Pregenerated sensors for SH2D1B2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073494Ensembl transcript IDs: ENSMUST00000097470.4, ENSMUST00000162752.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTGGAGCTTCTTGAGGAGTGTGCCAGAAGGCAGGCGTCTGAGAAATaGCTCCTCCAAGGCTGCAGAACAGATCTTGCTATCCCAATCAGA | + |
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Preference number: 1 (lower is better) Translates to: LELLEECARRQASEK*LLQGCRTDLAIPIR Trigger: TCTGATTGGGATAGCAAGATCTGTTCTGCAGCCTTGGAGGAGTCATTTCTCAGACGCCTGCCTTCTGGCACACTCCTCAAGAAGCTCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR GCA 90 bp | CAACCTCCATCAGGACCACGACCTCACAGATGGGGACAACATGTTTaGTTCCTCTCAGTATCCTTAAATCCTGATCCTGCTGCTCAGACC | + |
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Preference number: 1 (lower is better) Translates to: QPPSGPRPHRWGQHV*FLSVSLNPDPAAQT Trigger: GGTCTGAGCAGCAGGATCAGGATTTAAGGATACTGAGAGGAAGCAAACATGTTGTCCCCATCTGTGAGGTCGTGGTCCTGATGGAGGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR GCA 90 bp | GAGTCATTATTCAGGAACTGGAGCTCATGTGAAAAAGCCTGTAGTTaGAGGGTGGGTCACAACCTCCATCAGGACCACGACCTCACAGAT | + |
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Preference number: 1 (lower is better) Translates to: ESLFRNWSSCEKACS*RVGHNLHQDHDLTD Trigger: ATCTGTGAGGTCGTGGTCCTGATGGAGGTTGTGACCCACCCTGCAACTACAGGCTTTTTCACATGAGCTCCAGTTCCTGAATAATGACTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CCA 90 bp | TTGCAGGGTGGGTCACAACCTCCATCAGGACCACGACCTCACAGATaGGGACAACATGTTTGCTTCCTCTCAGTATCCTTAAATCCTGAT | + |
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Preference number: 1 (lower is better) Translates to: LQGGSQPPSGPRPHR*GQHVCFLSVSLNPD Trigger: ATCAGGATTTAAGGATACTGAGAGGAAGCAAACATGTTGTCCCCATCTGTGAGGTCGTGGTCCTGATGGAGGTTGTGACCCACCCTGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR TCA 90 bp | TTTTTCCACTTCACTTCCCATTGTCCTGTCGGAAGTTGTCAACCATaGAGGAATGAGGGGAGCTGCCTCTATCCAGACAGGAGATTGGGT | + |
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Preference number: 1 (lower is better) Translates to: FFHFTSHCPVGSCQP*RNEGSCLYPDRRLG Trigger: ACCCAATCTCCTGTCTGGATAGAGGCAGCTCCCCTCATTCCTTCATGGTTGACAACTTCCGACAGGACAATGGGAAGTGAAGTGGAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CCA 90 bp | AACCATGAAGGAATGAGGGGAGCTGCCTCTATCCAGACAGGAGATTaGGTTATGGCTGTCCAATTTCAAGGTAGGGGAGTAAGAGGTAAG | + |
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Preference number: 1 (lower is better) Translates to: NHEGMRGAASIQTGD*VMAVQFQGRGVRGK Trigger: CTTACCTCTTACTCCCCTACCTTGAAATTGGACAGCCATAACCCAATCTCCTGTCTGGATAGAGGCAGCTCCCCTCATTCCTTCATGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR TCA 90 bp | CAGTCTTCTCGCTCCTGGACAGAAGCCGCTTCTCATTATTGGGTTTaGAAGATGAACCACCATTCCTTGACCTGGCGTTTTAAATTTGGA | + |
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Preference number: 1 (lower is better) Translates to: QSSRSWTEAASHYWV*KMNHHSLTWRFKFG Trigger: TCCAAATTTAAAACGCCAGGTCAAGGAATGGTGGTTCATCTTTCAAACCCAATAATGAGAAGCGGCTTCTGTCCAGGAGCGAGAAGACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097470.4 |
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| 3UTR CCA 90 bp | CAAGGCTGCAGAACAGATCTTGCTATCCCAATCAGAGGATCTCAGTaGCTCACTAGAAATTGGCATTTTAGATTCACACTTGCAGATGTG | + |
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Preference number: 1 (lower is better) Translates to: QGCRTDLAIPIRGSQ*LTRNWHFRFTLADV Trigger: CACATCTGCAAGTGTGAATCTAAAATGCCAATTTCTAGTGAGCCACTGAGATCCTCTGATTGGGATAGCAAGATCTGTTCTGCAGCCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CCA 90 bp | ATATGTTCAAATACATACATGTGGAGGATATCAGAGCTTAGAAAGTaGACTATGAGTCAGGAGGAAGAGTGGGAAGAGTGCAAACGGGGA | + |
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Preference number: 1 (lower is better) Translates to: ICSNTYMWRISELRK*TMSQEEEWEECKRG Trigger: TCCCCGTTTGCACTCTTCCCACTCTTCCTCCTGACTCATAGTCCACTTTCTAAGCTCTGATATCCTCCACATGTATGTATTTGAACATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR TCA 90 bp | AGAAATATTTTTAGTCACATTTACCAGAAGGCAGAGCTAGCAAAGTaGTGGCTGCATATGTGGAATTGGGATCAGGAAAACTGTTGCCAG | + |
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Preference number: 1 (lower is better) Translates to: RNIFSHIYQKAELAK*WLHMWNWDQENCCQ Trigger: CTGGCAACAGTTTTCCTGATCCCAATTCCACATATGCAGCCATCACTTTGCTAGCTCTGCCTTCTGGTAAATGTGACTAAAAATATTTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCTGGGCACAGGAGGGTGCCAGCAATGTGGGACAGATGGAGCAGGTCAAGTGTGCAGATGTGGCAGCTaGGAGCAGAGCCATCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: SLGTGGCQQCGTDGAGQVCRCGS*EQSHLS Trigger: GGAGAGATGGCTCTGCTCTCAGCTGCCACATCTGCA...CACTTGACCTGCTCCATCTGTCCCACATTGCTGGCACCCTCCTGTGCCCAGAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGGCAGGCGTCTGAGAAATGACTCCTCCAAGGCTGCAGAACAGATCTTGCTATCACACTTGCAGATGTaGCAGCTGAGAGCAGAGCCA | + |
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Preference number: 2 (lower is better) Translates to: EGRRLRNDSSKAAEQILLSHLQM*QLRAEP Trigger: TGGCTCTGCTCTCAGCTGCCACATCTGCAAGTGTGA...TAGCAAGATCTGTTCTGCAGCCTTGGAGGAGTCATTTCTCAGACGCCTGCCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGAAGAGTGGGAAGAGTGCAAACGGGGAAGGGGGAACAGAGAAGGCAGGGCTGCATATGTGGAATTaGGATCAGGAAAACTGTTGC | + |
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Preference number: 2 (lower is better) Translates to: RRKSGKSANGEGGTEKAGLHMWN*DQENCC Trigger: GCAACAGTTTTCCTGATCCCAATTCCACATATGCAG...CCCTGCCTTCTCTGTTCCCCCTTCCCCGTTTGCACTCTTCCCACTCTTCCTCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CAA 90 bp | AGCAAAGTGATGGCTGCATATGTGGAATTGGGATCAGGAAAACTGTaGCCAGAGGAATGGATGGGTGTCTGGCAGGAGGTCACCCTTAGA | + |
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Preference number: 2 (lower is better) Translates to: SKVMAAYVELGSGKL*PEEWMGVWQEVTLR Trigger: TCTAAGGGTGACCTCCTGCCAGACACCCATCCATTCCTCTGGCAACAGTTTTCCTGATCCCAATTCCACATATGCAGCCATCACTTTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCTGGGCACAGGAGGGTGCCAGCAATGTGGGACAGATGGAGCAGGTCAAGTGCAGATAGAAAAATGTTaGAGTGACACCCATTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: SLGTGGCQQCGTDGAGQVQIEKC*SDTHFS Trigger: AGAGAAATGGGTGTCACTCCAACATTTTTCTATCTG...CACTTGACCTGCTCCATCTGTCCCACATTGCTGGCACCCTCCTGTGCCCAGAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR TCA 90 bp | AAACCCCCAGAGTATGACTTACAGATAGAAAAATGTTGGAGTGACACCCATTTCCAGGCGTCTGAGAAATaGCTCCTCCAAGGCTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: KPPEYDLQIEKCWSDTHFQASEK*LLQGCR Trigger: TCTGCAGCCTTGGAGGAGTCATTTCTCAGACGCCTG...GAAATGGGTGTCACTCCAACATTTTTCTATCTGTAAGTCATACTCTGGGGGTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR TCA 90 bp | GAGAAAGGGAACATGAATAGTGGAAGAATAATCTCTGGTGTACTCTGTCAGTATGGCTTTGGAGCTTCTTaGGGAGTGTGCCAGAAGGCA | + |
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Preference number: 2 (lower is better) Translates to: EKGNMNSGRIISGVLCQYGFGAS*GVCQKA Trigger: TGCCTTCTGGCACACTCCTCAAGAAGCTCCAAAGCC...ATACTGACAGAGTACACCAGAGATTATTCTTCCACTATTCATGTTCCCTTTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR TCA 90 bp | ACGCTAAGCAAGTTCTCGACCATTGAGTTACATGTCCATTCAGCCTTTAGTTTAGGAAGTTGTCAACCATaGAGGAATGAGGGGAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: TLSKFSTIELHVHSAFSLGSCQP*RNEGSC Trigger: GCAGCTCCCCTCATTCCTTCATGGTTGACAACTTCC...TAAACTAAAGGCTGAATGGACATGTAACTCAATGGTCGAGAACTTGCTTAGCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CAA 90 bp | AACCAGGCCTTAATTAACCTCTGTTTATTTTACATATGCTCAGGATaGAACCCTGGGGCGTTTGCACACGCTAAGCAAGTTCTCGACCAT | + |
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Preference number: 2 (lower is better) Translates to: NQALINLCLFYICSG*NPGAFAHAKQVLDH Trigger: ATGGTCGAGAACTTGCTTAGCGTGTGCAAACGCCCCAGGGTTCAATCCTGAGCATATGTAAAATAAACAGAGGTTAATTAAGGCCTGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR TCA 90 bp | AGCCATCTCTCCTCTAGCTTGCTTTGTCCAATGTCCTTGTCTTCAAGGCAAGACTCTCATTATTGGGTTTaGAAGATGAACCACCATTCC | + |
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Preference number: 2 (lower is better) Translates to: SHLSSSLLCPMSLSSRQDSHYWV*KMNHHS Trigger: GGAATGGTGGTTCATCTTTCAAACCCAATAATGAGA...GTCTTGCCTTGAAGACAAGGACATTGGACAAAGCAAGCTAGAGGAGAGATGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097470.4 |
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| 3UTR-3UTR TCA 90 bp | ATGTGGGACAGATGGAGCAGGTCAAGTGAAGGTCAAGAAAGAAGAAAGAATCAGCGGACTAGCACAAGTTaGAGAGAAAGGGAACATGAA | + |
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Preference number: 2 (lower is better) Translates to: MWDRWSRSSEGQERRKNQRTSTS*REREHE Trigger: TTCATGTTCCCTTTCTCTTCAACTTGTGCTAGTCCG...CTGATTCTTTCTTCTTTCTTGACCTTCACTTGACCTGCTCCATCTGTCCCACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR CCA 90 bp | GGCAGAGCTAGCAAAGTGATGGCTGCATATGTGGAATTGGGATCAGGAAAACTGTCATTATTCAGGAACTaGAGCTCATGTGAAAAAGCC | + |
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Preference number: 2 (lower is better) Translates to: GRASKVMAAYVELGSGKLSLFRN*SSCEKA Trigger: GGCTTTTTCACATGAGCTCCAGTTCCTGAATAATGA...CAGTTTTCCTGATCCCAATTCCACATATGCAGCCATCACTTTGCTAGCTCTGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGATAACTCAGCCAGTCCTTTAGAAAAATGCTTTCAGTCCTTAATTCCTATGGAAGAGTGGGAAGAGTaGAAACGGGGAAGGGGGAAC | + |
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Preference number: 2 (lower is better) Translates to: KDNSASPLEKCFQSLIPMEEWEE*KRGRGN Trigger: GTTCCCCCTTCCCCGTTTGCACTCTTCCCACTCTTC...CATAGGAATTAAGGACTGAAAGCATTTTTCTAAAGGACTGGCTGAGTTATCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR CCA 90 bp | GAGAAAGGGAACATGAATAGTGGAAGAATAATCTCTGGTGTACTCTGTCAGTATCAGGAGATTGGGTTATaGCTGTCCAATTTCAAGGTA | + |
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Preference number: 2 (lower is better) Translates to: EKGNMNSGRIISGVLCQYQEIGL*LSNFKV Trigger: TACCTTGAAATTGGACAGCCATAACCCAATCTCCTG...ATACTGACAGAGTACACCAGAGATTATTCTTCCACTATTCATGTTCCCTTTCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGATAACTCAGCCAGTCCTTTAGAAAAATGCTTTCAGTCCTTAATTCCTATGTCAGAGCTTAGAAAGTaGACTATGAGTCAGGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: KDNSASPLEKCFQSLIPMSELRK*TMSQEE Trigger: TTCCTCCTGACTCATAGTCCACTTTCTAAGCTCTGA...CATAGGAATTAAGGACTGAAAGCATTTTTCTAAAGGACTGGCTGAGTTATCTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CAA 90 bp | AGGAATAGAACCACCCAAATGAGAACATCTTTAAATAGTCCCACATaGGTACAGATATGTGATGAACGTACAGCATTCACACAAAAAGAT | + |
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Preference number: 2 (lower is better) Translates to: RNRTTQMRTSLNSPT*VQICDERTAFTQKD Trigger: ATCTTTTTGTGTGAATGCTGTACGTTCATCACATATCTGTACCAATGTGGGACTATTTAAAGATGTTCTCATTTGGGTGGTTCTATTCCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CCA 72 bp | TCAGGAAAACTGTTGCCAGAGGAATGGATGGGTGTCTaGCAGGAGGTCACCCTTAGAAGAGACCGGACTAGC | + |
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Preference number: 3 (lower is better) Translates to: SGKLLPEEWMGV*QEVTLRRDRTS Trigger: GCTAGTCCGGTCTCTTCTAAGGGTGACCTCCTGCCAGACACCCATCCATTCCTCTGGCAACAGTTTTCCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR TCA 72 bp | CTTGAGGAGTGTGCCAGAAGGCAGGCGTCTGAGAAATaGCTCCTCCAAGGCTGCAGAACAGATCTTGCTATC | + |
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Preference number: 3 (lower is better) Translates to: LEECARRQASEK*LLQGCRTDLAI Trigger: GATAGCAAGATCTGTTCTGCAGCCTTGGAGGAGTCATTTCTCAGACGCCTGCCTTCTGGCACACTCCTCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR TCA 72 bp | CCATTGTCCTGTCGGAAGTTGTCAACCATGAAGGAATaGGGGGAGCTGCCTCTATCCAGACAGGAGATTGGG | + |
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Preference number: 3 (lower is better) Translates to: PLSCRKLSTMKE*GELPLSRQEIG Trigger: CCCAATCTCCTGTCTGGATAGAGGCAGCTCCCCTCATTCCTTCATGGTTGACAACTTCCGACAGGACAATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR GCA 72 bp | GTGGCAGCTGAGAGCAGAGCCATCTCTCCTCTAGCTTaGTTTGTCCAATGTCCTTGTCTTCAAGGCAAGACG | + |
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Preference number: 3 (lower is better) Translates to: VAAESRAISPLA*FVQCPCLQGKT Trigger: CGTCTTGCCTTGAAGACAAGGACATTGGACAAAGCAAGCTAGAGGAGAGATGGCTCTGCTCTCAGCTGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097470.4 |
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| 3UTR CCA 72 bp | TCTGGGCACAGGAGGGTGCCAGCAATGTGGGACAGATaGAGCAGGTCAAGTGAAGGTCAAGAAAGAAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: SGHRRVPAMWDR*SRSSEGQERRK Trigger: CTTTCTTCTTTCTTGACCTTCACTTGACCTGCTCCATCTGTCCCACATTGCTGGCACCCTCCTGTGCCCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR TCA 72 bp | TTCACTTCCCATTGTCCTGTCGGAAGTTGTCAACCATaGAGGAATGAGGGGAGCTGCCTCTATCCAGACAGG | + |
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Preference number: 3 (lower is better) Translates to: FTSHCPVGSCQP*RNEGSCLYPDR Trigger: CCTGTCTGGATAGAGGCAGCTCCCCTCATTCCTTCATGGTTGACAACTTCCGACAGGACAATGGGAAGTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CCA 72 bp | GTGGAATTGGGATCAGGAAAACTGTTGCCAGAGGAATaGATGGGTGTCTGGCAGGAGGTCACCCTTAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: VELGSGKLLPEE*MGVWQEVTLRR Trigger: TCTTCTAAGGGTGACCTCCTGCCAGACACCCATCCATTCCTCTGGCAACAGTTTTCCTGATCCCAATTCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR TCA 72 bp | CGCTCCTGGACAGAAGCCGCTTCTCATTATTGGGTTTaGAAGATGAACCACCATTCCTTGACCTGGCGTTTT | + |
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Preference number: 3 (lower is better) Translates to: RSWTEAASHYWV*KMNHHSLTWRF Trigger: AAAACGCCAGGTCAAGGAATGGTGGTTCATCTTTCAAACCCAATAATGAGAAGCGGCTTCTGTCCAGGAGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097470.4 |
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| 3UTR TCA 72 bp | GGTGCCAGCAATGTGGGACAGATGGAGCAGGTCAAGTaGAGGTCAAGAAAGAAGAAAGAATCAGCCACATGT | + |
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Preference number: 3 (lower is better) Translates to: GASNVGQMEQVK*RSRKKKESATC Trigger: ACATGTGGCTGATTCTTTCTTCTTTCTTGACCTTCACTTGACCTGCTCCATCTGTCCCACATTGCTGGCACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR GCA 72 bp | TCAGGACCACGACCTCACAGATGGGGACAACATGTTTaGTTCCTCTCAGTATCCTTAAATCCTGATCCTGCT | + |
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Preference number: 3 (lower is better) Translates to: SGPRPHRWGQHV*FLSVSLNPDPA Trigger: AGCAGGATCAGGATTTAAGGATACTGAGAGGAAGCAAACATGTTGTCCCCATCTGTGAGGTCGTGGTCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGAGAGCAGAGCCATCTCTCCTCTAGCTTGCTTTGTCCAATGTCCTTGTCTTAGCCGCTTCTCATTATaGGGTTTGAAAGATGAACCA | + |
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Preference number: 3 (lower is better) Translates to: AESRAISPLACFVQCPCLSRFSL*GLKDEP Trigger: TGGTTCATCTTTCAAACCCAATAATGAGAAGCGGCT...AAGACAAGGACATTGGACAAAGCAAGCTAGAGGAGAGATGGCTCTGCTCTCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097470.4 |
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| 3UTR-3UTR CAA 90 bp | AGAGGAACTCTGCAAAGTAGTCAGGTAAGGGCAGGCAAAGGCATGAAACTGAGGATTTTAGATTCACACTaGCAGATGTGGCAGCTGAGA | + |
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Preference number: 3 (lower is better) Translates to: RGTLQSSQVRAGKGMKLRILDSH*QMWQLR Trigger: TCTCAGCTGCCACATCTGCAAGTGTGAATCTAAAAT...CCTCAGTTTCATGCCTTTGCCTGCCCTTACCTGACTACTTTGCAGAGTTCCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CCA 72 bp | ATCCCAATCAGAGGATCTCAGTGGCTCACTAGAAATTaGCATTTTAGATTCACACTTGCAGATGTGGCAGCT | + |
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Preference number: 3 (lower is better) Translates to: IPIRGSQWLTRN*HFRFTLADVAA Trigger: AGCTGCCACATCTGCAAGTGTGAATCTAAAATGCCAATTTCTAGTGAGCCACTGAGATCCTCTGATTGGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR-3UTR CAA 90 bp | GCTTGCTTTGTCCAATGTCCTTGTCTTCAAGGCAAGACGTCCACATACTCCTCATTCTCATTATTGGGTTaGAAAGATGAACCACCATTC | + |
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Preference number: 3 (lower is better) Translates to: ACFVQCPCLQGKTSTYSSFSLLG*KDEPPF Trigger: GAATGGTGGTTCATCTTTCAAACCCAATAATGAGAA...TGAGGAGTATGTGGACGTCTTGCCTTGAAGACAAGGACATTGGACAAAGCAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097470.4 |
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| 3UTR TCA 72 bp | TTTAGTCACATTTACCAGAAGGCAGAGCTAGCAAAGTaGTGGCTGCATATGTGGAATTGGGATCAGGAAAAC | + |
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Preference number: 3 (lower is better) Translates to: FSHIYQKAELAK*WLHMWNWDQEN Trigger: GTTTTCCTGATCCCAATTCCACATATGCAGCCATCACTTTGCTAGCTCTGCCTTCTGGTAAATGTGACTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CCA 72 bp | CAAGGCAGAAAGATTGCCTTCAGTTCAAGGCTACCTTaGGCTAGACTGAGATTCTGTCTAAAGAAAAACCAA | + |
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Preference number: 3 (lower is better) Translates to: QGRKIAFSSRLP*ARLRFCLKKNQ Trigger: TTGGTTTTTCTTTAGACAGAATCTCAGTCTAGCCCAAGGTAGCCTTGAACTGAAGGCAATCTTTCTGCCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR GCA 72 bp | TCCTTAATTCCTATGTTTAGGAAGGATATATTTCGGTaGATCATCTGTTTCCATAAGCTGGGCACAGCCATG | + |
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Preference number: 3 (lower is better) Translates to: SLIPMFRKDIFR*IICFHKLGTAM Trigger: CATGGCTGTGCCCAGCTTATGGAAACAGATGATGCACCGAAATATATCCTTCCTAAACATAGGAATTAAGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR GCA 72 bp | GATGGGAACTCTGAAGTCACTATTGAGTATTCTTTCTaGTGTATGAAGTACTTTTTCCACTTCACTTCCCAT | + |
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Preference number: 3 (lower is better) Translates to: DGNSEVTIEYSF*CMKYFFHFTSH Trigger: ATGGGAAGTGAAGTGGAAAAAGTACTTCATACAGCAGAAAGAATACTCAATAGTGACTTCAGAGTTCCCATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR GCA 72 bp | GGCCCTAAAGATAACTCAGCCAGTCCTTTAGAAAAATaGTTTCAGTCCTTAATTCCTATGTTTAGGAAGGAT | + |
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Preference number: 3 (lower is better) Translates to: GPKDNSASPLEK*FQSLIPMFRKD Trigger: ATCCTTCCTAAACATAGGAATTAAGGACTGAAAGCATTTTTCTAAAGGACTGGCTGAGTTATCTTTAGGGCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR TCA 72 bp | AAAAAGATGGACAGATATGGAGATCACCCTGTTAAGTaGCATTTGTCAGATTCAAGACAAACCAGTTTTCTT | + |
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Preference number: 3 (lower is better) Translates to: KKMDRYGDHPVK*HLSDSRQTSFL Trigger: AAGAAAACTGGTTTGTCTTGAATCTGACAAATGTCACTTAACAGGGTGATCTCCATATCTGTCCATCTTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| CDS-3UTR TCA 90 bp | TCTTCAAGGCAAGACGTCCACATACTCCTCATCAGTGTTCTCGTAAACATTCGCGAGTACTGGGCTCAGTaGGACACAGAGGCACAGGGC | + |
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Preference number: 4 (lower is better) Translates to: SSRQDVHILLISVLVNIREYWAQ*DTEAQG Trigger: GCCCTGTGCCTCTGTGTCTCACTGAGCCCAGTACTC...GCGAATGTTTACGAGAACACTGATGAGGAGTATGTGGACGTCTTGCCTTGAAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097470.4 |
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| 3UTR CAA 72 bp | ATGGCTGCATATGTGGAATTGGGATCAGGAAAACTGTaGCCAGAGGAATGGATGGGTGTCTGGCAGGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: MAAYVELGSGKL*PEEWMGVWQEV Trigger: GACCTCCTGCCAGACACCCATCCATTCCTCTGGCAACAGTTTTCCTGATCCCAATTCCACATATGCAGCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CAA 72 bp | GTCTTCTCGCTCCTGGACAGAAGCCGCTTCTCATTATaGGGTTTGAAAGATGAACCACCATTCCTTGACCTG | + |
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Preference number: 4 (lower is better) Translates to: VFSLLDRSRFSL*GLKDEPPFLDL Trigger: CAGGTCAAGGAATGGTGGTTCATCTTTCAAACCCAATAATGAGAAGCGGCTTCTGTCCAGGAGCGAGAAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097470.4 |
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| 3UTR CAA 72 bp | AGCCATCTCTCCTCTAGCTTGCTTTGTCCAATGTCCTaGTCTTCAAGGCAAGACGTCCACATACTCCTCATC | + |
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Preference number: 4 (lower is better) Translates to: SHLSSSLLCPMS*SSRQDVHILLI Trigger: GATGAGGAGTATGTGGACGTCTTGCCTTGAAGACAAGGACATTGGACAAAGCAAGCTAGAGGAGAGATGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097470.4 |
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| 3UTR CAA 72 bp | GGCAGAGCTAGCAAAGTGATGGCTGCATATGTGGAATaGGGATCAGGAAAACTGTTGCCAGAGGAATGGATG | + |
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Preference number: 4 (lower is better) Translates to: GRASKVMAAYVE*GSGKLLPEEWM Trigger: CATCCATTCCTCTGGCAACAGTTTTCCTGATCCCAATTCCACATATGCAGCCATCACTTTGCTAGCTCTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| CDS-3UTR CCA 90 bp | GCTTGCTTTGTCCAATGTCCTTGTCTTCAAGGCAAGACGTCCACATACTCCTCATGGAAAGATTGTTTTTaGAGTACTGGGCTCAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: ACFVQCPCLQGKTSTYSSWKDCF*STGLSE Trigger: CTCACTGAGCCCAGTACTCCAAAAACAATCTTTCCA...TGAGGAGTATGTGGACGTCTTGCCTTGAAGACAAGGACATTGGACAAAGCAAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097470.4 |
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| CDS-3UTR CCA 90 bp | ATTGGCATTTTAGATTCACACTTGCAGATGTGGCAGCTGAGAGCAGAGCCATCTTGGAAAGATTGTTTTTaGAGTACTGGGCTCAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: IGILDSHLQMWQLRAEPSWKDCF*STGLSL Trigger: GAGACTGAGCCCAGTACTCCAAAAACAATCTTTCCA...AGATGGCTCTGCTCTCAGCTGCCACATCTGCAAGTGTGAATCTAAAATGCCAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| CDS-3UTR TCA 90 bp | ATTGGCATTTTAGATTCACACTTGCAGATGTGGCAGCTGAGAGCAGAGCCATCTTCTCATTATTGGGTTTaGAAGATGAACCACCATTCC | + |
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Preference number: 4 (lower is better) Translates to: IGILDSHLQMWQLRAEPSSHYWV*KMNHHS Trigger: GGAATGGTGGTTCATCTTTCAAACCCAATAATGAGA...AGATGGCTCTGCTCTCAGCTGCCACATCTGCAAGTGTGAATCTAAAATGCCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| CDS-3UTR TCA 90 bp | TCAAGGCTACCTTGGGCTAGACTGAGATTCTGTCTAAAGAAAAACCAAAACCACATCCATTTTTCTCTCTaGAGATTCGGTAGTTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: SRLPWARLRFCLKKNQNHIHFSL*RFGSCR Trigger: TCTACAACTACCGAATCTTCAGAGAGAAAAATGGAT...GTGGTTTTGGTTTTTCTTTAGACAGAATCTCAGTCTAGCCCAAGGTAGCCTTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CAA 72 bp | TTAATTAACCTCTGTTTATTTTACATATGCTCAGGATaGAACCCTGGGGCGTTTGCACACGCTAAGCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: LINLCLFYICSG*NPGAFAHAKQV Trigger: AACTTGCTTAGCGTGTGCAAACGCCCCAGGGTTCAATCCTGAGCATATGTAAAATAAACAGAGGTTAATTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| 3UTR CAA 72 bp | ACCACCCAAATGAGAACATCTTTAAATAGTCCCACATaGGTACAGATATGTGATGAACGTACAGCATTCACA | + |
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Preference number: 4 (lower is better) Translates to: TTQMRTSLNSPT*VQICDERTAFT Trigger: TGTGAATGCTGTACGTTCATCACATATCTGTACCAATGTGGGACTATTTAAAGATGTTCTCATTTGGGTGGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| CDS-3UTR CAA 90 bp | AGTGTGCCAGAAGGCAGGCGTCTGAGAAATGACTCCTCCAAGGCTGCAGAACAGTTGGAAAGATTGTTTTaGGAGTACTGGGCTCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: SVPEGRRLRNDSSKAAEQLERLF*EYWAQS Trigger: AGACTGAGCCCAGTACTCCAAAAACAATCTTTCCAA...CTGTTCTGCAGCCTTGGAGGAGTCATTTCTCAGACGCCTGCCTTCTGGCACACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| CDS-3UTR CAA 90 bp | CATGTTTGCTTCCTCTCAGTATCCTTAAATCCTGATCCTGCTGCTCAGACCCCTTTCTCATTATTGGGTTaGAAAGATGAACCACCATTC | + |
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Preference number: 5 (lower is better) Translates to: HVCFLSVSLNPDPAAQTPFSLLG*KDEPPF Trigger: GAATGGTGGTTCATCTTTCAAACCCAATAATGAGAA...AGGGGTCTGAGCAGCAGGATCAGGATTTAAGGATACTGAGAGGAAGCAAACATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| CDS-3UTR CAA 90 bp | ACGCTAAGCAAGTTCTCGACCATTGAGTTACATGTCCATTCAGCCTTTAGTTTAAGCCGCTTCTCATTATaGGGTTTGAAAGATGAACCA | + |
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Preference number: 5 (lower is better) Translates to: TLSKFSTIELHVHSAFSLSRFSL*GLKDEP Trigger: TGGTTCATCTTTCAAACCCAATAATGAGAAGCGGCT...TAAACTAAAGGCTGAATGGACATGTAACTCAATGGTCGAGAACTTGCTTAGCGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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| CDS CCA 72 bp | ATTCCTCTAGGTTTGGAAAGATTGTTTTTGGAGTACTaGGCTCAGTCTCTATCCTGTAATATCCATTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: IPLGLERLFLEY*AQSLSCNIHFS Trigger: AGAAAAATGGATATTACAGGATAGAGACTGAGCCCAGTACTCCAAAAACAATCTTTCCAAACCTAGAGGAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000162752.2 |
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