Pregenerated sensors for SH3BGRL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031246Ensembl transcript IDs: ENSMUST00000033598.9
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGAACTGCAATCTTTTCTCCATGACTTATATACCCACATTGTACTaGGGCAAGCAACTTAGAAACATGACTATAACTGCATGTATAAGC | + |
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Preference number: 1 (lower is better) Translates to: VNCNLFSMTYIPTLY*GKQLRNMTITACIS Trigger: GCTTATACATGCAGTTATAGTCATGTTTCTAAGTTGCTTGCCTCAGTACAATGTGGGTATATAAGTCATGGAGAAAAGATTGCAGTTCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR TCA 90 bp | TCACGTTTGAGTTTCAGTAAACTAAGCTATGGCTCCATTACATATTaGATTTTTGCCAAGTACAGTCTAGGAAAGAGCAGGTATGATGAT | + |
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Preference number: 1 (lower is better) Translates to: SRLSFSKLSYGSITY*IFAKYSLGKSRYDD Trigger: ATCATCATACCTGCTCTTTCCTAGACTGTACTTGGCAAAAATTCAATATGTAATGGAGCCATAGCTTAGTTTACTGAAACTCAAACGTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR TCA 90 bp | TCTGTGTTCTTTGCAAGGAAGGGCCAATTTAAAGTGAACTGCAATCTTTTCTCCTCACTGGCTGTGCAATaGAAGGTTACATCTAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: SVFFARKGQFKVNCNLFSSLAVQ*KVTSRS Trigger: GCTTCTAGATGTAACCTTTCATTGCACAGCCAGTGA...GGAGAAAAGATTGCAGTTCACTTTAAATTGGCCCTTCCTTGCAAAGAACACAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR CCA 90 bp | CATTGTGGGAATAAGAGTCTCTCTCTCTTCTCTCTTCTCTCTCTCTCTCTCTCTAGAACAGAAATGCCTTaGCAGATAACAATGCTACTC | + |
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Preference number: 2 (lower is better) Translates to: HCGNKSLSLFSLLSLSLSRTEMP*QITMLL Trigger: GAGTAGCATTGTTATCTGCCAAGGCATTTCTGTTCT...AGAGAGAGAGAGAGAGAGAAGAGAGAAGAGAGAGAGACTCTTATTCCCACAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR TCA 90 bp | CCCTATTCACATATACTTAGGGTCCCAATGAAGTGTCCACATTTAGCAGTACAAGCAATCTTTTCTCCATaGCTTATATACCCACATTGT | + |
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Preference number: 2 (lower is better) Translates to: PYSHILRVPMKCPHLAVQAIFSP*LIYPHC Trigger: ACAATGTGGGTATATAAGTCATGGAGAAAAGATTGC...TTGTACTGCTAAATGTGGACACTTCATTGGGACCCTAAGTATATGTGAATAGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR CCA 90 bp | TCTGTGTTCTTTGCAAGGAAGGGCCAATTTAAAGTGAACTGCAATCTTTTCTCCAGCTATTTTGATCACTaGCTGTGCAATGAAAGGTTA | + |
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Preference number: 2 (lower is better) Translates to: SVFFARKGQFKVNCNLFSSYFDH*LCNERL Trigger: TAACCTTTCATTGCACAGCCAGTGATCAAAATAGCT...GGAGAAAAGATTGCAGTTCACTTTAAATTGGCCCTTCCTTGCAAAGAACACAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR GCA 90 bp | GGAGACAAGAGCCACTACTACTTCGTTCAGCAAACACCAAAAGAAAATATATCTTTTGATCACTGGCTGTaGAATGAAAGGTTACATCTA | + |
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Preference number: 2 (lower is better) Translates to: GDKSHYYFVQQTPKENISFDHWL*NERLHL Trigger: TAGATGTAACCTTTCATTGCACAGCCAGTGATCAAA...AGATATATTTTCTTTTGGTGTTTGCTGAACGAAGTAGTAGTGGCTCTTGTCTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR CAA 90 bp | GTTGACAAAATGACAGGCTTCAATTGGAGAAGACTCAATTCAAACTaGTACTTTAAATCTACAGACTTCAGGGTATTATCCCACAGACAT | + |
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Preference number: 2 (lower is better) Translates to: VDKMTGFNWRRLNSN*YFKSTDFRVLSHRH Trigger: ATGTCTGTGGGATAATACCCTGAAGTCTGTAGATTTAAAGTACAAGTTTGAATTGAGTCTTCTCCAATTGAAGCCTGTCATTTTGTCAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR GCA 90 bp | CAAACTTGTACTTTAAATCTACAGACTTCAGGGTATTATCCCACAGACATAAACCATCTTCTGGTTGAATaGTTTGGGTCTTGCTTATCT | + |
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Preference number: 2 (lower is better) Translates to: QTCTLNLQTSGYYPTDINHLLVE*FGSCLS Trigger: AGATAAGCAAGACCCAAAGCATTCAACCAGAAGATG...GTTTATGTCTGTGGGATAATACCCTGAAGTCTGTAGATTTAAAGTACAAGTTTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR CCA 72 bp | CACTGGCTGTGCAATGAAAGGTTACATCTAGAAGCCTaGAAAACTTGTGGTTCGGGGCATACATGTTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: HWLCNERLHLEA*KTCGSGHTCFF Trigger: AAAGAAACATGTATGCCCCGAACCACAAGTTTTCCAGGCTTCTAGATGTAACCTTTCATTGCACAGCCAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR CAA 90 bp | CATTGTGGGAATAAGAGTCTCTCTCTCTTCTCTCTTCTCTCTCTCTCTCTCTCTCAGAACAGAAATGCCTaGGCAGATAACAATGCTACT | + |
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Preference number: 3 (lower is better) Translates to: HCGNKSLSLFSLLSLSLSQNRNA*ADNNAT Trigger: AGTAGCATTGTTATCTGCCAAGGCATTTCTGTTCTG...AGAGAGAGAGAGAGAGAGAAGAGAGAAGAGAGAGAGACTCTTATTCCCACAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTGTACTTTAAATCTACAGACTTCAGGGTATTATCCCACAGACATAAACGGGAAGCCAGCTATTTaGATCACTGGCTGTGCAATG | + |
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Preference number: 3 (lower is better) Translates to: QTCTLNLQTSGYYPTDINGKPAI*ITGCAM Trigger: CATTGCACAGCCAGTGATCAAAATAGCTGGCTTCCC...GTTTATGTCTGTGGGATAATACCCTGAAGTCTGTAGATTTAAAGTACAAGTTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR CAA 90 bp | CCCTATTCACATATACTTAGGGTCCCAATGAAGTGTCCACATTTAGCAGTACAAAAAAGTCTGTGTTCTTaGCAAGGAAGGGCCAATTTA | + |
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Preference number: 3 (lower is better) Translates to: PYSHILRVPMKCPHLAVQKSLCS*QGRANL Trigger: TAAATTGGCCCTTCCTTGCAAAGAACACAGACTTTT...TTGTACTGCTAAATGTGGACACTTCATTGGGACCCTAAGTATATGTGAATAGGG 40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR CAA 90 bp | CCCTATTCACATATACTTAGGGTCCCAATGAAGTGTCCACATTTAGCAGTACAAAGCATCAATTCACGTTaGAGTTTCAGTAAACTAAGC | + |
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Preference number: 3 (lower is better) Translates to: PYSHILRVPMKCPHLAVQSINSR*SFSKLS Trigger: GCTTAGTTTACTGAAACTCAAACGTGAATTGATGCT...TTGTACTGCTAAATGTGGACACTTCATTGGGACCCTAAGTATATGTGAATAGGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTGTACTTTAAATCTACAGACTTCAGGGTATTATCCCACAGACATAAACATCAACATCTTCTGGTaGAATGCTTTGGGTCTTGCT | + |
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Preference number: 3 (lower is better) Translates to: QTCTLNLQTSGYYPTDININIFW*NALGLA Trigger: AGCAAGACCCAAAGCATTCAACCAGAAGATGTTGAT...GTTTATGTCTGTGGGATAATACCCTGAAGTCTGTAGATTTAAAGTACAAGTTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR TCA 72 bp | AGTTTCAGTAAACTAAGCTATGGCTCCATTACATATTaGATTTTTGCCAAGTACAGTCTAGGAAAGAGCAGG | + |
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Preference number: 3 (lower is better) Translates to: SFSKLSYGSITY*IFAKYSLGKSR Trigger: CCTGCTCTTTCCTAGACTGTACTTGGCAAAAATTCAATATGTAATGGAGCCATAGCTTAGTTTACTGAAACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR TCA 72 bp | TTCCTTTCCTTTCATCTATCAGGAATGTTTCTCAGTTaGCAAAATGACAGGCTTCAATTGGAGAAGACTCAA | + |
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Preference number: 3 (lower is better) Translates to: FLSFHLSGMFLS*QNDRLQLEKTQ Trigger: TTGAGTCTTCTCCAATTGAAGCCTGTCATTTTGTCAACTGAGAAACATTCCTGATAGATGAAAGGAAAGGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTGTACTTTAAATCTACAGACTTCAGGGTATTATCCCACAGACATAAACTGGCTCCATTACATATaGAATTTTTGCCAAGTACAG | + |
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Preference number: 3 (lower is better) Translates to: QTCTLNLQTSGYYPTDINWLHYI*NFCQVQ Trigger: CTGTACTTGGCAAAAATTCAATATGTAATGGAGCCA...GTTTATGTCTGTGGGATAATACCCTGAAGTCTGTAGATTTAAAGTACAAGTTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR TCA 72 bp | AATCTTTTCTCCATGACTTATATACCCACATTGTACTaGGGCAAGCAACTTAGAAACATGACTATAACTGCA | + |
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Preference number: 3 (lower is better) Translates to: NLFSMTYIPTLY*GKQLRNMTITA Trigger: TGCAGTTATAGTCATGTTTCTAAGTTGCTTGCCTCAGTACAATGTGGGTATATAAGTCATGGAGAAAAGATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR GCA 72 bp | TCAGGGTATTATCCCACAGACATAAACATCCTCCAATaGAAAACAGAGAAAGTTACATTGTCCACATATAAT | + |
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Preference number: 3 (lower is better) Translates to: SGYYPTDINILQ*KTEKVTLSTYN Trigger: ATTATATGTGGACAATGTAACTTTCTCTGTTTTGCATTGGAGGATGTTTATGTCTGTGGGATAATACCCTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| CDS-3UTR GCA 90 bp | CATTGTGGGAATAAGAGTCTCTCTCTCTTCTCTCTTCTCTCTCTCTCTCTCTCTTCATGCTTGCTGATTTaGCTGGGCTTCGGCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: HCGNKSLSLFSLLSLSLSSCLLI*LGFGFL Trigger: AAGGAAGCCGAAGCCCAGGCAAATCAGCAAGCATGA...AGAGAGAGAGAGAGAGAGAAGAGAGAAGAGAGAGAGACTCTTATTCCCACAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| CDS-3UTR TCA 90 bp | CAAACTTGTACTTTAAATCTACAGACTTCAGGGTATTATCCCACAGACATAAACGGCTTCGGCTTCCTTTaGACCAGGTGGTGCTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: QTCTLNLQTSGYYPTDINGFGFL*TRWCCQ Trigger: TTGACAGCACCACCTGGTTCAAAGGAAGCCGAAGCC...GTTTATGTCTGTGGGATAATACCCTGAAGTCTGTAGATTTAAAGTACAAGTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| CDS-3UTR CCA 90 bp | GGAGACAAGAGCCACTACTACTTCGTTCAGCAAACACCAAAAGAAAATATATCTATTGAAAATCTGAGGTaGCAAGGGGTACCCTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: GDKSHYYFVQQTPKENISIENLR*QGVPCG Trigger: TCCACAGGGTACCCCTTGCCACCTCAGATTTTCAAT...AGATATATTTTCTTTTGGTGTTTGCTGAACGAAGTAGTAGTGGCTCTTGTCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| CDS-3UTR TCA 90 bp | CAAACTTGTACTTTAAATCTACAGACTTCAGGGTATTATCCCACAGACATAAACCATTCATTGAAAATCTaGGGTGGCAAGGGGTACCCT | + |
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Preference number: 4 (lower is better) Translates to: QTCTLNLQTSGYYPTDINHSLKI*GGKGYP Trigger: AGGGTACCCCTTGCCACCTCAGATTTTCAATGAATG...GTTTATGTCTGTGGGATAATACCCTGAAGTCTGTAGATTTAAAGTACAAGTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| CDS-3UTR TCA 90 bp | CAAACTTGTACTTTAAATCTACAGACTTCAGGGTATTATCCCACAGACATAAACGGTACTGGCATTCATTaGAAATCTGAGGTGGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: QTCTLNLQTSGYYPTDINGTGIH*KSEVAR Trigger: CCTTGCCACCTCAGATTTTCAATGAATGCCAGTACC...GTTTATGTCTGTGGGATAATACCCTGAAGTCTGTAGATTTAAAGTACAAGTTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| CDS-3UTR GCA 90 bp | TCTGTGTTCTTTGCAAGGAAGGGCCAATTTAAAGTGAACTGCAATCTTTTCTCCAGAGCCAGAAGAAGATaGAATATATACACGGATCAC | + |
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Preference number: 4 (lower is better) Translates to: SVFFARKGQFKVNCNLFSRARRR*NIYTDH Trigger: GTGATCCGTGTATATATTGCATCTTCTTCTGGCTCT...GGAGAAAAGATTGCAGTTCACTTTAAATTGGCCCTTCCTTGCAAAGAACACAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR CAA 72 bp | ATAAACATCCTCCAATGCAAAACAGAGAAAGTTACATaGTCCACATATAATACTGCAGGTATTACCTGTAGC | + |
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Preference number: 4 (lower is better) Translates to: INILQCKTEKVT*STYNTAGITCS Trigger: GCTACAGGTAATACCTGCAGTATTATATGTGGACAATGTAACTTTCTCTGTTTTGCATTGGAGGATGTTTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| 3UTR CAA 72 bp | AAAAGGTACAATATCAACATCTTCTGGTTGAATGCTTaGGGTCTTGCTTATCTTCAAACTACTTCAAACGTT | + |
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Preference number: 4 (lower is better) Translates to: KRYNINIFWLNA*GLAYLQTTSNV Trigger: AACGTTTGAAGTAGTTTGAAGATAAGCAAGACCCAAAGCATTCAACCAGAAGATGTTGATATTGTACCTTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| CDS-3UTR CAA 90 bp | CAAACTTGTACTTTAAATCTACAGACTTCAGGGTATTATCCCACAGACATAAACGGGCTTCGGCTTCCTTaGAACCAGGTGGTGCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: QTCTLNLQTSGYYPTDINGLRLP*NQVVLS Trigger: TGACAGCACCACCTGGTTCAAAGGAAGCCGAAGCCC...GTTTATGTCTGTGGGATAATACCCTGAAGTCTGTAGATTTAAAGTACAAGTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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| CDS-3UTR CAA 90 bp | CAAACTTGTACTTTAAATCTACAGACTTCAGGGTATTATCCCACAGACATAAACGAAACAAAGCACATCTaGCTGTTTCTTCTTAATCGC | + |
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Preference number: 5 (lower is better) Translates to: QTCTLNLQTSGYYPTDINETKHI*LFLLNR Trigger: GCGATTAAGAAGAAACAGCAAGATGTGCTTTGTTTC...GTTTATGTCTGTGGGATAATACCCTGAAGTCTGTAGATTTAAAGTACAAGTTTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033598.9 |
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