGAAGGTGTTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGAGAAACCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR CAA 90 bp CCAGGGTTTCTCAACCTGTGGGTTGTGACACCTTTGGGGGTCAAAACACCTTCCTCAGGGGGAATGTTTTaGTACATCCACTGCCTCTGT +
Preference number: 5 (lower is better)
Translates to: PGFLNLWVVTPLGVKTPSSGGMF*YIHCLC
Trigger: ACAGAGGCAGTGGATGTACAAAAACATTCCCCCTGA...GGAAGGTGTTTTGACCCCCAAAGGTGTCACAACCCACAGGTTGAGAAACCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR CAA 90 bp CCTCCATCTGTCTTGGCCTTTGAGTTCTGCAACTGTTTCTTGGTGAGTTCAGCCTCAGGGGGAATGTTTTaGTACATCCACTGCCTCTGT +
Preference number: 5 (lower is better)
Translates to: PPSVLAFEFCNCFLVSSASGGMF*YIHCLC
Trigger: ACAGAGGCAGTGGATGTACAAAAACATTCCCCCTGA...GGCTGAACTCACCAAGAAACAGTTGCAGAACTCAAAGGCCAAGACAGATGGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS TCA 90 bp GGGGAATGTTTTTGTACATCCACTGCCTCTGTTCTTCCGACATGGTaGTGTCCACTTCCTCGAACTCTATCTTGTTGGCTTCCAGAAACC +
Preference number: 5 (lower is better)
Translates to: GECFCTSTASVLPTW*CPLPRTLSCWLPET
Trigger: GGTTTCTGGAAGCCAACAAGATAGAGTTCGAGGAAGTGGACATCACCATGTCGGAAGAACAGAGGCAGTGGATGTACAAAAACATTCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000113215.10
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR CAA 90 bp CCTTTCTCCTTGTTGCAACAGGACTGCAACAAGCTCTCAGCTTCAGCATTTAAATCGAACTCTATCTTGTaGGCTTCCAGAAACCGAACC +
Preference number: 5 (lower is better)
Translates to: PFSLLQQDCNKLSASAFKSNSIL*ASRNRT
Trigger: GGTTCGGTTTCTGGAAGCCAACAAGATAGAGTTCGA...TTTAAATGCTGAAGCTGAGAGCTTGTTGCAGTCCTGTTGCAACAAGGAGAAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS-3UTR CAA 90 bp TATGCATGTAGAAGCCAGAATTTGATGTCAGGTGTTCTCCTCAATTACATTCCATCGAACTCTATCTTGTaGGCTTCCAGAAACCGAACC +
Preference number: 5 (lower is better)
Translates to: YACRSQNLMSGVLLNYIPSNSIL*ASRNRT
Trigger: GGTTCGGTTTCTGGAAGCCAACAAGATAGAGTTCGA...TGGAATGTAATTGAGGAGAACACCTGACATCAAATTCTGGCTTCTACATGCATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR CAA 90 bp ATGTGTGAGATTAACTCTAAATATGCCAGGATACAGGAGAGTAACCTCAGTGTTTCCTCGAACTCTATCTaGTTGGCTTCCAGAAACCGA +
Preference number: 5 (lower is better)
Translates to: MCEINSKYARIQESNLSVSSNSI*LASRNR
Trigger: TCGGTTTCTGGAAGCCAACAAGATAGAGTTCGAGGA...AACACTGAGGTTACTCTCCTGTATCCTGGCATATTTAGAGTTAATCTCACACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113215.10
CDS-3UTR CAA 90 bp TATGCATGTAGAAGCCAGAATTTGATGTCAGGTGTTCTCCTCAATTACATTCCATCAGGGGGAATGTTTTaGTACATCCACTGCCTCTGT +
Preference number: 5 (lower is better)
Translates to: YACRSQNLMSGVLLNYIPSGGMF*YIHCLC
Trigger: ACAGAGGCAGTGGATGTACAAAAACATTCCCCCTGA...TGGAATGTAATTGAGGAGAACACCTGACATCAAATTCTGGCTTCTACATGCATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS-3UTR CAA 90 bp CCACTGTTTTTAAGTCATTTCTGTCGATCGTTATTACTTGTTTCTGAACACAACTCCTCGAACTCTATCTaGTTGGCTTCCAGAAACCGA +
Preference number: 5 (lower is better)
Translates to: PLFLSHFCRSLLLVSEHNSSNSI*LASRNR
Trigger: TCGGTTTCTGGAAGCCAACAAGATAGAGTTCGAGGA...GTTGTGTTCAGAAACAAGTAATAACGATCGACAGAAATGACTTAAAAACAGTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS TCA 72 bp TGGAGCCCTCCACAGTATCGATCCCCATTAAATATCTaGGGTGGCAGAGGGTTGCCCTGCGCAGGCTTCTTC +
Preference number: 6 (lower is better)
Translates to: WSPPQYRSPLNI*GGRGLPCAGFF
Trigger: GAAGAAGCCTGCGCAGGGCAACCCTCTGCCACCTCAGATATTTAATGGGGATCGATACTGTGGAGGGCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188030.2
CDS CCA 72 bp CCCTCCACAGTATCGATCCCCATTAAATATCTGAGGTaGCAGAGGGTTGCCCTGCGCAGGCTTCTTCTCAGG +
Preference number: 6 (lower is better)
Translates to: PSTVSIPIKYLR*QRVALRRLLLR
Trigger: CCTGAGAAGAAGCCTGCGCAGGGCAACCCTCTGCCACCTCAGATATTTAATGGGGATCGATACTGTGGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188030.2
CDS CCA 72 bp GTCTCCACAGTATCGATCCCCATTAAATATCTGAGGTaGCAGAGGGTTGCCCTGCGCAGGCTTCTTCTCAGG +
Preference number: 6 (lower is better)
Translates to: VSTVSIPIKYLR*QRVALRRLLLR
Trigger: CCTGAGAAGAAGCCTGCGCAGGGCAACCCTCTGCCACCTCAGATATTTAATGGGGATCGATACTGTGGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113215.10
ENSMUST00000188241.7
CDS GCA 72 bp GGCTTCTTCTCAGGGGGAATGTTTTTGTACATCCACTaGCTCTGTTCTTCCGACATGGTGATGTCCACTTCC +
Preference number: 6 (lower is better)
Translates to: GFFSGGMFLYIH*LCSSDMVMSTS
Trigger: GGAAGTGGACATCACCATGTCGGAAGAACAGAGGCAGTGGATGTACAAAAACATTCCCCCTGAGAAGAAGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000113215.10
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS CAA 72 bp GACATGGTGATGTCCACTTCCTCGAACTCTATCTTGTaGGCTTCCAGAAACCGAACCACATCCTGCTGCTTC +
Preference number: 6 (lower is better)
Translates to: DMVMSTSSNSIL*ASRNRTTSCCF
Trigger: GAAGCAGCAGGATGTGGTTCGGTTTCTGGAAGCCAACAAGATAGAGTTCGAGGAAGTGGACATCACCATGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113215.10
ENSMUST00000188030.2
ENSMUST00000188241.7
CDS CAA 90 bp TGTTCTTCCGACATGGTGATGTCCACTTCCTCGAACTCTATCTTGTaGGCTTCCAGAAACCGAACCACATCCTGCTGCTTCTTCTTGATC +
Preference number: 6 (lower is better)
Translates to: CSSDMVMSTSSNSIL*ASRNRTTSCCFFLI
Trigger: GATCAAGAAGAAGCAGCAGGATGTGGTTCGGTTTCTGGAAGCCAACAAGATAGAGTTCGAGGAAGTGGACATCACCATGTCGGAAGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000113215.10
ENSMUST00000188030.2
ENSMUST00000188241.7