RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SGSM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038351

Ensembl transcript IDs: ENSMUST00000057631.12, ENSMUST00000081799.6

Found 386 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CATGGGGTTAATCTCTGGCCAGAGGCTGTGGCAGTGCTGCTGAGGTaGGCCACTCTCACCCAGGGCCCACATCTGACTGCCCCAGAGTCT +
Preference number: 1 (lower is better)
Translates to: HGVNLWPEAVAVLLR*ATLTQGPHLTAPES
Trigger: AGACTCTGGGGCAGTCAGATGTGGGCCCTGGGTGAGAGTGGCCCACCTCAGCAGCACTGCCACAGCCTCTGGCCAGAGATTAACCCCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 90 bp GCCTATGGAAAGTGGAGCTGGCCTTGCCTCTCCCTGGGGATGAACTaGGACTATCCAGGCACTCCCACCTCCCTCAGCCCCAGGTACTCA +
Preference number: 1 (lower is better)
Translates to: AYGKWSWPCLSLGMN*DYPGTPTSLSPRYS
Trigger: TGAGTACCTGGGGCTGAGGGAGGTGGGAGTGCCTGGATAGTCCCAGTTCATCCCCAGGGAGAGGCAAGGCCAGCTCCACTTTCCATAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR GCA 90 bp CTTCCTACACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTaGCCTCCACACCACACAGCGGGCGGCGAGTGTGTTGCTTATGTG +
Preference number: 1 (lower is better)
Translates to: LPTLSGVVLEGKRSH*PPHHTAGGECVAYV
Trigger: CACATAAGCAACACACTCGCCGCCCGCTGTGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTGTAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 90 bp AGTCTGTGGACCTTGGTGACTTCTAGGCAGGAGCCAGGCCAGGTGTaGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGG +
Preference number: 1 (lower is better)
Translates to: SLWTLVTSRQEPGQV*ASGPRLGLHVLRWW
Trigger: CCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACACCTGGCCTGGCTCCTGCCTAGAAGTCACCAAGGTCCACAGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR TCA 90 bp GTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGGACCTTGGTaGCTTCTAGGCAGGAGCCAGGCCAGGTGTGGGCTTCAGGGCCCA +
Preference number: 1 (lower is better)
Translates to: VLSRVFQLQQVCGPW*LLGRSQARCGLQGP
Trigger: TGGGCCCTGAAGCCCACACCTGGCCTGGCTCCTGCCTAGAAGTCACCAAGGTCCACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR GCA 90 bp CTCACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTaGTTGGTGGAGACTGAGGAGTCAGGAACAAGGGTGGGCAATGGG +
Preference number: 1 (lower is better)
Translates to: LTKPESLRQAHIGHP*LVETEESGTRVGNG
Trigger: CCCATTGCCCACCCTTGTTCCTGACTCCTCAGTCTCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 90 bp AATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTaGACCTTGGTGACTTCTAGGCAGGAGCCAGGCCAGGTGTGGGCT +
Preference number: 1 (lower is better)
Translates to: NAAGPFSCFSAAASL*TLVTSRQEPGQVWA
Trigger: AGCCCACACCTGGCCTGGCTCCTGCCTAGAAGTCACCAAGGTCCACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR TCA 90 bp AACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTCTCAGAACCCTaGAAAGCCTATGGAAAGTGGAGCTGGCCTTGCCTCTCCCTGGGG +
Preference number: 1 (lower is better)
Translates to: NSSRDPSGSSGFSEP*KAYGKWSWPCLSLG
Trigger: CCCCAGGGAGAGGCAAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 90 bp GTGACAGAACAAAGAAACAGCATGCCTAGACCTCAGGTCAAGGGTTaGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCT +
Preference number: 1 (lower is better)
Translates to: VTEQRNSMPRPQVKG*TFIDNPVNSSRDPS
Trigger: AGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCCTTGACCTGAGGTCTAGGCATGCTGTTTCTTTGTTCTGTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR GCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGCTGGGCTCTGCACTTTaGCACCCCCAGCTGCAGCCG +
Preference number: 2 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGLGSAL*HPQLQP
Trigger: CGGCTGCAGCTGGGGGTGGCAAAGTGCAGAGCCCAG...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGTGGAGCTCAGGGGCCTaGTACCTGGGCTCTGCACTT +
Preference number: 2 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGWSSGA*YLGSAL
Trigger: AAGTGCAGAGCCCAGGTACCAGGCCCCTGAGCTCCA...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGGTTAGGTTACACAGCTaGGTGGGTGGGGTTGGCAGG +
Preference number: 2 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGVRLHS*VGGVGR
Trigger: CCTGCCAACCCCACCCACTCAGCTGTGTAACCTAAC...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGTCGGGAGAGGCAGTTTaGGCTATGATGGCCTCTGCC +
Preference number: 2 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGSGEAV*AMMASA
Trigger: GGCAGAGGCCATCATAGCCCAAACTGCCTCTCCCGA...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTCCTCCTACCCAGCTGTaGTCTGCAGGCATCCTGACC +
Preference number: 2 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVPPTQL*SAGILT
Trigger: GGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGG...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGCCTCTCCCTGGGGATaGACTGGGACTATCCAGGCA +
Preference number: 2 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVASPWG*TGTIQA
Trigger: TGCCTGGATAGTCCCAGTTCATCCCCAGGGAGAGGC...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGTTAGGTTACACAGCTaGGTGGGTGGGGTTGGCAGG +
Preference number: 2 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVVRLHS*VGGVGR
Trigger: CCTGCCAACCCCACCCACTCAGCTGTGTAACCTAAC...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACATCGGGAGAGGCAGTTTaGGCTATGATGGCCTCTGCC +
Preference number: 2 (lower is better)
Translates to: HFLGWFWRASAVTALHTTSGEAV*AMMASA
Trigger: GGCAGAGGCCATCATAGCCCAAACTGCCTCTCCCGA...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGGCAGTGCTGCTGAGGTaGGCCACTCTCACCCAGGGC +
Preference number: 2 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWAVLLR*ATLTQG
Trigger: GCCCTGGGTGAGAGTGGCCCACCTCAGCAGCACTGC...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGACCCTGAAAAGCCTATaGAAAGTGGAGCTGGCCTTG +
Preference number: 2 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGTLKSL*KVELAL
Trigger: CAAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGT...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGACAGGGGCCTGGTACCTaGGCTCTGCACTTTGCCACC +
Preference number: 2 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGQGPGT*ALHFAT
Trigger: GGTGGCAAAGTGCAGAGCCCAGGTACCAGGCCCCTG...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CAA 90 bp GCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGGACCTaGGTGACTTCTAGGCAGGAGCCAGGCCAGGTGTGGGCTTCAGGG +
Preference number: 2 (lower is better)
Translates to: AGPFSCFSAAASLWT*VTSRQEPGQVWASG
Trigger: CCCTGAAGCCCACACCTGGCCTGGCTCCTGCCTAGAAGTCACCAAGGTCCACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGCTGTGGCAGTGCTGCTaGGGTGGGCCACTCTCACCC +
Preference number: 2 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVLWQCC*GGPLSP
Trigger: GGGTGAGAGTGGCCCACCTCAGCAGCACTGCCACAG...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR GCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCCTGGGCTCTGCACTTTaGCACCCCCAGCTGCAGCCG +
Preference number: 2 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVLGSAL*HPQLQP
Trigger: CGGCTGCAGCTGGGGGTGGCAAAGTGCAGAGCCCAG...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR GCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGGGCTATGATGGCCTCTaGCTCTCCCTGCTGGAGCTC +
Preference number: 2 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWGYDGL*LSLLEL
Trigger: GAGCTCCAGCAGGGAGAGGCAGAGGCCATCATAGCC...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGATGGAGCTCAGGGGCCTaGTACCTGGGCTCTGCACTT +
Preference number: 2 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGWSSGA*YLGSAL
Trigger: AAGTGCAGAGCCCAGGTACCAGGCCCCTGAGCTCCA...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGGGTTACACAGCTGAGTaGGTGGGGTTGGCAGGGGTG +
Preference number: 2 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWGYTAE*VGLAGV
Trigger: CACCCCTGCCAACCCCACCCACTCAGCTGTGTAACC...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTTTCCAGAGACCCTTCTaGGTCTTCAGGCTTCTCAGA +
Preference number: 2 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVFQRPF*VFRLLR
Trigger: TCTGAGAAGCCTGAAGACCCAGAAGGGTCTCTGGAA...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGGGCTTCTCAGAACCCTaGAAAGCCTATGGAAAGTGG +
Preference number: 2 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGGFSEP*KAYGKW
Trigger: CCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCC...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR GCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAGGGCCCACATCTGACTaGCCCAGAGTCTTAGGAGAG +
Preference number: 2 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGGPTSD*PRVLGE
Trigger: CTCTCCTAAGACTCTGGGGCAGTCAGATGTGGGCCC...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR GCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGGGCAAGCGCAGTCACTaGCCTCCACACCACACAGCG +
Preference number: 2 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWGKRSH*PPHHTA
Trigger: CGCTGTGTGGTGTGGAGGGCAGTGACTGCGCTTGCC...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCCAGGGGCCTGGTACCTaGGCTCTGCACTTTGCCACC +
Preference number: 2 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVQGPGT*ALHFAT
Trigger: GGTGGCAAAGTGCAGAGCCCAGGTACCAGGCCCCTG...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTCTGCCTCTCCCTGCTaGAGCTCAGGGGCCTGGTAC +
Preference number: 2 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVSASPC*SSGAWY
Trigger: GTACCAGGCCCCTGAGCTCCAGCAGGGAGAGGCAGA...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGAGTCTTAGGAGAGCCTaGGAGGTAGCCAAGGTCTCC +
Preference number: 2 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMSLRRA*EVAKVS
Trigger: GGAGACCTTGGCTACCTCCCAGGCTCTCCTAAGACT...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CAA 90 bp ACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTaGGTGGAGACTGAGGAGTCAGGAACAAGGGTGGGCAATGGGGTA +
Preference number: 2 (lower is better)
Translates to: TKPESLRQAHIGHPC*VETEESGTRVGNGV
Trigger: TACCCCATTGCCCACCCTTGTTCCTGACTCCTCAGTCTCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGCCTCCTACCCAGCTGTaGTCTGCAGGCATCCTGACC +
Preference number: 2 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVPPTQL*SAGILT
Trigger: GGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGG...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGAACAGGCAGCTAGTTaGGACCATAGAAGGCCTCAG +
Preference number: 2 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMEQAAS*DHRRPQ
Trigger: CTGAGGCCTTCTATGGTCTCAACTAGCTGCCTGTTC...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR GCA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGCTGGTACCTGGGCTCTaGACTTTGCCACCCCCAGCT +
Preference number: 2 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVLVPGL*TLPPPA
Trigger: AGCTGGGGGTGGCAAAGTGCAGAGCCCAGGTACCAG...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR GCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTCTGGTACCTGGGCTCTaGACTTTGCCACCCCCAGCT +
Preference number: 2 (lower is better)
Translates to: GLQASQNPEKPMESGAGLLVPGL*TLPPPA
Trigger: AGCTGGGGGTGGCAAAGTGCAGAGCCCAGGTACCAG...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR GCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTAACAAAGAAACAGCATaGCTAGACCTCAGGTCAAGG +
Preference number: 2 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVNKETA*LDLRSR
Trigger: CCTTGACCTGAGGTCTAGGCATGCTGTTTCTTTGTT...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGGGTTACACAGCTGAGTaGGTGGGGTTGGCAGGGGTG +
Preference number: 2 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVGYTAE*VGLAGV
Trigger: CACCCCTGCCAACCCCACCCACTCAGCTGTGTAACC...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTGCAGTGCTGCTGAGGTaGGCCACTCTCACCCAGGGC +
Preference number: 2 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLAVLLR*ATLTQG
Trigger: GCCCTGGGTGAGAGTGGCCCACCTCAGCAGCACTGC...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAGTACACACGAGTGGGTaGGTCACTGTGTACTGTGGG +
Preference number: 2 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGVHTSG*VTVYCG
Trigger: CCCACAGTACACAGTGACCCACCCACTCGTGTGTAC...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGAGGCAGTTTGGGCTATaGTGGCCTCTGCCTCTCCCT +
Preference number: 2 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWRQFGL*WPLPLP
Trigger: AGGGAGAGGCAGAGGCCATCATAGCCCAAACTGCCT...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR GCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGGGGCCCACATCTGACTaGCCCAGAGTCTTAGGAGAG +
Preference number: 2 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGGPTSD*PRVLGE
Trigger: CTCTCCTAAGACTCTGGGGCAGTCAGATGTGGGCCC...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTGCCTCAGGAGAGATATaGCACAGAGCCCCTGGTCCT +
Preference number: 2 (lower is better)
Translates to: GLQASQNPEKPMESGAGLASGEI*HRAPGP
Trigger: AGGACCAGGGGCTCTGTGCCATATCTCTCCTGAGGC...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGGCCTCAGGAGAGATATaGCACAGAGCCCCTGGTCCT +
Preference number: 2 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWASGEI*HRAPGP
Trigger: AGGACCAGGGGCTCTGTGCCATATCTCTCCTGAGGC...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGATCTGCAGGCATCCTaGCCCCAACTTGCCCTGCAG +
Preference number: 2 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSDLQAS*PQLALQ
Trigger: CTGCAGGGCAAGTTGGGGTCAGGATGCCTGCAGATC...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTGCCTCTCCCTGGGGATaGACTGGGACTATCCAGGCA +
Preference number: 2 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLASPWG*TGTIQA
Trigger: TGCCTGGATAGTCCCAGTTCATCCCCAGGGAGAGGC...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGCATGGGGTTAATCTCTaGCCAGAGGCTGTGGCAGTG +
Preference number: 2 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGHGVNL*PEAVAV
Trigger: CACTGCCACAGCCTCTGGCCAGAGATTAACCCCATG...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCGTACACACGAGTGGGTaGGTCACTGTGTACTGTGGG +
Preference number: 2 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVVHTSG*VTVYCG
Trigger: CCCACAGTACACAGTGACCCACCCACTCGTGTGTAC...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR TCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAAGGCAGTTTGGGCTATaGTGGCCTCTGCCTCTCCCT +
Preference number: 2 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSRQFGL*WPLPLP
Trigger: AGGGAGAGGCAGAGGCCATCATAGCCCAAACTGCCT...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR GCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTTACCCAGCTGTGATCTaGAGGCATCCTGACCCCAAC +
Preference number: 2 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLYPAVI*RHPDPN
Trigger: GTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTA...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTACAGGAAAGAGGCTTTaGGAAACAGTCCAGGCTGAG +
Preference number: 2 (lower is better)
Translates to: GLQASQNPEKPMESGAGLTGKRL*ETVQAE
Trigger: CTCAGCCTGGACTGTTTCCCAAAGCCTCTTTCCTGT...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAAGTCTTAGGAGAGCCTaGGAGGTAGCCAAGGTCTCC +
Preference number: 2 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSSLRRA*EVAKVS
Trigger: GGAGACCTTGGCTACCTCCCAGGCTCTCCTAAGACT...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTTCTTCCTACACTTTCTaGGGTGGTTCTGGAGGGCAA +
Preference number: 2 (lower is better)
Translates to: GLQASQNPEKPMESGAGLSSYTF*GGSGGQ
Trigger: TTGCCCTCCAGAACCACCCCAGAAAGTGTAGGAAGA...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTAAAGCCTATGGAAAGTaGAGCTGGCCTTGCCTCTCC +
Preference number: 2 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLKAYGK*SWPCLS
Trigger: GGAGAGGCAAGGCCAGCTCCACTTTCCATAGGCTTT...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAAAAGCCTATGGAAAGTaGAGCTGGCCTTGCCTCTCC +
Preference number: 2 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSKAYGK*SWPCLS
Trigger: GGAGAGGCAAGGCCAGCTCCACTTTCCATAGGCTTT...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTACAGGAAAGAGGCTTTaGGAAACAGTCCAGGCTGAG +
Preference number: 2 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLTGKRL*ETVQAE
Trigger: CTCAGCCTGGACTGTTTCCCAAAGCCTCTTTCCTGT...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR TCA 72 bp GCCAGTCTCCTGAGGCCGACCCCTCCTACCCAGCTGTaGTCTGCAGGCATCCTGACCCCAACTTGCCCTGCA +
Preference number: 3 (lower is better)
Translates to: ASLLRPTPPTQL*SAGILTPTCPA
Trigger: TGCAGGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGCCTCAGGAGACTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR GCA 72 bp CTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTaGCCTCCACACCACACAGCGGGCGGCGAGTGTGTT +
Preference number: 3 (lower is better)
Translates to: LSGVVLEGKRSH*PPHHTAGGECV
Trigger: AACACACTCGCCGCCCGCTGTGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 72 bp GAGGAGTCAGGAACAAGGGTGGGCAATGGGGTAAGCTaGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGG +
Preference number: 3 (lower is better)
Translates to: EESGTRVGNGVS*PHTGCAVPGLG
Trigger: CCCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTTGTTCCTGACTCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR TCA 72 bp ATGGAAAGTGGAGCTGGCCTTGCCTCTCCCTGGGGATaGACTGGGACTATCCAGGCACTCCCACCTCCCTCA +
Preference number: 3 (lower is better)
Translates to: MESGAGLASPWG*TGTIQALPPPS
Trigger: TGAGGGAGGTGGGAGTGCCTGGATAGTCCCAGTTCATCCCCAGGGAGAGGCAAGGCCAGCTCCACTTTCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR GCA 72 bp CAGTACCCGGGTTGGGGTAGGGGACAGGGAAGGCTGTaGTATGTGCAGAATGCGGCTGGTCCTTTCTCGTGT +
Preference number: 3 (lower is better)
Translates to: QYPGWGRGQGRL*YVQNAAGPFSC
Trigger: ACACGAGAAAGGACCAGCCGCATTCTGCACATAGCACAGCCTTCCCTGTCCCCTACCCCAACCCGGGTACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR TCA 72 bp CGTGTTTTTCAGCTGCAGCAAGTCTGTGGACCTTGGTaGCTTCTAGGCAGGAGCCAGGCCAGGTGTGGGCTT +
Preference number: 3 (lower is better)
Translates to: RVFQLQQVCGPW*LLGRSQARCGL
Trigger: AAGCCCACACCTGGCCTGGCTCCTGCCTAGAAGTCACCAAGGTCCACAGACTTGCTGCAGCTGAAAAACACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 72 bp GATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTaGAGGGCAAGCGCAGTCACTGCCCTCCACACCACA +
Preference number: 3 (lower is better)
Translates to: DRTVFLHFLGWF*RASAVTALHTT
Trigger: TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 72 bp GGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTaGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCAC +
Preference number: 3 (lower is better)
Translates to: GCDRTVFLHFLG*FWRASAVTALH
Trigger: GTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CAA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAATACAGGGCCCCAGGTaGACAGGAAAGAGGCTTTGG +
Preference number: 3 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGIQGPR*TGKRLW
Trigger: CCAAAGCCTCTTTCCTGTCAACCTGGGGCCCTGTAT...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CAA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGACCTCAGGTCAAGGGTaGGACCTTTATCGACAACCC +
Preference number: 3 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMTSGQG*DLYRQP
Trigger: GGGTTGTCGATAAAGGTCCAACCCTTGACCTGAGGT...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 72 bp CAGGGTGCAGAGAGTGACACTGTACACACGAGTGGGTaGGTCACTGTGTACTGTGGGGAGATCATGGGGTTA +
Preference number: 3 (lower is better)
Translates to: QGAESDTVHTSG*VTVYCGEIMGL
Trigger: TAACCCCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCACTCTCTGCACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 72 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTaGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCC +
Preference number: 3 (lower is better)
Translates to: RKVVIGLSSYTF*GGSGGQAQSLP
Trigger: GGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 72 bp GGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTaGACCTTGGTGACTTCTAGGCAGGAGCCAGGCCAG +
Preference number: 3 (lower is better)
Translates to: GPFSCFSAAASL*TLVTSRQEPGQ
Trigger: CTGGCCTGGCTCCTGCCTAGAAGTCACCAAGGTCCACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR TCA 72 bp CTGCCCCTAGGACACATGCCTGAACAGGCAGCTAGTTaGGACCATAGAAGGCCTCAGGAGAGATATGGCACA +
Preference number: 3 (lower is better)
Translates to: LPLGHMPEQAAS*DHRRPQERYGT
Trigger: TGTGCCATATCTCTCCTGAGGCCTTCTATGGTCTCAACTAGCTGCCTGTTCAGGCATGTGTCCTAGGGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR TCA 72 bp AGAGACCCTTCTGGGTCTTCAGGCTTCTCAGAACCCTaGAAAGCCTATGGAAAGTGGAGCTGGCCTTGCCTC +
Preference number: 3 (lower is better)
Translates to: RDPSGSSGFSEP*KAYGKWSWPCL
Trigger: GAGGCAAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACCCAGAAGGGTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 72 bp GGGACAGGGAAGGCTGTGCTATGTGCAGAATGCGGCTaGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCT +
Preference number: 3 (lower is better)
Translates to: GTGKAVLCAECG*SFLVFFSCSKS
Trigger: AGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACATAGCACAGCCTTCCCTGTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CAA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACAGCTATTCTAAGTTGTTaGAGAGGGGAACACAGAAAG +
Preference number: 3 (lower is better)
Translates to: HFLGWFWRASAVTALHTTAILSC*RGEHRK
Trigger: CTTTCTGTGTTCCCCTCTCAAACAACTTAGAATAGC...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CAA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGTGGGGCTATTCTAAGTaGTTTGAGAGGGGAACACAG +
Preference number: 3 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMWGYSK*FERGTQ
Trigger: CTGTGTTCCCCTCTCAAACAACTTAGAATAGCCCCA...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CAA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTCGGGCGGCGAGTGTGTaGCTTATGTGCAGTCCTAGG +
Preference number: 3 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLRAASV*LMCSPR
Trigger: CCTAGGACTGCACATAAGCAACACACTCGCCGCCCG...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR TCA 72 bp TTTCTAGTGCAGAAAGCAAGGGCAGGGTGCAGAGAGTaGCACTGTACACACGAGTGGGTGGGTCACTGTGTA +
Preference number: 3 (lower is better)
Translates to: FLVQKARAGCRE*HCTHEWVGHCV
Trigger: TACACAGTGACCCACCCACTCGTGTGTACAGTGTCACTCTCTGCACCCTGCCCTTGCTTTCTGCACTAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CAA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGCTTCAGGGCCCAGACTaGGCTTACATGTGCTCAGAT +
Preference number: 3 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVLQGPD*AYMCSD
Trigger: ATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAG...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CAA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGCTATTCTAAGTTGTTaGAGAGGGGAACACAGAAAG +
Preference number: 3 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMAILSC*RGEHRK
Trigger: CTTTCTGTGTTCCCCTCTCAAACAACTTAGAATAGC...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR-3UTR CAA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGTGGGGCTATTCTAAGTaGTTTGAGAGGGGAACACAG +
Preference number: 3 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVWGYSK*FERGTQ
Trigger: CTGTGTTCCCCTCTCAAACAACTTAGAATAGCCCCA...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CCA 72 bp CAAAGAAACAGCATGCCTAGACCTCAGGTCAAGGGTTaGACCTTTATCGACAACCCTGTAAACTCTTCCAGA +
Preference number: 3 (lower is better)
Translates to: QRNSMPRPQVKG*TFIDNPVNSSR
Trigger: TCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCCTTGACCTGAGGTCTAGGCATGCTGTTTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTCTTGGTGAGGCCACCTaGGGCCCCCGGGGGCCTGTC +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVLGEAT*GPRGPV
Trigger: GACAGGCCCCCGGGGGCCTCAGGTGGCCTCACCAAG...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGCCGAGGCCGCTCGGCTaGCCGCTAGGTGGTGGTAGT +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGPRPLG*PLGGGS
Trigger: ACTACCACCACCTAGCGGCCAGCCGAGCGGCCTCGG...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGCAGGGCAGGGCGCTTTaGCGGGGAGTCCTGACGGTT +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGQGRAL*RGVLTV
Trigger: AACCGTCAGGACTCCCCGGCAAAGCGCCCTGCCCTG...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GCCGACCCCTCCTACCCAGCTGTGATCTGCAGGCATCCTGACCCCAACTTGCCCACCTTGCCCTTTCCCTaGTGGGTCCACAGCGGGGGC +
Preference number: 4 (lower is better)
Translates to: ADPSYPAVICRHPDPNLPTLPFP*WVHSGG
Trigger: GCCCCCGCTGTGGACCCAGCAGGGAAAGGGCAAGGT...GGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTCTTGGTGAGCGTGGCTaGGTGAGCCTCCCGCTCCCG +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVLGERG*VSLPLP
Trigger: CGGGAGCGGGAGGCTCACCCAGCCACGCTCACCAAG...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGGTGGGCTGCAGTGGCTaGACCCTCGGAGCCATCTTC +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGVGCSG*TLGAIF
Trigger: GAAGATGGCTCCGAGGGTCCAGCCACTGCAGCCCAC...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGGCTGGACTGGATGCCTaGGGCCACAGAGTAGTTGCG +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGAGLDA*GHRVVA
Trigger: CGCAACTACTCTGTGGCCTCAGGCATCCAGTCCAGC...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGCTTGGTGAGCGTGGCTaGGTGAGCCTCCCGCTCCCG +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGLGERG*VSLPLP
Trigger: CGGGAGCGGGAGGCTCACCCAGCCACGCTCACCAAG...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGCTGAGGAGATGCGCCTaGCTGCCCAGATCACTTCCC +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGLRRCA*LPRSLP
Trigger: GGGAAGTGATCTGGGCAGCCAGGCGCATCTCCTCAG...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACATCAAGGCCTGTGGGCTaGGAGCTGGGGCCTTCCCAC +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTSRPVG*ELGPSH
Trigger: GTGGGAAGGCCCCAGCTCTCAGCCCACAGGCCTTGA...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAGTGAGCGTGGCTGGGTaGGCCTCCCGCTCCCGCTGC +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGVSVAG*ASRSRC
Trigger: GCAGCGGGAGCGGGAGGCTCACCCAGCCACGCTCAC...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGGGAGGAAGGCAGCCCTaGGTCTGGAGAGTCAAACTC +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGGGRQP*VWRVKL
Trigger: GAGTTTGACTCTCCAGACTCAGGGCTGCCTTCCTCC...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GCCGACCCCTCCTACCCAGCTGTGATCTGCAGGCATCCTGACCCCAACTTGCCCCTCCCGAGGGTTTCCTaGCCTCTGCCTGTTGCTGCA +
Preference number: 4 (lower is better)
Translates to: ADPSYPAVICRHPDPNLPLPRVS*PLPVAA
Trigger: TGCAGCAACAGGCAGAGGGCAGGAAACCCTCGGGAG...GGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGGTGCCACCGCTCTTTTaGTGGTGGCAGTGGATGCAG +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGVPPLF*WWQWMQ
Trigger: CTGCATCCACTGCCACCAGCAAAAGAGCGGTGGCAC...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGGCAGGCCTTCCACTCTaGCAACACCTGCTGGTACCT +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGAGLPL*QHLLVP
Trigger: AGGTACCAGCAGGTGTTGGCAGAGTGGAAGGCCTGC...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTATGGTGGAATCCCGGTaGACGAGGCGCTGCACGTGG +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVMVESR*TRRCTW
Trigger: CCACGTGCAGCGCCTCGTGCACCGGGATTCCACCAT...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GCCGACCCCTCCTACCCAGCTGTGATCTGCAGGCATCCTGACCCCAACTTGCCCTGCGAGCTCCTGGCCTaGTTCAAGCTCACTGGCAGG +
Preference number: 4 (lower is better)
Translates to: ADPSYPAVICRHPDPNLPCELLA*FKLTGR
Trigger: CCTGCCAGTGAGCTTGAAGCAGGCCAGGAGCTCGCA...GGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTCTGTGGGCTGAGAGCTaGGGCCTTCCCACCGGTAGA +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVLWAES*GLPTGR
Trigger: TCTACCGGTGGGAAGGCCCCAGCTCTCAGCCCACAG...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGGGTGTGTCCTCACTGTaGACAGGTGGCGACAGTAGG +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGGVSSL*TGGDSR
Trigger: CCTACTGTCGCCACCTGTCCACAGTGAGGACACACC...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTACGAGGCGCTGCACGTaGCTATCGATGCTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVTRRCT*LSMLLP
Trigger: GGGCAGCAGCATCGATAGCCACGTGCAGCGCCTCGT...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACACGGGGTCCCAGCTCCTaGCTCCTGTTCCCGCTTTGG +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTRGPSS*LLFPLW
Trigger: CCAAAGCGGGAACAGGAGCCAGGAGCTGGGACCCCG...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGTGGATGCAGACGATCTaGCTGAAGGGCACCACCAAG +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGWMQTI*LKGTTK
Trigger: CTTGGTGGTGCCCTTCAGTCAGATCGTCTGCATCCA...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GCCGACCCCTCCTACCCAGCTGTGATCTGCAGGCATCCTGACCCCAACTTGCCCGGAATGCAGCTGCAGTaGCTGGGGGTTGCATATGGG +
Preference number: 4 (lower is better)
Translates to: ADPSYPAVICRHPDPNLPGMQLQ*LGVAYG
Trigger: CCCATATGCAACCCCCAGTCACTGCAGCTGCATTCC...GGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGGCAGTGACTGGGGGTTaGATATGGGGAGCTACTGGA +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGAVTGG*IWGATG
Trigger: TCCAGTAGCTCCCCATATGCAACCCCCAGTCACTGC...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GCCGACCCCTCCTACCCAGCTGTGATCTGCAGGCATCCTGACCCCAACTTGCCCGTGCCTCATCTAGGCTaGACTGGATGCCTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: ADPSYPAVICRHPDPNLPVPHLG*TGCLRP
Trigger: TGGCCTCAGGCATCCAGTCCAGCCTAGATGAGGCAC...GGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTATCCGCAGGATCTCCTaGGCATCATGCCGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVIRRIS*ASCRSA
Trigger: GGCTGAGCGGCATGATGCCCAGGAGATCCTGCGGAT...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGAGCATCTGCACCTTGTaGACCAAGTCCCGGGCAATC +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGSICTL*TKSRAI
Trigger: GATTGCCCGGGACTTGGTCCACAAGGTGCAGATGCT...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CAA 72 bp AGGAGCCAGGCCAGGTGTGGGCTTCAGGGCCCAGACTaGGCTTACATGTGCTCAGATGGTGGGGACATGGGG +
Preference number: 4 (lower is better)
Translates to: RSQARCGLQGPD*AYMCSDGGDMG
Trigger: CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACACCTGGCCTGGCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGAATGCAGCTGCAGTaGCTGGGGGTTGCATATGGG +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVGMQLQ*LGVAYG
Trigger: CCCATATGCAACCCCCAGTCACTGCAGCTGCATTCC...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGCTTGGTGAGGCCACCTaGGGCCCCCGGGGGCCTGTC +
Preference number: 4 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWLGEAT*GPRGPV
Trigger: GACAGGCCCCCGGGGGCCTCAGGTGGCCTCACCAAG...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACAGAAGGGCTTCTTGGCTaGCTCCCGAGGGTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTEGLLG*LPRVSC
Trigger: GCAGGAAACCCTCGGGAGGCAGCCAAGAAGCCCTTC...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGCAGGGCAGGGCGCTTTaGCGGGGAGTCCTGACGGTT +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMQGRAL*RGVLTV
Trigger: AACCGTCAGGACTCCCCGGCAAAGCGCCCTGCCCTG...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GCCGACCCCTCCTACCCAGCTGTGATCTGCAGGCATCCTGACCCCAACTTGCCCAACTCCACAGACTGCTaGTCTGCAGCTGCTATGCCC +
Preference number: 4 (lower is better)
Translates to: ADPSYPAVICRHPDPNLPNSTDC*SAAAMP
Trigger: GGGCATAGCAGCTGCAGAGCAGCAGTCTGTGGAGTT...GGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTCCACCGCTCTTTTGCTaGTGGCAGTGGATGCAGACG +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVPPLFC*WQWMQT
Trigger: CGTCTGCATCCACTGCCACCAGCAAAAGAGCGGTGG...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GCCGACCCCTCCTACCCAGCTGTGATCTGCAGGCATCCTGACCCCAACTTGCCCTCATCTAGGCTGGACTaGATGCCTGAGGCCACAGAG +
Preference number: 4 (lower is better)
Translates to: ADPSYPAVICRHPDPNLPSSRLD*MPEATE
Trigger: CTCTGTGGCCTCAGGCATCCAGTCCAGCCTAGATGA...GGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGACAGCAGCTTTTCTTTaGCCGCGTCCTCTGCGCTGC +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGTAAFL*PRPLRC
Trigger: GCAGCGCAGAGGACGCGGTCAAAGAAAAGCTGCTGT...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGATCCACACATCCTTGGTaGGGCCACCTGAGGCCCCCG +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGSTHPW*GHLRPP
Trigger: CGGGGGCCTCAGGTGGCCTCACCAAGGATGTGTGGA...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACATCGGATTGGGAGCTGTaGGGTTCCGCGAGCAGATCA +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTSDWEL*GSASRS
Trigger: TGATCTGCTCGCGGAACCTCACAGCTCCCAATCCGA...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGAGGGCCAGACGTCCTTaGGAATCTCGTGTTCCACGC +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGRARRP*ESRVPR
Trigger: GCGTGGAACACGAGATTCGCAAGGACGTCTGGCCCT...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGCGTGGCTATCGATGCTaGTGCCCGAGGAGAACTTGG +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGRGYRC*CPRRTW
Trigger: CCAAGTTCTCCTCGGGCAGCAGCATCGATAGCCACG...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGTTGCGGTCACATCTCTaGACATCCTTGTCTATGCGG +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGLRSHL*TSLSMR
Trigger: CCGCATAGACAAGGATGTGCAGAGATGTGACCGCAA...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGGTGTTTCAAGGCCTGTaGGCTGAGAGCTGGGGCCTT +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGVFQGL*AESWGL
Trigger: AAGGCCCCAGCTCTCAGCCCACAGGCCTTGAAACAC...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGTGCGTTTCCGTAGCTTaGGGAAAACCTTGCCCTTTC +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGCVSVA*GKPCPF
Trigger: GAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCA...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTCGGGGGCCTGTCTGGTaGAATGATGTTGTGATGCAC +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVRGPVW*NDVVMH
Trigger: GTGCATCACAACATCATTCCACCAGACAGGCCCCCG...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTTCTGCCAACACCTGCTaGTACCTTGCTGCCACTGCT +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVSANTC*YLAATA
Trigger: AGCAGTGGCAGCAAGGTACCAGCAGGTGTTGGCAGA...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGACGAGGCGCTGCACGTaGCTATCGATGCTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMTRRCT*LSMLLP
Trigger: GGGCAGCAGCATCGATAGCCACGTGCAGCGCCTCGT...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGCGGGGTCCCAGCTCCTaGCTCCTGTTCCCGCTTTGG +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWRGPSS*LLFPLW
Trigger: CCAAAGCGGGAACAGGAGCCAGGAGCTGGGACCCCG...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGGGTCCCGGGAAAGTGTaGGCTGCAGTGGCTGGACCC +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWGPGKV*AAVAGP
Trigger: GGGTCCAGCCACTGCAGCCCACACTTTCCCGGGACC...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGTCCTGGCCTGGATCGTaGGGTCCCGGGAAAGTGTGG +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMSWPGS*GPGKVW
Trigger: CCACACTTTCCCGGGACCCCACGATCCAGGCCAGGA...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CAA 72 bp GAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTaGGTGGAGACTGAGGAGTCAGGAACAAGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: ESLRQAHIGHPC*VETEESGTRVG
Trigger: GCCCACCCTTGTTCCTGACTCCTCAGTCTCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAGCACGGCGTCTTAGCTaGTGCAGGAGGCAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGARRLS*CRRQAS
Trigger: GGAGGCTTGCCTCCTGCATCAGCTAAGACGCCGTGC...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGGAGCAGGCGTGTTCTTaGGTTCTGGTGCAGAGACTC +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGEQACS*VLVQRL
Trigger: GAGTCTCTGCACCAGAACTCAAGAACACGCCTGCTC...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACACCCATTCTCCAGACATaGCAGGAAGGACAGCAGGTG +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTPILQT*QEGQQV
Trigger: CACCTGCTGTCCTTCCTGTCATGTCTGGAGAATGGG...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGCCCATTCTCCAGACATaGCAGGAAGGACAGCAGGTG +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGPILQT*QEGQQV
Trigger: CACCTGCTGTCCTTCCTGTCATGTCTGGAGAATGGG...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGTGAGCGTGGCTGGGTaGGCCTCCCGCTCCCGCTGC +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSVSVAG*ASRSRC
Trigger: GCAGCGGGAGCGGGAGGCTCACCCAGCCACGCTCAC...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGAGGTAGCCAGGGACTaGCTCCATGTCCTCCTTCGG +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMEVARD*LHVLLR
Trigger: CCGAAGGAGGACATGGAGGCAGTCCCTGGCTACCTC...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTCAATGGACCGAATGCTaGTGCGTTTCCGTAGCTTGG +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVQWTEC*CVSVAW
Trigger: CCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTG...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGCACAGAGCAATGATGTaGCTGCTATCTTCATGCACG +
Preference number: 4 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGHRAMM*LLSSCT
Trigger: CGTGCATGAAGATAGCAGCCACATCATTGCTCTGTG...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GCCGACCCCTCCTACCCAGCTGTGATCTGCAGGCATCCTGACCCCAACTTGCCCCGTGTTCTTGAGTTCTaGTGCAGAGACTCCACGTAC +
Preference number: 4 (lower is better)
Translates to: ADPSYPAVICRHPDPNLPRVLEF*CRDSTY
Trigger: GTACGTGGAGTCTCTGCACCAGAACTCAAGAACACG...GGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGTGTAGTGGCGGCCTCTaGATGCCATCCTGGCTCACC +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMCSGGL*MPSWLT
Trigger: GGTGAGCCAGGATGGCATCCAGAGGCCGCCACTACA...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAAGGCAGGAGGAGCCCTaGCTACACAGGGGCTCTAGG +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGRQEEP*LHRGSR
Trigger: CCTAGAGCCCCTGTGTAGCCAGGGCTCCTCCTGCCT...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACACGGGGGCCTGTCTGGTaGAATGATGTTGTGATGCAC +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTRGPVW*NDVVMH
Trigger: GTGCATCACAACATCATTCCACCAGACAGGCCCCCG...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACATCTGCCAACACCTGCTaGTACCTTGCTGCCACTGCT +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTSANTC*YLAATA
Trigger: AGCAGTGGCAGCAAGGTACCAGCAGGTGTTGGCAGA...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGTGGAATGATGTTGTaGTGCACCAATGCAGACAGG +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVGGMML*CTNADR
Trigger: CCTGTCTGCATTGGTGCATCACAACATCATTCCACC...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGTCCACACATCCTTGGTaGGGCCACCTGAGGCCCCCG +
Preference number: 4 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGSTHPW*GHLRPP
Trigger: CGGGGGCCTCAGGTGGCCTCACCAAGGATGTGTGGA...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGACAGGACAAAGTGCTCTaGGGAGATGCGCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGQDKVL*GDAPGC
Trigger: GCAGCCAGGCGCATCTCCTCAGAGCACTTTGTCCTG...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAGAAGGGCTTCTTGGCTaGCTCCCGAGGGTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGEGLLG*LPRVSC
Trigger: GCAGGAAACCCTCGGGAGGCAGCCAAGAAGCCCTTC...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGACCTTGCCCTTTCCCTaGTGGGTCCACAGCGGGGGC +
Preference number: 4 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGTLPFP*WVHSGG
Trigger: GCCCCCGCTGTGGACCCAGCAGGGAAAGGGCAAGGT...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGCAATGGACCGAATGCTaGTGCGTTTCCGTAGCTTGG +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGQWTEC*CVSVAW
Trigger: CCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTG...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGCAATCTGCCTCTTCATaGTCTCACACAGCAGCCGGA +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGQSASS*SHTAAG
Trigger: TCCGGCTGCTGTGTGAGAGCATGAAGAGGCAGATTG...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGTTGTGATGCACCAATaGAGACAGGTGTGTCCTCAC +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVVVMHQ*RQVCPH
Trigger: GTGAGGACACACCTGTCTGCATTGGTGCATCACAAC...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTTCAAACTCCACAGACTaGTGCTCTGCAGCTGCTATG +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVSNSTD*CSAAAM
Trigger: CATAGCAGCTGCAGAGCAGCAGTCTGTGGAGTTTGA...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAAGGCCACAGAGTAGTTaGGGGAGGAAGGCAGCCCTG +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGRPQSS*GRKAAL
Trigger: CAGGGCTGCCTTCCTCCCGCAACTACTCTGTGGCCT...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGTGCGGCGCACACAGCTaGGAGCTCCTGGCCTGCTTC +
Preference number: 4 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGCGAHS*ELLACF
Trigger: GAAGCAGGCCAGGAGCTCGCAGCTGTGTGCGCCGCA...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTTTGCGGTCACATCTCTaGACATCCTTGTCTATGCGG +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVLRSHL*TSLSMR
Trigger: CCGCATAGACAAGGATGTGCAGAGATGTGACCGCAA...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGATCTCCTGGGCATCATaGCGCTCAGCCCGCTCGTTG +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWISWAS*RSARSL
Trigger: CAACGAGCGGGCTGAGCGGCATGATGCCCAGGAGAT...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTCGTGTTCTTGAGTTCTaGTGCAGAGACTCCACGTAC +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVRVLEF*CRDSTY
Trigger: GTACGTGGAGTCTCTGCACCAGAACTCAAGAACACG...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACAGTCCCGTTCATGAGTTaGTTGGGAGTCCACTTCAGG +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTVPFMS*LGVHFR
Trigger: CCTGAAGTGGACTCCCAACCAACTCATGAACGGGAC...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGCCACCGCTCTTTTGCTaGTGGCAGTGGATGCAGACG +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMPPLFC*WQWMQT
Trigger: CGTCTGCATCCACTGCCACCAGCAAAAGAGCGGTGG...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTGCACGGCGTCTTAGCTaGTGCAGGAGGCAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: GLQASQNPEKPMESGAGLARRLS*CRRQAS
Trigger: GGAGGCTTGCCTCCTGCATCAGCTAAGACGCCGTGC...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGACGGATACGGTGCCTCTaGACCAGCTCATCAGCAGAG +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGRIRCL*TSSSAE
Trigger: CTCTGCTGATGAGCTGGTTCAGAGGCACCGTATCCG...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGTCACCAGCACAAGCGTaGCACCGCTCTTTTGCTGGT +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMSPAQA*HRSFAG
Trigger: ACCAGCAAAAGAGCGGTGGCACGCTTGTGCTGGTGA...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACACATCAATGGACCGAATaGTGCTGCGTTTCCGTAGCT +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTHQWTE*CCVSVA
Trigger: AGCTACGGAAACGCAGCAGCATTCGGTCCATTGATG...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGCAGTGACTGGGGGTTaGATATGGGGAGCTACTGGA +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMAVTGG*IWGATG
Trigger: TCCAGTAGCTCCCCATATGCAACCCCCAGTCACTGC...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAAGGGCCAGACGTCCTTaGGAATCTCGTGTTCCACGC +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGRARRP*ESRVPR
Trigger: GCGTGGAACACGAGATTCGCAAGGACGTCTGGCCCT...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGCGTGGCTATCGATGCTaGTGCCCGAGGAGAACTTGG +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWRGYRC*CPRRTW
Trigger: CCAAGTTCTCCTCGGGCAGCAGCATCGATAGCCACG...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGATGGTGGAATCCCGGTaGACGAGGCGCTGCACGTGG +
Preference number: 4 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGMVESR*TRRCTW
Trigger: CCACGTGCAGCGCCTCGTGCACCGGGATTCCACCAT...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGAACTCCACAGACTGCTaGTCTGCAGCTGCTATGCCC +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMNSTDC*SAAAMP
Trigger: GGGCATAGCAGCTGCAGAGCAGCAGTCTGTGGAGTT...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGTCCTTGTCTATGCGGTaGAGATTTAAGGCCACGGTG +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGSLSMR*RFKATV
Trigger: CACCGTGGCCTTAAATCTGCACCGCATAGACAAGGA...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGCTGTGGGCTGAGAGCTaGGGCCTTCCCACCGGTAGA +
Preference number: 4 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWLWAES*GLPTGR
Trigger: TCTACCGGTGGGAAGGCCCCAGCTCTCAGCCCACAG...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGCCGCTCTTTTGCTGGTaGCAGTGGATGCAGACGATC +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMPLFCW*QWMQTI
Trigger: GATCGTCTGCATCCACTGCCACCAGCAAAAGAGCGG...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACATGCGTTTCCGTAGCTTaGGGAAAACCTTGCCCTTTC +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTCVSVA*GKPCPF
Trigger: GAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCA...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGAGGCAGGAGGAGCCCTaGCTACACAGGGGCTCTAGG +
Preference number: 4 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVRQEEP*LHRGSR
Trigger: CCTAGAGCCCCTGTGTAGCCAGGGCTCCTCCTGCCT...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGGGTGTGTCCTCACTGTaGACAGGTGGCGACAGTAGG +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWGVSSL*TGGDSR
Trigger: CCTACTGTCGCCACCTGTCCACAGTGAGGACACACC...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGGTTCCCGCTTTGGTTTaGAATCTTCCAGGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGVPALV*NLPGPE
Trigger: CTCAGGACCTGGAAGATTCCAAACCAAAGCGGGAAC...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGTCATCTAGGCTGGACTaGATGCCTGAGGCCACAGAG +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMSSRLD*MPEATE
Trigger: CTCTGTGGCCTCAGGCATCCAGTCCAGCCTAGATGA...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGGTGGGCTGCAGTGGCTaGACCCTCGGAGCCATCTTC +
Preference number: 4 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWVGCSG*TLGAIF
Trigger: GAAGATGGCTCCGAGGGTCCAGCCACTGCAGCCCAC...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGTATGTCCGGGGTAGATaGTCCGGAACACGTAGTCCG +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWYVRGR*SGTRSP
Trigger: CGGACTACGTGTTCCGGATCATCTACCCCGGACATA...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGGCTGGACTGGATGCCTaGGGCCACAGAGTAGTTGCG +
Preference number: 4 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWAGLDA*GHRVVA
Trigger: CGCAACTACTCTGTGGCCTCAGGCATCCAGTCCAGC...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGCCAGGGCCAGGGCGATaGACAGGACAAAGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVPGPGR*TGQSAL
Trigger: CAGAGCACTTTGTCCTGTTCATCGCCCTGGCCCTGG...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGCCAGGGCCAGGGCGATaGACAGGACAAAGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWPGPGR*TGQSAL
Trigger: CAGAGCACTTTGTCCTGTTCATCGCCCTGGCCCTGG...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGTGTTGCTGCAACTCCTaGACCTTGTGGCAGATATCT +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGCCCNS*TLWQIS
Trigger: AGATATCTGCCACAAGGTGCAGGAGTTGCAGCAACA...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGGTTCTTGAGTTCTGGTaGAGAGACTCCACGTACTCA +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGVLEFW*RDSTYS
Trigger: TGAGTACGTGGAGTCTCTGCACCAGAACTCAAGAAC...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCGAGGTAGCCAGGGACTaGCTCCATGTCCTCCTTCGG +
Preference number: 4 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVEVARD*LHVLLR
Trigger: CCGAAGGAGGACATGGAGGCAGTCCCTGGCTACCTC...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGCTCCATCTCCTTCTTaGTCATGCCAAACTTGTAGT +
Preference number: 4 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVAPSPS*SCQTCS
Trigger: ACTACAAGTTTGGCATGAGCAAGAAGGAGATGGAGC...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGCTAGGCTGGACTGGATaGCTGAGGCCACAGAGTAGT +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWLGWTG*LRPQSS
Trigger: ACTACTCTGTGGCCTCAGGCATCCAGTCCAGCCTAG...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTGCGAGCTCCTGGCCTaGTTCAAGCTCACTGGCAGG +
Preference number: 4 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVCELLA*FKLTGR
Trigger: CCTGCCAGTGAGCTTGAAGCAGGCCAGGAGCTCGCA...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGTTCTATAGTATAGGCTaGGGCGCACACAGCTGCGAG +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMFYSIG*GAHSCE
Trigger: CTCGCAGCTGTGTGCGCCGCAGCCTATACTATAGAA...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGGCACATCCTTGTCTATaGGGTGCAGATTTAAGGCCA +
Preference number: 4 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGAHPCL*GADLRP
Trigger: TGGCCTTAAATCTGCACCGCATAGACAAGGATGTGC...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGATCTCCTGGGCATCATaGCGCTCAGCCCGCTCGTTG +
Preference number: 4 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWISWAS*RSARSL
Trigger: CAACGAGCGGGCTGAGCGGCATGATGCCCAGGAGAT...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACATTGTCTATGAGCATCTaGACCTTGTGGACCAAGTCC +
Preference number: 4 (lower is better)
Translates to: HFLGWFWRASAVTALHTTLSMSI*TLWTKS
Trigger: GGACTTGGTCCACAAGGTGCAGATGCTCATAGACAA...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTGGTCCCGGGAAAGTGTaGGCTGCAGTGGCTGGACCC +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLGPGKV*AAVAGP
Trigger: GGGTCCAGCCACTGCAGCCCACACTTTCCCGGGACC...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTCTGAGGAGATGCGCCTaGCTGCCCAGATCACTTCCC +
Preference number: 4 (lower is better)
Translates to: GLQASQNPEKPMESGAGLLRRCA*LPRSLP
Trigger: GGGAAGTGATCTGGGCAGCCAGGCGCATCTCCTCAG...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGAGCATCTGCACCTTGTaGACCAAGTCCCGGGCAATC +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWSICTL*TKSRAI
Trigger: GATTGCCCGGGACTTGGTCCACAAGGTGCAGATGCT...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CAA 72 bp AGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTaGCCTCTCCCTGGGGATGAACTGGGACTATCCAGG +
Preference number: 4 (lower is better)
Translates to: RTLKSLWKVELA*PLPGDELGLSR
Trigger: CCTGGATAGTCCCAGTTCATCCCCAGGGAGAGGCAAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
3UTR CAA 72 bp TTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGGACCTaGGTGACTTCTAGGCAGGAGCCAGGCCAGGTGTGG +
Preference number: 4 (lower is better)
Translates to: FSCFSAAASLWT*VTSRQEPGQVW
Trigger: CCACACCTGGCCTGGCTCCTGCCTAGAAGTCACCAAGGTCCACAGACTTGCTGCAGCTGAAAAACACGAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGACAGCAGCTTTTCTTTaGCCGCGTCCTCTGCGCTGC +
Preference number: 4 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGTAAFL*PRPLRC
Trigger: GCAGCGCAGAGGACGCGGTCAAAGAAAAGCTGCTGT...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTCGGATACGGTGCCTCTaGACCAGCTCATCAGCAGAG +
Preference number: 4 (lower is better)
Translates to: GLQASQNPEKPMESGAGLRIRCL*TSSSAE
Trigger: CTCTGCTGATGAGCTGGTTCAGAGGCACCGTATCCG...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTCCCTCTGCCTGTTGCTaGAACTCCTGCACCTTGTGG +
Preference number: 4 (lower is better)
Translates to: GLQASQNPEKPMESGAGLPSACC*NSCTLW
Trigger: CCACAAGGTGCAGGAGTTGCAGCAACAGGCAGAGGG...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGGGGTTTCCTGCCCTCTaGCTGTTGCTGCAACTCCTG +
Preference number: 4 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVGFPAL*LLLQLL
Trigger: CAGGAGTTGCAGCAACAGGCAGAGGGCAGGAAACCC...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCGGGTTTCCTGCCCTCTaGCTGTTGCTGCAACTCCTG +
Preference number: 4 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVGFPAL*LLLQLL
Trigger: CAGGAGTTGCAGCAACAGGCAGAGGGCAGGAAACCC...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGGTGCCACCGCTCTTTTaGTGGTGGCAGTGGATGCAG +
Preference number: 4 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVVPPLF*WWQWMQ
Trigger: CTGCATCCACTGCCACCAGCAAAAGAGCGGTGGCAC...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGTCAAACTCCACAGACTaGTGCTCTGCAGCTGCTATG +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMSNSTD*CSAAAM
Trigger: CATAGCAGCTGCAGAGCAGCAGTCTGTGGAGTTTGA...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTCGGGAAAGTGTGGGCTaGAGTGGCTGGACCCTCGGA +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLRESVG*SGWTLG
Trigger: TCCGAGGGTCCAGCCACTGCAGCCCACACTTTCCCG...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGCCAGGAGATCACACATaGCCTGCACGTAGCCCATAT +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWPGDHT*PARSPY
Trigger: ATATGGGCTACGTGCAGGGCATGTGTGATCTCCTGG...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCCTCTGGATGCCATCCTaGCTCACCAGCACAAGCGTG +
Preference number: 4 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVLWMPS*LTSTSV
Trigger: CACGCTTGTGCTGGTGAGCCAGGATGGCATCCAGAG...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGCTCTGGATGCCATCCTaGCTCACCAGCACAAGCGTG +
Preference number: 4 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWLWMPS*LTSTSV
Trigger: CACGCTTGTGCTGGTGAGCCAGGATGGCATCCAGAG...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCATTGCCCTTTCCCTGCTaGGTCCACAGCGGGGGCTCA +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSLPFPC*VHSGGS
Trigger: TGAGCCCCCGCTGTGGACCCAGCAGGGAAAGGGCAA...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTTTGCCCTTTCCCTGCTaGGTCCACAGCGGGGGCTCA +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLLPFPC*VHSGGS
Trigger: TGAGCCCCCGCTGTGGACCCAGCAGGGAAAGGGCAA...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGCATATGGGGAGCTACTaGAGGAACAGGAAAGGCAGG +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWHMGSY*RNRKGR
Trigger: CCTGCCTTTCCTGTTCCTCCAGTAGCTCCCCATATG...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCCCCCGGGGGCCTGTCTaGTGGAATGATGTTGTGATG +
Preference number: 4 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVPRGPV*WNDVVM
Trigger: CATCACAACATCATTCCACCAGACAGGCCCCCGGGG...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTTCCTGGCCTGGATCGTaGGGTCCCGGGAAAGTGTGG +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLSWPGS*GPGKVW
Trigger: CCACACTTTCCCGGGACCCCACGATCCAGGCCAGGA...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTGGATGCAGACGATCTaGCTGAAGGGCACCACCAAG +
Preference number: 4 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVWMQTI*LKGTTK
Trigger: CTTGGTGGTGCCCTTCAGTCAGATCGTCTGCATCCA...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGTATGTCCGGGGTAGATaGTCCGGAACACGTAGTCCG +
Preference number: 4 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGYVRGR*SGTRSP
Trigger: CGGACTACGTGTTCCGGATCATCTACCCCGGACATA...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTCAGGACAAAGTGCTCTaGGGAGATGCGCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLQDKVL*GDAPGC
Trigger: GCAGCCAGGCGCATCTCCTCAGAGCACTTTGTCCTG...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGTGTTGCTGCAACTCCTaGACCTTGTGGCAGATATCT +
Preference number: 4 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMCCCNS*TLWQIS
Trigger: AGATATCTGCCACAAGGTGCAGGAGTTGCAGCAACA...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTCTCCCGAGGGTTTCCTaGCCTCTGCCTGTTGCTGCA +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLLPRVS*PLPVAA
Trigger: TGCAGCAACAGGCAGAGGGCAGGAAACCCTCGGGAG...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTCACCAGCACAAGCGTaGCACCGCTCTTTTGCTGGT +
Preference number: 4 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVSPAQA*HRSFAG
Trigger: ACCAGCAAAAGAGCGGTGGCACGCTTGTGCTGGTGA...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAGTTGTGATGCACCAATaGAGACAGGTGTGTCCTCAC +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGVVMHQ*RQVCPH
Trigger: GTGAGGACACACCTGTCTGCATTGGTGCATCACAAC...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAAGGCCACAGAGTAGTTaGGGGAGGAAGGCAGCCCTG +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSRPQSS*GRKAAL
Trigger: CAGGGCTGCCTTCCTCCCGCAACTACTCTGTGGCCT...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGCCGCTCTTTTGCTGGTaGCAGTGGATGCAGACGATC +
Preference number: 4 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWPLFCW*QWMQTI
Trigger: GATCGTCTGCATCCACTGCCACCAGCAAAAGAGCGG...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGGTTCCCGCTTTGGTTTaGAATCTTCCAGGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWVPALV*NLPGPE
Trigger: CTCAGGACCTGGAAGATTCCAAACCAAAGCGGGAAC...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGATCTGAGTCCAAGATCTaGATGAGGGAGCGCATGTTG +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGSESKI*MRERML
Trigger: CAACATGCGCTCCCTCATCCAGATCTTGGACTCAGA...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTATCCGCAGGATCTCCTaGGCATCATGCCGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLIRRIS*ASCRSA
Trigger: GGCTGAGCGGCATGATGCCCAGGAGATCCTGCGGAT...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGAGGAAGGCAGCCCTaGGTCTGGAGAGTCAAACTC +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSGGRQP*VWRVKL
Trigger: GAGTTTGACTCTCCAGACTCAGGGCTGCCTTCCTCC...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGAGTCCAAGATCTGGATaGGGGAGCGCATGTTGGCAA +
Preference number: 4 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGSPRSG*GSACWQ
Trigger: TTGCCAACATGCGCTCCCTCATCCAGATCTTGGACT...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCACCCTCTGCCTGTTGCTaGAACTCCTGCACCTTGTGG +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSPSACC*NSCTLW
Trigger: CCACAAGGTGCAGGAGTTGCAGCAACAGGCAGAGGG...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTGCAGGCCTTCCACTCTaGCAACACCTGCTGGTACCT +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLAGLPL*QHLLVP
Trigger: AGGTACCAGCAGGTGTTGGCAGAGTGGAAGGCCTGC...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCTATAGTATAGGCTaGGGCGCACACAGCTGCGAG +
Preference number: 4 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVFYSIG*GAHSCE
Trigger: CTCGCAGCTGTGTGCGCCGCAGCCTATACTATAGAA...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGATTGTCTATGAGCATCTaGACCTTGTGGACCAAGTCC +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGLSMSI*TLWTKS
Trigger: GGACTTGGTCCACAAGGTGCAGATGCTCATAGACAA...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGGTCCCGTTCATGAGTTaGTTGGGAGTCCACTTCAGG +
Preference number: 4 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGVPFMS*LGVHFR
Trigger: CCTGAAGTGGACTCCCAACCAACTCATGAACGGGAC...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTCCCCGGGGGCCTGTCTaGTGGAATGATGTTGTGATG +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLPRGPV*WNDVVM
Trigger: CATCACAACATCATTCCACCAGACAGGCCCCCGGGG...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTGTGCCTCATCTAGGCTaGACTGGATGCCTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLVPHLG*TGCLRP
Trigger: TGGCCTCAGGCATCCAGTCCAGCCTAGATGAGGCAC...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCCCAGAACTTTCTCCATaGGTGCTGTGCGTACCCATA +
Preference number: 4 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVPELSP*VLCVPI
Trigger: TATGGGTACGCACAGCACTCATGGAGAAAGTTCTGG...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGAGCAGGCGTGTTCTTaGGTTCTGGTGCAGAGACTC +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSEQACS*VLVQRL
Trigger: GAGTCTCTGCACCAGAACTCAAGAACACGCCTGCTC...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTGGTGGAATGATGTTGTaGTGCACCAATGCAGACAGG +
Preference number: 4 (lower is better)
Translates to: GLQASQNPEKPMESGAGLGGMML*CTNADR
Trigger: CCTGTCTGCATTGGTGCATCACAACATCATTCCACC...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGATGGCTGCTATCTTCATaGACGAATTTCCTGGTGACA +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGWLLSS*TNFLVT
Trigger: TGTCACCAGGAAATTCGTGCATGAAGATAGCAGCCA...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAAACTTTCTCCATGAGTaGTGTGCGTACCCATATGTG +
Preference number: 4 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGNFLHE*CAYPYV
Trigger: CACATATGGGTACGCACAGCACTCATGGAGAAAGTT...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGCCCGGGACACAATCTaGCTCTTCATGCTCTCACAC +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSARDTI*LFMLSH
Trigger: GTGTGAGAGCATGAAGAGGCAGATTGTGTCCCGGGC...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTGCCCGGGACACAATCTaGCTCTTCATGCTCTCACAC +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLARDTI*LFMLSH
Trigger: GTGTGAGAGCATGAAGAGGCAGATTGTGTCCCGGGC...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTACTGCTGTATCCACCTaGTCCATCTCCTTCTTGCTC +
Preference number: 4 (lower is better)
Translates to: GLQASQNPEKPMESGAGLTAVST*SISFLL
Trigger: GAGCAAGAAGGAGATGGAGCAGGTGGATACAGCAGT...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCACTAGGCTGGACTGGATaGCTGAGGCCACAGAGTAGT +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSLGWTG*LRPQSS
Trigger: ACTACTCTGTGGCCTCAGGCATCCAGTCCAGCCTAG...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGGTTCTTGAGTTCTGGTaGAGAGACTCCACGTACTCA +
Preference number: 4 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGVLEFW*RDSTYS
Trigger: TGAGTACGTGGAGTCTCTGCACCAGAACTCAAGAAC...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTCAATCTGCCTCTTCATaGTCTCACACAGCAGCCGGA +
Preference number: 4 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLQSASS*SHTAAG
Trigger: TCCGGCTGCTGTGTGAGAGCATGAAGAGGCAGATTG...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTGCACATCCTTGTCTATaGGGTGCAGATTTAAGGCCA +
Preference number: 4 (lower is better)
Translates to: GLQASQNPEKPMESGAGLAHPCL*GADLRP
Trigger: TGGCCTTAAATCTGCACCGCATAGACAAGGATGTGC...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGCACAGAGCAATGATGTaGCTGCTATCTTCATGCACG +
Preference number: 4 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVHRAMM*LLSSCT
Trigger: CGTGCATGAAGATAGCAGCCACATCATTGCTCTGTG...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCACATATGGGGAGCTACTaGAGGAACAGGAAAGGCAGG +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSHMGSY*RNRKGR
Trigger: CCTGCCTTTCCTGTTCCTCCAGTAGCTCCCCATATG...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCACCAGAACTTTCTCCATaGGTGCTGTGCGTACCCATA +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSPELSP*VLCVPI
Trigger: TATGGGTACGCACAGCACTCATGGAGAAAGTTCTGG...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGAACTTTCTCCATGAGTaGTGTGCGTACCCATATGTG +
Preference number: 4 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGNFLHE*CAYPYV
Trigger: CACATATGGGTACGCACAGCACTCATGGAGAAAGTT...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCACATCAATGGACCGAATaGTGCTGCGTTTCCGTAGCT +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSHQWTE*CCVSVA
Trigger: AGCTACGGAAACGCAGCAGCATTCGGTCCATTGATG...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTTCTCCTTCTTGCTCATaGCAAACTTGTAGTGGCCAA +
Preference number: 4 (lower is better)
Translates to: GLQASQNPEKPMESGAGLSPSCS*QTCSGQ
Trigger: TTGGCCACTACAAGTTTGGCATGAGCAAGAAGGAGA...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTCTCCTTCTTGCTCATaGCAAACTTGTAGTGGCCAA +
Preference number: 4 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWSPSCS*QTCSGQ
Trigger: TTGGCCACTACAAGTTTGGCATGAGCAAGAAGGAGA...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGGCTCCATCTCCTTCTTaGTCATGCCAAACTTGTAGT +
Preference number: 4 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWAPSPS*SCQTCS
Trigger: ACTACAAGTTTGGCATGAGCAAGAAGGAGATGGAGC...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR GCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCATCCTTGTCTATGCGGTaGAGATTTAAGGCCACGGTG +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSSLSMR*RFKATV
Trigger: CACCGTGGCCTTAAATCTGCACCGCATAGACAAGGA...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCATCTGAGTCCAAGATCTaGATGAGGGAGCGCATGTTG +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSSESKI*MRERML
Trigger: CAACATGCGCTCCCTCATCCAGATCTTGGACTCAGA...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR TCA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAAGTGATCAGCTGTCTTaGGCTTCGTGTATTCCAAGG +
Preference number: 4 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSSDQLS*ASCIPR
Trigger: CCTTGGAATACACGAAGCTCAAGACAGCTGATCACT...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp CGGGCGCAGGCGGCAAGCCGGTCTTCTGAGGCACTCCCACTAGAGTaGCGCTTCCGGATCCCCAGGGCAGGGCGCTTTGCCGGGGAGTCC +
Preference number: 5 (lower is better)
Translates to: RAQAASRSSEALPLE*RFRIPRAGRFAGES
Trigger: GGACTCCCCGGCAAAGCGCCCTGCCCTGGGGATCCGGAAGCGCCACTCTAGTGGGAGTGCCTCAGAAGACCGGCTTGCCGCCTGCGCCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 90 bp CAGAGACTCCACGTACTCACGGGCGCAGGCGGCAAGCCGGTCTTCTaGGGCACTCCCACTAGAGTGGCGCTTCCGGATCCCCAGGGCAGG +
Preference number: 5 (lower is better)
Translates to: QRLHVLTGAGGKPVF*GTPTRVALPDPQGR
Trigger: CCTGCCCTGGGGATCCGGAAGCGCCACTCTAGTGGGAGTGCCTCAGAAGACCGGCTTGCCGCCTGCGCCCGTGAGTACGTGGAGTCTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp AAGCGTCTCCTGGCCTGGATCGTGGGGTCCCGGGAAAGTGTGGGCTaGAGTGGCTGGACCCTCGGAGCCATCTTCTCCAGCACCGTCGTC +
Preference number: 5 (lower is better)
Translates to: KRLLAWIVGSRESVG*SGWTLGAIFSSTVV
Trigger: GACGACGGTGCTGGAGAAGATGGCTCCGAGGGTCCAGCCACTGCAGCCCACACTTTCCCGGGACCCCACGATCCAGGCCAGGAGACGCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp GCTTCAAGCTCACTGGCAGGTGCAAGCGTCTCCTGGCCTGGATCGTaGGGTCCCGGGAAAGTGTGGGCTGCAGTGGCTGGACCCTCGGAG +
Preference number: 5 (lower is better)
Translates to: ASSSLAGASVSWPGS*GPGKVWAAVAGPSE
Trigger: CTCCGAGGGTCCAGCCACTGCAGCCCACACTTTCCCGGGACCCCACGATCCAGGCCAGGAGACGCTTGCACCTGCCAGTGAGCTTGAAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp CTGGCCTGCTTCAAGCTCACTGGCAGGTGCAAGCGTCTCCTGGCCTaGATCGTGGGGTCCCGGGAAAGTGTGGGCTGCAGTGGCTGGACC +
Preference number: 5 (lower is better)
Translates to: LACFKLTGRCKRLLA*IVGSRESVGCSGWT
Trigger: GGTCCAGCCACTGCAGCCCACACTTTCCCGGGACCCCACGATCCAGGCCAGGAGACGCTTGCACCTGCCAGTGAGCTTGAAGCAGGCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp CGGGAGGAAGGCAGCCCTGAGTCTGGAGAGTCAAACTCCACAGACTaGTGCTCTGCAGCTGCTATGCCCGGGGTCCCAGCTCCTGGCTCC +
Preference number: 5 (lower is better)
Translates to: REEGSPESGESNSTD*CSAAAMPGVPAPGS
Trigger: GGAGCCAGGAGCTGGGACCCCGGGCATAGCAGCTGCAGAGCAGCAGTCTGTGGAGTTTGACTCTCCAGACTCAGGGCTGCCTTCCTCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp GCACACAGCTGCGAGCTCCTGGCCTGCTTCAAGCTCACTGGCAGGTaGAAGCGTCTCCTGGCCTGGATCGTGGGGTCCCGGGAAAGTGTG +
Preference number: 5 (lower is better)
Translates to: AHSCELLACFKLTGR*KRLLAWIVGSRESV
Trigger: CACACTTTCCCGGGACCCCACGATCCAGGCCAGGAGACGCTTGCACCTGCCAGTGAGCTTGAAGCAGGCCAGGAGCTCGCAGCTGTGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp GCTGGGGCCTTCCCACCGGTAGAGCCCTGTTTCCGAAGGGCTTCTTaGCTGCCTCCCGAGGGTTTCCTGCCCTCTGCCTGTTGCTGCAAC +
Preference number: 5 (lower is better)
Translates to: AGAFPPVEPCFRRAS*LPPEGFLPSACCCN
Trigger: GTTGCAGCAACAGGCAGAGGGCAGGAAACCCTCGGGAGGCAGCCAAGAAGCCCTTCGGAAACAGGGCTCTACCGGTGGGAAGGCCCCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp AGCTCCTGGCCTGCTTCAAGCTCACTGGCAGGTGCAAGCGTCTCCTaGCCTGGATCGTGGGGTCCCGGGAAAGTGTGGGCTGCAGTGGCT +
Preference number: 5 (lower is better)
Translates to: SSWPASSSLAGASVS*PGSWGPGKVWAAVA
Trigger: AGCCACTGCAGCCCACACTTTCCCGGGACCCCACGATCCAGGCCAGGAGACGCTTGCACCTGCCAGTGAGCTTGAAGCAGGCCAGGAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGCACAGCAGCTTTTCTTaGACCGCGTCCTCTGCGCTG +
Preference number: 5 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGHSSFS*TASSAL
Trigger: CAGCGCAGAGGACGCGGTCAAAGAAAAGCTGCTGTG...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GCCGACCCCTCCTACCCAGCTGTGATCTGCAGGCATCCTGACCCCAACTTGCCCCGTGCCACCGCTCTTTaGCTGGTGGCAGTGGATGCA +
Preference number: 5 (lower is better)
Translates to: ADPSYPAVICRHPDPNLPRATAL*LVAVDA
Trigger: TGCATCCACTGCCACCAGCAAAAGAGCGGTGGCACG...GGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGGGTGCAGTGACTGGGGGTaGCATATGGGGAGCTACTGG +
Preference number: 5 (lower is better)
Translates to: GGQWGKLAPHRLCSTRVGCSDWG*HMGSYW
Trigger: CCAGTAGCTCCCCATATGCAACCCCCAGTCACTGCA...CCCAACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp AGGCTAGCCAGCCGTAGAAGGCCCGGGACACAATCTGCCTCTTCATaGTCTCACACAGCAGCCGGAGGGGCAACCTGTCAGGAATGCAGC +
Preference number: 5 (lower is better)
Translates to: RLASRRRPGTQSASS*SHTAAGGATCQECS
Trigger: GCTGCATTCCTGACAGGTTGCCCCTCCGGCTGCTGTGTGAGAGCATGAAGAGGCAGATTGTGTCCCGGGCCTTCTACGGCTGGCTAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTAAGGGCCAGACGTCCTaGCGAATCTCGTGTTCCACG +
Preference number: 5 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVKGQTS*RISCST
Trigger: CGTGGAACACGAGATTCGCAAGGACGTCTGGCCCTT...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp AGCTGCTATGCCCGGGGTCCCAGCTCCTGGCTCCTGTTCCCGCTTTaGTTTGGAATCTTCCAGGTCCTGAGGTCCAGAGGGCTCAAGATC +
Preference number: 5 (lower is better)
Translates to: SCYARGPSSWLLFPL*FGIFQVLRSRGLKI
Trigger: GATCTTGAGCCCTCTGGACCTCAGGACCTGGAAGATTCCAAACCAAAGCGGGAACAGGAGCCAGGAGCTGGGACCCCGGGCATAGCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACACACAGCAGCTTTTCTTaGACCGCGTCCTCTGCGCTG +
Preference number: 5 (lower is better)
Translates to: HFLGWFWRASAVTALHTTHSSFS*TASSAL
Trigger: CAGCGCAGAGGACGCGGTCAAAGAAAAGCTGCTGTG...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCCCAGGGCAGGGCGCTTaGCCGGGGAGTCCTGACGGT +
Preference number: 5 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVPGQGA*PGSPDG
Trigger: ACCGTCAGGACTCCCCGGCAAAGCGCCCTGCCCTGG...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGATGAGCATCTGCACCTaGTGGACCAAGTCCCGGGCA +
Preference number: 5 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGMSICT*WTKSRA
Trigger: TGCCCGGGACTTGGTCCACAAGGTGCAGATGCTCAT...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp CCCGTCCGACACCCAGCTCCTCTACATCAATGGACCGAATGCTGCTaGGTTTCCGTAGCTTGGGGAAAACCTTGCCCTTTCCCTGCTGGG +
Preference number: 5 (lower is better)
Translates to: PVRHPAPLHQWTECC*VSVAWGKPCPFPAG
Trigger: CCCAGCAGGGAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTGATGTAGAGGAGCTGGGTGTCGGACGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp GAACAGGAAAGGCAGGAGGAGCCCTGGCTACACAGGGGCTCTAGGTaGCAGGCTGTTAGGCTGGGTCCGAAACCCTGCATCTCAATCATG +
Preference number: 5 (lower is better)
Translates to: EQERQEEPWLHRGSR*QAVRLGPKPCISIM
Trigger: CATGATTGAGATGCAGGGTTTCGGACCCAGCCTAACAGCCTGGCACCTAGAGCCCCTGTGTAGCCAGGGCTCCTCCTGCCTTTCCTGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp GTGCCTCATCTAGGCTGGACTGGATGCCTGAGGCCACAGAGTAGTTaGGGGAGGAAGGCAGCCCTGAGTCTGGAGAGTCAAACTCCACAG +
Preference number: 5 (lower is better)
Translates to: VPHLGWTGCLRPQSS*GRKAALSLESQTPQ
Trigger: CTGTGGAGTTTGACTCTCCAGACTCAGGGCTGCCTTCCTCCCGCAACTACTCTGTGGCCTCAGGCATCCAGTCCAGCCTAGATGAGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp CGTCTTCAAAGCCCACACTCTGTGCCTCATCTAGGCTGGACTGGATaGCTGAGGCCACAGAGTAGTTGCGGGAGGAAGGCAGCCCTGAGT +
Preference number: 5 (lower is better)
Translates to: RLQSPHSVPHLGWTG*LRPQSSCGRKAALS
Trigger: ACTCAGGGCTGCCTTCCTCCCGCAACTACTCTGTGGCCTCAGGCATCCAGTCCAGCCTAGATGAGGCACAGAGTGTGGGCTTTGAAGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp TGCTGTGCGTACCCATATGTGTTTCAAGGCCTGTGGGCTGAGAGCTaGGGCCTTCCCACCGGTAGAGCCCTGTTTCCGAAGGGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: CCAYPYVFQGLWAES*GLPTGRALFPKGFL
Trigger: CAAGAAGCCCTTCGGAAACAGGGCTCTACCGGTGGGAAGGCCCCAGCTCTCAGCCCACAGGCCTTGAAACACATATGGGTACGCACAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp CTATGCCCGGGGTCCCAGCTCCTGGCTCCTGTTCCCGCTTTGGTTTaGAATCTTCCAGGTCCTGAGGTCCAGAGGGCTCAAGATCATCCA +
Preference number: 5 (lower is better)
Translates to: LCPGSQLLAPVPALV*NLPGPEVQRAQDHP
Trigger: TGGATGATCTTGAGCCCTCTGGACCTCAGGACCTGGAAGATTCCAAACCAAAGCGGGAACAGGAGCCAGGAGCTGGGACCCCGGGCATAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp CAGCACCGTCGTCTTCAAAGCCCACACTCTGTGCCTCATCTAGGCTaGACTGGATGCCTGAGGCCACAGAGTAGTTGCGGGAGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: QHRRLQSPHSVPHLG*TGCLRPQSSCGRKA
Trigger: TGCCTTCCTCCCGCAACTACTCTGTGGCCTCAGGCATCCAGTCCAGCCTAGATGAGGCACAGAGTGTGGGCTTTGAAGACGACGGTGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACAGGAGACATGCCAGGATaGGGCCAAACACAGGATCTG +
Preference number: 5 (lower is better)
Translates to: HFLGWFWRASAVTALHTTGDMPG*GQTQDL
Trigger: CAGATCCTGTGTTTGGCCCAATCCTGGCATGTCTCC...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp AAGGGTGGGCAATGGGGTAAGCTGGCCCCACACAGGCTGTGCAGTACCCGGGTTGCTCCTGTTCCCGCTTaGGTTTGGAATCTTCCAGGT +
Preference number: 5 (lower is better)
Translates to: KGGQWGKLAPHRLCSTRVAPVPA*VWNLPG
Trigger: ACCTGGAAGATTCCAAACCAAAGCGGGAACAGGAGC...AACCCGGGTACTGCACAGCCTGTGTGGGGCCAGCTTACCCCATTGCCCACCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 90 bp CAATCATGTCGCCAGCATTATGCTCGTGCCTATGTCCGGGGTAGATaGTCCGGAACACGTAGTCCGTTGCCCGTCCGACACCCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: QSCRQHYARAYVRGR*SGTRSPLPVRHPAP
Trigger: AGGAGCTGGGTGTCGGACGGGCAACGGACTACGTGTTCCGGATCATCTACCCCGGACATAGGCACGAGCATAATGCTGGCGACATGATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057631.12
CDS GCA 90 bp CCGTTGCCCGTCCGACACCCAGCTCCTCTACATCAATGGACCGAATaGTGCTGCGTTTCCGTAGCTTGGGGAAAACCTTGCCCTTTCCCT +
Preference number: 5 (lower is better)
Translates to: PLPVRHPAPLHQWTE*CCVSVAWGKPCPFP
Trigger: AGGGAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTGATGTAGAGGAGCTGGGTGTCGGACGGGCAACGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp CACAGGGGCTCTAGGTGCCAGGCTGTTAGGCTGGGTCCGAAACCCTaGATCTCAATCATGTCGCCAGCATTATGCTCGTGCCTATGTCCG +
Preference number: 5 (lower is better)
Translates to: HRGSRCQAVRLGPKP*ISIMSPALCSCLCP
Trigger: CGGACATAGGCACGAGCATAATGCTGGCGACATGATTGAGATGCAGGGTTTCGGACCCAGCCTAACAGCCTGGCACCTAGAGCCCCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057631.12
CDS CCA 90 bp AGGAGCCCTGGCTACACAGGGGCTCTAGGTGCCAGGCTGTTAGGCTaGGTCCGAAACCCTGCATCTCAATCATGTCGCCAGCATTATGCT +
Preference number: 5 (lower is better)
Translates to: RSPGYTGALGARLLG*VRNPASQSCRQHYA
Trigger: AGCATAATGCTGGCGACATGATTGAGATGCAGGGTTTCGGACCCAGCCTAACAGCCTGGCACCTAGAGCCCCTGTGTAGCCAGGGCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057631.12
CDS CCA 90 bp AGGAGCCCTGGCTACACAGGGGCTCTAGGTGCCAGGCTGTTAGGCTaGGTCCGAAACCCTGCATCTCAATCATGTCGCCAGCATCTTTCA +
Preference number: 5 (lower is better)
Translates to: RSPGYTGALGARLLG*VRNPASQSCRQHLS
Trigger: TGAAAGATGCTGGCGACATGATTGAGATGCAGGGTTTCGGACCCAGCCTAACAGCCTGGCACCTAGAGCCCCTGTGTAGCCAGGGCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACAAGAGCAGGCGTGTTCTaGAGTTCTGGTGCAGAGACT +
Preference number: 5 (lower is better)
Translates to: HFLGWFWRASAVTALHTTRAGVF*SSGAET
Trigger: AGTCTCTGCACCAGAACTCAAGAACACGCCTGCTCT...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGCCGTTCATGAGTTGGTaGGGAGTCCACTTCAGGGTT +
Preference number: 5 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGPFMSW*GVHFRV
Trigger: AACCCTGAAGTGGACTCCCAACCAACTCATGAACGG...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CACTTTCTGGGGTGGTTCTGGAGGGCAAGCGCAGTCACTGCCCTCCACACCACACCGTTCATGAGTTGGTaGGGAGTCCACTTCAGGGTT +
Preference number: 5 (lower is better)
Translates to: HFLGWFWRASAVTALHTTPFMSW*GVHFRV
Trigger: AACCCTGAAGTGGACTCCCAACCAACTCATGAACGG...TGTGGTGTGGAGGGCAGTGACTGCGCTTGCCCTCCAGAACCACCCCAGAAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 90 bp TGTGGCAGATATCTTCAGCCACGGGGCATGTCTTCCCCACTTTGGTaGACAGGGCCGCCATCTTGTCACTTCGCAGAAAGCCAGCAGCAC +
Preference number: 5 (lower is better)
Translates to: CGRYLQPRGMSSPLW*TGPPSCHFAESQQH
Trigger: GTGCTGCTGGCTTTCTGCGAAGTGACAAGATGGCGGCCCTGTTCACCAAAGTGGGGAAGACATGCCCCGTGGCTGAAGATATCTGCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp TTGCCCGTCCGACACCCAGCTCCTCTACATCAATGGACCGAATGCTaGTGCGTTTCCGTAGCTTGGGGAAAACCTTGCCCTTTCCCTGCT +
Preference number: 5 (lower is better)
Translates to: LPVRHPAPLHQWTEC*CVSVAWGKPCPFPA
Trigger: AGCAGGGAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTGATGTAGAGGAGCTGGGTGTCGGACGGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp TTGTGGACCAAGTCCCGGGCAATCCGCAGGATCTCCTGGGCATCATaGCGCTCAGCCCGCTCGTTGAAGAATTTGATGATGTCGGTGAAG +
Preference number: 5 (lower is better)
Translates to: LWTKSRAIRRISWAS*RSARSLKNLMMSVK
Trigger: CTTCACCGACATCATCAAATTCTTCAACGAGCGGGCTGAGCGGCATGATGCCCAGGAGATCCTGCGGATTGCCCGGGACTTGGTCCACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp CACAGGGGCTCTAGGTGCCAGGCTGTTAGGCTGGGTCCGAAACCCTaGATCTCAATCATGTCGCCAGCATCTTTCATCGGATTGGGAGCT +
Preference number: 5 (lower is better)
Translates to: HRGSRCQAVRLGPKP*ISIMSPASFIGLGA
Trigger: AGCTCCCAATCCGATGAAAGATGCTGGCGACATGATTGAGATGCAGGGTTTCGGACCCAGCCTAACAGCCTGGCACCTAGAGCCCCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081799.6
CDS CCA 90 bp ACACGTAGTCCGTTGCCCGTCCGACACCCAGCTCCTCTACATCAATaGACCGAATGCTGCTGCGTTTCCGTAGCTTGGGGAAAACCTTGC +
Preference number: 5 (lower is better)
Translates to: TRSPLPVRHPAPLHQ*TECCCVSVAWGKPC
Trigger: GCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTGATGTAGAGGAGCTGGGTGTCGGACGGGCAACGGACTACGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp ATCTGCACCTTGTGGACCAAGTCCCGGGCAATCCGCAGGATCTCCTaGGCATCATGCCGCTCAGCCCGCTCGTTGAAGAATTTGATGATG +
Preference number: 5 (lower is better)
Translates to: ICTLWTKSRAIRRIS*ASCRSARSLKNLMM
Trigger: CATCATCAAATTCTTCAACGAGCGGGCTGAGCGGCATGATGCCCAGGAGATCCTGCGGATTGCCCGGGACTTGGTCCACAAGGTGCAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GCCGACCCCTCCTACCCAGCTGTGATCTGCAGGCATCCTGACCCCAACTTGCCCTCGGTGAAGTCCATGTaGTTGTCACGGATAATCTCT +
Preference number: 5 (lower is better)
Translates to: ADPSYPAVICRHPDPNLPSVKSM*LSRIIS
Trigger: AGAGATTATCCGTGACAACAACATGGACTTCACCGA...GGGCAAGTTGGGGTCAGGATGCCTGCAGATCACAGCTGGGTAGGAGGGGTCGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAATGAGCATCTGCACCTaGTGGACCAAGTCCCGGGCA +
Preference number: 5 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGMSICT*WTKSRA
Trigger: TGCCCGGGACTTGGTCCACAAGGTGCAGATGCTCAT...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp TGTGGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGCATCTTTCATCGGATaGGGAGCTGTGAGGTTCCGC +
Preference number: 5 (lower is better)
Translates to: CGLQGPDLAYMCSDGGDMASFIG*GAVRFR
Trigger: GCGGAACCTCACAGCTCCCAATCCGATGAAAGATGC...CATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGAGCCTCCTCCATGATTaGTTTCACCTCCTTCTTCAC +
Preference number: 5 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGSLLHD*FHLLLH
Trigger: GTGAAGAAGGAGGTGAAACAAATCATGGAGGAGGCT...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAGGAGACATGCCAGGATaGGGCCAAACACAGGATCTG +
Preference number: 5 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGGDMPG*GQTQDL
Trigger: CAGATCCTGTGTTTGGCCCAATCCTGGCATGTCTCC...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp AGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGTTCTGGAGGGCGTGCCACCGCTCTTTaGCTGGTGGCAGTGGATGCA +
Preference number: 5 (lower is better)
Translates to: RKVVIGLSSYTFWGGSGGRATAL*LVAVDA
Trigger: TGCATCCACTGCCACCAGCAAAAGAGCGGTGGCACG...CCCTCCAGAACCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAACACCTGCTGGTACCTaGCTGCCACTGCTGTATCCA +
Preference number: 5 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGTPAGT*LPLLYP
Trigger: TGGATACAGCAGTGGCAGCAAGGTACCAGCAGGTGT...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 90 bp CCAGCTCATCAGCAGAGGGGTCAGTCCAGTAGTGATCAGCTGTCTTaGGCTTCGTGTATTCCAAGGCACAGGGTCCCACTAGGAGACATG +
Preference number: 5 (lower is better)
Translates to: PAHQQRGQSSSDQLS*ASCIPRHRVPLGDM
Trigger: CATGTCTCCTAGTGGGACCCTGTGCCTTGGAATACACGAAGCTCAAGACAGCTGATCACTACTGGACTGACCCCTCTGCTGATGAGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 90 bp ACACTCTTCTCTAGCTCAGAGTCCCCGAGAGTCCCGTTCATGAGTTaGTTGGGAGTCCACTTCAGGGTTAGGTTCTCTGCAGACTGGTGC +
Preference number: 5 (lower is better)
Translates to: TLFSSSESPRVPFMS*LGVHFRVRFSADWC
Trigger: GCACCAGTCTGCAGAGAACCTAACCCTGAAGTGGACTCCCAACCAACTCATGAACGGGACTCTCGGGGACTCTGAGCTAGAGAAGAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCCATGTCTTCCCCACTTaGGTGAACAGGGCCGCCATC +
Preference number: 5 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVHVFPT*VNRAAI
Trigger: GATGGCGGCCCTGTTCACCAAAGTGGGGAAGACATG...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CACAAAACCAGAGTCACTAAGGCAGGCACACATTGGCCACCCGTGCTTGGTGGAAGTCCCGTTCATGAGTaGGTTGGGAGTCCACTTCAG +
Preference number: 5 (lower is better)
Translates to: HKTRVTKAGTHWPPVLGGSPVHE*VGSPLQ
Trigger: CTGAAGTGGACTCCCAACCAACTCATGAACGGGACT...TCCACCAAGCACGGGTGGCCAATGTGTGCCTGCCTTAGTGACTCTGGTTTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGCTGCGTTTCCGTAGCTaGGGGAAAACCTTGCCCTTT +
Preference number: 5 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWLRFRS*GKTLPF
Trigger: AAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAG...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGTGCAGTGACTGGGGGTaGCATATGGGGAGCTACTGG +
Preference number: 5 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVCSDWG*HMGSYW
Trigger: CCAGTAGCTCCCCATATGCAACCCCCAGTCACTGCA...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCAAGGGCCAGACGTCCTaGCGAATCTCGTGTTCCACG +
Preference number: 5 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVKGQTS*RISCST
Trigger: CGTGGAACACGAGATTCGCAAGGACGTCTGGCCCTT...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGCTGAGCCTCTCGAGGTaGGAGGTCGTGAAGTACCAG +
Preference number: 5 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVLSLSR*EVVKYQ
Trigger: CTGGTACTTCACGACCTCCAACCTCGAGAGGCTCAG...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGCTGAGCCTCTCGAGGTaGGAGGTCGTGAAGTACCAG +
Preference number: 5 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWLSLSR*EVVKYQ
Trigger: CTGGTACTTCACGACCTCCAACCTCGAGAGGCTCAG...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGGCTTCAGGGCCCAGACTTGGCTTACATGTGCTCAGATGGTGGGGACATGGGGGTGAAGTCCATGTTGTaGTCACGGATAATCTCTCTG +
Preference number: 5 (lower is better)
Translates to: GLQGPDLAYMCSDGGDMGVKSML*SRIISL
Trigger: CAGAGAGATTATCCGTGACAACAACATGGACTTCAC...CCCCATGTCCCCACCATCTGAGCACATGTAAGCCAAGTCTGGGCCCTGAAGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 90 bp TTCGGCCAGGTACTGTACAACCCTGTCCAGAACTTTCTCCATGAGTaGTGTGCGTACCCATATGTGTTTCAAGGCCTGTGGGCTGAGAGC +
Preference number: 5 (lower is better)
Translates to: FGQVLYNPVQNFLHE*CAYPYVFQGLWAES
Trigger: GCTCTCAGCCCACAGGCCTTGAAACACATATGGGTACGCACAGCACTCATGGAGAAAGTTCTGGACAGGGTTGTACAGTACCTGGCCGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTATGAGGGAGCGCATGTaGGCAAAGTGGCTGTCCATG +
Preference number: 5 (lower is better)
Translates to: GLQASQNPEKPMESGAGLMRERM*AKWLSM
Trigger: CATGGACAGCCACTTTGCCAACATGCGCTCCCTCAT...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCATGAGGGAGCGCATGTaGGCAAAGTGGCTGTCCATG +
Preference number: 5 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVMRERM*AKWLSM
Trigger: CATGGACAGCCACTTTGCCAACATGCGCTCCCTCAT...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp TGTGCAGAATGCGGCTGGTCCTTTCTCGTGTTTTTCAGCTGCAGCAAGTCTGTGAGTCCCGTTCATGAGTaGGTTGGGAGTCCACTTCAG +
Preference number: 5 (lower is better)
Translates to: CAECGWSFLVFFSCSKSVSPVHE*VGSPLQ
Trigger: CTGAAGTGGACTCCCAACCAACTCATGAACGGGACT...CACAGACTTGCTGCAGCTGAAAAACACGAGAAAGGACCAGCCGCATTCTGCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGGCTCCTGTTCCCGCTTaGGTTTGGAATCTTCCAGGT +
Preference number: 5 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWAPVPA*VWNLPG
Trigger: ACCTGGAAGATTCCAAACCAAAGCGGGAACAGGAGC...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGGTTGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTCCGCGAGCAGATCATaGAGAGCATCGCGTGTAGTT +
Preference number: 5 (lower is better)
Translates to: GLDLYRQPCKLFQRPFWVSASRS*RASRVV
Trigger: AACTACACGCGATGCTCTCAATGATCTGCTCGCGGA...GACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCAACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081799.6
CDS TCA 90 bp AGTAAACACTCTTCTCTAGCTCAGAGTCCCCGAGAGTCCCGTTCATaGGTTGGTTGGGAGTCCACTTCAGGGTTAGGTTCTCTGCAGACT +
Preference number: 5 (lower is better)
Translates to: SKHSSLAQSPRESRS*VGWESTSGLGSLQT
Trigger: AGTCTGCAGAGAACCTAACCCTGAAGTGGACTCCCAACCAACTCATGAACGGGACTCTCGGGGACTCTGAGCTAGAGAAGAGTGTTTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 90 bp GCTCCTGGCTCCTGTTCCCGCTTTGGTTTGGAATCTTCCAGGTCCTaGGGTCCAGAGGGCTCAAGATCATCCACAGAGATAAATACATCA +
Preference number: 5 (lower is better)
Translates to: APGSCSRFGLESSRS*GPEGSRSSTEINTS
Trigger: TGATGTATTTATCTCTGTGGATGATCTTGAGCCCTCTGGACCTCAGGACCTGGAAGATTCCAAACCAAAGCGGGAACAGGAGCCAGGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GTGACACTGTACACACGAGTGGGTGGGTCACTGTGTACTGTGGGGAGATCATGGGTGAAGTCCATGTTGTaGTCACGGATAATCTCTCTG +
Preference number: 5 (lower is better)
Translates to: VTLYTRVGGSLCTVGRSWVKSML*SRIISL
Trigger: CAGAGAGATTATCCGTGACAACAACATGGACTTCAC...CCATGATCTCCCCACAGTACACAGTGACCCACCCACTCGTGTGTACAGTGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 90 bp GCATCTCAATCATGTCGCCAGCATCTTTCATCGGATTGGGAGCTGTaGGGTTCCGCGAGCAGATCATTGAGAGCATCGCGTGTAGTTTAT +
Preference number: 5 (lower is better)
Translates to: ASQSCRQHLSSDWEL*GSASRSLRASRVVY
Trigger: ATAAACTACACGCGATGCTCTCAATGATCTGCTCGCGGAACCTCACAGCTCCCAATCCGATGAAAGATGCTGGCGACATGATTGAGATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CTGTCCTTGGAGGAAGGTTGTGATAGGACTGTCTTCCTACACTTTCTGGGGTGGAGCCTCCTCCATGATTaGTTTCACCTCCTTCTTCAC +
Preference number: 5 (lower is better)
Translates to: LSLEEGCDRTVFLHFLGWSLLHD*FHLLLH
Trigger: GTGAAGAAGGAGGTGAAACAAATCATGGAGGAGGCT...CCACCCCAGAAAGTGTAGGAAGACAGTCCTATCACAACCTTCCTCCAAGGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAAGAGCAGGCGTGTTCTaGAGTTCTGGTGCAGAGACT +
Preference number: 5 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSRAGVF*SSGAET
Trigger: AGTCTCTGCACCAGAACTCAAGAACACGCCTGCTCT...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp TGGACCTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCACTGCGTTTCCGTAGCTaGGGGAAAACCTTGCCCTTT +
Preference number: 5 (lower is better)
Translates to: WTFIDNPVNSSRDPSGSSLRFRS*GKTLPF
Trigger: AAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAG...TGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAGGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTGAGATAAATACATCATaGCTGATGGTGGAATCCCGG +
Preference number: 5 (lower is better)
Translates to: GLQASQNPEKPMESGAGLEINTS*LMVESR
Trigger: CCGGGATTCCACCATCAGCAATGATGTATTTATCTC...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp GGTCTTCAGGCTTCTCAGAACCCTGAAAAGCCTATGGAAAGTGGAGCTGGCCTTTCGGTGAAGTCCATGTaGTTGTCACGGATAATCTCT +
Preference number: 5 (lower is better)
Translates to: GLQASQNPEKPMESGAGLSVKSM*LSRIIS
Trigger: AGAGATTATCCGTGACAACAACATGGACTTCACCGA...AAGGCCAGCTCCACTTTCCATAGGCTTTTCAGGGTTCTGAGAAGCCTGAAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS-3UTR CAA 90 bp CTTTATCGACAACCCTGTAAACTCTTCCAGAGACCCTTCTGGGTCTTCAGGCTTGAGATAAATACATCATaGCTGATGGTGGAATCCCGG +
Preference number: 5 (lower is better)
Translates to: LYRQPCKLFQRPFWVFRLEINTS*LMVESR
Trigger: CCGGGATTCCACCATCAGCAATGATGTATTTATCTC...AAGCCTGAAGACCCAGAAGGGTCTCTGGAAGAGTTTACAGGGTTGTCGATAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp TGCGAGCTCCTGGCCTGCTTCAAGCTCACTGGCAGGTaGAAGCGTCTCCTGGCCTGGATCGTGGGGTCCCGG +
Preference number: 6 (lower is better)
Translates to: CELLACFKLTGR*KRLLAWIVGSR
Trigger: CCGGGACCCCACGATCCAGGCCAGGAGACGCTTGCACCTGCCAGTGAGCTTGAAGCAGGCCAGGAGCTCGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp GTCTCCTGGCCTGGATCGTGGGGTCCCGGGAAAGTGTaGGCTGCAGTGGCTGGACCCTCGGAGCCATCTTCT +
Preference number: 6 (lower is better)
Translates to: VSWPGSWGPGKV*AAVAGPSEPSS
Trigger: AGAAGATGGCTCCGAGGGTCCAGCCACTGCAGCCCACACTTTCCCGGGACCCCACGATCCAGGCCAGGAGAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp AGGCAGGAGGAGCCCTGGCTACACAGGGGCTCTAGGTaGCAGGCTGTTAGGCTGGGTCCGAAACCCTGCATC +
Preference number: 6 (lower is better)
Translates to: RQEEPWLHRGSR*QAVRLGPKPCI
Trigger: GATGCAGGGTTTCGGACCCAGCCTAACAGCCTGGCACCTAGAGCCCCTGTGTAGCCAGGGCTCCTCCTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp ATAGGCTGCGGCGCACACAGCTGCGAGCTCCTGGCCTaGTTCAAGCTCACTGGCAGGTGCAAGCGTCTCCTG +
Preference number: 6 (lower is better)
Translates to: IGCGAHSCELLA*FKLTGRCKRLL
Trigger: CAGGAGACGCTTGCACCTGCCAGTGAGCTTGAAGCAGGCCAGGAGCTCGCAGCTGTGTGCGCCGCAGCCTAT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp GCCCGGGGTCCCAGCTCCTGGCTCCTGTTCCCGCTTTaGTTTGGAATCTTCCAGGTCCTGAGGTCCAGAGGG +
Preference number: 6 (lower is better)
Translates to: ARGPSSWLLFPL*FGIFQVLRSRG
Trigger: CCCTCTGGACCTCAGGACCTGGAAGATTCCAAACCAAAGCGGGAACAGGAGCCAGGAGCTGGGACCCCGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp CCTGCTTCAAGCTCACTGGCAGGTGCAAGCGTCTCCTaGCCTGGATCGTGGGGTCCCGGGAAAGTGTGGGCT +
Preference number: 6 (lower is better)
Translates to: PASSSLAGASVS*PGSWGPGKVWA
Trigger: AGCCCACACTTTCCCGGGACCCCACGATCCAGGCCAGGAGACGCTTGCACCTGCCAGTGAGCTTGAAGCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp ACACAGCTGCGAGCTCCTGGCCTGCTTCAAGCTCACTaGCAGGTGCAAGCGTCTCCTGGCCTGGATCGTGGG +
Preference number: 6 (lower is better)
Translates to: TQLRAPGLLQAH*QVQASPGLDRG
Trigger: CCCACGATCCAGGCCAGGAGACGCTTGCACCTGCCAGTGAGCTTGAAGCAGGCCAGGAGCTCGCAGCTGTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 72 bp CTTCCCACCGGTAGAGCCCTGTTTCCGAAGGGCTTCTaGGCTGCCTCCCGAGGGTTTCCTGCCCTCTGCCTG +
Preference number: 6 (lower is better)
Translates to: LPTGRALFPKGF*AASRGFPALCL
Trigger: CAGGCAGAGGGCAGGAAACCCTCGGGAGGCAGCCAAGAAGCCCTTCGGAAACAGGGCTCTACCGGTGGGAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 90 bp AGCTGGGGCCTTCCCACCGGTAGAGCCCTGTTTCCGAAGGGCTTCTaGGCTGCCTCCCGAGGGTTTCCTGCCCTCTGCCTGTTGCTGCAA +
Preference number: 6 (lower is better)
Translates to: SWGLPTGRALFPKGF*AASRGFPALCLLLQ
Trigger: TTGCAGCAACAGGCAGAGGGCAGGAAACCCTCGGGAGGCAGCCAAGAAGCCCTTCGGAAACAGGGCTCTACCGGTGGGAAGGCCCCAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 72 bp GGCCACCTGAGGCCCCCGGGGGCCTGTCTGGTGGAATaGTGTTGTGATGCACCAATGCAGACAGGTGTGTCC +
Preference number: 6 (lower is better)
Translates to: GHLRPPGACLVE*CCDAPMQTGVS
Trigger: GGACACACCTGTCTGCATTGGTGCATCACAACATCATTCCACCAGACAGGCCCCCGGGGGCCTCAGGTGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp GGCAGCCCTGAGTCTGGAGAGTCAAACTCCACAGACTaGTGCTCTGCAGCTGCTATGCCCGGGGTCCCAGCT +
Preference number: 6 (lower is better)
Translates to: GSPESGESNSTD*CSAAAMPGVPA
Trigger: AGCTGGGACCCCGGGCATAGCAGCTGCAGAGCAGCAGTCTGTGGAGTTTGACTCTCCAGACTCAGGGCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp TTCCCACCGGTAGAGCCCTGTTTCCGAAGGGCTTCTTaGCTGCCTCCCGAGGGTTTCCTGCCCTCTGCCTGT +
Preference number: 6 (lower is better)
Translates to: FPPVEPCFRRAS*LPPEGFLPSAC
Trigger: ACAGGCAGAGGGCAGGAAACCCTCGGGAGGCAGCCAAGAAGCCCTTCGGAAACAGGGCTCTACCGGTGGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp CTGATGGTGGAATCCCGGTGCACGAGGCGCTGCACGTaGCTATCGATGCTGCTGCCCGAGGAGAACTTGGTG +
Preference number: 6 (lower is better)
Translates to: LMVESRCTRRCT*LSMLLPEENLV
Trigger: CACCAAGTTCTCCTCGGGCAGCAGCATCGATAGCCACGTGCAGCGCCTCGTGCACCGGGATTCCACCATCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 72 bp TGCCCGGGGTCCCAGCTCCTGGCTCCTGTTCCCGCTTaGGTTTGGAATCTTCCAGGTCCTGAGGTCCAGAGG +
Preference number: 6 (lower is better)
Translates to: CPGSQLLAPVPA*VWNLPGPEVQR
Trigger: CCTCTGGACCTCAGGACCTGGAAGATTCCAAACCAAAGCGGGAACAGGAGCCAGGAGCTGGGACCCCGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp TCCGAAGGGCTTCTTGGCTGCCTCCCGAGGGTTTCCTaGCCTCTGCCTGTTGCTGCAACTCCTGCACCTTGT +
Preference number: 6 (lower is better)
Translates to: SEGLLGCLPRVS*PLPVAATPAPC
Trigger: ACAAGGTGCAGGAGTTGCAGCAACAGGCAGAGGGCAGGAAACCCTCGGGAGGCAGCCAAGAAGCCCTTCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp GCCTCTGGATGCCATCCTGGCTCACCAGCACAAGCGTaGCACCGCTCTTTTGCTGGTGGCAGTGGATGCAGA +
Preference number: 6 (lower is better)
Translates to: ASGCHPGSPAQA*HRSFAGGSGCR
Trigger: TCTGCATCCACTGCCACCAGCAAAAGAGCGGTGGCACGCTTGTGCTGGTGAGCCAGGATGGCATCCAGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp AGCCGTAGAAGGCCCGGGACACAATCTGCCTCTTCATaGTCTCACACAGCAGCCGGAGGGGCAACCTGTCAG +
Preference number: 6 (lower is better)
Translates to: SRRRPGTQSASS*SHTAAGGATCQ
Trigger: CTGACAGGTTGCCCCTCCGGCTGCTGTGTGAGAGCATGAAGAGGCAGATTGTGTCCCGGGCCTTCTACGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp TGGAGAGTCAAACTCCACAGACTGCTGCTCTGCAGCTaGTATGCCCGGGGTCCCAGCTCCTGGCTCCTGTTC +
Preference number: 6 (lower is better)
Translates to: WRVKLHRLLLCS*YARGPSSWLLF
Trigger: GAACAGGAGCCAGGAGCTGGGACCCCGGGCATAGCAGCTGCAGAGCAGCAGTCTGTGGAGTTTGACTCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp CTGCTCTGCAGCTGCTATGCCCGGGGTCCCAGCTCCTaGCTCCTGTTCCCGCTTTGGTTTGGAATCTTCCAG +
Preference number: 6 (lower is better)
Translates to: LLCSCYARGPSS*LLFPLWFGIFQ
Trigger: CTGGAAGATTCCAAACCAAAGCGGGAACAGGAGCCAGGAGCTGGGACCCCGGGCATAGCAGCTGCAGAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 90 bp CAGCTGCTATGCCCGGGGTCCCAGCTCCTGGCTCCTGTTCCCGCTTaGGTTTGGAATCTTCCAGGTCCTGAGGTCCAGAGGGCTCAAGAT +
Preference number: 6 (lower is better)
Translates to: QLLCPGSQLLAPVPA*VWNLPGPEVQRAQD
Trigger: ATCTTGAGCCCTCTGGACCTCAGGACCTGGAAGATTCCAAACCAAAGCGGGAACAGGAGCCAGGAGCTGGGACCCCGGGCATAGCAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 72 bp CGCCAGCATTATGCTCGTGCCTATGTCCGGGGTAGATaGTCCGGAACACGTAGTCCGTTGCCCGTCCGACAC +
Preference number: 6 (lower is better)
Translates to: RQHYARAYVRGR*SGTRSPLPVRH
Trigger: GTGTCGGACGGGCAACGGACTACGTGTTCCGGATCATCTACCCCGGACATAGGCACGAGCATAATGCTGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057631.12
CDS TCA 72 bp CTGATACTTGCTCCACACATCCTTGGTGAGGCCACCTaGGGCCCCCGGGGGCCTGTCTGGTGGAATGATGTT +
Preference number: 6 (lower is better)
Translates to: LILAPHILGEAT*GPRGPVWWNDV
Trigger: AACATCATTCCACCAGACAGGCCCCCGGGGGCCTCAGGTGGCCTCACCAAGGATGTGTGGAGCAAGTATCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp AGCCCACACTCTGTGCCTCATCTAGGCTGGACTGGATaGCTGAGGCCACAGAGTAGTTGCGGGAGGAAGGCA +
Preference number: 6 (lower is better)
Translates to: SPHSVPHLGWTG*LRPQSSCGRKA
Trigger: TGCCTTCCTCCCGCAACTACTCTGTGGCCTCAGGCATCCAGTCCAGCCTAGATGAGGCACAGAGTGTGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp CCGTTGCCCGTCCGACACCCAGCTCCTCTACATCAATaGACCGAATGCTGCTGCGTTTCCGTAGCTTGGGGA +
Preference number: 6 (lower is better)
Translates to: PLPVRHPAPLHQ*TECCCVSVAWG
Trigger: TCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTGATGTAGAGGAGCTGGGTGTCGGACGGGCAACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp GGCTACACAGGGGCTCTAGGTGCCAGGCTGTTAGGCTaGGTCCGAAACCCTGCATCTCAATCATGTCGCCAG +
Preference number: 6 (lower is better)
Translates to: GYTGALGARLLG*VRNPASQSCRQ
Trigger: CTGGCGACATGATTGAGATGCAGGGTTTCGGACCCAGCCTAACAGCCTGGCACCTAGAGCCCCTGTGTAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp GGGTCCCAGCTCCTGGCTCCTGTTCCCGCTTTGGTTTaGAATCTTCCAGGTCCTGAGGTCCAGAGGGCTCAA +
Preference number: 6 (lower is better)
Translates to: GSQLLAPVPALV*NLPGPEVQRAQ
Trigger: TTGAGCCCTCTGGACCTCAGGACCTGGAAGATTCCAAACCAAAGCGGGAACAGGAGCCAGGAGCTGGGACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp TTGTGGACCAAGTCCCGGGCAATCCGCAGGATCTCCTaGGCATCATGCCGCTCAGCCCGCTCGTTGAAGAAT +
Preference number: 6 (lower is better)
Translates to: LWTKSRAIRRIS*ASCRSARSLKN
Trigger: ATTCTTCAACGAGCGGGCTGAGCGGCATGATGCCCAGGAGATCCTGCGGATTGCCCGGGACTTGGTCCACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 72 bp AGCTCTGAGTCCAAGATCTGGATGAGGGAGCGCATGTaGGCAAAGTGGCTGTCCATGGCACCCCCACTGGGG +
Preference number: 6 (lower is better)
Translates to: SSESKIWMRERM*AKWLSMAPPLG
Trigger: CCCCAGTGGGGGTGCCATGGACAGCCACTTTGCCAACATGCGCTCCCTCATCCAGATCTTGGACTCAGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp TGGCTGCCTCCCGAGGGTTTCCTGCCCTCTGCCTGTTaGTGCAACTCCTGCACCTTGTGGCAGATATCTTCA +
Preference number: 6 (lower is better)
Translates to: WLPPEGFLPSAC*CNSCTLWQISS
Trigger: TGAAGATATCTGCCACAAGGTGCAGGAGTTGCAGCAACAGGCAGAGGGCAGGAAACCCTCGGGAGGCAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp TACCCATATGTGTTTCAAGGCCTGTGGGCTGAGAGCTaGGGCCTTCCCACCGGTAGAGCCCTGTTTCCGAAG +
Preference number: 6 (lower is better)
Translates to: YPYVFQGLWAES*GLPTGRALFPK
Trigger: CTTCGGAAACAGGGCTCTACCGGTGGGAAGGCCCCAGCTCTCAGCCCACAGGCCTTGAAACACATATGGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp CGTCTTCAAAGCCCACACTCTGTGCCTCATCTAGGCTaGACTGGATGCCTGAGGCCACAGAGTAGTTGCGGG +
Preference number: 6 (lower is better)
Translates to: RLQSPHSVPHLG*TGCLRPQSSCG
Trigger: CCCGCAACTACTCTGTGGCCTCAGGCATCCAGTCCAGCCTAGATGAGGCACAGAGTGTGGGCTTTGAAGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp AAGTCCCGGGCAATCCGCAGGATCTCCTGGGCATCATaGCGCTCAGCCCGCTCGTTGAAGAATTTGATGATG +
Preference number: 6 (lower is better)
Translates to: KSRAIRRISWAS*RSARSLKNLMM
Trigger: CATCATCAAATTCTTCAACGAGCGGGCTGAGCGGCATGATGCCCAGGAGATCCTGCGGATTGCCCGGGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp TGTGATGCACCAATGCAGACAGGTGTGTCCTCACTGTaGACAGGTGGCGACAGTAGGCTAGCCAGCCGTAGA +
Preference number: 6 (lower is better)
Translates to: CDAPMQTGVSSL*TGGDSRLASRR
Trigger: TCTACGGCTGGCTAGCCTACTGTCGCCACCTGTCCACAGTGAGGACACACCTGTCTGCATTGGTGCATCACA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 72 bp CATGTCTTCCCCACTTTGGTGAACAGGGCCGCCATCTaGTCACTTCGCAGAAAGCCAGCAGCACGGCGTCTT +
Preference number: 6 (lower is better)
Translates to: HVFPTLVNRAAI*SLRRKPAARRL
Trigger: AAGACGCCGTGCTGCTGGCTTTCTGCGAAGTGACAAGATGGCGGCCCTGTTCACCAAAGTGGGGAAGACATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 90 bp ACCTTGTGGCAGATATCTTCAGCCACGGGGCATGTCTTCCCCACTTaGGTGAACAGGGCCGCCATCTTGTCACTTCGCAGAAAGCCAGCA +
Preference number: 6 (lower is better)
Translates to: TLWQISSATGHVFPT*VNRAAILSLRRKPA
Trigger: TGCTGGCTTTCTGCGAAGTGACAAGATGGCGGCCCTGTTCACCAAAGTGGGGAAGACATGCCCCGTGGCTGAAGATATCTGCCACAAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 90 bp CTCTTCTCTAGCTCAGAGTCCCCGAGAGTCCCGTTCATGAGTTGGTaGGGAGTCCACTTCAGGGTTAGGTTCTCTGCAGACTGGTGCAGG +
Preference number: 6 (lower is better)
Translates to: LFSSSESPRVPFMSW*GVHFRVRFSADWCR
Trigger: CCTGCACCAGTCTGCAGAGAACCTAACCCTGAAGTGGACTCCCAACCAACTCATGAACGGGACTCTCGGGGACTCTGAGCTAGAGAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 72 bp TATCTTCAGCCACGGGGCATGTCTTCCCCACTTTGGTaGACAGGGCCGCCATCTTGTCACTTCGCAGAAAGC +
Preference number: 6 (lower is better)
Translates to: YLQPRGMSSPLW*TGPPSCHFAES
Trigger: GCTTTCTGCGAAGTGACAAGATGGCGGCCCTGTTCACCAAAGTGGGGAAGACATGCCCCGTGGCTGAAGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp CGACACCCAGCTCCTCTACATCAATGGACCGAATGCTaGTGCGTTTCCGTAGCTTGGGGAAAACCTTGCCCT +
Preference number: 6 (lower is better)
Translates to: RHPAPLHQWTEC*CVSVAWGKPCP
Trigger: AGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTGATGTAGAGGAGCTGGGTGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp GTCCGACACCCAGCTCCTCTACATCAATGGACCGAATaGTGCTGCGTTTCCGTAGCTTGGGGAAAACCTTGC +
Preference number: 6 (lower is better)
Translates to: VRHPAPLHQWTE*CCVSVAWGKPC
Trigger: GCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTGATGTAGAGGAGCTGGGTGTCGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp TCTAGGTGCCAGGCTGTTAGGCTGGGTCCGAAACCCTaGATCTCAATCATGTCGCCAGCATTATGCTCGTGC +
Preference number: 6 (lower is better)
Translates to: SRCQAVRLGPKP*ISIMSPALCSC
Trigger: GCACGAGCATAATGCTGGCGACATGATTGAGATGCAGGGTTTCGGACCCAGCCTAACAGCCTGGCACCTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057631.12
CDS CCA 72 bp CATCAATGGACCGAATGCTGCTGCGTTTCCGTAGCTTaGGGAAAACCTTGCCCTTTCCCTGCTGGGTCCACA +
Preference number: 6 (lower is better)
Translates to: HQWTECCCVSVA*GKPCPFPAGST
Trigger: TGTGGACCCAGCAGGGAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 72 bp CAGATATCTTCAGCCACGGGGCATGTCTTCCCCACTTaGGTGAACAGGGCCGCCATCTTGTCACTTCGCAGA +
Preference number: 6 (lower is better)
Translates to: QISSATGHVFPT*VNRAAILSLRR
Trigger: TCTGCGAAGTGACAAGATGGCGGCCCTGTTCACCAAAGTGGGGAAGACATGCCCCGTGGCTGAAGATATCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 72 bp AGCTCAGAGTCCCCGAGAGTCCCGTTCATGAGTTGGTaGGGAGTCCACTTCAGGGTTAGGTTCTCTGCAGAC +
Preference number: 6 (lower is better)
Translates to: SSESPRVPFMSW*GVHFRVRFSAD
Trigger: GTCTGCAGAGAACCTAACCCTGAAGTGGACTCCCAACCAACTCATGAACGGGACTCTCGGGGACTCTGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 72 bp ACATCAATGGACCGAATGCTGCTGCGTTTCCGTAGCTaGGGGAAAACCTTGCCCTTTCCCTGCTGGGTCCAC +
Preference number: 6 (lower is better)
Translates to: TSMDRMLLRFRS*GKTLPFPCWVH
Trigger: GTGGACCCAGCAGGGAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 72 bp GCAGGAGGCAAGCCTCCACAGCACCACACAGAGCAATaGTGTGGCTGCTATCTTCATGCACGAATTTCCTGG +
Preference number: 6 (lower is better)
Translates to: AGGKPPQHHTEQ*CGCYLHARISW
Trigger: CCAGGAAATTCGTGCATGAAGATAGCAGCCACATCATTGCTCTGTGTGGTGCTGTGGAGGCTTGCCTCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 72 bp TCATGTCGCCAGCATCTTTCATCGGATTGGGAGCTGTaGGGTTCCGCGAGCAGATCATTGAGAGCATCGCGT +
Preference number: 6 (lower is better)
Translates to: SCRQHLSSDWEL*GSASRSLRASR
Trigger: ACGCGATGCTCTCAATGATCTGCTCGCGGAACCTCACAGCTCCCAATCCGATGAAAGATGCTGGCGACATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081799.6
CDS GCA 72 bp CCATGTCCTCCTTCGGCTGCACCAACACGTTGTTCTTaGCATAGAGCAGGCGTGTTCTTGAGTTCTGGTGCA +
Preference number: 6 (lower is better)
Translates to: PCPPSAAPTRCS*HRAGVFLSSGA
Trigger: TGCACCAGAACTCAAGAACACGCCTGCTCTATGGCAAGAACAACGTGTTGGTGCAGCCGAAGGAGGACATGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS GCA 72 bp TCTAGGTGCCAGGCTGTTAGGCTGGGTCCGAAACCCTaGATCTCAATCATGTCGCCAGCATCTTTCATCGGA +
Preference number: 6 (lower is better)
Translates to: SRCQAVRLGPKP*ISIMSPASFIG
Trigger: TCCGATGAAAGATGCTGGCGACATGATTGAGATGCAGGGTTTCGGACCCAGCCTAACAGCCTGGCACCTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081799.6
CDS CCA 72 bp TCTAGCTCAGAGTCCCCGAGAGTCCCGTTCATGAGTTaGTTGGGAGTCCACTTCAGGGTTAGGTTCTCTGCA +
Preference number: 6 (lower is better)
Translates to: SSSESPRVPFMS*LGVHFRVRFSA
Trigger: TGCAGAGAACCTAACCCTGAAGTGGACTCCCAACCAACTCATGAACGGGACTCTCGGGGACTCTGAGCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 72 bp TCTTCTCTAGCTCAGAGTCCCCGAGAGTCCCGTTCATaGGTTGGTTGGGAGTCCACTTCAGGGTTAGGTTCT +
Preference number: 6 (lower is better)
Translates to: SSLAQSPRESRS*VGWESTSGLGS
Trigger: AGAACCTAACCCTGAAGTGGACTCCCAACCAACTCATGAACGGGACTCTCGGGGACTCTGAGCTAGAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS TCA 72 bp TCCTGTTCCCGCTTTGGTTTGGAATCTTCCAGGTCCTaGGGTCCAGAGGGCTCAAGATCATCCACAGAGATA +
Preference number: 6 (lower is better)
Translates to: SCSRFGLESSRS*GPEGSRSSTEI
Trigger: TATCTCTGTGGATGATCTTGAGCCCTCTGGACCTCAGGACCTGGAAGATTCCAAACCAAAGCGGGAACAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CCA 72 bp AGGCAAGCCTCCACAGCACCACACAGAGCAATGATGTaGCTGCTATCTTCATGCACGAATTTCCTGGTGACA +
Preference number: 6 (lower is better)
Translates to: RQASTAPHRAMM*LLSSCTNFLVT
Trigger: TGTCACCAGGAAATTCGTGCATGAAGATAGCAGCCACATCATTGCTCTGTGTGGTGCTGTGGAGGCTTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6
CDS CAA 72 bp TGCATCTCAATCATGTCGCCAGCATCTTTCATCGGATaGGGAGCTGTGAGGTTCCGCGAGCAGATCATTGAG +
Preference number: 6 (lower is better)
Translates to: CISIMSPASFIG*GAVRFREQIIE
Trigger: CTCAATGATCTGCTCGCGGAACCTCACAGCTCCCAATCCGATGAAAGATGCTGGCGACATGATTGAGATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081799.6
CDS GCA 72 bp GTACTGTACAACCCTGTCCAGAACTTTCTCCATGAGTaGTGTGCGTACCCATATGTGTTTCAAGGCCTGTGG +
Preference number: 6 (lower is better)
Translates to: VLYNPVQNFLHE*CAYPYVFQGLW
Trigger: CCACAGGCCTTGAAACACATATGGGTACGCACAGCACTCATGGAGAAAGTTCTGGACAGGGTTGTACAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057631.12
ENSMUST00000081799.6