Pregenerated sensors for SH2D1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005696Ensembl transcript IDs: ENSMUST00000005839.11, ENSMUST00000115070.8, ENSMUST00000153948.2, ENSMUST00000189753.7
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TACCATTCTTGTTTTCTTGGAGGAACACACGTATACATAGCGACCTaGCTGATACTTCAGATCTCAGACTGCTCTTCCACAGCCTTCTGT | + |
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Preference number: 1 (lower is better) Translates to: YHSCFLGGTHVYIAT*LILQISDCSSTAFC Trigger: ACAGAAGGCTGTGGAAGAGCAGTCTGAGATCTGAAGTATCAGGCAGGTCGCTATGTATACGTGTGTTCCTCCAAGAAAACAAGAATGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| 3UTR GCA 90 bp | TGCAGCTTTGACATCAGGCGAGATGCTATTACAGGACTAGAGTCGTaGTTAAAAGGCATTTGCAGCTCGCTGAACTGTACTATCTACAAT | + |
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Preference number: 1 (lower is better) Translates to: CSFDIRRDAITGLES*LKGICSSLNCTIYN Trigger: ATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCCTTTTAAGCACGACTCTAGTCCTGTAATAGCATCTCGCCTGATGTCAAAGCTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 |
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| 3UTR GCA 90 bp | AGGCGAGATGCTATTACAGGACTAGAGTCGTGCTTAAAAGGCATTTaGAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCA | + |
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Preference number: 1 (lower is better) Translates to: RRDAITGLESCLKGI*SSLNCTIYNIQDLA Trigger: TGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCCTTTTAAGCACGACTCTAGTCCTGTAATAGCATCTCGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 |
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| 3UTR CAA 90 bp | GGAATGGAGTGTATTATAGCTTGTAGGGAAACATGTGGCTATAGATaGGGTGTACCATTCTTGTTTTCTTGGAGGAACACACGTATACAT | + |
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Preference number: 2 (lower is better) Translates to: GMECIIACRETCGYR*GVPFLFSWRNTRIH Trigger: ATGTATACGTGTGTTCCTCCAAGAAAACAAGAATGGTACACCCAATCTATAGCCACATGTTTCCCTACAAGCTATAATACACTCCATTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| 3UTR GCA 72 bp | GACATCAGGCGAGATGCTATTACAGGACTAGAGTCGTaGTTAAAAGGCATTTGCAGCTCGCTGAACTGTACT | + |
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Preference number: 3 (lower is better) Translates to: DIRRDAITGLES*LKGICSSLNCT Trigger: AGTACAGTTCAGCGAGCTGCAAATGCCTTTTAAGCACGACTCTAGTCCTGTAATAGCATCTCGCCTGATGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 |
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| 3UTR GCA 72 bp | TGTTTTCTTGGAGGAACACACGTATACATAGCGACCTaGCTGATACTTCAGATCTCAGACTGCTCTTCCACA | + |
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Preference number: 3 (lower is better) Translates to: CFLGGTHVYIAT*LILQISDCSST Trigger: TGTGGAAGAGCAGTCTGAGATCTGAAGTATCAGGCAGGTCGCTATGTATACGTGTGTTCCTCCAAGAAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| 3UTR CCA 72 bp | TGTGGCTATAGATTGGGTGTACCATTCTTGTTTTCTTaGAGGAACACACGTATACATAGCGACCTGCCTGAT | + |
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Preference number: 3 (lower is better) Translates to: CGYRLGVPFLFS*RNTRIHSDLPD Trigger: ATCAGGCAGGTCGCTATGTATACGTGTGTTCCTCCAAGAAAACAAGAATGGTACACCCAATCTATAGCCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| 3UTR GCA 72 bp | TACATAGCGACCTGCCTGATACTTCAGATCTCAGACTaGTCTTCCACAGCCTTCTGTAAGGTTCTTTATTTT | + |
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Preference number: 3 (lower is better) Translates to: YIATCLILQISD*SSTAFCKVLYF Trigger: AAAATAAAGAACCTTACAGAAGGCTGTGGAAGAGCAGTCTGAGATCTGAAGTATCAGGCAGGTCGCTATGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| 3UTR GCA 72 bp | GCTATTACAGGACTAGAGTCGTGCTTAAAAGGCATTTaGAGCTCGCTGAACTGTACTATCTACAATATACAA | + |
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Preference number: 3 (lower is better) Translates to: AITGLESCLKGI*SSLNCTIYNIQ Trigger: TTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCCTTTTAAGCACGACTCTAGTCCTGTAATAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 |
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| 3UTR-3UTR CAA 90 bp | GTTCAGGCAAAGTTTTTGTGTTTCGGCAGATTTGTTTGTGTTAAGGTCAATTTATTGGGTGTACCATTCTaGTTTTCTTGGAGGAACACA | + |
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Preference number: 3 (lower is better) Translates to: VQAKFLCFGRFVCVKVNLLGVPF*FSWRNT Trigger: TGTGTTCCTCCAAGAAAACAAGAATGGTACACCCAA...TAAATTGACCTTAACACAAACAAATCTGCCGAAACACAAAAACTTTGCCTGAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| 3UTR-3UTR CAA 90 bp | GTTCAGGCAAAGTTTTTGTGTTTCGGCAGATTTGTTTGTGTTAAGGTCAATTTAACCATTCTTGTTTTCTaGGAGGAACACACGTATACA | + |
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Preference number: 3 (lower is better) Translates to: VQAKFLCFGRFVCVKVNLTILVF*EEHTYT Trigger: TGTATACGTGTGTTCCTCCAAGAAAACAAGAATGGT...TAAATTGACCTTAACACAAACAAATCTGCCGAAACACAAAAACTTTGCCTGAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| CDS-3UTR CCA 90 bp | GGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCACATAATCTCTTCTCCCTGTaGGAGCTTGTGGGCCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: GICSSLNCTIYNIQDLAHNLFSL*ELVGPC Trigger: GCAGGGGCCCACAAGCTCCCACAGGGAGAAGAGATT...ATGTGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| CDS-3UTR CCA 90 bp | CATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCACATACAATCTCTTCTCCCTGTaGGAGCTTGTGGGCCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: HLQLAELYYLQYTRLGTYNLFSL*ELVGPC Trigger: GCAGGGGCCCACAAGCTCCCACAGGGAGAAGAGATT...GTATGTGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| CDS-3UTR CCA 90 bp | AAAGGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCAAATCTCTTCTCCCTGTaGGAGCTTGTGGGCCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: KGICSSLNCTIYNIQDLANLFSL*ELVGPC Trigger: GCAGGGGCCCACAAGCTCCCACAGGGAGAAGAGATT...TGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| CDS-3UTR CCA 90 bp | GGCTATAGATTGGGTGTACCATTCTTGTTTTCTTGGAGGAACACACGTATACATAATCTCTTCTCCCTGTaGGAGCTTGTGGGCCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: GYRLGVPFLFSWRNTRIHNLFSL*ELVGPC Trigger: GCAGGGGCCCACAAGCTCCCACAGGGAGAAGAGATT...ATGTATACGTGTGTTCCTCCAAGAAAACAAGAATGGTACACCCAATCTATAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| CDS-3UTR GCA 90 bp | GAGTCGTGCTTAAAAGGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATAGAGCTTGTGGGCCCCTaGCAGAGGACTTTTCAACTG | + |
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Preference number: 4 (lower is better) Translates to: ESCLKGICSSLNCTIYNIELVGP*QRTFQL Trigger: CAGTTGAAAAGTCCTCTGGCAGGGGCCCACAAGCTC...TATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCCTTTTAAGCACGACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| CDS-3UTR CCA 90 bp | GATTGGGTGTACCATTCTTGTTTTCTTGGAGGAACACACGTATACATAGCGACCCTGCTGATTTTGCCGTaGTACACAGTCACTGCATCC | + |
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Preference number: 4 (lower is better) Translates to: DWVYHSCFLGGTHVYIATLLILP*YTVTAS Trigger: GGATGCAGTGACTGTGTACCACGGCAAAATCAGCAG...GGTCGCTATGTATACGTGTGTTCCTCCAAGAAAACAAGAATGGTACACCCAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| CDS-3UTR CCA 90 bp | GGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCACATCTGCTGATTTTGCCGTaGTACACAGTCACTGCATCC | + |
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Preference number: 4 (lower is better) Translates to: GICSSLNCTIYNIQDLAHLLILP*YTVTAS Trigger: GGATGCAGTGACTGTGTACCACGGCAAAATCAGCAG...ATGTGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 |
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| CDS-3UTR GCA 90 bp | CATTCTTGTTTTCTTGGAGGAACACACGTATACATAGCGACCTGCCTGATACTTTTTATGTACTCCAGGTaGTGTCTCGGCACTCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: HSCFLGGTHVYIATCLILFMYSR*CLGTPR Trigger: TCTTGGAGTGCCGAGACAGCACCTGGAGTACATAAA...AAGTATCAGGCAGGTCGCTATGTATACGTGTGTTCCTCCAAGAAAACAAGAATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| CDS-3UTR GCA 90 bp | CTTAAAAGGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGAGCTTGTGGGCCCCTaGCAGAGGACTTTTCAACTG | + |
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Preference number: 4 (lower is better) Translates to: LKRHLQLAELYYLQYTRLELVGP*QRTFQL Trigger: CAGTTGAAAAGTCCTCTGGCAGGGGCCCACAAGCTC...AAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCCTTTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| CDS-3UTR GCA 90 bp | CATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCACATACTTTATGTACTCCAGGTaGTGTCTCGGCACTCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: HLQLAELYYLQYTRLGTYFMYSR*CLGTPR Trigger: TCTTGGAGTGCCGAGACAGCACCTGGAGTACATAAA...GTATGTGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 |
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| CDS-3UTR GCA 90 bp | AGAGTCGTGCTTAAAAGGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATTTTATGTACTCCAGGTaGTGTCTCGGCACTCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: RVVLKRHLQLAELYYLQYFMYSR*CLGTPR Trigger: TCTTGGAGTGCCGAGACAGCACCTGGAGTACATAAA...ATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCCTTTTAAGCACGACTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 |
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| CDS-3UTR CCA 90 bp | GAGTCGTGCTTAAAAGGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATAAGAGGACTTTTCAACTaGATACTGCAGAGGCGTCAC | + |
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Preference number: 4 (lower is better) Translates to: ESCLKGICSSLNCTIYNIRGLFN*ILQRRH Trigger: GTGACGCCTCTGCAGTATCCAGTTGAAAAGTCCTCT...TATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCCTTTTAAGCACGACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| CDS-3UTR CCA 90 bp | CATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCACATACAGAGGACTTTTCAACTaGATACTGCAGAGGCGTCAC | + |
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Preference number: 4 (lower is better) Translates to: HLQLAELYYLQYTRLGTYRGLFN*ILQRRH Trigger: GTGACGCCTCTGCAGTATCCAGTTGAAAAGTCCTCT...GTATGTGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| 3UTR CAA 72 bp | AGGGAAACATGTGGCTATAGATTGGGTGTACCATTCTaGTTTTCTTGGAGGAACACACGTATACATAGCGAC | + |
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Preference number: 4 (lower is better) Translates to: RETCGYRLGVPF*FSWRNTRIHSD Trigger: GTCGCTATGTATACGTGTGTTCCTCCAAGAAAACAAGAATGGTACACCCAATCTATAGCCACATGTTTCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| CDS-3UTR CCA 90 bp | CTTAAAAGGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTAGAGGACTTTTCAACTaGATACTGCAGAGGCGTCAC | + |
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Preference number: 4 (lower is better) Translates to: LKRHLQLAELYYLQYTRLRGLFN*ILQRRH Trigger: GTGACGCCTCTGCAGTATCCAGTTGAAAAGTCCTCT...AAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCCTTTTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| CDS-3UTR GCA 90 bp | TTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCACATACTTATTTATGTACTCCAGGTaGTGTAAAACACACAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LQLAELYYLQYTRLGTYLFMYSR*CKTHRQ Trigger: CTGCCTGTGTGTTTTACAGCACCTGGAGTACATAAA...TAAGTATGTGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153948.2 |
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| 3UTR CAA 72 bp | TGTATTATAGCTTGTAGGGAAACATGTGGCTATAGATaGGGTGTACCATTCTTGTTTTCTTGGAGGAACACA | + |
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Preference number: 4 (lower is better) Translates to: CIIACRETCGYR*GVPFLFSWRNT Trigger: TGTGTTCCTCCAAGAAAACAAGAATGGTACACCCAATCTATAGCCACATGTTTCCCTACAAGCTATAATACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| CDS GCA 90 bp | GGCAGATATCAGAATCTCTTCTCCCTGTGGGAGCTTGTGGGCCCCTaGCAGAGGACTTTTCAACTGGATACTGCAGAGGCGTCACGATGC | + |
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Preference number: 5 (lower is better) Translates to: GRYQNLFSLWELVGP*QRTFQLDTAEASRC Trigger: GCATCGTGACGCCTCTGCAGTATCCAGTTGAAAAGTCCTCTGGCAGGGGCCCACAAGCTCCCACAGGGAGAAGAGATTCTGATATCTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 ENSMUST00000189753.7 |
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| CDS CCA 90 bp | TGCATTCAGGCAGATATCAGAATCTCTTCTCCCTGTGGGAGCTTGTaGGCCCCTGCCAGAGGACTTTTCAACTGGATACTGCAGAGGCGT | + |
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Preference number: 5 (lower is better) Translates to: CIQADIRISSPCGSL*APARGLFNWILQRR Trigger: ACGCCTCTGCAGTATCCAGTTGAAAAGTCCTCTGGCAGGGGCCCACAAGCTCCCACAGGGAGAAGAGATTCTGATATCTGCCTGAATGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 ENSMUST00000189753.7 |
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| CDS-3UTR CAA 90 bp | GGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCACATAGGCGTCACGATGCCTaGATCCGGCTTCTGAAACGC | + |
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Preference number: 5 (lower is better) Translates to: GICSSLNCTIYNIQDLAHRRHDA*IRLLKR Trigger: GCGTTTCAGAAGCCGGATCAAGGCATCGTGACGCCT...ATGTGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| CDS-3UTR CAA 90 bp | TATTACAGGACTAGAGTCGTGCTTAAAAGGCATTTGCAGCTCGCTGAACTGTACGTCTCCCTGCTGATTTaGCCGTGGTACACAGTCACT | + |
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Preference number: 5 (lower is better) Translates to: YYRTRVVLKRHLQLAELYVSLLI*PWYTVT Trigger: AGTGACTGTGTACCACGGCAAAATCAGCAGGGAGAC...GTACAGTTCAGCGAGCTGCAAATGCCTTTTAAGCACGACTCTAGTCCTGTAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 |
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| CDS-3UTR CAA 90 bp | CATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCACATACAGGCGTCACGATGCCTaGATCCGGCTTCTGAAACGC | + |
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Preference number: 5 (lower is better) Translates to: HLQLAELYYLQYTRLGTYRRHDA*IRLLKR Trigger: GCGTTTCAGAAGCCGGATCAAGGCATCGTGACGCCT...GTATGTGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| CDS-3UTR CAA 90 bp | GGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGGCACATGTCTCCCTGCTGATTTaGCCGTGGTACACAGTCACT | + |
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Preference number: 5 (lower is better) Translates to: GICSSLNCTIYNIQDLAHVSLLI*PWYTVT Trigger: AGTGACTGTGTACCACGGCAAAATCAGCAGGGAGAC...ATGTGCCAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 |
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| CDS-3UTR CAA 90 bp | TGTAGGGAAACATGTGGCTATAGATTGGGTGTACCATTCTTGTTTTCTTGGAGGGTCTCCCTGCTGATTTaGCCGTGGTACACAGTCACT | + |
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Preference number: 5 (lower is better) Translates to: CRETCGYRLGVPFLFSWRVSLLI*PWYTVT Trigger: AGTGACTGTGTACCACGGCAAAATCAGCAGGGAGAC...CCTCCAAGAAAACAAGAATGGTACACCCAATCTATAGCCACATGTTTCCCTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| CDS-3UTR CAA 90 bp | TTAAAAGGCATTTGCAGCTCGCTGAACTGTACTATCTACAATATACAAGACTTGAGGCGTCACGATGCCTaGATCCGGCTTCTGAAACGC | + |
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Preference number: 5 (lower is better) Translates to: LKGICSSLNCTIYNIQDLRRHDA*IRLLKR Trigger: GCGTTTCAGAAGCCGGATCAAGGCATCGTGACGCCT...CAAGTCTTGTATATTGTAGATAGTACAGTTCAGCGAGCTGCAAATGCCTTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 |
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| CDS-3UTR CAA 90 bp | GTTCAGGCAAAGTTTTTGTGTTTCGGCAGATTTGTTTGTGTTAAGGTCAATTTAAGGCGTCACGATGCCTaGATCCGGCTTCTGAAACGC | + |
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Preference number: 5 (lower is better) Translates to: VQAKFLCFGRFVCVKVNLRRHDA*IRLLKR Trigger: GCGTTTCAGAAGCCGGATCAAGGCATCGTGACGCCT...TAAATTGACCTTAACACAAACAAATCTGCCGAAACACAAAAACTTTGCCTGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| CDS-3UTR CAA 90 bp | TATTACAGGACTAGAGTCGTGCTTAAAAGGCATTTGCAGCTCGCTGAACTGTACTGTGTAGATGTAACCTaGATACAAAACACACAGGCA | + |
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Preference number: 5 (lower is better) Translates to: YYRTRVVLKRHLQLAELYCVDVT*IQNTQA Trigger: TGCCTGTGTGTTTTGTATCAAGGTTACATCTACACA...GTACAGTTCAGCGAGCTGCAAATGCCTTTTAAGCACGACTCTAGTCCTGTAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005839.11 |
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| CDS-3UTR CAA 90 bp | TATCAAGAAAAATTGGAGGGAATGGAGTGTATTATAGCTTGTAGGGAAACATGTTGTGTAGATGTAACCTaGATACAAAACACACAGGCA | + |
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Preference number: 5 (lower is better) Translates to: YQEKLEGMECIIACRETCCVDVT*IQNTQA Trigger: TGCCTGTGTGTTTTGTATCAAGGTTACATCTACACA...ACATGTTTCCCTACAAGCTATAATACACTCCATTCCCTCCAATTTTTCTTGATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000189753.7 |
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| CDS GCA 72 bp | CAGAATCTCTTCTCCCTGTGGGAGCTTGTGGGCCCCTaGCAGAGGACTTTTCAACTGGATACTGCAGAGGCG | + |
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Preference number: 6 (lower is better) Translates to: QNLFSLWELVGP*QRTFQLDTAEA Trigger: CGCCTCTGCAGTATCCAGTTGAAAAGTCCTCTGGCAGGGGCCCACAAGCTCCCACAGGGAGAAGAGATTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 ENSMUST00000189753.7 |
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| CDS CAA 90 bp | TGGTGCATTCAGGCAGATATCAGAATCTCTTCTCCCTGTGGGAGCTaGTGGGCCCCTGCCAGAGGACTTTTCAACTGGATACTGCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: WCIQADIRISSPCGS*WAPARGLFNWILQR Trigger: CCTCTGCAGTATCCAGTTGAAAAGTCCTCTGGCAGGGGCCCACAAGCTCCCACAGGGAGAAGAGATTCTGATATCTGCCTGAATGCACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 ENSMUST00000189753.7 |
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| CDS CCA 72 bp | GTGCATTCAGGCAGATATCAGAATCTCTTCTCCCTGTaGGAGCTTGTGGGCCCCTGCCAGAGGACTTTTCAA | + |
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Preference number: 6 (lower is better) Translates to: VHSGRYQNLFSL*ELVGPCQRTFQ Trigger: TTGAAAAGTCCTCTGGCAGGGGCCCACAAGCTCCCACAGGGAGAAGAGATTCTGATATCTGCCTGAATGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000005839.11 ENSMUST00000115070.8 ENSMUST00000153948.2 ENSMUST00000189753.7 |
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