Pregenerated sensors for SH2D1B1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000102418Ensembl transcript IDs: ENSMUST00000179976.3
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCAGGGGATGTAGGCAGAAGAGGGCCTCTCTGGGCACAAGAGGGTaGCAGCAAGATGGGAAAGATGCAGGTCAAGGGAAGGTCAAAATG | + |
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Preference number: 1 (lower is better) Translates to: GRGCRQKRASLGTRG*QQDGKDAGQGKVKM Trigger: CATTTTGACCTTCCCTTGACCTGCATCTTTCCCATCTTGCTGGCACCCTCTTGTGCCCAGAGAGGCCCTCTTCTGCCTACATCCCCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CCA 90 bp | GTTCTGGCTGTCCAATTTCAAGATAGGGGAGTAAGAAGTAAGGAGTaGCTTTGGAGCCTCTTGAGGAATATGCCAGGAGGCAGGCGTCTG | + |
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Preference number: 1 (lower is better) Translates to: VLAVQFQDRGVRSKE*LWSLLRNMPGGRRL Trigger: CAGACGCCTGCCTCCTGGCATATTCCTCAAGAGGCTCCAAAGCCACTCCTTACTTCTTACTCCCCTATCTTGAAATTGGACAGCCAGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR TCA 90 bp | TCTTTCCACTTCACTTCCCATTGTCCTGTCGGAAGTTGTCAACCATaGAGGAATGAGGGGAGCTGCCTCTATCCAGACAGGAGATTGGGT | + |
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Preference number: 1 (lower is better) Translates to: SFHFTSHCPVGSCQP*RNEGSCLYPDRRLG Trigger: ACCCAATCTCCTGTCTGGATAGAGGCAGCTCCCCTCATTCCTTCATGGTTGACAACTTCCGACAGGACAATGGGAAGTGAAGTGGAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CCA 90 bp | GATCTTGCTATCCCAATCAGAGGATCTCAGTGGCTCACTAGAAATTaGCATTTTAGATTCACACTTGCAGATGTGGCAGCTGAGAGCAGA | + |
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Preference number: 1 (lower is better) Translates to: DLAIPIRGSQWLTRN*HFRFTLADVAAESR Trigger: TCTGCTCTCAGCTGCCACATCTGCAAGTGTGAATCTAAAATGCCAATTTCTAGTGAGCCACTGAGATCCTCTGATTGGGATAGCAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR TCA 90 bp | GTAACAAGTCAAGGAGTATTTATTATTCAGGAACTGGAGCTCAGGTaGAAAAACCTACAGTTTCAGGTTGGGTCACAGCCCCCATCAGGA | + |
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Preference number: 1 (lower is better) Translates to: VTSQGVFIIQELELR*KNLQFQVGSQPPSG Trigger: TCCTGATGGGGGCTGTGACCCAACCTGAAACTGTAGGTTTTTTCACCTGAGCTCCAGTTCCTGAATAATAAATACTCCTTGACTTGTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CCA 90 bp | CAAGGTTGCAGAACAGATCTTGCTATCCCAATCAGAGGATCTCAGTaGCTCACTAGAAATTGGCATTTTAGATTCACACTTGCAGATGTG | + |
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Preference number: 1 (lower is better) Translates to: QGCRTDLAIPIRGSQ*LTRNWHFRFTLADV Trigger: CACATCTGCAAGTGTGAATCTAAAATGCCAATTTCTAGTGAGCCACTGAGATCCTCTGATTGGGATAGCAAGATCTGTTCTGCAACCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CAA 90 bp | GGCAGGCGTCTGAGAAATGACTCCTCCAAGGTTGCAGAACAGATCTaGCTATCCCAATCAGAGGATCTCAGTGGCTCACTAGAAATTGGC | + |
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Preference number: 2 (lower is better) Translates to: GRRLRNDSSKVAEQI*LSQSEDLSGSLEIG Trigger: GCCAATTTCTAGTGAGCCACTGAGATCCTCTGATTGGGATAGCAAGATCTGTTCTGCAACCTTGGAGGAGTCATTTCTCAGACGCCTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR TCA 90 bp | CAAGGAAAGATTTGCTACGACCAAGTCTGGGAGGAAGTCAAAGGTATGACACTGGGCTTTGGAGCCTCTTaGGGAATATGCCAGGAGGCA | + |
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Preference number: 2 (lower is better) Translates to: QGKICYDQVWEEVKGMTLGFGAS*GICQEA Trigger: TGCCTCCTGGCATATTCCTCAAGAGGCTCCAAAGCC...CAGTGTCATACCTTTGACTTCCTCCCAGACTTGGTCGTAGCAAATCTTTCCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR GCA 90 bp | GCTGAGAACGAGGGGGTGATTTCTCCAAAGCCACAGAGTCACAGGATGGGAACTATCTCTCCTCTAGCTTaGTTTGTCCAATGTCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: AENEGVISPKPQSHRMGTISPLA*FVQCPC Trigger: ACAAGGACATTGGACAAAGCAAGCTAGAGGAGAGAT...AGTTCCCATCCTGTGACTCTGTGGCTTTGGAGAAATCACCCCCTCGTTCTCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR CCA 90 bp | GCTGAGAACGAGGGGGTGATTTCTCCAAAGCCACAGAGTCACAGGATGGGAACTCAGGAGATTGGGTTCTaGCTGTCCAATTTCAAGATA | + |
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Preference number: 2 (lower is better) Translates to: AENEGVISPKPQSHRMGTQEIGF*LSNFKI Trigger: TATCTTGAAATTGGACAGCCAGAACCCAATCTCCTG...AGTTCCCATCCTGTGACTCTGTGGCTTTGGAGAAATCACCCCCTCGTTCTCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR CCA 90 bp | TTCGGTGCATCATCTGTTTCCATAAGTTGGGCACAGCCATGCTCTGATGGCTCTTGCTACGACCAAGTCTaGGAGGAAGTCAAAGGTATG | + |
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Preference number: 2 (lower is better) Translates to: FGASSVSISWAQPCSDGSCYDQV*EEVKGM Trigger: CATACCTTTGACTTCCTCCCAGACTTGGTCGTAGCA...AGAGCCATCAGAGCATGGCTGTGCCCAACTTATGGAAACAGATGATGCACCGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR CCA 90 bp | GATTGGACCCTGGGGCCTTTGCACACGCTAAGCAAGTTCTCGACCATTGAGTTATCTGTTTCCATAAGTTaGGCACAGCCATGCTCTGAT | + |
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Preference number: 2 (lower is better) Translates to: DWTLGPLHTLSKFSTIELSVSIS*AQPCSD Trigger: ATCAGAGCATGGCTGTGCCCAACTTATGGAAACAGA...TAACTCAATGGTCGAGAACTTGCTTAGCGTGTGCAAAGGCCCCAGGGTCCAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR CCA 90 bp | TTCGGTGCATCATCTGTTTCCATAAGTTGGGCACAGCCATGCTCTGATGGCTCTATTAGGGGGAAAATGTaGCCAGAGGAATGTTGGACA | + |
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Preference number: 2 (lower is better) Translates to: FGASSVSISWAQPCSDGSIRGKM*PEECWT Trigger: TGTCCAACATTCCTCTGGCCACATTTTCCCCCTAAT...AGAGCCATCAGAGCATGGCTGTGCCCAACTTATGGAAACAGATGATGCACCGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR TCA 90 bp | TTCGGTGCATCATCTGTTTCCATAAGTTGGGCACAGCCATGCTCTGATGGCTCTGATCACCCTGTTAAGTaGCATTTGTCAGATTCAGGA | + |
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Preference number: 2 (lower is better) Translates to: FGASSVSISWAQPCSDGSDHPVK*HLSDSG Trigger: TCCTGAATCTGACAAATGTCACTTAACAGGGTGATC...AGAGCCATCAGAGCATGGCTGTGCCCAACTTATGGAAACAGATGATGCACCGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR CCA 90 bp | GAGGGTATATTTCGGTGCATCATCTGTTTCCATAAGTTGGGCACAGCCATGCTCAGTAAGGAGTGGCTTTaGAGCCTCTTGAGGAATATG | + |
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Preference number: 2 (lower is better) Translates to: EGIFRCIICFHKLGTAMLSKEWL*SLLRNM Trigger: CATATTCCTCAAGAGGCTCCAAAGCCACTCCTTACT...GAGCATGGCTGTGCCCAACTTATGGAAACAGATGATGCACCGAAATATACCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR CCA 90 bp | GAGGGTATATTTCGGTGCATCATCTGTTTCCATAAGTTGGGCACAGCCATGCTCAGGGTTAGGCACATATaGTCACTTGTGCCTGTAAGT | + |
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Preference number: 2 (lower is better) Translates to: EGIFRCIICFHKLGTAMLRVRHI*SLVPVS Trigger: ACTTACAGGCACAAGTGACCATATGTGCCTAACCCT...GAGCATGGCTGTGCCCAACTTATGGAAACAGATGATGCACCGAAATATACCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR CCA 90 bp | TTCGGTGCATCATCTGTTTCCATAAGTTGGGCACAGCCATGCTCTGATGGCTCTTCAGATCTTAGAAAGTaGACTATGAGTCAGGAGGAG | + |
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Preference number: 2 (lower is better) Translates to: FGASSVSISWAQPCSDGSSDLRK*TMSQEE Trigger: CTCCTCCTGACTCATAGTCCACTTTCTAAGATCTGA...AGAGCCATCAGAGCATGGCTGTGCCCAACTTATGGAAACAGATGATGCACCGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR CCA 90 bp | AGTAGTCCCACATTGGTACACATATGTGATGAACGTACAGCATTCACACAGAAAAGTTTAAGGCTAGCTTaGGCTAGACTGAGATTCTGT | + |
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Preference number: 2 (lower is better) Translates to: SSPTLVHICDERTAFTQKSLRLA*ARLRFC Trigger: ACAGAATCTCAGTCTAGCCCAAGCTAGCCTTAAACT...TTTCTGTGTGAATGCTGTACGTTCATCACATATGTGTACCAATGTGGGACTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CCA 72 bp | GAGGGCCTCTCTGGGCACAAGAGGGTGCCAGCAAGATaGGAAAGATGCAGGTCAAGGGAAGGTCAAAATGGA | + |
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Preference number: 3 (lower is better) Translates to: EGLSGHKRVPAR*ERCRSREGQNG Trigger: TCCATTTTGACCTTCCCTTGACCTGCATCTTTCCCATCTTGCTGGCACCCTCTTGTGCCCAGAGAGGCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR TCA 72 bp | GAAGGACATGTTTGCTCCTTCAGTATCCTTAGATCCTaGTCCTGCTGCTCAAACCCCTGCTCCACCTGGCTC | + |
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Preference number: 3 (lower is better) Translates to: EGHVCSFSILRS*SCCSNPCSTWL Trigger: GAGCCAGGTGGAGCAGGGGTTTGAGCAGCAGGATCAGGATCTAAGGATACTGAAGGAGCAAACATGTCCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CCA 72 bp | GGAATGAGGGGAGCTGCCTCTATCCAGACAGGAGATTaGGTTCTGGCTGTCCAATTTCAAGATAGGGGAGTA | + |
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Preference number: 3 (lower is better) Translates to: GMRGAASIQTGD*VLAVQFQDRGV Trigger: TACTCCCCTATCTTGAAATTGGACAGCCAGAACCCAATCTCCTGTCTGGATAGAGGCAGCTCCCCTCATTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR TCA 72 bp | CTTGAGGAATATGCCAGGAGGCAGGCGTCTGAGAAATaGCTCCTCCAAGGTTGCAGAACAGATCTTGCTATC | + |
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Preference number: 3 (lower is better) Translates to: LEEYARRQASEK*LLQGCRTDLAI Trigger: GATAGCAAGATCTGTTCTGCAACCTTGGAGGAGTCATTTCTCAGACGCCTGCCTCCTGGCATATTCCTCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CCA 72 bp | GGGAAGGTCAAAATGGAAGAAAGGGTTAGGCACATATaGTCACTTGTGCCTGTAAGTCCTGCACTTAGGGGG | + |
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Preference number: 3 (lower is better) Translates to: GKVKMEERVRHI*SLVPVSPALRG Trigger: CCCCCTAAGTGCAGGACTTACAGGCACAAGTGACCATATGTGCCTAACCCTTTCTTCCATTTTGACCTTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CCA 72 bp | GTCCAATTTCAAGATAGGGGAGTAAGAAGTAAGGAGTaGCTTTGGAGCCTCTTGAGGAATATGCCAGGAGGC | + |
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Preference number: 3 (lower is better) Translates to: VQFQDRGVRSKE*LWSLLRNMPGG Trigger: GCCTCCTGGCATATTCCTCAAGAGGCTCCAAAGCCACTCCTTACTTCTTACTCCCCTATCTTGAAATTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR CAA 90 bp | CAAGGAAAGATTTGCTACGACCAAGTCTGGGAGGAAGTCAAAGGTATGACACTGATGACTCCTCCAAGGTaGCAGAACAGATCTTGCTAT | + |
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Preference number: 3 (lower is better) Translates to: QGKICYDQVWEEVKGMTLMTPPR*QNRSCY Trigger: ATAGCAAGATCTGTTCTGCAACCTTGGAGGAGTCAT...CAGTGTCATACCTTTGACTTCCTCCCAGACTTGGTCGTAGCAAATCTTTCCTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CCA 72 bp | AAGATGGGAAAGATGCAGGTCAAGGGAAGGTCAAAATaGAAGAAAGGGTTAGGCACATATGGTCACTTGTGC | + |
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Preference number: 3 (lower is better) Translates to: KMGKMQVKGRSK*KKGLGTYGHLC Trigger: GCACAAGTGACCATATGTGCCTAACCCTTTCTTCCATTTTGACCTTCCCTTGACCTGCATCTTTCCCATCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR-3UTR CAA 90 bp | GAGGGTATATTTCGGTGCATCATCTGTTTCCATAAGTTGGGCACAGCCATGCTCAAGTTAAGGCAGGATTaGAAGGAAGGAAATCTGTCA | + |
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Preference number: 3 (lower is better) Translates to: EGIFRCIICFHKLGTAMLKLRQD*KEGNLS Trigger: TGACAGATTTCCTTCCTTCAAATCCTGCCTTAACTT...GAGCATGGCTGTGCCCAACTTATGGAAACAGATGATGCACCGAAATATACCCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CCA 72 bp | ATAATTAGGCAAGGAAAGATTTGCTACGACCAAGTCTaGGAGGAAGTCAAAGGTATGACACTGAGGAGAGGT | + |
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Preference number: 3 (lower is better) Translates to: IIRQGKICYDQV*EEVKGMTLRRG Trigger: ACCTCTCCTCAGTGTCATACCTTTGACTTCCTCCCAGACTTGGTCGTAGCAAATCTTTCCTTGCCTAATTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CCA 72 bp | TTAACTTTCTCTGTTTATTTTACATATGCTCATGATTaGACCCTGGGGCCTTTGCACACGCTAAGCAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: LTFSVYFTYAHD*TLGPLHTLSKF Trigger: GAACTTGCTTAGCGTGTGCAAAGGCCCCAGGGTCCAATCATGAGCATATGTAAAATAAACAGAGAAAGTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR TCA 72 bp | ACTCTGAAGTCACTATTGAGTATTCTTTCTGCTGTATaGAGTACTCTTTCCACTTCACTTCCCATTGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: TLKSLLSILSAV*STLSTSLPIVL Trigger: CAGGACAATGGGAAGTGAAGTGGAAAGAGTACTTCATACAGCAGAAAGAATACTCAATAGTGACTTCAGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR TCA 72 bp | TTTAATCACATTTACCTGAAGGCAGAGCTAGCAAAGTaGTGGCTGCGTATGTGGAATTTGGAAAAATTAGGG | + |
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Preference number: 3 (lower is better) Translates to: FNHIYLKAELAK*WLRMWNLEKLG Trigger: CCCTAATTTTTCCAAATTCCACATACGCAGCCATCACTTTGCTAGCTCTGCCTTCAGGTAAATGTGATTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR GCA 72 bp | GATGGGAACTCTGAAGTCACTATTGAGTATTCTTTCTaGTGTATGAAGTACTCTTTCCACTTCACTTCCCAT | + |
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Preference number: 3 (lower is better) Translates to: DGNSEVTIEYSF*CMKYSFHFTSH Trigger: ATGGGAAGTGAAGTGGAAAGAGTACTTCATACAGCAGAAAGAATACTCAATAGTGACTTCAGAGTTCCCATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| CDS-3UTR TCA 90 bp | GCTGAGAACGAGGGGGTGATTTCTCCAAAGCCACAGAGTCACAGGATGGGAACTCATCCACACCTCCCTTaGGGAGCAGGGCTTCACACT | + |
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Preference number: 4 (lower is better) Translates to: AENEGVISPKPQSHRMGTHPHLP*GAGLHT Trigger: AGTGTGAAGCCCTGCTCCTCAAGGGAGGTGTGGATG...AGTTCCCATCCTGTGACTCTGTGGCTTTGGAGAAATCACCCCCTCGTTCTCAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| CDS-3UTR CCA 90 bp | TTAGATCCTGATCCTGCTGCTCAAACCCCTGCTCCACCTGGCTCAATAGAGAGTCTTCACACTCTCGCTTaGTCAGGCAGCCATGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: LDPDPAAQTPAPPGSIESLHTLA*SGSHGS Trigger: ACTACCATGGCTGCCTGACCAAGCGAGAGTGTGAAG...ACTCTCTATTGAGCCAGGTGGAGCAGGGGTTTGAGCAGCAGGATCAGGATCTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CAA 72 bp | AGGGGAGTAAGAAGTAAGGAGTGGCTTTGGAGCCTCTaGAGGAATATGCCAGGAGGCAGGCGTCTGAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: RGVRSKEWLWSL*RNMPGGRRLRN Trigger: ATTTCTCAGACGCCTGCCTCCTGGCATATTCCTCAAGAGGCTCCAAAGCCACTCCTTACTTCTTACTCCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CAA 72 bp | CTGAGAAATGACTCCTCCAAGGTTGCAGAACAGATCTaGCTATCCCAATCAGAGGATCTCAGTGGCTCACTA | + |
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Preference number: 4 (lower is better) Translates to: LRNDSSKVAEQI*LSQSEDLSGSL Trigger: TAGTGAGCCACTGAGATCCTCTGATTGGGATAGCAAGATCTGTTCTGCAACCTTGGAGGAGTCATTTCTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| CDS-3UTR TCA 90 bp | ATTAGGCAAGGAAAGATTTGCTACGACCAAGTCTGGGAGGAAGTCAAAGGTATGATCGTTCTTGGAGTATaGGCATTAGTCTCTATCCTG | + |
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Preference number: 4 (lower is better) Translates to: IRQGKICYDQVWEEVKGMIVLGV*ALVSIL Trigger: CAGGATAGAGACTAATGCTCATACTCCAAGAACGAT...CATACCTTTGACTTCCTCCCAGACTTGGTCGTAGCAAATCTTTCCTTGCCTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| CDS-3UTR TCA 90 bp | AGTAGTCCCACATTGGTACACATATGTGATGAACGTACAGCATTCACACAGAAAATCCATGTTTCTCTCTaGAGATTCGGTAGCTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: SSPTLVHICDERTAFTQKIHVSL*RFGSCR Trigger: TCTACAGCTACCGAATCTTCAGAGAGAAACATGGAT...TTTCTGTGTGAATGCTGTACGTTCATCACATATGTGTACCAATGTGGGACTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| CDS-3UTR CCA 90 bp | AGTAGTCCCACATTGGTACACATATGTGATGAACGTACAGCATTCACACAGAAAATTCTTCTCCCTCTTTaGCATAGGTTGTTTCTCATT | + |
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Preference number: 4 (lower is better) Translates to: SSPTLVHICDERTAFTQKILLPL*HRLFLI Trigger: AATGAGAAACAACCTATGCCAAAGAGGGAGAAGAAT...TTTCTGTGTGAATGCTGTACGTTCATCACATATGTGTACCAATGTGGGACTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| 3UTR CAA 72 bp | ACCAACCATATGAGAACATCTTTAAGTAGTCCCACATaGGTACACATATGTGATGAACGTACAGCATTCACA | + |
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Preference number: 4 (lower is better) Translates to: TNHMRTSLSSPT*VHICDERTAFT Trigger: TGTGAATGCTGTACGTTCATCACATATGTGTACCAATGTGGGACTACTTAAAGATGTTCTCATATGGTTGGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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| CDS-3UTR CAA 90 bp | CATGAAGGAATGAGGGGAGCTGCCTCTATCCAGACAGGAGATTGGGTTCTGGCTCCAATTCCTGTAGGTTaGGAAAGATCGTTCTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: HEGMRGAASIQTGDWVLAPIPVG*ERSFLE Trigger: CTCCAAGAACGATCTTTCCAAACCTACAGGAATTGG...AGCCAGAACCCAATCTCCTGTCTGGATAGAGGCAGCTCCCCTCATTCCTTCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179976.3 |
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