Pregenerated sensors for SH3BGR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040666Ensembl transcript IDs: ENSMUST00000048770.16, ENSMUST00000129904.3, ENSMUST00000145069.3, ENSMUST00000157060.8, ENSMUST00000171181.9, ENSMUST00000233577.2, ENSMUST00000233818.2, ENSMUST00000233945.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCATCAATCTTTATTTATGATTGCTCTCTGGGAAGTGTTTTGTTCTaGAAGCCAAGCCTAAAACAAGCAGTACACAAAGAAATCCTTCTG | + |
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Preference number: 1 (lower is better) Translates to: ASIFIYDCSLGSVLF*KPSLKQAVHKEILL Trigger: CAGAAGGATTTCTTTGTGTACTGCTTGTTTTAGGCTTGGCTTTCAGAACAAAACACTTCCCAGAGAGCAATCATAAATAAAGATTGATGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048770.16 ENSMUST00000233577.2 ENSMUST00000233818.2 ENSMUST00000233945.2 |
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| 3UTR-3UTR CCA 90 bp | ACGTTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTGCAGTCTTCACATTCCGAGGGAAGGGTGCTaGCTTCCAGCCAAGTATTTC | + |
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Preference number: 2 (lower is better) Translates to: TLSKDQKFQAAYACSLHIPREGC*LPAKYF Trigger: GAAATACTTGGCTGGAAGCCAGCACCCTTCCCTCGG...AATGTGAAGACTGCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAACGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR-3UTR TCA 90 bp | AGGGTGCTGGCTTCCAGCCAAGTATTTCGTTGCGTTAATGGAGAAGAGAGAGTTATATTCTGGGAAAGTTaGAGCACCAGCCTGAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: RVLASSQVFRCVNGEERVIFWES*STSLKG Trigger: GCCTTTCAGGCTGGTGCTTCAACTTTCCCAGAATAT...AACTCTCTCTTCTCCATTAACGCAACGAAATACTTGGCTGGAAGCCAGCACCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR-3UTR TCA 90 bp | AGGAAACAAACGTTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTGCAGTCTCGTGTTGACACAGTaGGGTAGAGACCCACATGCA | + |
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Preference number: 2 (lower is better) Translates to: RKQTLSKDQKFQAAYACSLVLTQ*GRDPHA Trigger: TGCATGTGGGTCTCTACCTCACTGTGTCAACACGAG...ACTGCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAACGTTTGTTTCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR-3UTR TCA 90 bp | GTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGATCTCGTGTTGACACAGTaGGGTAGAGACCCACATGCA | + |
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Preference number: 2 (lower is better) Translates to: VHKEILLLCHRGETTPQDLVLTQ*GRDPHA Trigger: TGCATGTGGGTCTCTACCTCACTGTGTCAACACGAG...ATCTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR-3UTR TCA 90 bp | ACGTTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTGCAGTCTTCACATTATATTCTGGGAAAGTTaGAGCACCAGCCTGAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: TLSKDQKFQAAYACSLHIIFWES*STSLKG Trigger: GCCTTTCAGGCTGGTGCTTCAACTTTCCCAGAATAT...AATGTGAAGACTGCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAACGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGTCTACTTGTGCATAGCCAAGGAAACAAACGTTAAGCAAAGACCAAAAATTATGCACCTAGCTGTCTaGGAGGGCGTGAGTCCTCAG | + |
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Preference number: 2 (lower is better) Translates to: KVYLCIAKETNVKQRPKIMHLAV*EGVSPQ Trigger: CTGAGGACTCACGCCCTCCCAGACAGCTAGGTGCAT...AATTTTTGGTCTTTGCTTAACGTTTGTTTCCTTGGCTATGCACAAGTAGACCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR-3UTR GCA 90 bp | GTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGATGAGAAGGTCTACTTGTaGATAGCCAAGGAAACAAAC | + |
|
Preference number: 2 (lower is better) Translates to: VHKEILLLCHRGETTPQDEKVYL*IAKETN Trigger: GTTTGTTTCCTTGGCTATGCACAAGTAGACCTTCTC...ATCTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000048770.16 ENSMUST00000145069.3 ENSMUST00000233577.2 ENSMUST00000233818.2 ENSMUST00000233945.2 |
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| 3UTR TCA 72 bp | ATGCACCTAGCTGTCTGGGAGGGCGTGAGTCCTCAGTaGACCCAGGTGTGCCGAGGGAAGGGTGCTGGCTTC | + |
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Preference number: 3 (lower is better) Translates to: MHLAVWEGVSPQ*TQVCRGKGAGF Trigger: GAAGCCAGCACCCTTCCCTCGGCACACCTGGGTTCACTGAGGACTCACGCCCTCCCAGACAGCTAGGTGCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR-3UTR CAA 90 bp | CCAAGGAAACAAACGTTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTGCGATATTCTGGGAAAGTaGAAGCACCAGCCTGAAAGG | + |
|
Preference number: 3 (lower is better) Translates to: PRKQTLSKDQKFQAAYACDILGK*KHQPER Trigger: CCTTTCAGGCTGGTGCTTCAACTTTCCCAGAATATC...GCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAACGTTTGTTTCCTTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR GCA 72 bp | TTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTaGAGTCTTCACATTCAGCCTCGTGTTGACACAGTG | + |
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Preference number: 3 (lower is better) Translates to: LSKDQKFQAAYA*SLHIQPRVDTV Trigger: CACTGTGTCAACACGAGGCTGAATGTGAAGACTGCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR-3UTR CAA 90 bp | AGGAAACAAACGTTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTGCAGTGATATTCTGGGAAAGTaGAAGCACCAGCCTGAAAGG | + |
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Preference number: 3 (lower is better) Translates to: RKQTLSKDQKFQAAYACSDILGK*KHQPER Trigger: CCTTTCAGGCTGGTGCTTCAACTTTCCCAGAATATC...ACTGCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAACGTTTGTTTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR GCA 72 bp | TCCTGTTTGCAGAATATTAACGAGAAGGTCTACTTGTaGATAGCCAAGGAAACAAACGTTAAGCAAAGACCA | + |
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Preference number: 3 (lower is better) Translates to: SCLQNINEKVYL*IAKETNVKQRP Trigger: TGGTCTTTGCTTAACGTTTGTTTCCTTGGCTATGCACAAGTAGACCTTCTCGTTAATATTCTGCAAACAGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| 3UTR TCA 72 bp | TTTATTTATGATTGCTCTCTGGGAAGTGTTTTGTTCTaGAAGCCAAGCCTAAAACAAGCAGTACACAAAGAA | + |
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Preference number: 3 (lower is better) Translates to: FIYDCSLGSVLF*KPSLKQAVHKE Trigger: TTCTTTGTGTACTGCTTGTTTTAGGCTTGGCTTTCAGAACAAAACACTTCCCAGAGAGCAATCATAAATAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000048770.16 ENSMUST00000145069.3 ENSMUST00000233577.2 ENSMUST00000233818.2 ENSMUST00000233945.2 |
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| CDS-3UTR CCA 90 bp | CAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGATGCACCTAGCTGTCTaGGAGGGCGTGAGTCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: QYTKKSFCYVTEGKLRLKMHLAV*EGVSPQ Trigger: CTGAGGACTCACGCCCTCCCAGACAGCTAGGTGCAT...CTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145069.3 ENSMUST00000233577.2 ENSMUST00000233945.2 |
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| CDS-3UTR CCA 90 bp | AAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCATGCACCTAGCTGTCTaGGAGGGCGTGAGTCCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: KQYTKKSFCYVTEGKLRLMHLAV*EGVSPQ Trigger: CTGAGGACTCACGCCCTCCCAGACAGCTAGGTGCAT...GAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145069.3 ENSMUST00000233577.2 ENSMUST00000233945.2 |
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| CDS-3UTR CCA 90 bp | AAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCCCGAGGGAAGGGTGCTaGCTTCCAGCCAAGTATTTC | + |
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Preference number: 4 (lower is better) Translates to: KQYTKKSFCYVTEGKLRLPREGC*LPAKYF Trigger: GAAATACTTGGCTGGAAGCCAGCACCCTTCCCTCGG...GAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145069.3 ENSMUST00000233577.2 ENSMUST00000233945.2 |
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| CDS-3UTR CCA 90 bp | ACAAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCCCGAGGGAAGGGTGCTaGCTTCCAGCCAAGTATTTC | + |
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Preference number: 4 (lower is better) Translates to: TSSTQRNPSAMSQRGNYAPREGC*LPAKYF Trigger: GAAATACTTGGCTGGAAGCCAGCACCCTTCCCTCGG...GGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000145069.3 ENSMUST00000233577.2 ENSMUST00000233945.2 |
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| CDS-3UTR CCA 90 bp | AGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGAATGCACCTAGCTGTCTaGGAGGGCGTGAGTCCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: STQRNPSAMSQRGNYASRMHLAV*EGVSPQ Trigger: CTGAGGACTCACGCCCTCCCAGACAGCTAGGTGCAT...TCTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145069.3 ENSMUST00000233577.2 ENSMUST00000233945.2 |
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| CDS-3UTR TCA 90 bp | ACAAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCCTCGTGTTGACACAGTaGGGTAGAGACCCACATGCA | + |
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Preference number: 4 (lower is better) Translates to: TSSTQRNPSAMSQRGNYALVLTQ*GRDPHA Trigger: TGCATGTGGGTCTCTACCTCACTGTGTCAACACGAG...GGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145069.3 ENSMUST00000233577.2 ENSMUST00000233945.2 |
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| CDS-3UTR TCA 90 bp | AAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCCTCGTGTTGACACAGTaGGGTAGAGACCCACATGCA | + |
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Preference number: 4 (lower is better) Translates to: KQYTKKSFCYVTEGKLRLLVLTQ*GRDPHA Trigger: TGCATGTGGGTCTCTACCTCACTGTGTCAACACGAG...GAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145069.3 ENSMUST00000233577.2 ENSMUST00000233945.2 |
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| CDS-3UTR GCA 90 bp | ACGTTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTGCAGTCTTCACATTTGCTCCTTCCTCTGGTaGCTCTTCCGTCTCTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: TLSKDQKFQAAYACSLHICSFLW*LFRLSC Trigger: ACAGGAGAGACGGAAGAGGCACCAGAGGAAGGAGCA...AATGTGAAGACTGCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAACGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048770.16 |
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| CDS-3UTR CCA 90 bp | AGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGACCGAGGGAAGGGTGCTaGCTTCCAGCCAAGTATTTC | + |
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Preference number: 4 (lower is better) Translates to: STQRNPSAMSQRGNYASRPREGC*LPAKYF Trigger: GAAATACTTGGCTGGAAGCCAGCACCCTTCCCTCGG...TCTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000145069.3 ENSMUST00000233577.2 ENSMUST00000233945.2 |
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| CDS-3UTR CCA 90 bp | CAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGCTGCTACATCTCCATTaGGAAGGGAGGATGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: QYTKKSFCYVTEGKLRLKLLHLH*EGRMLP Trigger: AGGAAGCATCCTCCCTTCCCAATGGAGATGTAGCAG...CTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233945.2 |
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| CDS-3UTR TCA 90 bp | CAAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTATATTCTGGGAAAGTTaGAGCACCAGCCTGAAAGGC | + |
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Preference number: 4 (lower is better) Translates to: QAVHKEILLLCHRGETTPIFWES*STSLKG Trigger: GCCTTTCAGGCTGGTGCTTCAACTTTCCCAGAATAT...AGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233945.2 |
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| CDS-3UTR CCA 90 bp | AAGGTCTACTTGTGCATAGCCAAGGAAACAAACGTTAAGCAAAGACCAAAAATTCCCTGCTCCTTCCTCTaGTGCCTCTTCCGTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: KVYLCIAKETNVKQRPKIPCSFL*CLFRLS Trigger: GGAGAGACGGAAGAGGCACCAGAGGAAGGAGCAGGG...AATTTTTGGTCTTTGCTTAACGTTTGTTTCCTTGGCTATGCACAAGTAGACCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048770.16 |
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| CDS-3UTR CCA 90 bp | CTTCCAGCCAAGTATTTCGTTGCGTTAATGGAGAAGAGAGAGTTCAAATGTAGCCTGCTACATCTCCATTaGGAAGGGAGGATGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LPAKYFVALMEKREFKCSLLHLH*EGRMLP Trigger: AGGAAGCATCCTCCCTTCCCAATGGAGATGTAGCAG...GCTACATTTGAACTCTCTCTTCTCCATTAACGCAACGAAATACTTGGCTGGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048770.16 |
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| CDS-3UTR TCA 90 bp | CCAAGGAAACAAACGTTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTGCCTATGTCCAGCTCCTTaGAGTCTATTTTATTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: PRKQTLSKDQKFQAAYACLCPAP*SLFYWL Trigger: AAGCCAATAAAATAGACTTCAAGGAGCTGGACATAG...GCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAACGTTTGTTTCCTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| CDS-3UTR GCA 90 bp | CAAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTACTGTCCTCTTTCTGTaGCTCATTTTCTCCACTTTT | + |
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Preference number: 4 (lower is better) Translates to: QAVHKEILLLCHRGETTPTVLFL*LIFSTF Trigger: AAAAGTGGAGAAAATGAGGCACAGAAAGAGGACAGT...AGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000048770.16 ENSMUST00000145069.3 ENSMUST00000233945.2 |
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| CDS-3UTR GCA 90 bp | GATTCTTGGCATCAATCTTTATTTATGATTGCTCTCTGGGAAGTGTTTTGTTCTTGCTCCTTCCTCTGGTaGCTCTTCCGTCTCTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: DSWHQSLFMIALWEVFCSCSFLW*LFRLSC Trigger: ACAGGAGAGACGGAAGAGGCACCAGAGGAAGGAGCA...AGAACAAAACACTTCCCAGAGAGCAATCATAAATAAAGATTGATGCCAAGAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233945.2 |
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| CDS-3UTR TCA 90 bp | GTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGATCTATGTCCAGCTCCTTaGAGTCTATTTTATTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: VHKEILLLCHRGETTPQDLCPAP*SLFYWL Trigger: AAGCCAATAAAATAGACTTCAAGGAGCTGGACATAG...ATCTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 ENSMUST00000233945.2 |
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| CDS-3UTR CCA 90 bp | CTTCCAGCCAAGTATTTCGTTGCGTTAATGGAGAAGAGAGAGTTCAAATGTAGCTCTTCCTTCTTCTCTTaGGATTCAGAAAGCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LPAKYFVALMEKREFKCSSSFFS*DSESSP Trigger: TGGAGAGCTTTCTGAATCCCAAGAGAAGAAGGAAGA...GCTACATTTGAACTCTCTCTTCTCCATTAACGCAACGAAATACTTGGCTGGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048770.16 |
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| CDS-3UTR CCA 90 bp | CAAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTATATTCTTCTTCTCTTaGGATTCAGAAAGCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: QAVHKEILLLCHRGETTPIFFFS*DSESSP Trigger: TGGAGAGCTTTCTGAATCCCAAGAGAAGAAGAATAT...AGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145069.3 |
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| 3UTR CAA 72 bp | AGATCCTGTTTGCAGAATATTAACGAGAAGGTCTACTaGTGCATAGCCAAGGAAACAAACGTTAAGCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: RSCLQNINEKVY*CIAKETNVKQR Trigger: TCTTTGCTTAACGTTTGTTTCCTTGGCTATGCACAAGTAGACCTTCTCGTTAATATTCTGCAAACAGGATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| CDS-3UTR TCA 90 bp | AAGGTCTACTTGTGCATAGCCAAGGAAACAAACGTTAAGCAAAGACCAAAAATTCTATGTCCAGCTCCTTaGAGTCTATTTTATTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: KVYLCIAKETNVKQRPKILCPAP*SLFYWL Trigger: AAGCCAATAAAATAGACTTCAAGGAGCTGGACATAG...AATTTTTGGTCTTTGCTTAACGTTTGTTTCCTTGGCTATGCACAAGTAGACCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| CDS-3UTR GCA 90 bp | AAGGTCTACTTGTGCATAGCCAAGGAAACAAACGTTAAGCAAAGACCAAAAATTACTGTCCTCTTTCTGTaGCTCATTTTCTCCACTTTT | + |
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Preference number: 4 (lower is better) Translates to: KVYLCIAKETNVKQRPKITVLFL*LIFSTF Trigger: AAAAGTGGAGAAAATGAGGCACAGAAAGAGGACAGT...AATTTTTGGTCTTTGCTTAACGTTTGTTTCCTTGGCTATGCACAAGTAGACCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048770.16 |
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| CDS-3UTR CCA 90 bp | GATTCTTGGCATCAATCTTTATTTATGATTGCTCTCTGGGAAGTGTTTTGTTCTTCTTCCTTCTTCTCTTaGGATTCAGAAAGCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: DSWHQSLFMIALWEVFCSSSFFS*DSESSP Trigger: TGGAGAGCTTTCTGAATCCCAAGAGAAGAAGGAAGA...AGAACAAAACACTTCCCAGAGAGCAATCATAAATAAAGATTGATGCCAAGAATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233945.2 |
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| CDS-3UTR CAA 90 bp | GGAGGGCGTGAGTCCTCAGTGAACCCAGGTGTGCCGAGGGAAGGGTGCTGGCTTCTCTTCCTTCTTCTCTaGGGATTCAGACTTTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: GGRESSVNPGVPREGCWLLFLLL*GFRLCH Trigger: GTGACAAAGTCTGAATCCCAAGAGAAGAAGGAAGAG...AAGCCAGCACCCTTCCCTCGGCACACCTGGGTTCACTGAGGACTCACGCCCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233818.2 |
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| CDS CCA 90 bp | CTGTTCCCTCTGCAGCACCCTCTGCCTCTCCTGCTACATCTCCATTaGGAAGGGAGGATGCTTCCTCAGACTTTGTCACCTTTGACCCAG | + |
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Preference number: 5 (lower is better) Translates to: LFPLQHPLPLLLHLH*EGRMLPQTLSPLTQ Trigger: CTGGGTCAAAGGTGACAAAGTCTGAGGAAGCATCCTCCCTTCCCAATGGAGATGTAGCAGGAGAGGCAGAGGGTGCTGCAGAGGGAACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048770.16 ENSMUST00000129904.3 ENSMUST00000171181.9 |
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| CDS CCA 90 bp | TCCTTACCTCTGCAGCACCCTCTGCCTCTCCTGCTACATCTCCATTaGGAAGGGAGGATGCTTCCTCAGACTTTGTCACCTTTGACCCAG | + |
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Preference number: 5 (lower is better) Translates to: SLPLQHPLPLLLHLH*EGRMLPQTLSPLTQ Trigger: CTGGGTCAAAGGTGACAAAGTCTGAGGAAGCATCCTCCCTTCCCAATGGAGATGTAGCAGGAGAGGCAGAGGGTGCTGCAGAGGTAAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233945.2 |
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| CDS CCA 90 bp | TCTCCTGCCTCTTCTCCTTCCTCTGGTGCCTCTTCCTTCTTCTCTTaGGATTCAGACTTTGTCACCTTTGACCCAGGAGGGGGAGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: SPASSPSSGASSFFS*DSDFVTFDPGGGAR Trigger: TCTGGCTCCCCCTCCTGGGTCAAAGGTGACAAAGTCTGAATCCCAAGAGAAGAAGGAAGAGGCACCAGAGGAAGGAGAAGAGGCAGGAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233818.2 |
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| CDS GCA 90 bp | TATCTTCCCCGGGTCCCTTCTCTATCCTCAGAATGCCAAGGGCCCTaGTGTTTCCTAAGGAGCAGGTCTGCAGGTCTGAACTCATGTTAT | + |
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Preference number: 5 (lower is better) Translates to: YLPRVPSLSSECQGP*CFLRSRSAGLNSCY Trigger: ATAACATGAGTTCAGACCTGCAGACCTGCTCCTTAGGAAACAGCAGGGCCCTTGGCATTCTGAGGATAGAGAAGGGACCCGGGGAAGATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129904.3 |
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| CDS-3UTR CAA 90 bp | CAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGCCTGCTACATCTCCATaGGGAAGGGAGGATGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: QYTKKSFCYVTEGKLRLKPATSP*GREDAS Trigger: GGAAGCATCCTCCCTTCCCAATGGAGATGTAGCAGG...CTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233945.2 |
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| CDS-3UTR CAA 90 bp | AAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCCCTGCTACATCTCCATaGGGAAGGGAGGATGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: KQYTKKSFCYVTEGKLRLPATSP*GREDAS Trigger: GGAAGCATCCTCCCTTCCCAATGGAGATGTAGCAGG...GAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233945.2 |
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| CDS CCA 90 bp | TCTTCTCCCTCTTCTCCGTCTTCTCCCTCTTCTTCCTTCTTCTCTTaGGATTCAGAAAGCTCTCCAGTGTCTTCACTGTCCTCTTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: SSPSSPSSPSSSFFS*DSESSPVSSLSSFC Trigger: ACAGAAAGAGGACAGTGAAGACACTGGAGAGCTTTCTGAATCCCAAGAGAAGAAGGAAGAAGAGGGAGAAGACGGAGAAGAGGGAGAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048770.16 ENSMUST00000157060.8 ENSMUST00000171181.9 ENSMUST00000233945.2 |
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| CDS-3UTR CAA 90 bp | CAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGCTCATCCACTTTCTGTaGTCTTCATCCCCAGCTATG | + |
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Preference number: 5 (lower is better) Translates to: QYTKKSFCYVTEGKLRLKLIHFL*SSSPAM Trigger: CATAGCTGGGGATGAAGACAACAGAAAGTGGATGAG...CTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 ENSMUST00000233945.2 |
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| CDS-3UTR CAA 90 bp | CAAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCTCATCCACTTTCTGTaGTCTTCATCCCCAGCTATG | + |
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Preference number: 5 (lower is better) Translates to: QAVHKEILLLCHRGETTPLIHFL*SSSPAM Trigger: CATAGCTGGGGATGAAGACAACAGAAAGTGGATGAG...AGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 ENSMUST00000233945.2 |
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| CDS-3UTR CAA 90 bp | ACAAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCCTCATCCACTTTCTGTaGTCTTCATCCCCAGCTATG | + |
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Preference number: 5 (lower is better) Translates to: TSSTQRNPSAMSQRGNYALIHFL*SSSPAM Trigger: CATAGCTGGGGATGAAGACAACAGAAAGTGGATGAG...GGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 ENSMUST00000233945.2 |
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| CDS-3UTR CAA 90 bp | CAAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTGATATTCTGGGAAAGTaGAAGCACCAGCCTGAAAGG | + |
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Preference number: 5 (lower is better) Translates to: QAVHKEILLLCHRGETTPDILGK*KHQPER Trigger: CCTTTCAGGCTGGTGCTTCAACTTTCCCAGAATATC...AGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233945.2 |
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| CDS-3UTR CAA 90 bp | ACGTTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTGCAGTCTTCACATTCTTGGGATTCAGACTTaGTCACCTTTGACCCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: TLSKDQKFQAAYACSLHILGIQT*SPLTQE Trigger: CTCCTGGGTCAAAGGTGACAAAGTCTGAATCCCAAG...AATGTGAAGACTGCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAACGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233818.2 |
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| CDS CCA 90 bp | AGAGAGTTCAAATGTAGCCTCGTGGCTCGGATATTCTTCTTCTCTTaGGATTCAGAAAGCTCTCCAGTGTCTTCACTGTCCTCTTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: REFKCSLVARIFFFS*DSESSPVSSLSSFC Trigger: ACAGAAAGAGGACAGTGAAGACACTGGAGAGCTTTCTGAATCCCAAGAGAAGAAGAATATCCGAGCCACGAGGCTACATTTGAACTCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145069.3 |
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| CDS-3UTR CAA 90 bp | AAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCTTCTTCCTTCTTCTCTaGGGATTCAGAAAGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: KQYTKKSFCYVTEGKLRLFFLLL*GFRKLS Trigger: GGAGAGCTTTCTGAATCCCAAGAGAAGAAGGAAGAA...GAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233945.2 |
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| CDS-3UTR CAA 90 bp | AGGGTGCTGGCTTCCAGCCAAGTATTTCGTTGCGTTAATGGAGAAGAGAGAGTTTTGAAGTCTATTTTATaGGCTTCCAAAAAGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: RVLASSQVFRCVNGEERVLKSIL*ASKKPT Trigger: GGTGGGCTTTTTGGAAGCCAATAAAATAGACTTCAA...AACTCTCTCTTCTCCATTAACGCAACGAAATACTTGGCTGGAAGCCAGCACCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| CDS-3UTR CAA 90 bp | GAAACAAACGTTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTGCAGTCTTTCTTCCTTCTTCTCTaGGGATTCAGAAAGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: ETNVKQRPKISGSVRVQSFFLLL*GFRKLS Trigger: GGAGAGCTTTCTGAATCCCAAGAGAAGAAGGAAGAA...AGACTGCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAACGTTTGTTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048770.16 |
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| CDS-3UTR CAA 90 bp | AAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCGATATTCTTCTTCTCTaGGGATTCAGAAAGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: KQYTKKSFCYVTEGKLRLDILLL*GFRKLS Trigger: GGAGAGCTTTCTGAATCCCAAGAGAAGAAGAATATC...GAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145069.3 |
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| CDS-3UTR CAA 90 bp | ACAAGCAGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTTGAAGTCTATTTTATaGGCTTCCAAAAAGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: TSSTQRNPSAMSQRGNYALKSIL*ASKKPT Trigger: GGTGGGCTTTTTGGAAGCCAATAAAATAGACTTCAA...GGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACTGCTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 ENSMUST00000233945.2 |
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| CDS-3UTR CAA 90 bp | AGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGAGCTATGTCCAGCTCCTaGAAGTCTATTTTATTGGCT | + |
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Preference number: 5 (lower is better) Translates to: STQRNPSAMSQRGNYASRAMSSS*KSILLA Trigger: AGCCAATAAAATAGACTTCAAGGAGCTGGACATAGC...TCTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 ENSMUST00000233945.2 |
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| CDS-3UTR CAA 90 bp | GAAACAAACGTTAAGCAAAGACCAAAAATTTCAGGCAGCGTACGCGTGCAGTCTGCTATGTCCAGCTCCTaGAAGTCTATTTTATTGGCT | + |
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Preference number: 5 (lower is better) Translates to: ETNVKQRPKISGSVRVQSAMSSS*KSILLA Trigger: AGCCAATAAAATAGACTTCAAGGAGCTGGACATAGC...AGACTGCACGCGTACGCTGCCTGAAATTTTTGGTCTTTGCTTAACGTTTGTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 |
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| CDS-3UTR CAA 90 bp | AGTACACAAAGAAATCCTTCTGCTATGTCACAGAGGGGAAACTACGCCTCAAGATTGAAGTCTATTTTATaGGCTTCCAAAAAGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: STQRNPSAMSQRGNYASRLKSIL*ASKKPT Trigger: GGTGGGCTTTTTGGAAGCCAATAAAATAGACTTCAA...TCTTGAGGCGTAGTTTCCCCTCTGTGACATAGCAGAAGGATTTCTTTGTGTACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000048770.16 ENSMUST00000233818.2 ENSMUST00000233945.2 |
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| CDS GCA 72 bp | CGGGTCCCTTCTCTATCCTCAGAATGCCAAGGGCCCTaGTGTTTCCTAAGGAGCAGGTCTGCAGGTCTGAAC | + |
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Preference number: 6 (lower is better) Translates to: RVPSLSSECQGP*CFLRSRSAGLN Trigger: GTTCAGACCTGCAGACCTGCTCCTTAGGAAACAGCAGGGCCCTTGGCATTCTGAGGATAGAGAAGGGACCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129904.3 |
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| CDS CCA 72 bp | CTGCAGCACCCTCTGCCTCTCCTGCTACATCTCCATTaGGAAGGGAGGATGCTTCCTCAGACTTTGTCACCT | + |
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Preference number: 6 (lower is better) Translates to: LQHPLPLLLHLH*EGRMLPQTLSP Trigger: AGGTGACAAAGTCTGAGGAAGCATCCTCCCTTCCCAATGGAGATGTAGCAGGAGAGGCAGAGGGTGCTGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048770.16 ENSMUST00000129904.3 ENSMUST00000171181.9 ENSMUST00000233945.2 |
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| CDS CAA 72 bp | TCTGCAGCACCCTCTGCCTCTCCTGCTACATCTCCATaGGGAAGGGAGGATGCTTCCTCAGACTTTGTCACC | + |
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Preference number: 6 (lower is better) Translates to: SAAPSASPATSP*GREDASSDFVT Trigger: GGTGACAAAGTCTGAGGAAGCATCCTCCCTTCCCAATGGAGATGTAGCAGGAGAGGCAGAGGGTGCTGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048770.16 ENSMUST00000129904.3 ENSMUST00000171181.9 ENSMUST00000233945.2 |
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| CDS CAA 90 bp | TCTGTTCCCTCTGCAGCACCCTCTGCCTCTCCTGCTACATCTCCATaGGGAAGGGAGGATGCTTCCTCAGACTTTGTCACCTTTGACCCA | + |
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Preference number: 6 (lower is better) Translates to: SVPSAAPSASPATSP*GREDASSDFVTFDP Trigger: TGGGTCAAAGGTGACAAAGTCTGAGGAAGCATCCTCCCTTCCCAATGGAGATGTAGCAGGAGAGGCAGAGGGTGCTGCAGAGGGAACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048770.16 ENSMUST00000129904.3 ENSMUST00000171181.9 |
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| CDS CAA 90 bp | CTCCTTACCTCTGCAGCACCCTCTGCCTCTCCTGCTACATCTCCATaGGGAAGGGAGGATGCTTCCTCAGACTTTGTCACCTTTGACCCA | + |
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Preference number: 6 (lower is better) Translates to: LLTSAAPSASPATSP*GREDASSDFVTFDP Trigger: TGGGTCAAAGGTGACAAAGTCTGAGGAAGCATCCTCCCTTCCCAATGGAGATGTAGCAGGAGAGGCAGAGGGTGCTGCAGAGGTAAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233945.2 |
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| CDS CAA 72 bp | TGGGAAGGGAGGATGCTTCCTCAGACTTTGTCACCTTaGACCCAGGAGGGGGAGCCAGACCAAGGAATGAAT | + |
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Preference number: 6 (lower is better) Translates to: WEGRMLPQTLSP*TQEGEPDQGMN Trigger: ATTCATTCCTTGGTCTGGCTCCCCCTCCTGGGTCAAAGGTGACAAAGTCTGAGGAAGCATCCTCCCTTCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000048770.16 ENSMUST00000129904.3 ENSMUST00000171181.9 ENSMUST00000233945.2 |
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| CDS CAA 72 bp | CTGGTGCCTCTTCCTTCTTCTCTTGGGATTCAGACTTaGTCACCTTTGACCCAGGAGGGGGAGCCAGACCAA | + |
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Preference number: 6 (lower is better) Translates to: LVPLPSSLGIQT*SPLTQEGEPDQ Trigger: TTGGTCTGGCTCCCCCTCCTGGGTCAAAGGTGACAAAGTCTGAATCCCAAGAGAAGAAGGAAGAGGCACCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233818.2 |
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| CDS GCA 72 bp | ATCTTCCCCTTCTCCTGCCTCTTCTCCTTCCTCTGGTaGCTCTTCCTTCTTCTCTTGGGATTCAGACTTTGT | + |
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Preference number: 6 (lower is better) Translates to: IFPFSCLFSFLW*LFLLLLGFRLC Trigger: ACAAAGTCTGAATCCCAAGAGAAGAAGGAAGAGGCACCAGAGGAAGGAGAAGAGGCAGGAGAAGGGGAAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233818.2 |
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| CDS CCA 72 bp | AGAATCTTCCCCTTCTCCTGCCTCTTCTCCTTCCTCTaGTGCCTCTTCCTTCTTCTCTTGGGATTCAGACTT | + |
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Preference number: 6 (lower is better) Translates to: RIFPFSCLFSFL*CLFLLLLGFRL Trigger: AAGTCTGAATCCCAAGAGAAGAAGGAAGAGGCACCAGAGGAAGGAGAAGAGGCAGGAGAAGGGGAAGATTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233818.2 |
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| CDS CAA 72 bp | CTTCCTTCTTCTCTTGGGATTCAGACTTTGTCACCTTaGACCCAGGAGGGGGAGCCAGACCAAGGAATGAAT | + |
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Preference number: 6 (lower is better) Translates to: LPSSLGIQTLSP*TQEGEPDQGMN Trigger: ATTCATTCCTTGGTCTGGCTCCCCCTCCTGGGTCAAAGGTGACAAAGTCTGAATCCCAAGAGAAGAAGGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233818.2 |
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| CDS CAA 90 bp | CTCTTCTCCCTCTTCTCCGTCTTCTCCCTCTTCTTCCTTCTTCTCTaGGGATTCAGAAAGCTCTCCAGTGTCTTCACTGTCCTCTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: LFSLFSVFSLFFLLL*GFRKLSSVFTVLFL Trigger: CAGAAAGAGGACAGTGAAGACACTGGAGAGCTTTCTGAATCCCAAGAGAAGAAGGAAGAAGAGGGAGAAGACGGAGAAGAGGGAGAAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048770.16 ENSMUST00000157060.8 ENSMUST00000171181.9 ENSMUST00000233945.2 |
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