RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SGPL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020097

Ensembl transcript IDs: ENSMUST00000092498.12, ENSMUST00000122259.8, ENSMUST00000126307.2, ENSMUST00000137833.2, ENSMUST00000150258.8, ENSMUST00000155919.8

Found 304 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGCGCTTACCTATGTGGCTATTCACGAAAATGTGGGAAAGGGTCTaGTTGTGGCTCCTCTGGCCCAGGAGAGGGCTCAGGAGTGATCTA +
Preference number: 1 (lower is better)
Translates to: RRLPMWLFTKMWERV*LWLLWPRRGLRSDL
Trigger: TAGATCACTCCTGAGCCCTCTCCTGGGCCAGAGGAGCCACAACCAGACCCTTTCCCACATTTTCGTGAATAGCCACATAGGTAAGCGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 90 bp CTCTGCCTACTTCAGAGCCCCCAATCCCTAAAAGGGAGAAGCAAATaGGAAATTGGCCAGGGATTGGTCCTGTCCCTGTATAGCCCTGGG +
Preference number: 1 (lower is better)
Translates to: LCLLQSPQSLKGRSK*EIGQGLVLSLYSPG
Trigger: CCCAGGGCTATACAGGGACAGGACCAATCCCTGGCCAATTTCCCATTTGCTTCTCCCTTTTAGGGATTGGGGGCTCTGAAGTAGGCAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR GCA 90 bp GGGGAAGGGGCAGGAAGAACACACACTGATGGAGCAAGTGTCCTCTaGACATCTTCACACCCAATGAGGAAGTCAAGGACACTTGTGGAG +
Preference number: 1 (lower is better)
Translates to: GEGAGRTHTDGASVL*TSSHPMRKSRTLVE
Trigger: CTCCACAAGTGTCCTTGACTTCCTCATTGGGTGTGAAGATGTGCAGAGGACACTTGCTCCATCAGTGTGTGTTCTTCCTGCCCCTTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 90 bp GATCTGTCCCAAGTTCTCTCCTATAAGCAGACACACCTCAAAGAGTaGTCTACTTCTGCCAGGGCCTGGGTGAGGACGAGGGTTGTCACT +
Preference number: 1 (lower is better)
Translates to: DLSQVLSYKQTHLKE*STSARAWVRTRVVT
Trigger: AGTGACAACCCTCGTCCTCACCCAGGCCCTGGCAGAAGTAGACCACTCTTTGAGGTGTGTCTGCTTATAGGAGAGAACTTGGGACAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR TCA 90 bp ACACGGTACATAACTGCTTCCTGCCTGATGGCCAGAACACCCCACTaGGGCAGCAGAGACACCCTCTTGCTATCTCACACTTTCCCTAAA +
Preference number: 1 (lower is better)
Translates to: TRYITASCLMARTPH*GSRDTLLLSHTFPK
Trigger: TTTAGGGAAAGTGTGAGATAGCAAGAGGGTGTCTCTGCTGCCTCAGTGGGGTGTTCTGGCCATCAGGCAGGAAGCAGTTATGTACCGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR GCA 90 bp CAAGAAGACGGAGGATATTTCTGCAACCAGCTTCCTGTCAATGGTTaGCTGGGCCATGCCATAGATGGCACCCATTCCTGTGGTCTTAGC +
Preference number: 1 (lower is better)
Translates to: QEDGGYFCNQLPVNG*LGHAIDGTHSCGLS
Trigger: GCTAAGACCACAGGAATGGGTGCCATCTATGGCATGGCCCAGGCAACCATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTCTTCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR CCA 90 bp AGTCCAAGAAGACGGAGGATATTTCTGCAACCAGCTTCCTGTCAATaGTTGCCTGGGCCATGCCATAGATGGCACCCATTCCTGTGGTCT +
Preference number: 1 (lower is better)
Translates to: SPRRRRIFLQPASCQ*LPGPCHRWHPFLWS
Trigger: AGACCACAGGAATGGGTGCCATCTATGGCATGGCCCAGGCAACCATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTCTTCTTGGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR GCA 90 bp GGGGTCCGTAGTATAAAGGCAGTCCAAGAAGACGGAGGATATTTCTaGAACCAGCTTCCTGTCAATGGTTGCCTGGGCCATGCCATAGAT +
Preference number: 1 (lower is better)
Translates to: GVRSIKAVQEDGGYF*NQLPVNGCLGHAID
Trigger: ATCTATGGCATGGCCCAGGCAACCATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTCTTCTTGGACTGCCTTTATACTACGGACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR TCA 90 bp AATTGTGTGCAGTCTGTTCCAAACGCCAAGAACCTTCTGAAGGCCTaGAGCTCCAAGGAACTCACAAGGGTCAAAGTTCAGCGGGGCTTT +
Preference number: 1 (lower is better)
Translates to: NCVQSVPNAKNLLKA*SSKELTRVKVQRGF
Trigger: AAAGCCCCGCTGAACTTTGACCCTTGTGAGTTCCTTGGAGCTTCAGGCCTTCAGAAGGTTCTTGGCGTTTGGAACAGACTGCACACAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR TCA 90 bp AGATGTCAAATTGTGTGCAGTCTGTTCCAAACGCCAAGAACCTTCTaGAGGCCTGAAGCTCCAAGGAACTCACAAGGGTCAAAGTTCAGC +
Preference number: 1 (lower is better)
Translates to: RCQIVCSLFQTPRTF*RPEAPRNSQGSKFS
Trigger: GCTGAACTTTGACCCTTGTGAGTTCCTTGGAGCTTCAGGCCTTCAGAAGGTTCTTGGCGTTTGGAACAGACTGCACACAATTTGACATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR CCA 90 bp AGCCCCACAAGGAAACAAAGGAGTCCTGAGGCTGAAGCTATCTTATaGTTTATCCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAAT +
Preference number: 1 (lower is better)
Translates to: SPTRKQRSPEAEAIL*FILLCSTEPVQMSN
Trigger: ATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACCATAAGATAGCTTCAGCCTCAGGACTCCTTTGTTTCCTTGTGGGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR GCA 90 bp CAAAGGAGTCCTGAGGCTGAAGCTATCTTATGGTTTATCCTATTGTaGTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTCTGTT +
Preference number: 1 (lower is better)
Translates to: QRSPEAEAILWFILL*STEPVQMSNCVQSV
Trigger: AACAGACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACCATAAGATAGCTTCAGCCTCAGGACTCCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 90 bp ATAAGAACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATaGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAAC +
Preference number: 1 (lower is better)
Translates to: IRTNKYMTANRHLQR*QQPWSCTRQRSTSN
Trigger: GTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGTTCTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR GCA 90 bp AAAGCAATTTCTAGGGTAACATTAATAACCAGGACAGACTCACTATaGAGTGGGATCCTTCAGGGTCTTCAAACTAAAAGCCCCACAAGG +
Preference number: 1 (lower is better)
Translates to: KAISRVTLITRTDSL*SGILQGLQTKSPTR
Trigger: CCTTGTGGGGCTTTTAGTTTGAAGACCCTGAAGGATCCCACTGCATAGTGAGTCTGTCCTGGTTATTAATGTTACCCTAGAAATTGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR GCA 90 bp GTTCATTTCTTACCCTACAGTAATAAGAACAAACAAGTATATGACTaGCAACAGGCATCTCCAAAGATGGCAGCAGCCATGGTCATGCAC +
Preference number: 1 (lower is better)
Translates to: VHFLPYSNKNKQVYD*QQASPKMAAAMVMH
Trigger: GTGCATGACCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGTTCTTATTACTGTAGGGTAAGAAATGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 90 bp TTCTTCATGATTTGTGTGACTGATTCCCGGATATCCTTTAGGAACTaGATCGCCACTCGCTTCCGAGTATGTACTAACGTAATGCAGAAA +
Preference number: 1 (lower is better)
Translates to: FFMICVTDSRISFRN*IATRFRVCTNVMQK
Trigger: TTTCTGCATTACGTTAGTACATACTCGGAAGCGAGTGGCGATCCAGTTCCTAAAGGATATCCGGGAATCAGTCACACAAATCATGAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAGAACCTCCCCCTGCGTaGGACAGACAGACACCCACC +
Preference number: 2 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQEPPPA*DRQTPT
Trigger: GGTGGGTGTCTGTCTGTCCCACGCAGGGGGAGGTTC...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp GGGGCAGGAAGAACACACACTGATGGAGCAAGTGTCCTCTGCACATCTTCACACCTGCCAGGGCCTGGGTaGGGACGAGGGTTGTCACTC +
Preference number: 2 (lower is better)
Translates to: GAGRTHTDGASVLCTSSHLPGPG*GRGLSL
Trigger: GAGTGACAACCCTCGTCCTCACCCAGGCCCTGGCAG...GTGTGAAGATGTGCAGAGGACACTTGCTCCATCAGTGTGTGTTCTTCCTGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCGCCAGAACACCCCACTaGGGCAGCAGAGACACCCTC +
Preference number: 2 (lower is better)
Translates to: GCFSILATCKPERRPRGVARTPH*GSRDTL
Trigger: GAGGGTGTCTCTGCTGCCTCAGTGGGGTGTTCTGGC...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAATGTGGGAAAGGGTCTaGTTGTGGCTCCTCTGGCCC +
Preference number: 2 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQMWERV*LWLLWP
Trigger: GGGCCAGAGGAGCCACAACCAGACCCTTTCCCACAT...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAGAGCATGGCTTCTGGTaGTCTGTCCCAAGTTCTCTC +
Preference number: 2 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQEHGFW*SVPSSL
Trigger: GAGAGAACTTGGGACAGATCACCAGAAGCCATGCTC...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCAGAGTGGTCTACTTCTaGCAGGGCCTGGGTGAGGAC +
Preference number: 2 (lower is better)
Translates to: GCFSILATCKPERRPRGVRVVYF*QGLGED
Trigger: GTCCTCACCCAGGCCCTGGCAGAAGTAGACCACTCT...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAACCACCTCAACAAAATaGACACGGCTGGCTGTTCTG +
Preference number: 2 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQTTSTK*TRLAVL
Trigger: CAGAACAGCCAGCCGTGTTCATTTTGTTGAGGTGGT...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAACAAGGGGAAGACTACTaGCCACATGTGCAGGATGTA +
Preference number: 2 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQQGEDY*PHVQDV
Trigger: TACATCCTGCACATGTGGGCAGTAGTCTTCCCCTTG...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAAGATGGCAGCAGCCATaGTCATGCACAAGACAAAGG +
Preference number: 2 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQRWQQP*SCTRQR
Trigger: CCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCT...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTGAAAGGGTCTGGTTGTaGCTCCTCTGGCCCAGGAGA +
Preference number: 2 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPERVWL*LLWPRR
Trigger: TCTCCTGGGCCAGAGGAGCCACAACCAGACCCTTTC...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp AGCTGTAATGACAGTGATCCTGAGGACAAGAGGCATCTCCTGAAGCAGAGGCTGATGTGGGAAAGGGTCTaGTTGTGGCTCCTCTGGCCC +
Preference number: 2 (lower is better)
Translates to: SCNDSDPEDKRHLLKQRLMWERV*LWLLWP
Trigger: GGGCCAGAGGAGCCACAACCAGACCCTTTCCCACAT...CAGCCTCTGCTTCAGGAGATGCCTCTTGTCCTCAGGATCACTGTCATTACAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CAA 90 bp ACACCAGCACCCCATGCTAGTGCTACCACAAAGGAAGGGAGCGGCTaGGTCCCTGGCTCTGCTGAGACTATAAAGGATGCTTCTCCATTT +
Preference number: 2 (lower is better)
Translates to: TPAPHASATTKEGSG*VPGSAETIKDASPF
Trigger: AAATGGAGAAGCATCCTTTATAGTCTCAGCAGAGCCAGGGACCAAGCCGCTCCCTTCCTTTGTGGTAGCACTAGCATGGGGTGCTGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp TGGGAAATTGGCCAGGGATTGGTCCTGTCCCTGTATAGCCCTGGGCAATCAGTCAACCTTCTGAAGGCCTaGAGCTCCAAGGAACTCACA +
Preference number: 2 (lower is better)
Translates to: WEIGQGLVLSLYSPGQSVNLLKA*SSKELT
Trigger: TGTGAGTTCCTTGGAGCTTCAGGCCTTCAGAAGGTT...GACTGATTGCCCAGGGCTATACAGGGACAGGACCAATCCCTGGCCAATTTCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAACATCTTCACACCCAATaGGGAAGTCAAGGACACTTG +
Preference number: 2 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQHLHTQ*GSQGHL
Trigger: CAAGTGTCCTTGACTTCCTCATTGGGTGTGAAGATG...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAATGGCCGACGTGTGCTTaGAAAAGTAAAGCAAGCTGT +
Preference number: 2 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQWPTCA*KSKASC
Trigger: ACAGCTTGCTTTACTTTTCCAAGCACACGTCGGCCA...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp CCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTCTGTTCCACGCCAAGAACCTTCTaGAGGCCTGAAGCTCCAAGG +
Preference number: 2 (lower is better)
Translates to: PIVLYGASPDVKLCAVCSTPRTF*RPEAPR
Trigger: CCTTGGAGCTTCAGGCCTTCAGAAGGTTCTTGGCGT...GGAACAGACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp AGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACATTAGAGACCTGCCAGGGCCTGGGTaGGGACGAGGGTTGTCACTC +
Preference number: 2 (lower is better)
Translates to: RVIAAVRKEHRDGRDIRDLPGPG*GRGLSL
Trigger: GAGTGACAACCCTCGTCCTCACCCAGGCCCTGGCAG...GTCTCTAATGTCCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTGAGCATGGCTTCTGGTaGTCTGTCCCAAGTTCTCTC +
Preference number: 2 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPEHGFW*SVPSSL
Trigger: GAGAGAACTTGGGACAGATCACCAGAAGCCATGCTC...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp AGGCCAGTAGTCTGGCCGACGTGTGCTTGGAAAAGTAAAGCAAGCTGTAATGACTGGTTGCCTGGGCCATaGCATAGATGGCACCCATTC +
Preference number: 2 (lower is better)
Translates to: RPVVWPTCAWKSKASCNDWLPGP*HRWHPF
Trigger: GAATGGGTGCCATCTATGGCATGGCCCAGGCAACCA...GTCATTACAGCTTGCTTTACTTTTCCAAGCACACGTCGGCCAGACTACTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp TGGGAAATTGGCCAGGGATTGGTCCTGTCCCTGTATAGCCCTGGGCAATCAGTCAGACTCACTATGCAGTaGGATCCTTCAGGGTCTTCA +
Preference number: 2 (lower is better)
Translates to: WEIGQGLVLSLYSPGQSVRLTMQ*DPSGSS
Trigger: TGAAGACCCTGAAGGATCCCACTGCATAGTGAGTCT...GACTGATTGCCCAGGGCTATACAGGGACAGGACCAATCCCTGGCCAATTTCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp AGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACATTAGAGACGCCAGAACACCCCACTaGGGCAGCAGAGACACCCTC +
Preference number: 2 (lower is better)
Translates to: RVIAAVRKEHRDGRDIRDARTPH*GSRDTL
Trigger: GAGGGTGTCTCTGCTGCCTCAGTGGGGTGTTCTGGC...GTCTCTAATGTCCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAAGATGTCAAATTGTGTaGAGTCTGTTCCAAACGCCA +
Preference number: 2 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQRCQIV*SLFQTP
Trigger: TGGCGTTTGGAACAGACTGCACACAATTTGACATCT...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGAAGGACAGACTCACTATaGAGTGGGATCCTTCAGGGT +
Preference number: 2 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGRTDSL*SGILQG
Trigger: ACCCTGAAGGATCCCACTGCATAGTGAGTCTGTCCT...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTAACACGGTACATAACTaGTTCCTGCCTGATGGCCAG +
Preference number: 2 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPNTVHN*FLPDGQ
Trigger: CTGGCCATCAGGCAGGAAGCAGTTATGTACCGTGTT...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGACAGCAGCCATGGTCATaGACAAGACAAAGGAGCACT +
Preference number: 2 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGQQPWS*TRQRST
Trigger: AGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTG...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTCAAGGGGAAGACTACTaGCCACATGTGCAGGATGTA +
Preference number: 2 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPQGEDY*PHVQDV
Trigger: TACATCCTGCACATGTGGGCAGTAGTCTTCCCCTTG...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCGTGGACATATACACATaGCCTGTGATGAACCAGCTG +
Preference number: 2 (lower is better)
Translates to: GCFSILATCKPERRPRGVVDIYT*PVMNQL
Trigger: CAGCTGGTTCATCACAGGGCATGTGTATATGTCCAC...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGACTTCCTGTCAATGGTTaGCTGGGCCATGCCATAGAT +
Preference number: 2 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGLPVNG*LGHAID
Trigger: ATCTATGGCATGGCCCAGGCAACCATTGACAGGAAG...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp GCCCTGAGTCACGGGGTCCGTAGTATAAAGGCAGTCCAAGAAGACGGAGGATATAGACTCACTATGCAGTaGGATCCTTCAGGGTCTTCA +
Preference number: 2 (lower is better)
Translates to: ALSHGVRSIKAVQEDGGYRLTMQ*DPSGSS
Trigger: TGAAGACCCTGAAGGATCCCACTGCATAGTGAGTCT...ATATCCTCCGTCTTCTTGGACTGCCTTTATACTACGGACCCCGTGACTCAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp AAGGCAGTCCAAGAAGACGGAGGATATTTCTGCAACCAGCTTCCTGTCAATGGTGGGCCATGCCATAGATaGCACCCATTCCTGTGGTCT +
Preference number: 2 (lower is better)
Translates to: KAVQEDGGYFCNQLPVNGGPCHR*HPFLWS
Trigger: AGACCACAGGAATGGGTGCCATCTATGGCATGGCCC...ACCATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTCTTCTTGGACTGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCGAACAAACAAGTATATaGCTGCCAACAGGCATCTCC +
Preference number: 2 (lower is better)
Translates to: GCFSILATCKPERRPRGVEQTSI*LPTGIS
Trigger: GGAGATGCCTGTTGGCAGTCATATACTTGTTTGTTC...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp CACAAGGGTCAAAGTTCAGCGGGGCTTTGGAGAACCGTTCATCTGGTTGCCCTGAGATGTCAAATTGTGTaGAGTCTGTTCCAAACGCCA +
Preference number: 2 (lower is better)
Translates to: HKGQSSAGLWRTVHLVALRCQIV*SLFQTP
Trigger: TGGCGTTTGGAACAGACTGCACACAATTTGACATCT...CAGGGCAACCAGATGAACGGTTCTCCAAAGCCCCGCTGAACTTTGACCCTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp AGGCCAGTAGTCTGGCCGACGTGTGCTTGGAAAAGTAAAGCAAGCTGTAATGACTACATAACTGCTTCCTaGCTGATGGCCAGAACACCC +
Preference number: 2 (lower is better)
Translates to: RPVVWPTCAWKSKASCNDYITAS*LMARTP
Trigger: GGGTGTTCTGGCCATCAGGCAGGAAGCAGTTATGTA...GTCATTACAGCTTGCTTTACTTTTCCAAGCACACGTCGGCCAGACTACTGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGAACACGGTACATAACTaGTTCCTGCCTGATGGCCAG +
Preference number: 2 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLNTVHN*FLPDGQ
Trigger: CTGGCCATCAGGCAGGAAGCAGTTATGTACCGTGTT...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp ATTGCTTTTGAAGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGGAACCTCCCCCTGCGTaGGACAGACAGACACCCACC +
Preference number: 2 (lower is better)
Translates to: IAFEGLLLQLGKNIEMVGEPPPA*DRQTPT
Trigger: GGTGGGTGTCTGTCTGTCCCACGCAGGGGGAGGTTC...CCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCTTCAAAAGCAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCAGGCGCTTACCTATGTaGCTATTCACGAAAATGTGG +
Preference number: 2 (lower is better)
Translates to: GCFSILATCKPERRPRGVRRLPM*LFTKMW
Trigger: CCACATTTTCGTGAATAGCCACATAGGTAAGCGCCT...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTAAGCAAATGGGAAATTaGCCAGGGATTGGTCCTGTC +
Preference number: 2 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPKQMGN*PGIGPV
Trigger: GACAGGACCAATCCCTGGCCAATTTCCCATTTGCTT...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp ACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGGCAGCAGCCATGGTCATaGACAAGACAAAGGAGCACT +
Preference number: 2 (lower is better)
Translates to: TNKYMTANRHLQRWQQPWQQPWS*TRQRST
Trigger: AGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTG...CCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp AGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACATTAGAGACAGAGTGGTCTACTTCTaGCAGGGCCTGGGTGAGGAC +
Preference number: 2 (lower is better)
Translates to: RVIAAVRKEHRDGRDIRDRVVYF*QGLGED
Trigger: GTCCTCACCCAGGCCCTGGCAGAAGTAGACCACTCT...GTCTCTAATGTCCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp AACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGAGGCATCTCCAAAGATaGCAGCAGCCATGGTCATGC +
Preference number: 2 (lower is better)
Translates to: NKQVYDCQQASPKMAAAMRHLQR*QQPWSC
Trigger: GCATGACCATGGCTGCTGCCATCTTTGGAGATGCCT...CATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp AGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACATTAGAGACATGTGGGAAAGGGTCTaGTTGTGGCTCCTCTGGCCC +
Preference number: 2 (lower is better)
Translates to: RVIAAVRKEHRDGRDIRDMWERV*LWLLWP
Trigger: GGGCCAGAGGAGCCACAACCAGACCCTTTCCCACAT...GTCTCTAATGTCCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp GGGGCAGGAAGAACACACACTGATGGAGCAAGTGTCCTCTGCACATCTTCACACTTGTCACTCACTGAATaGGTAGAAAGGCACATGGTA +
Preference number: 2 (lower is better)
Translates to: GAGRTHTDGASVLCTSSHLSLTE*VERHMV
Trigger: TACCATGTGCCTTTCTACCCATTCAGTGAGTGACAA...GTGTGAAGATGTGCAGAGGACACTTGCTCCATCAGTGTGTGTTCTTCCTGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CAA 90 bp ATGGTTTATCCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATaGTGTGCAGTCTGTTCCAAACGCCAAGAACCTTCTGAAGGCCTG +
Preference number: 2 (lower is better)
Translates to: MVYPIVLYGASPDVK*CAVCSKRQEPSEGL
Trigger: CAGGCCTTCAGAAGGTTCTTGGCGTTTGGAACAGACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp ACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGGCATCTTCACACCCAATaGGGAAGTCAAGGACACTTG +
Preference number: 2 (lower is better)
Translates to: TNKYMTANRHLQRWQQPWHLHTQ*GSQGHL
Trigger: CAAGTGTCCTTGACTTCCTCATTGGGTGTGAAGATG...CCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTAGATGTCAAATTGTGTaGAGTCTGTTCCAAACGCCA +
Preference number: 2 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPRCQIV*SLFQTP
Trigger: TGGCGTTTGGAACAGACTGCACACAATTTGACATCT...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp AGCCTCATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCAGGACAGACTCACTATaGAGTGGGATCCTTCAGGGT +
Preference number: 2 (lower is better)
Translates to: SLIMHCRAYRREVDIYTCRTDSL*SGILQG
Trigger: ACCCTGAAGGATCCCACTGCATAGTGAGTCTGTCCT...GCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTATGAGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp AGCCTCATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCTACATAACTGCTTCCTaGCTGATGGCCAGAACACCC +
Preference number: 2 (lower is better)
Translates to: SLIMHCRAYRREVDIYTCYITAS*LMARTP
Trigger: GGGTGTTCTGGCCATCAGGCAGGAAGCAGTTATGTA...GCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTATGAGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp ACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGGGAGCACTTCAAACCCTaGCAAGGGAATATACTCCAG +
Preference number: 2 (lower is better)
Translates to: TNKYMTANRHLQRWQQPWEHFKP*QGNILQ
Trigger: CTGGAGTATATTCCCTTGGCAGGGTTTGAAGTGCTC...CCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp ATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCCTGTGCAGCAGCCATGGTCATaGACAAGACAAAGGAGCACT +
Preference number: 2 (lower is better)
Translates to: IMHCRAYRREVDIYTCPVQQPWS*TRQRST
Trigger: AGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTG...CACAGGGCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp ATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCCTGTGGGAGCAAGTGTCCTCTaGACATCTTCACACCCAATG +
Preference number: 2 (lower is better)
Translates to: IMHCRAYRREVDIYTCPVGASVL*TSSHPM
Trigger: CATTGGGTGTGAAGATGTGCAGAGGACACTTGCTCC...CACAGGGCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp ATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCCTGTGAGATGGCAGCAGCCATaGTCATGCACAAGACAAAGG +
Preference number: 2 (lower is better)
Translates to: IMHCRAYRREVDIYTCPVRWQQP*SCTRQR
Trigger: CCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCT...CACAGGGCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGATTGTCACTCACTGAATaGGTAGAAAGGCACATGGTA +
Preference number: 2 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGLSLTE*VERHMV
Trigger: TACCATGTGCCTTTCTACCCATTCAGTGAGTGACAA...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp ATTGCTTTTGAAGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACGCCAAGAACCTTCTaGAGGCCTGAAGCTCCAAGG +
Preference number: 2 (lower is better)
Translates to: IAFEGLLLQLGKNIEMVGTPRTF*RPEAPR
Trigger: CCTTGGAGCTTCAGGCCTTCAGAAGGTTCTTGGCGT...CCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCTTCAAAAGCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp ACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGGGAACAAACAAGTATATaGCTGCCAACAGGCATCTCC +
Preference number: 2 (lower is better)
Translates to: TNKYMTANRHLQRWQQPWEQTSI*LPTGIS
Trigger: GGAGATGCCTGTTGGCAGTCATATACTTGTTTGTTC...CCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp AGCCTCATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCATCTTCACACCCAATaGGGAAGTCAAGGACACTTG +
Preference number: 2 (lower is better)
Translates to: SLIMHCRAYRREVDIYTCHLHTQ*GSQGHL
Trigger: CAAGTGTCCTTGACTTCCTCATTGGGTGTGAAGATG...GCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTATGAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp ATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCCTGTGGCAGAGACACCCTCTTaGTATCTCACACTTTCCCTA +
Preference number: 2 (lower is better)
Translates to: IMHCRAYRREVDIYTCPVAETPS*YLTLSL
Trigger: TAGGGAAAGTGTGAGATAGCAAGAGGGTGTCTCTGC...CACAGGGCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp AGCCTCATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCAGACTCACTATGCAGTaGGATCCTTCAGGGTCTTCA +
Preference number: 2 (lower is better)
Translates to: SLIMHCRAYRREVDIYTCRLTMQ*DPSGSS
Trigger: TGAAGACCCTGAAGGATCCCACTGCATAGTGAGTCT...GCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTATGAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp GTGATCTGTCCCAAGTTCTCTCCTATAAGCAGACACACCTCAAAGAGTGGTCTATGGCCGACGTGTGCTTaGAAAAGTAAAGCAAGCTGT +
Preference number: 2 (lower is better)
Translates to: VICPKFSPISRHTSKSGLWPTCA*KSKASC
Trigger: ACAGCTTGCTTTACTTTTCCAAGCACACGTCGGCCA...TAGACCACTCTTTGAGGTGTGTCTGCTTATAGGAGAGAACTTGGGACAGATCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGAACGTAATGCAGAAATaGATGCTATGGGAGAAAGGA +
Preference number: 2 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLNVMQK*MLWEKG
Trigger: TCCTTTCTCCCATAGCATTCATTTCTGCATTACGTT...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCCATCCAGAGAGGCAGTaGCAACAGCCAGAAAGCCCT +
Preference number: 2 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTHPERQ*QQPESP
Trigger: AGGGCTTTCTGGCTGTTGGCACTGCCTCTCTGGATG...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp GTGATCTGTCCCAAGTTCTCTCCTATAAGCAGACACACCTCAAAGAGTGGTCTAGACGGAGGATATTTCTaGAACCAGCTTCCTGTCAAT +
Preference number: 2 (lower is better)
Translates to: VICPKFSPISRHTSKSGLDGGYF*NQLPVN
Trigger: ATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTC...TAGACCACTCTTTGAGGTGTGTCTGCTTATAGGAGAGAACTTGGGACAGATCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCAGTCAAGGACACTTGTaGAGTGTTTTCTTCAATAAA +
Preference number: 2 (lower is better)
Translates to: GCFSILATCKPERRPRGVSQGHL*SVFFNK
Trigger: TTTATTGAAGAAAACACTCCACAAGTGTCCTTGACT...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCCCAGCTTCCTGTCAATaGTTGCCTGGGCCATGCCAT +
Preference number: 2 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTPASCQ*LPGPCH
Trigger: ATGGCATGGCCCAGGCAACCATTGACAGGAAGCTGG...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR CAA 90 bp AAACAAAGGAGTCCTGAGGCTGAAGCTATCTTATGGTTTATCCTATaGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTCT +
Preference number: 2 (lower is better)
Translates to: KQRSPEAEAILWFIL*CSTEPVQMSNCVQS
Trigger: AGACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACCATAAGATAGCTTCAGCCTCAGGACTCCTTTGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp ATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCCTGTGCAGATTCTCATTACATaGAGGCTTAAGGCAATGTCC +
Preference number: 2 (lower is better)
Translates to: IMHCRAYRREVDIYTCPVQILIT*RLKAMS
Trigger: GGACATTGCCTTAAGCCTTCATGTAATGAGAATCTG...CACAGGGCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp ATTGCTTTTGAAGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGATACTCAGGAATCCCTaGGAAGGGGAAGGAACAGAG +
Preference number: 2 (lower is better)
Translates to: IAFEGLLLQLGKNIEMVGILRNP*EGEGTE
Trigger: CTCTGTTCCTTCCCCTTCTCAGGGATTCCTGAGTAT...CCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCTTCAAAAGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp AGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACATTAGAGACGTGGACATATACACATaGCCTGTGATGAACCAGCTG +
Preference number: 2 (lower is better)
Translates to: RVIAAVRKEHRDGRDIRDVDIYT*PVMNQL
Trigger: CAGCTGGTTCATCACAGGGCATGTGTATATGTCCAC...GTCTCTAATGTCCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCAGGCATCTCCAAAGATaGCAGCAGCCATGGTCATGC +
Preference number: 2 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTRHLQR*QQPWSC
Trigger: GCATGACCATGGCTGCTGCCATCTTTGGAGATGCCT...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp AAGACAAAGGAGCACTTCAAACCCTGCCAAGGGAATATACTCCAGTTATTTAAAAACCTTCTGAAGGCCTaGAGCTCCAAGGAACTCACA +
Preference number: 2 (lower is better)
Translates to: KTKEHFKPCQGNILQLFKNLLKA*SSKELT
Trigger: TGTGAGTTCCTTGGAGCTTCAGGCCTTCAGAAGGTT...TTTAAATAACTGGAGTATATTCCCTTGGCAGGGTTTGAAGTGCTCCTTTGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp AAGACAAAGGAGCACTTCAAACCCTGCCAAGGGAATATACTCCAGTTATTTAAATCCTTCCATCGTGTATaGGCAATGAAGGGTGGGGTT +
Preference number: 2 (lower is better)
Translates to: KTKEHFKPCQGNILQLFKSFHRV*AMKGGV
Trigger: AACCCCACCCTTCATTGCTCATACACGATGGAAGGA...TTTAAATAACTGGAGTATATTCCCTTGGCAGGGTTTGAAGTGCTCCTTTGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp ATTGCTTTTGAAGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGGCAGAGACACCCTCTTaGTATCTCACACTTTCCCTA +
Preference number: 2 (lower is better)
Translates to: IAFEGLLLQLGKNIEMVGAETPS*YLTLSL
Trigger: TAGGGAAAGTGTGAGATAGCAAGAGGGTGTCTCTGC...CCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCTTCAAAAGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp GCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAACACATCCAGAGAGGCAGTaGCAACAGCCAGAAAGCCCT +
Preference number: 2 (lower is better)
Translates to: ALDSLKNMFISYPTVIRTHPERQ*QQPESP
Trigger: AGGGCTTTCTGGCTGTTGGCACTGCCTCTCTGGATG...TGTTCTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCCATACAGGAGGGAAGTaGACATATACACATGCCCTG +
Preference number: 2 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTHTGGK*TYTHAL
Trigger: CAGGGCATGTGTATATGTCCACTTCCCTCCTGTATG...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR TCA 90 bp GAAAGCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAACCTTCTGAAGGCCTaGAGCTCCAAGGAACTCACA +
Preference number: 2 (lower is better)
Translates to: ESPRFSEKHVHFLPYSNKNLLKA*SSKELT
Trigger: TGTGAGTTCCTTGGAGCTTCAGGCCTTCAGAAGGTT...CTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGCTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR GCA 90 bp GCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAACAAACACGGTACATAACTaGTTCCTGCCTGATGGCCAG +
Preference number: 2 (lower is better)
Translates to: ALDSLKNMFISYPTVIRTNTVHN*FLPDGQ
Trigger: CTGGCCATCAGGCAGGAAGCAGTTATGTACCGTGTT...TGTTCTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp AACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGAGTCAAGGACACTTGTaGAGTGTTTTCTTCAATAAA +
Preference number: 2 (lower is better)
Translates to: NKQVYDCQQASPKMAAAMSQGHL*SVFFNK
Trigger: TTTATTGAAGAAAACACTCCACAAGTGTCCTTGACT...CATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCAATCATGAATTAAAATaGCTGCAGCGGGTCCCTCTG +
Preference number: 2 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTNHELK*LQRVPL
Trigger: CAGAGGGACCCGCTGCAGCCATTTTAATTCATGATT...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CCA 90 bp GAAAGCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAGTCAAGGACACTTGTaGAGTGTTTTCTTCAATAAA +
Preference number: 2 (lower is better)
Translates to: ESPRFSEKHVHFLPYSNKSQGHL*SVFFNK
Trigger: TTTATTGAAGAAAACACTCCACAAGTGTCCTTGACT...CTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGCTTTC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR TCA 72 bp GAACCTCCCCCTGCGTGGGACAGACAGACACCCACCTaGGGGAACACGGTACATAACTGCTTCCTGCCTGAT +
Preference number: 3 (lower is better)
Translates to: EPPPAWDRQTPT*GNTVHNCFLPD
Trigger: ATCAGGCAGGAAGCAGTTATGTACCGTGTTCCCTCAGGTGGGTGTCTGTCTGTCCCACGCAGGGGGAGGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 72 bp CACTTCCTAAGGAGGGTGAGGAAGAGCCTGGTGGTCTaGCTCTCCCAGCGAGCAATGCCCAGGCTGAATACT +
Preference number: 3 (lower is better)
Translates to: HFLRRVRKSLVV*LSQRAMPRLNT
Trigger: AGTATTCAGCCTGGGCATTGCTCGCTGGGAGAGCCAGACCACCAGGCTCTTCCTCACCCTCCTTAGGAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CAA 90 bp AGCTGTAATGACAGTGATCCTGAGGACAAGAGGCATCTCCTGAAGCAGAGGCTGTGGGAAAGGGTCTGGTaGTGGCTCCTCTGGCCCAGG +
Preference number: 3 (lower is better)
Translates to: SCNDSDPEDKRHLLKQRLWERVW*WLLWPR
Trigger: CCTGGGCCAGAGGAGCCACAACCAGACCCTTTCCCA...CAGCCTCTGCTTCAGGAGATGCCTCTTGTCCTCAGGATCACTGTCATTACAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR TCA 72 bp GCCAGGGCCTGGGTGAGGACGAGGGTTGTCACTCACTaGATGGGTAGAAAGGCACATGGTACGGTCATCAGA +
Preference number: 3 (lower is better)
Translates to: ARAWVRTRVVTH*MGRKAHGTVIR
Trigger: TCTGATGACCGTACCATGTGCCTTTCTACCCATTCAGTGAGTGACAACCCTCGTCCTCACCCAGGCCCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 72 bp ACGAAAATGTGGGAAAGGGTCTGGTTGTGGCTCCTCTaGCCCAGGAGAGGGCTCAGGAGTGATCTACCCCTA +
Preference number: 3 (lower is better)
Translates to: TKMWERVWLWLL*PRRGLRSDLPL
Trigger: TAGGGGTAGATCACTCCTGAGCCCTCTCCTGGGCCAGAGGAGCCACAACCAGACCCTTTCCCACATTTTCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 72 bp CCTATGTGGCTATTCACGAAAATGTGGGAAAGGGTCTaGTTGTGGCTCCTCTGGCCCAGGAGAGGGCTCAGG +
Preference number: 3 (lower is better)
Translates to: PMWLFTKMWERV*LWLLWPRRGLR
Trigger: CCTGAGCCCTCTCCTGGGCCAGAGGAGCCACAACCAGACCCTTTCCCACATTTTCGTGAATAGCCACATAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CAA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGTGGGAAAGGGTCTGGTaGTGGCTCCTCTGGCCCAGG +
Preference number: 3 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLWERVW*WLLWPR
Trigger: CCTGGGCCAGAGGAGCCACAACCAGACCCTTTCCCA...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 72 bp TGGCTATTCACGAAAATGTGGGAAAGGGTCTGGTTGTaGCTCCTCTGGCCCAGGAGAGGGCTCAGGAGTGAT +
Preference number: 3 (lower is better)
Translates to: WLFTKMWERVWL*LLWPRRGLRSD
Trigger: ATCACTCCTGAGCCCTCTCCTGGGCCAGAGGAGCCACAACCAGACCCTTTCCCACATTTTCGTGAATAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR GCA 72 bp GGAGGATATTTCTGCAACCAGCTTCCTGTCAATGGTTaGCTGGGCCATGCCATAGATGGCACCCATTCCTGT +
Preference number: 3 (lower is better)
Translates to: GGYFCNQLPVNG*LGHAIDGTHSC
Trigger: ACAGGAATGGGTGCCATCTATGGCATGGCCCAGGCAACCATTGACAGGAAGCTGGTTGCAGAAATATCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR CCA 72 bp GTTCTGTCCTGTTTCCACCGCACAGACTGTCAATGGTaGCTCCTTCCATCGTGTATGAGCAATGAAGGGTGG +
Preference number: 3 (lower is better)
Translates to: VLSCFHRTDCQW*LLPSCMSNEGW
Trigger: CCACCCTTCATTGCTCATACACGATGGAAGGAGCCACCATTGACAGTCTGTGCGGTGGAAACAGGACAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR CCA 72 bp GCTGTTCTGTCCTGTTTCCACCGCACAGACTGTCAATaGTGGCTCCTTCCATCGTGTATGAGCAATGAAGGG +
Preference number: 3 (lower is better)
Translates to: AVLSCFHRTDCQ*WLLPSCMSNEG
Trigger: CCCTTCATTGCTCATACACGATGGAAGGAGCCACCATTGACAGTCTGTGCGGTGGAAACAGGACAGAACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR CCA 72 bp AGACGGAGGATATTTCTGCAACCAGCTTCCTGTCAATaGTTGCCTGGGCCATGCCATAGATGGCACCCATTC +
Preference number: 3 (lower is better)
Translates to: RRRIFLQPASCQ*LPGPCHRWHPF
Trigger: GAATGGGTGCCATCTATGGCATGGCCCAGGCAACCATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR CCA 72 bp ACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATaGTCATGCACAAGACAAAGGAGCACTTCAAACCCT +
Preference number: 3 (lower is better)
Translates to: TANRHLQRWQQP*SCTRQRSTSNP
Trigger: AGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 72 bp CTGCCCACATGTGCAGGATGTAGGCGCTTACCTATGTaGCTATTCACGAAAATGTGGGAAAGGGTCTGGTTG +
Preference number: 3 (lower is better)
Translates to: LPTCAGCRRLPM*LFTKMWERVWL
Trigger: CAACCAGACCCTTTCCCACATTTTCGTGAATAGCCACATAGGTAAGCGCCTACATCCTGCACATGTGGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 72 bp CTTCAGAGCCCCCAATCCCTAAAAGGGAGAAGCAAATaGGAAATTGGCCAGGGATTGGTCCTGTCCCTGTAT +
Preference number: 3 (lower is better)
Translates to: LQSPQSLKGRSK*EIGQGLVLSLY
Trigger: ATACAGGGACAGGACCAATCCCTGGCCAATTTCCCATTTGCTTCTCCCTTTTAGGGATTGGGGGCTCTGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR TCA 72 bp TGGTTTTTGGCACGAACAAGAACCACCTCAACAAAATaGACACGGCTGGCTGTTCTGTCCTGTTTCCACCGC +
Preference number: 3 (lower is better)
Translates to: WFLARTRTTSTK*TRLAVLSCFHR
Trigger: GCGGTGGAAACAGGACAGAACAGCCAGCCGTGTTCATTTTGTTGAGGTGGTTCTTGTTCGTGCCAAAAACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR GCA 72 bp GCAGGAAGAACACACACTGATGGAGCAAGTGTCCTCTaGACATCTTCACACCCAATGAGGAAGTCAAGGACA +
Preference number: 3 (lower is better)
Translates to: AGRTHTDGASVL*TSSHPMRKSRT
Trigger: TGTCCTTGACTTCCTCATTGGGTGTGAAGATGTGCAGAGGACACTTGCTCCATCAGTGTGTGTTCTTCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CAA 90 bp AAGGCAGTCCAAGAAGACGGAGGATATTTCTGCAACCAGCTTCCTGTCAATGGTAGCAGAGACACCCTCTaGCTATCTCACACTTTCCCT +
Preference number: 3 (lower is better)
Translates to: KAVQEDGGYFCNQLPVNGSRDTL*LSHTFP
Trigger: AGGGAAAGTGTGAGATAGCAAGAGGGTGTCTCTGCT...ACCATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTCTTCTTGGACTGCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR GCA 72 bp AGTATAAAGGCAGTCCAAGAAGACGGAGGATATTTCTaGAACCAGCTTCCTGTCAATGGTTGCCTGGGCCAT +
Preference number: 3 (lower is better)
Translates to: SIKAVQEDGGYF*NQLPVNGCLGH
Trigger: ATGGCCCAGGCAACCATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTCTTCTTGGACTGCCTTTATACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR CCA 72 bp AACAAGTATATGACTGCCAACAGGCATCTCCAAAGATaGCAGCAGCCATGGTCATGCACAAGACAAAGGAGC +
Preference number: 3 (lower is better)
Translates to: NKYMTANRHLQR*QQPWSCTRQRS
Trigger: GCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CAA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTGGAAGTCAAGGACACTaGTGGAGTGTTTTCTTCAAT +
Preference number: 3 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPGSQGH*WSVFFN
Trigger: ATTGAAGAAAACACTCCACAAGTGTCCTTGACTTCC...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR TCA 72 bp ATGGAGCAAGTGTCCTCTGCACATCTTCACACCCAATaGGGAAGTCAAGGACACTTGTGGAGTGTTTTCTTC +
Preference number: 3 (lower is better)
Translates to: MEQVSSAHLHTQ*GSQGHLWSVFF
Trigger: GAAGAAAACACTCCACAAGTGTCCTTGACTTCCTCATTGGGTGTGAAGATGTGCAGAGGACACTTGCTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR GCA 72 bp CCTGAGGCTGAAGCTATCTTATGGTTTATCCTATTGTaGTCTACGGAGCCAGTCCAGATGTCAAATTGTGTG +
Preference number: 3 (lower is better)
Translates to: PEAEAILWFILL*STEPVQMSNCV
Trigger: CACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACCATAAGATAGCTTCAGCCTCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 72 bp ATTTGTGTGACTGATTCCCGGATATCCTTTAGGAACTaGATCGCCACTCGCTTCCGAGTATGTACTAACGTA +
Preference number: 3 (lower is better)
Translates to: ICVTDSRISFRN*IATRFRVCTNV
Trigger: TACGTTAGTACATACTCGGAAGCGAGTGGCGATCCAGTTCCTAAAGGATATCCGGGAATCAGTCACACAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
3UTR-3UTR CAA 90 bp ATTGCTTTTGAAGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGAGCAGAGACACCCTCTaGCTATCTCACACTTTCCCT +
Preference number: 3 (lower is better)
Translates to: IAFEGLLLQLGKNIEMVGSRDTL*LSHTFP
Trigger: AGGGAAAGTGTGAGATAGCAAGAGGGTGTCTCTGCT...CCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCTTCAAAAGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CCA 72 bp TTAAGTCACACTAAGGTTCCTAATCATGAATTAAAATaGCTGCAGCGGGTCCCTCTGAAAAACACCAGCACC +
Preference number: 3 (lower is better)
Translates to: LSHTKVPNHELK*LQRVPLKNTST
Trigger: GGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGCCATTTTAATTCATGATTAGGAACCTTAGTGTGACTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR GCA 72 bp TCTAGGGTAACATTAATAACCAGGACAGACTCACTATaGAGTGGGATCCTTCAGGGTCTTCAAACTAAAAGC +
Preference number: 3 (lower is better)
Translates to: SRVTLITRTDSL*SGILQGLQTKS
Trigger: GCTTTTAGTTTGAAGACCCTGAAGGATCCCACTGCATAGTGAGTCTGTCCTGGTTATTAATGTTACCCTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR GCA 72 bp TTACCCTACAGTAATAAGAACAAACAAGTATATGACTaGCAACAGGCATCTCCAAAGATGGCAGCAGCCATG +
Preference number: 3 (lower is better)
Translates to: LPYSNKNKQVYD*QQASPKMAAAM
Trigger: CATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGTTCTTATTACTGTAGGGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR-3UTR CAA 90 bp GAAAGCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAGCAGAGACACCCTCTaGCTATCTCACACTTTCCCT +
Preference number: 3 (lower is better)
Translates to: ESPRFSEKHVHFLPYSNKSRDTL*LSHTFP
Trigger: AGGGAAAGTGTGAGATAGCAAGAGGGTGTCTCTGCT...CTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGCTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp CACGGCTGGCTGTTCTGTCCTGTTTCCACCGCACAGACTGTCAATGGTGGCTCCGATGCCACCAGGCCGTaGGCCAGCTATGCTTGGAGA +
Preference number: 4 (lower is better)
Translates to: HGWLFCPVSTAQTVNGGSDATRP*ASYAWR
Trigger: TCTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATC...GGAGCCACCATTGACAGTCTGTGCGGTGGAAACAGGACAGAACAGCCAGCCGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAACCCAACAGGCTGCAATaGTGCCACCAGGCCGTGAGC +
Preference number: 4 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQPNRLQ*CHQAVS
Trigger: GCTCACGGCCTGGTGGCATCATTGCAGCCTGTTGGG...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp TTCCTGCCTGATGGCCAGAACACCCCACTGAGGCAGCAGAGACACCCTCTTGCTCCGTTCTCACCGAAGTaGATCAAGGCGGCCCAACAG +
Preference number: 4 (lower is better)
Translates to: FLPDGQNTPLRQQRHPLAPFSPK*IKAAQQ
Trigger: CTGTTGGGCCGCCTTGATGCACTTCGGTGAGAACGG...AGCAAGAGGGTGTCTCTGCTGCCTCAGTGGGGTGTTCTGGCCATCAGGCAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp TTCCTGCCTGATGGCCAGAACACCCCACTGAGGCAGCAGAGACACCCTCTTGCTAGCTGCTTTGTCGAATaGAGCATGGGCACTCTCGGG +
Preference number: 4 (lower is better)
Translates to: FLPDGQNTPLRQQRHPLASCFVE*SMGTLG
Trigger: CCCGAGAGTGCCCATGCTGCATTCGACAAAGCAGCT...AGCAAGAGGGTGTCTCTGCTGCCTCAGTGGGGTGTTCTGGCCATCAGGCAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTGGCGGCCCAACAGGCTaGAATGATGCCACCAGGCCG +
Preference number: 4 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPGGPTG*NDATRP
Trigger: CGGCCTGGTGGCATCATTGCAGCCTGTTGGGCCGCC...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCGATGCCACCAGGCCGTaGGCCAGCTATGCTTGGAGA +
Preference number: 4 (lower is better)
Translates to: GCFSILATCKPERRPRGVDATRP*ASYAWR
Trigger: TCTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATC...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp AACACGGTACATAACTGCTTCCTGCCTGATGGCCAGAACACCCCACTGAGGCAGTGGAGCTGTACTCCTTaGGTCTCTCCAGAACCTCAG +
Preference number: 4 (lower is better)
Translates to: NTVHNCFLPDGQNTPLRQWSCTP*VSPEPQ
Trigger: CTGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCA...CTGCCTCAGTGGGGTGTTCTGGCCATCAGGCAGGAAGCAGTTATGTACCGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAATTGTACACAGCTCCTaGGGCTTTCCCTTCTTGCCA +
Preference number: 4 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQIVHSS*GFPFLP
Trigger: TGGCAAGAAGGGAAAGCCTCAGGAGCTGTGTACAAT...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAGTGGATTGCTCCACGTaGATTCTCCATAAGCCTGCA +
Preference number: 4 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQVDCST*ILHKPA
Trigger: TGCAGGCTTATGGAGAATTCACGTGGAGCAATCCAC...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp TTCCTGCCTGATGGCCAGAACACCCCACTGAGGCAGCAGAGACACCCTCTTGCTGATGTTTTCCAGTTCTaGCTTCAGGAAGCGAGCAGT +
Preference number: 4 (lower is better)
Translates to: FLPDGQNTPLRQQRHPLADVFQF*LQEASS
Trigger: ACTGCTCGCTTCCTGAAGTCAGAACTGGAAAACATC...AGCAAGAGGGTGTCTCTGCTGCCTCAGTGGGGTGTTCTGGCCATCAGGCAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGACCAGAACCTCAGCTGTaGCCATACCCTGAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGPEPQL*PYPEQA
Trigger: TGCCTGCTCAGGGTATGGGCACAGCTGAGGTTCTGG...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp TGGGAAATTGGCCAGGGATTGGTCCTGTCCCTGTATAGCCCTGGGCAATCAGTCGAGGCTTTCCCTTCTTaGCAGGAACCATCCATGGAG +
Preference number: 4 (lower is better)
Translates to: WEIGQGLVLSLYSPGQSVEAFPS*QEPSME
Trigger: CTCCATGGATGGTTCCTGGCAAGAAGGGAAAGCCTC...GACTGATTGCCCAGGGCTATACAGGGACAGGACCAATCCCTGGCCAATTTCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAGGGAAGATATCTGGATaGAGTGGATTGCTCCACGTG +
Preference number: 4 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQGKISG*SGLLHV
Trigger: CACGTGGAGCAATCCACTGCATCCAGATATCTTCCC...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp GGGGCAGGAAGAACACACACTGATGGAGCAAGTGTCCTCTGCACATCTTCACACTGCAGGCCATCAGGATaGTTTCCGTTCCCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: GAGRTHTDGASVLCTSSHCRPSG*FPFPQK
Trigger: CTTCTGGGGGAACGGAAAGCATCCTGATGGCCTGCA...GTGTGAAGATGTGCAGAGGACACTTGCTCCATCAGTGTGTGTTCTTCCTGCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGGGCGGCCCAACAGGCTaGAATGATGCCACCAGGCCG +
Preference number: 4 (lower is better)
Translates to: NKQVYDCQQASPKMAAAMGGPTG*NDATRP
Trigger: CGGCCTGGTGGCATCATTGCAGCCTGTTGGGCCGCC...CATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTGGACACTCCACGCAATaGGCTGCCAGGGCTCATATT +
Preference number: 4 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPGHSTQ*AARAHI
Trigger: AATATGAGCCCTGGCAGCTCATTGCGTGGAGTGTCC...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp CACAAGGGTCAAAGTTCAGCGGGGCTTTGGAGAACCGTTCATCTGGTTGCCCTGAATCTGGTCCCCCATTaGAGAGGGAACAAGTCATCC +
Preference number: 4 (lower is better)
Translates to: HKGQSSAGLWRTVHLVALNLVPH*RGNKSS
Trigger: GGATGACTTGTTCCCTCTTCAATGGGGGACCAGATT...CAGGGCAACCAGATGAACGGTTCTCCAAAGCCCCGCTGAACTTTGACCCTTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp AGCCTCATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCCCAACAGGCTGCAATaGTGCCACCAGGCCGTGAGC +
Preference number: 4 (lower is better)
Translates to: SLIMHCRAYRREVDIYTCPNRLQ*CHQAVS
Trigger: GCTCACGGCCTGGTGGCATCATTGCAGCCTGTTGGG...GCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTATGAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCGAGGCTTTCCCTTCTTaGCAGGAACCATCCATGGAG +
Preference number: 4 (lower is better)
Translates to: GCFSILATCKPERRPRGVEAFPS*QEPSME
Trigger: CTCCATGGATGGTTCCTGGCAAGAAGGGAAAGCCTC...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGAAGCTGCTTTGTCGAATaGAGCATGGGCACTCTCGGG +
Preference number: 4 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGSCFVE*SMGTLG
Trigger: CCCGAGAGTGCCCATGCTGCATTCGACAAAGCAGCT...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGCCGTTCTCACCGAAGTaGATCAAGGCGGCCCAACAG +
Preference number: 4 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLPFSPK*IKAAQQ
Trigger: CTGTTGGGCCGCCTTGATGCACTTCGGTGAGAACGG...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AACACGGTACATAACTGCTTCCTGCCTGATGGCCAGAACACCCCACTGAGGCAGCTTCCTGTCAATGGTTaGCTGGGCCATGCCATAGAT +
Preference number: 4 (lower is better)
Translates to: NTVHNCFLPDGQNTPLRQLPVNG*LGHAID
Trigger: ATCTATGGCATGGCCCAGGCAACCATTGACAGGAAG...CTGCCTCAGTGGGGTGTTCTGGCCATCAGGCAGGAAGCAGTTATGTACCGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR CCA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAATCCAGGGAAGATATCTaGATGCAGTGGATTGCTCCA +
Preference number: 4 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQSREDI*MQWIAP
Trigger: TGGAGCAATCCACTGCATCCAGATATCTTCCCTGGA...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGAGGGCCATGCCATAGATaGCACCCATTCCTGTGGTCT +
Preference number: 4 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGGPCHR*HPFLWS
Trigger: AGACCACAGGAATGGGTGCCATCTATGGCATGGCCC...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR CCA 90 bp AGCTGTAATGACAGTGATCCTGAGGACAAGAGGCATCTCCTGAAGCAGAGGCTGCCAGCTTCCTGTCAATaGTTGCCTGGGCCATGCCAT +
Preference number: 4 (lower is better)
Translates to: SCNDSDPEDKRHLLKQRLPASCQ*LPGPCH
Trigger: ATGGCATGGCCCAGGCAACCATTGACAGGAAGCTGG...CAGCCTCTGCTTCAGGAGATGCCTCTTGTCCTCAGGATCACTGTCATTACAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR TCA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGGGACACTCCACGCAATaGGCTGCCAGGGCTCATATT +
Preference number: 4 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLGHSTQ*AARAHI
Trigger: AATATGAGCCCTGGCAGCTCATTGCGTGGAGTGTCC...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp AGCTGTAATGACAGTGATCCTGAGGACAAGAGGCATCTCCTGAAGCAGAGGCTGTGGAGCTGTACTCCTTaGGTCTCTCCAGAACCTCAG +
Preference number: 4 (lower is better)
Translates to: SCNDSDPEDKRHLLKQRLWSCTP*VSPEPQ
Trigger: CTGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCA...CAGCCTCTGCTTCAGGAGATGCCTCTTGTCCTCAGGATCACTGTCATTACAGCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GGGGCAGGAAGAACACACACTGATGGAGCAAGTGTCCTCTGCACATCTTCACACGGATCCATCACACCATaGGGAAACTGTGGGGTAGAA +
Preference number: 4 (lower is better)
Translates to: GAGRTHTDGASVLCTSSHGSITP*GNCGVE
Trigger: TTCTACCCCACAGTTTCCTCATGGTGTGATGGATCC...GTGTGAAGATGTGCAGAGGACACTTGCTCCATCAGTGTGTGTTCTTCCTGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGACTCCACGCAATGAGCTaGCAGGGCTCATATTTGGTG +
Preference number: 4 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGLHAMS*QGSYLV
Trigger: CACCAAATATGAGCCCTGGCAGCTCATTGCGTGGAG...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AGGCCAGTAGTCTGGCCGACGTGTGCTTGGAAAAGTAAAGCAAGCTGTAATGACTGCAGGCCATCAGGATaGTTTCCGTTCCCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: RPVVWPTCAWKSKASCNDCRPSG*FPFPQK
Trigger: CTTCTGGGGGAACGGAAAGCATCCTGATGGCCTGCA...GTCATTACAGCTTGCTTTACTTTTCCAAGCACACGTCGGCCAGACTACTGGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp TGGGAAATTGGCCAGGGATTGGTCCTGTCCCTGTATAGCCCTGGGCAATCAGTCCTCCAGTGGGTACCCTaGTTTCTCCATGAAGACAAT +
Preference number: 4 (lower is better)
Translates to: WEIGQGLVLSLYSPGQSVLQWVP*FLHEDN
Trigger: ATTGTCTTCATGGAGAAAGCAGGGTACCCACTGGAG...GACTGATTGCCCAGGGCTATACAGGGACAGGACCAATCCCTGGCCAATTTCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AACACGGTACATAACTGCTTCCTGCCTGATGGCCAGAACACCCCACTGAGGCAGGAGTATCTGCTGAAATaGTGGTCACACCTTTCACCC +
Preference number: 4 (lower is better)
Translates to: NTVHNCFLPDGQNTPLRQEYLLK*WSHLSP
Trigger: GGGTGAAAGGTGTGACCAGCATTTCAGCAGATACTC...CTGCCTCAGTGGGGTGTTCTGGCCATCAGGCAGGAAGCAGTTATGTACCGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCAGCTATGCTTGGAGATaGGTAGACACCACCTTGCCA +
Preference number: 4 (lower is better)
Translates to: GCFSILATCKPERRPRGVSYAWR*VDTTLP
Trigger: TGGCAAGGTGGTGTCTACGCATCTCCAAGCATAGCT...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp CCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTCTGTTCCTGGTTGCCTGGGCCATaGCATAGATGGCACCCATTC +
Preference number: 4 (lower is better)
Translates to: PIVLYGASPDVKLCAVCSWLPGP*HRWHPF
Trigger: GAATGGGTGCCATCTATGGCATGGCCCAGGCAACCA...GGAACAGACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR CCA 90 bp GGGGCAGGAAGAACACACACTGATGGAGCAAGTGTCCTCTGCACATCTTCACACACATCCACAGGAATCTaGTCCCCCATTGAAGAGGGA +
Preference number: 4 (lower is better)
Translates to: GAGRTHTDGASVLCTSSHTSTGI*SPIEEG
Trigger: TCCCTCTTCAATGGGGGACCAGATTCCTGTGGATGT...GTGTGAAGATGTGCAGAGGACACTTGCTCCATCAGTGTGTGTTCTTCCTGCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp TGGGAAATTGGCCAGGGATTGGTCCTGTCCCTGTATAGCCCTGGGCAATCAGTCGGGAGCCACAATTTCTaGAGTTTTGATCCCCTTCTC +
Preference number: 4 (lower is better)
Translates to: WEIGQGLVLSLYSPGQSVGSHNF*SFDPLL
Trigger: GAGAAGGGGATCAAAACTCCAGAAATTGTGGCTCCC...GACTGATTGCCCAGGGCTATACAGGGACAGGACCAATCCCTGGCCAATTTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCCACCCGGAAATCAAATaGTTTCTCCAGTGGGTACCC +
Preference number: 4 (lower is better)
Translates to: GCFSILATCKPERRPRGVHPEIK*FLQWVP
Trigger: GGGTACCCACTGGAGAAACCATTTGATTTCCGGGTG...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGCCAGCTTCCTGTCAATaGTTGCCTGGGCCATGCCAT +
Preference number: 4 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLPASCQ*LPGPCH
Trigger: ATGGCATGGCCCAGGCAACCATTGACAGGAAGCTGG...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR TCA 90 bp AGCTGTAATGACAGTGATCCTGAGGACAAGAGGCATCTCCTGAAGCAGAGGCTGGTGGATTGCTCCACGTaGATTCTCCATAAGCCTGCA +
Preference number: 4 (lower is better)
Translates to: SCNDSDPEDKRHLLKQRLVDCST*ILHKPA
Trigger: TGCAGGCTTATGGAGAATTCACGTGGAGCAATCCAC...CAGCCTCTGCTTCAGGAGATGCCTCTTGTCCTCAGGATCACTGTCATTACAGCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGAGGATCCATCACACCATaGGGAAACTGTGGGGTAGAA +
Preference number: 4 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGGSITP*GNCGVE
Trigger: TTCTACCCCACAGTTTCCTCATGGTGTGATGGATCC...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGCTCCACGCAATGAGCTaGCAGGGCTCATATTTGGTG +
Preference number: 4 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLLHAMS*QGSYLV
Trigger: CACCAAATATGAGCCCTGGCAGCTCATTGCGTGGAG...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp GTGATCTGTCCCAAGTTCTCTCCTATAAGCAGACACACCTCAAAGAGTGGTCTACCAGAACCTCAGCTGTaGCCATACCCTGAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: VICPKFSPISRHTSKSGLPEPQL*PYPEQA
Trigger: TGCCTGCTCAGGGTATGGGCACAGCTGAGGTTCTGG...TAGACCACTCTTTGAGGTGTGTCTGCTTATAGGAGAGAACTTGGGACAGATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTGCTCTCTTCATTGCCTaGACATCCACCTCCATGTTC +
Preference number: 4 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPALFIA*TSTSMF
Trigger: GAACATGGAGGTGGATGTGCAGGCAATGAAGAGAGC...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGAAGCTATGCTTGGAGATaGGTAGACACCACCTTGCCA +
Preference number: 4 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGSYAWR*VDTTLP
Trigger: TGGCAAGGTGGTGTCTACGCATCTCCAAGCATAGCT...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AGCTGTAATGACAGTGATCCTGAGGACAAGAGGCATCTCCTGAAGCAGAGGCTGAGCTATGCTTGGAGATaGGTAGACACCACCTTGCCA +
Preference number: 4 (lower is better)
Translates to: SCNDSDPEDKRHLLKQRLSYAWR*VDTTLP
Trigger: TGGCAAGGTGGTGTCTACGCATCTCCAAGCATAGCT...CAGCCTCTGCTTCAGGAGATGCCTCTTGTCCTCAGGATCACTGTCATTACAGCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp GTGATCTGTCCCAAGTTCTCTCCTATAAGCAGACACACCTCAAAGAGTGGTCTACCGTTCTCACCGAAGTaGATCAAGGCGGCCCAACAG +
Preference number: 4 (lower is better)
Translates to: VICPKFSPISRHTSKSGLPFSPK*IKAAQQ
Trigger: CTGTTGGGCCGCCTTGATGCACTTCGGTGAGAACGG...TAGACCACTCTTTGAGGTGTGTCTGCTTATAGGAGAGAACTTGGGACAGATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CAA 72 bp CTAAAAGGGAGAAGCAAATGGGAAATTGGCCAGGGATaGGTCCTGTCCCTGTATAGCCCTGGGCAATCAGTC +
Preference number: 4 (lower is better)
Translates to: LKGRSKWEIGQG*VLSLYSPGQSV
Trigger: GACTGATTGCCCAGGGCTATACAGGGACAGGACCAATCCCTGGCCAATTTCCCATTTGCTTCTCCCTTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGAGATGTTTTCCAGTTCTaGCTTCAGGAAGCGAGCAGT +
Preference number: 4 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGDVFQF*LQEASS
Trigger: ACTGCTCGCTTCCTGAAGTCAGAACTGGAAAACATC...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GGGGCAGGAAGAACACACACTGATGGAGCAAGTGTCCTCTGCACATCTTCACACTCCCAGAGCAATAACTaGCAATTGAGGATCACCGAA +
Preference number: 4 (lower is better)
Translates to: GAGRTHTDGASVLCTSSHSQSNN*QLRITE
Trigger: TTCGGTGATCCTCAATTGTCAGTTATTGCTCTGGGA...GTGTGAAGATGTGCAGAGGACACTTGCTCCATCAGTGTGTGTTCTTCCTGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGGCTCTCTTCATTGCCTaGACATCCACCTCCATGTTC +
Preference number: 4 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLALFIA*TSTSMF
Trigger: GAACATGGAGGTGGATGTGCAGGCAATGAAGAGAGC...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AAGACAAAGGAGCACTTCAAACCCTGCCAAGGGAATATACTCCAGTTATTTAAAGGCGGCCCAACAGGCTaGAATGATGCCACCAGGCCG +
Preference number: 4 (lower is better)
Translates to: KTKEHFKPCQGNILQLFKGGPTG*NDATRP
Trigger: CGGCCTGGTGGCATCATTGCAGCCTGTTGGGCCGCC...TTTAAATAACTGGAGTATATTCCCTTGGCAGGGTTTGAAGTGCTCCTTTGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AGCCTCATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCTGGTTGCCTGGGCCATaGCATAGATGGCACCCATTC +
Preference number: 4 (lower is better)
Translates to: SLIMHCRAYRREVDIYTCWLPGP*HRWHPF
Trigger: GAATGGGTGCCATCTATGGCATGGCCCAGGCAACCA...GCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTATGAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR CCA 90 bp GGGGCAGGAAGAACACACACTGATGGAGCAAGTGTCCTCTGCACATCTTCACACGATATCTGGATGCAGTaGATTGCTCCACGTGAATTC +
Preference number: 4 (lower is better)
Translates to: GAGRTHTDGASVLCTSSHDIWMQ*IAPREF
Trigger: GAATTCACGTGGAGCAATCCACTGCATCCAGATATC...GTGTGAAGATGTGCAGAGGACACTTGCTCCATCAGTGTGTGTTCTTCCTGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp AGCTGTAATGACAGTGATCCTGAGGACAAGAGGCATCTCCTGAAGCAGAGGCTGGGGAGCCACAATTTCTaGAGTTTTGATCCCCTTCTC +
Preference number: 4 (lower is better)
Translates to: SCNDSDPEDKRHLLKQRLGSHNF*SFDPLL
Trigger: GAGAAGGGGATCAAAACTCCAGAAATTGTGGCTCCC...CAGCCTCTGCTTCAGGAGATGCCTCTTGTCCTCAGGATCACTGTCATTACAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGAACCATGAGGAAACTGTaGGGTAGAACAGACCAGCAT +
Preference number: 4 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGTMRKL*GRTDQH
Trigger: ATGCTGGTCTGTTCTACCCCACAGTTTCCTCATGGT...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp TGGGAAATTGGCCAGGGATTGGTCCTGTCCCTGTATAGCCCTGGGCAATCAGTCAGCATCCACATGGAGTaGGATTTTATATCTGACAGC +
Preference number: 4 (lower is better)
Translates to: WEIGQGLVLSLYSPGQSVSIHME*DFISDS
Trigger: GCTGTCAGATATAAAATCCCACTCCATGTGGATGCT...GACTGATTGCCCAGGGCTATACAGGGACAGGACCAATCCCTGGCCAATTTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp GGTTTATCCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTGGGCCATGCCATAGATaGCACCCATTCCTGTGGTCT +
Preference number: 4 (lower is better)
Translates to: GLSYCALRSQSRCQIVCSGPCHR*HPFLWS
Trigger: AGACCACAGGAATGGGTGCCATCTATGGCATGGCCC...ACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR TCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGAGTGGGATTTTATATCTaGCAGCCAACTTGGCCACTT +
Preference number: 4 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGVGFYI*QPTWPL
Trigger: AAGTGGCCAAGTTGGCTGTCAGATATAAAATCCCAC...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp GTGATCTGTCCCAAGTTCTCTCCTATAAGCAGACACACCTCAAAGAGTGGTCTAGAGGCTTTCCCTTCTTaGCAGGAACCATCCATGGAG +
Preference number: 4 (lower is better)
Translates to: VICPKFSPISRHTSKSGLEAFPS*QEPSME
Trigger: CTCCATGGATGGTTCCTGGCAAGAAGGGAAAGCCTC...TAGACCACTCTTTGAGGTGTGTCTGCTTATAGGAGAGAACTTGGGACAGATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp AGCTGTAATGACAGTGATCCTGAGGACAAGAGGCATCTCCTGAAGCAGAGGCTGGATATCTGGATGCAGTaGATTGCTCCACGTGAATTC +
Preference number: 4 (lower is better)
Translates to: SCNDSDPEDKRHLLKQRLDIWMQ*IAPREF
Trigger: GAATTCACGTGGAGCAATCCACTGCATCCAGATATC...CAGCCTCTGCTTCAGGAGATGCCTCTTGTCCTCAGGATCACTGTCATTACAGCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCAGCATCCACATGGAGTaGGATTTTATATCTGACAGC +
Preference number: 4 (lower is better)
Translates to: GCFSILATCKPERRPRGVSIHME*DFISDS
Trigger: GCTGTCAGATATAAAATCCCACTCCATGTGGATGCT...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTAAATGGTTTCTCCAGTaGGTACCCTGCTTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPKWFLQ*VPCFLH
Trigger: ATGGAGAAAGCAGGGTACCCACTGGAGAAACCATTT...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CAA 72 bp CCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATaGTGTGCAGTCTGTTCCAAACGCCAAGAACCTTCT +
Preference number: 4 (lower is better)
Translates to: PIVLYGASPDVK*CAVCSKRQEPS
Trigger: AGAAGGTTCTTGGCGTTTGGAACAGACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp AGGCCAGTAGTCTGGCCGACGTGTGCTTGGAAAAGTAAAGCAAGCTGTAATGACGGAATGGCATGTTCTTaGCAAGATCCTTCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: RPVVWPTCAWKSKASCNDGMACS*QDPSWL
Trigger: AAGCCAAGAAGGATCTTGTCAAGAACATGCCATTCC...GTCATTACAGCTTGCTTTACTTTTCCAAGCACACGTCGGCCAGACTACTGGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GTGATCTGTCCCAAGTTCTCTCCTATAAGCAGACACACCTCAAAGAGTGGTCTAATTGTACACAGCTCCTaGGGCTTTCCCTTCTTGCCA +
Preference number: 4 (lower is better)
Translates to: VICPKFSPISRHTSKSGLIVHSS*GFPFLP
Trigger: TGGCAAGAAGGGAAAGCCTCAGGAGCTGTGTACAAT...TAGACCACTCTTTGAGGTGTGTCTGCTTATAGGAGAGAACTTGGGACAGATCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp CCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTCTGTTCCCAATTTCTGGAGTTTTaGTCCCCTTCTCTAACGCCA +
Preference number: 4 (lower is better)
Translates to: PIVLYGASPDVKLCAVCSQFLEF*SPSLTP
Trigger: TGGCGTTAGAGAAGGGGATCAAAACTCCAGAAATTG...GGAACAGACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGGTGGGATTTTATATCTaGCAGCCAACTTGGCCACTT +
Preference number: 4 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLVGFYI*QPTWPL
Trigger: AAGTGGCCAAGTTGGCTGTCAGATATAAAATCCCAC...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp CCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTCTGTTCCGTGGGATTTTATATCTaGCAGCCAACTTGGCCACTT +
Preference number: 4 (lower is better)
Translates to: PIVLYGASPDVKLCAVCSVGFYI*QPTWPL
Trigger: AAGTGGCCAAGTTGGCTGTCAGATATAAAATCCCAC...GGAACAGACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp TTCTTACCCTACAGTAATAAGAACAAACAAGTATATGACTGCCAACAGGCATCTCCCAACAGGCTGCAATaGTGCCACCAGGCCGTGAGC +
Preference number: 4 (lower is better)
Translates to: FLPYSNKNKQVYDCQQASPNRLQ*CHQAVS
Trigger: GCTCACGGCCTGGTGGCATCATTGCAGCCTGTTGGG...AGATGCCTGTTGGCAGTCATATACTTGTTTGTTCTTATTACTGTAGGGTAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp GGTTTATCCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTGGGAAGATATCTGGATaGAGTGGATTGCTCCACGTG +
Preference number: 4 (lower is better)
Translates to: GLSYCALRSQSRCQIVCSGKISG*SGLLHV
Trigger: CACGTGGAGCAATCCACTGCATCCAGATATCTTCCC...ACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp GGTTTATCCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTGCTCTCTTCATTGCCTaGACATCCACCTCCATGTTC +
Preference number: 4 (lower is better)
Translates to: GLSYCALRSQSRCQIVCSALFIA*TSTSMF
Trigger: GAACATGGAGGTGGATGTGCAGGCAATGAAGAGAGC...ACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp ATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCCTGTGCTTCCTGTCAATGGTTaGCTGGGCCATGCCATAGAT +
Preference number: 4 (lower is better)
Translates to: IMHCRAYRREVDIYTCPVLPVNG*LGHAID
Trigger: ATCTATGGCATGGCCCAGGCAACCATTGACAGGAAG...CACAGGGCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR GCA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGGACGGAGGATATTTCTaGAACCAGCTTCCTGTCAAT +
Preference number: 4 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLDGGYF*NQLPVN
Trigger: ATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTC...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR CCA 90 bp AGCTGTAATGACAGTGATCCTGAGGACAAGAGGCATCTCCTGAAGCAGAGGCTGCATAAACTCTCTGGCTaGAAGATAAGCTCATACACC +
Preference number: 4 (lower is better)
Translates to: SCNDSDPEDKRHLLKQRLHKLSG*KISSYT
Trigger: GGTGTATGAGCTTATCTTCCAGCCAGAGAGTTTATG...CAGCCTCTGCTTCAGGAGATGCCTCTTGTCCTCAGGATCACTGTCATTACAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp CATGAAGGCTTAAGGCAATGTCCAAGGGGAAGACTACTGCCCACATGTGCAGGACATAAACTCTCTGGCTaGAAGATAAGCTCATACACC +
Preference number: 4 (lower is better)
Translates to: HEGLRQCPRGRLLPTCAGHKLSG*KISSYT
Trigger: GGTGTATGAGCTTATCTTCCAGCCAGAGAGTTTATG...TCCTGCACATGTGGGCAGTAGTCTTCCCCTTGGACATTGCCTTAAGCCTTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp GGTTTATCCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTACATCCACAGGAATCTaGTCCCCCATTGAAGAGGGA +
Preference number: 4 (lower is better)
Translates to: GLSYCALRSQSRCQIVCSTSTGI*SPIEEG
Trigger: TCCCTCTTCAATGGGGGACCAGATTCCTGTGGATGT...ACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp ACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGGGGGAGCCACAATTTCTaGAGTTTTGATCCCCTTCTC +
Preference number: 4 (lower is better)
Translates to: TNKYMTANRHLQRWQQPWGSHNF*SFDPLL
Trigger: GAGAAGGGGATCAAAACTCCAGAAATTGTGGCTCCC...CCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp AAGGCAGTCCAAGAAGACGGAGGATATTTCTGCAACCAGCTTCCTGTCAATGGTCAATTTCTGGAGTTTTaGTCCCCTTCTCTAACGCCA +
Preference number: 4 (lower is better)
Translates to: KAVQEDGGYFCNQLPVNGQFLEF*SPSLTP
Trigger: TGGCGTTAGAGAAGGGGATCAAAACTCCAGAAATTG...ACCATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTCTTCTTGGACTGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GGTTTATCCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTGATGTTTTCCAGTTCTaGCTTCAGGAAGCGAGCAGT +
Preference number: 4 (lower is better)
Translates to: GLSYCALRSQSRCQIVCSDVFQF*LQEASS
Trigger: ACTGCTCGCTTCCTGAAGTCAGAACTGGAAAACATC...ACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCCCAGAACCTCAGCTGTaGCCATACCCTGAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTPEPQL*PYPEQA
Trigger: TGCCTGCTCAGGGTATGGGCACAGCTGAGGTTCTGG...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp ATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCCTGTGCTCCAGTGGGTACCCTaGTTTCTCCATGAAGACAAT +
Preference number: 4 (lower is better)
Translates to: IMHCRAYRREVDIYTCPVLQWVP*FLHEDN
Trigger: ATTGTCTTCATGGAGAAAGCAGGGTACCCACTGGAG...CACAGGGCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AGCCTCATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCTCCAGTGGGTACCCTaGTTTCTCCATGAAGACAAT +
Preference number: 4 (lower is better)
Translates to: SLIMHCRAYRREVDIYTCLQWVP*FLHEDN
Trigger: ATTGTCTTCATGGAGAAAGCAGGGTACCCACTGGAG...GCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTATGAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp AGGCCAGTAGTCTGGCCGACGTGTGCTTGGAAAAGTAAAGCAAGCTGTAATGACAGCATCCACATGGAGTaGGATTTTATATCTGACAGC +
Preference number: 4 (lower is better)
Translates to: RPVVWPTCAWKSKASCNDSIHME*DFISDS
Trigger: GCTGTCAGATATAAAATCCCACTCCATGTGGATGCT...GTCATTACAGCTTGCTTTACTTTTCCAAGCACACGTCGGCCAGACTACTGGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp ACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGGAAATGGTTTCTCCAGTaGGTACCCTGCTTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: TNKYMTANRHLQRWQQPWKWFLQ*VPCFLH
Trigger: ATGGAGAAAGCAGGGTACCCACTGGAGAAACCATTT...CCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp AAGGCAGTCCAAGAAGACGGAGGATATTTCTGCAACCAGCTTCCTGTCAATGGTAAATGGTTTCTCCAGTaGGTACCCTGCTTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: KAVQEDGGYFCNQLPVNGKWFLQ*VPCFLH
Trigger: ATGGAGAAAGCAGGGTACCCACTGGAGAAACCATTT...ACCATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTCTTCTTGGACTGCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp AGCCTCATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCTATCTGCTGAAATGCTaGTCACACCTTTCACCCGGA +
Preference number: 4 (lower is better)
Translates to: SLIMHCRAYRREVDIYTCYLLKC*SHLSPG
Trigger: TCCGGGTGAAAGGTGTGACCAGCATTTCAGCAGATA...GCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTATGAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCGGACACTCCACGCAATaGGCTGCCAGGGCTCATATT +
Preference number: 4 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTGHSTQ*AARAHI
Trigger: AATATGAGCCCTGGCAGCTCATTGCGTGGAGTGTCC...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp AGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACATTAGAGACATTGTACACAGCTCCTaGGGCTTTCCCTTCTTGCCA +
Preference number: 4 (lower is better)
Translates to: RVIAAVRKEHRDGRDIRDIVHSS*GFPFLP
Trigger: TGGCAAGAAGGGAAAGCCTCAGGAGCTGTGTACAAT...GTCTCTAATGTCCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GAAAGCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGGATGCCACCAGGCCGTaGGCCAGCTATGCTTGGAGA +
Preference number: 4 (lower is better)
Translates to: ESPRFSEKHVHFLPYSNKDATRP*ASYAWR
Trigger: TCTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATC...CTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGCTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp ATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCCTGTGTCCCAGAGCAATAACTaGCAATTGAGGATCACCGAA +
Preference number: 4 (lower is better)
Translates to: IMHCRAYRREVDIYTCPVSQSNN*QLRITE
Trigger: TTCGGTGATCCTCAATTGTCAGTTATTGCTCTGGGA...CACAGGGCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCTGCAGGCCATCAGGATaGTTTCCGTTCCCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTCRPSG*FPFPQK
Trigger: CTTCTGGGGGAACGGAAAGCATCCTGATGGCCTGCA...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AAGACAAAGGAGCACTTCAAACCCTGCCAAGGGAATATACTCCAGTTATTTAAAAGCTGCTTTGTCGAATaGAGCATGGGCACTCTCGGG +
Preference number: 4 (lower is better)
Translates to: KTKEHFKPCQGNILQLFKSCFVE*SMGTLG
Trigger: CCCGAGAGTGCCCATGCTGCATTCGACAAAGCAGCT...TTTAAATAACTGGAGTATATTCCCTTGGCAGGGTTTGAAGTGCTCCTTTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp AGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACATTAGAGACCACCCGGAAATCAAATaGTTTCTCCAGTGGGTACCC +
Preference number: 4 (lower is better)
Translates to: RVIAAVRKEHRDGRDIRDHPEIK*FLQWVP
Trigger: GGGTACCCACTGGAGAAACCATTTGATTTCCGGGTG...GTCTCTAATGTCCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACATTAGAGACGAGTATCTGCTGAAATaGTGGTCACACCTTTCACCC +
Preference number: 4 (lower is better)
Translates to: RVIAAVRKEHRDGRDIRDEYLLK*WSHLSP
Trigger: GGGTGAAAGGTGTGACCAGCATTTCAGCAGATACTC...GTCTCTAATGTCCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp GTGATCTGTCCCAAGTTCTCTCCTATAAGCAGACACACCTCAAAGAGTGGTCTACATAAACTCTCTGGCTaGAAGATAAGCTCATACACC +
Preference number: 4 (lower is better)
Translates to: VICPKFSPISRHTSKSGLHKLSG*KISSYT
Trigger: GGTGTATGAGCTTATCTTCCAGCCAGAGAGTTTATG...TAGACCACTCTTTGAGGTGTGTCTGCTTATAGGAGAGAACTTGGGACAGATCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CAA 72 bp AGTCCTGAGGCTGAAGCTATCTTATGGTTTATCCTATaGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGT +
Preference number: 4 (lower is better)
Translates to: SPEAEAILWFIL*CSTEPVQMSNC
Trigger: ACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACCATAAGATAGCTTCAGCCTCAGGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp AGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACATTAGAGACGGAATGGCATGTTCTTaGCAAGATCCTTCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: RVIAAVRKEHRDGRDIRDGMACS*QDPSWL
Trigger: AAGCCAAGAAGGATCTTGTCAAGAACATGCCATTCC...GTCTCTAATGTCCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp ATTGCTTTTGAAGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGGAGTATCTGCTGAAATaGTGGTCACACCTTTCACCC +
Preference number: 4 (lower is better)
Translates to: IAFEGLLLQLGKNIEMVGEYLLK*WSHLSP
Trigger: GGGTGAAAGGTGTGACCAGCATTTCAGCAGATACTC...CCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCTTCAAAAGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp AAGACAAAGGAGCACTTCAAACCCTGCCAAGGGAATATACTCCAGTTATTTAAAACATCCACAGGAATCTaGTCCCCCATTGAAGAGGGA +
Preference number: 4 (lower is better)
Translates to: KTKEHFKPCQGNILQLFKTSTGI*SPIEEG
Trigger: TCCCTCTTCAATGGGGGACCAGATTCCTGTGGATGT...TTTAAATAACTGGAGTATATTCCCTTGGCAGGGTTTGAAGTGCTCCTTTGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CAA 72 bp CCATACTGCAGGTTTTTACTCCAGGAGATGAGGATTTaGGTTTTTGGCACGAACAAGAACCACCTCAACAAA +
Preference number: 4 (lower is better)
Translates to: PYCRFLLQEMRI*VFGTNKNHLNK
Trigger: TTTGTTGAGGTGGTTCTTGTTCGTGCCAAAAACCAAAATCCTCATCTCCTGGAGTAAAAACCTGCAGTATGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GAAAGCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGTGGAGCTGTACTCCTTaGGTCTCTCCAGAACCTCAG +
Preference number: 4 (lower is better)
Translates to: ESPRFSEKHVHFLPYSNKWSCTP*VSPEPQ
Trigger: CTGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCA...CTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGCTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp TTCTTACCCTACAGTAATAAGAACAAACAAGTATATGACTGCCAACAGGCATCTGGGAAGATATCTGGATaGAGTGGATTGCTCCACGTG +
Preference number: 4 (lower is better)
Translates to: FLPYSNKNKQVYDCQQASGKISG*SGLLHV
Trigger: CACGTGGAGCAATCCACTGCATCCAGATATCTTCCC...AGATGCCTGTTGGCAGTCATATACTTGTTTGTTCTTATTACTGTAGGGTAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp AGCCTCATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCTTACGTCCAATAAATaGCATCTTCCTGATAAGCTT +
Preference number: 4 (lower is better)
Translates to: SLIMHCRAYRREVDIYTCLTSNK*HLPDKL
Trigger: AAGCTTATCAGGAAGATGCCATTTATTGGACGTAAG...GCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTATGAGGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCTATCTGCTGAAATGCTaGTCACACCTTTCACCCGGA +
Preference number: 4 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTYLLKC*SHLSPG
Trigger: TCCGGGTGAAAGGTGTGACCAGCATTTCAGCAGATA...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAACAAATCTGGTCCCCCATTaGAGAGGGAACAAGTCATCC +
Preference number: 4 (lower is better)
Translates to: ALDSLKNMFISYPTVIRTNLVPH*RGNKSS
Trigger: GGATGACTTGTTCCCTCTTCAATGGGGGACCAGATT...TGTTCTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAACAGGATCCATCACACCATaGGGAAACTGTGGGGTAGAA +
Preference number: 4 (lower is better)
Translates to: ALDSLKNMFISYPTVIRTGSITP*GNCGVE
Trigger: TTCTACCCCACAGTTTCCTCATGGTGTGATGGATCC...TGTTCTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp AAGACAAAGGAGCACTTCAAACCCTGCCAAGGGAATATACTCCAGTTATTTAAATCCCAGAGCAATAACTaGCAATTGAGGATCACCGAA +
Preference number: 4 (lower is better)
Translates to: KTKEHFKPCQGNILQLFKSQSNN*QLRITE
Trigger: TTCGGTGATCCTCAATTGTCAGTTATTGCTCTGGGA...TTTAAATAACTGGAGTATATTCCCTTGGCAGGGTTTGAAGTGCTCCTTTGTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp ATAATGCACTGTAGAGCATACAGGAGGGAAGTGGACATATACACATGCCCTGTGAGGGCTCATATTTGGTaGAATATCCATTCACATAAT +
Preference number: 4 (lower is better)
Translates to: IMHCRAYRREVDIYTCPVRAHIW*NIHSHN
Trigger: ATTATGTGAATGGATATTGCACCAAATATGAGCCCT...CACAGGGCATGTGTATATGTCCACTTCCCTCCTGTATGCTCTACAGTGCATTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AAGACAAAGGAGCACTTCAAACCCTGCCAAGGGAATATACTCCAGTTATTTAAAGACGGAGGATATTTCTaGAACCAGCTTCCTGTCAAT +
Preference number: 4 (lower is better)
Translates to: KTKEHFKPCQGNILQLFKDGGYF*NQLPVN
Trigger: ATTGACAGGAAGCTGGTTGCAGAAATATCCTCCGTC...TTTAAATAACTGGAGTATATTCCCTTGGCAGGGTTTGAAGTGCTCCTTTGTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR CCA 90 bp TTCTTACCCTACAGTAATAAGAACAAACAAGTATATGACTGCCAACAGGCATCTACCATGAGGAAACTGTaGGGTAGAACAGACCAGCAT +
Preference number: 4 (lower is better)
Translates to: FLPYSNKNKQVYDCQQASTMRKL*GRTDQH
Trigger: ATGCTGGTCTGTTCTACCCCACAGTTTCCTCATGGT...AGATGCCTGTTGGCAGTCATATACTTGTTTGTTCTTATTACTGTAGGGTAAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp GCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAACACACCCGGAAATCAAATaGTTTCTCCAGTGGGTACCC +
Preference number: 4 (lower is better)
Translates to: ALDSLKNMFISYPTVIRTHPEIK*FLQWVP
Trigger: GGGTACCCACTGGAGAAACCATTTGATTTCCGGGTG...TGTTCTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp GCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAACATCCAGGGAAGATATCTaGATGCAGTGGATTGCTCCA +
Preference number: 4 (lower is better)
Translates to: ALDSLKNMFISYPTVIRTSREDI*MQWIAP
Trigger: TGGAGCAATCCACTGCATCCAGATATCTTCCCTGGA...TGTTCTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR TCA 90 bp GCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAACACAATTTCTGGAGTTTTaGTCCCCTTCTCTAACGCCA +
Preference number: 4 (lower is better)
Translates to: ALDSLKNMFISYPTVIRTQFLEF*SPSLTP
Trigger: TGGCGTTAGAGAAGGGGATCAAAACTCCAGAAATTG...TGTTCTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp GCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAACAGATATCTGGATGCAGTaGATTGCTCCACGTGAATTC +
Preference number: 4 (lower is better)
Translates to: ALDSLKNMFISYPTVIRTDIWMQ*IAPREF
Trigger: GAATTCACGTGGAGCAATCCACTGCATCCAGATATC...TGTTCTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
3UTR CAA 72 bp TGGGACATTTATTATTCAATTGCTTTTGAAGGGTTATaGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGG +
Preference number: 4 (lower is better)
Translates to: WDIYYSIAFEGL*LQLGKNIEMVG
Trigger: CCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCTTCAAAAGCAATTGAATAATAAATGTCCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp AAGACAAAGGAGCACTTCAAACCCTGCCAAGGGAATATACTCCAGTTATTTAAAAGGGCTCATATTTGGTaGAATATCCATTCACATAAT +
Preference number: 4 (lower is better)
Translates to: KTKEHFKPCQGNILQLFKRAHIW*NIHSHN
Trigger: ATTATGTGAATGGATATTGCACCAAATATGAGCCCT...TTTAAATAACTGGAGTATATTCCCTTGGCAGGGTTTGAAGTGCTCCTTTGTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CCA 90 bp TTCTTACCCTACAGTAATAAGAACAAACAAGTATATGACTGCCAACAGGCATCTCTTACGTCCAATAAATaGCATCTTCCTGATAAGCTT +
Preference number: 4 (lower is better)
Translates to: FLPYSNKNKQVYDCQQASLTSNK*HLPDKL
Trigger: AAGCTTATCAGGAAGATGCCATTTATTGGACGTAAG...AGATGCCTGTTGGCAGTCATATACTTGTTTGTTCTTATTACTGTAGGGTAAGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR GCA 90 bp TTCTTACCCTACAGTAATAAGAACAAACAAGTATATGACTGCCAACAGGCATCTAGGGCTCATATTTGGTaGAATATCCATTCACATAAT +
Preference number: 4 (lower is better)
Translates to: FLPYSNKNKQVYDCQQASRAHIW*NIHSHN
Trigger: ATTATGTGAATGGATATTGCACCAAATATGAGCCCT...AGATGCCTGTTGGCAGTCATATACTTGTTTGTTCTTATTACTGTAGGGTAAGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS TCA 90 bp GTGCATCAAGGCGGCCCAACAGGCTGCAATGATGCCACCAGGCCGTaGGCCAGCTATGCTTGGAGATGCGTAGACACCACCTTGCCAGTC +
Preference number: 5 (lower is better)
Translates to: VHQGGPTGCNDATRP*ASYAWRCVDTTLPV
Trigger: GACTGGCAAGGTGGTGTCTACGCATCTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATCATTGCAGCCTGTTGGGCCGCCTTGATGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS TCA 90 bp AGCCGTTCTCACCGAAGTGCATCAAGGCGGCCCAACAGGCTGCAATaGTGCCACCAGGCCGTGAGCCAGCTATGCTTGGAGATGCGTAGA +
Preference number: 5 (lower is better)
Translates to: SRSHRSASRRPNRLQ*CHQAVSQLCLEMRR
Trigger: TCTACGCATCTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATCATTGCAGCCTGTTGGGCCGCCTTGATGCACTTCGGTGAGAACGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS TCA 90 bp CACCAGCAGCTCCGTGAGCTTCGGTTCCCCATTGTACACAGCTCCTaGGGCTTTCCCTTCTTGCCAGGAACCATCCATGGAGCTGTACTC +
Preference number: 5 (lower is better)
Translates to: HQQLRELRFPIVHSS*GFPFLPGTIHGAVL
Trigger: GAGTACAGCTCCATGGATGGTTCCTGGCAAGAAGGGAAAGCCTCAGGAGCTGTGTACAATGGGGAACCGAAGCTCACGGAGCTGCTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS TCA 90 bp AGGCTTTCCCTTCTTGCCAGGAACCATCCATGGAGCTGTACTCCTTaGGTCTCTCCAGAACCTCAGCTGTGCCCATACCCTGAGCAGGCA +
Preference number: 5 (lower is better)
Translates to: RLSLLARNHPWSCTP*VSPEPQLCPYPEQA
Trigger: TGCCTGCTCAGGGTATGGGCACAGCTGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCATGGATGGTTCCTGGCAAGAAGGGAAAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS-3UTR CAA 90 bp TGGGAAATTGGCCAGGGATTGGTCCTGTCCCTGTATAGCCCTGGGCAATCAGTCAGCTTCGGTTCCCCATaGTACACAGCTCCTGAGGCT +
Preference number: 5 (lower is better)
Translates to: WEIGQGLVLSLYSPGQSVSFGSP*YTAPEA
Trigger: AGCCTCAGGAGCTGTGTACAATGGGGAACCGAAGCT...GACTGATTGCCCAGGGCTATACAGGGACAGGACCAATCCCTGGCCAATTTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS CCA 90 bp CTTGGCCACTTCGGGGACAGGATCCATCACACCATGAGGAAACTGTaGGGTAGAACAGACCAGCATAGCTGTGTTCCTGGAGATGGCTCT +
Preference number: 5 (lower is better)
Translates to: LGHFGDRIHHTMRKL*GRTDQHSCVPGDGS
Trigger: AGAGCCATCTCCAGGAACACAGCTATGCTGGTCTGTTCTACCCCACAGTTTCCTCATGGTGTGATGGATCCTGTCCCCGAAGTGGCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAATGGAGCTGTACTCCTaGAGTCTCTCCAGAACCTCA +
Preference number: 5 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQMELYS*SLSRTS
Trigger: TGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCAT...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCGCTTCCTGTCAATGGTaGCCTGGGCCATGCCATAGA +
Preference number: 5 (lower is better)
Translates to: GCFSILATCKPERRPRGVASCQW*PGPCHR
Trigger: TCTATGGCATGGCCCAGGCAACCATTGACAGGAAGC...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR CAA 90 bp GCTGCAGCGGGTCCCTCTGAAAAACACCAGCACCCCATGCTAGTGCTACCACAAAGATCCTTCTTGGCTTaGCTCACCTGTTGTTCGATC +
Preference number: 5 (lower is better)
Translates to: AAAGPSEKHQHPMLVLPQRSFLA*LTCCSI
Trigger: GATCGAACAACAGGTGAGCAAAGCCAAGAAGGATCT...TTGTGGTAGCACTAGCATGGGGTGCTGGTGTTTTTCAGAGGGACCCGCTGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp AAGGAACTCACAAGGGTCAAAGTTCAGCGGGGCTTTGGAGAACCGTTCATCTGGAGATGGCTCTCTTCATaGCCTGCACATCCACCTCCA +
Preference number: 5 (lower is better)
Translates to: KELTRVKVQRGFGEPFIWRWLSS*PAHPPP
Trigger: TGGAGGTGGATGTGCAGGCAATGAAGAGAGCCATCT...CCAGATGAACGGTTCTCCAAAGCCCCGCTGAACTTTGACCCTTGTGAGTTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp TGGGAAATTGGCCAGGGATTGGTCCTGTCCCTGTATAGCCCTGGGCAATCAGTCAGGAATGGCATGTTCTaGACAAGATCCTTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: WEIGQGLVLSLYSPGQSVRNGMF*TRSFLA
Trigger: AGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCT...GACTGATTGCCCAGGGCTATACAGGGACAGGACCAATCCCTGGCCAATTTCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp AAAGATGGCAGCAGCCATGGTCATGCACAAGACAAAGGAGCACTTCAAACCCTGAGATGGCTCTCTTCATaGCCTGCACATCCACCTCCA +
Preference number: 5 (lower is better)
Translates to: KDGSSHGHAQDKGALQTLRWLSS*PAHPPP
Trigger: TGGAGGTGGATGTGCAGGCAATGAAGAGAGCCATCT...CAGGGTTTGAAGTGCTCCTTTGTCTTGTGCATGACCATGGCTGCTGCCATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS GCA 90 bp AGAACAGACCAGCATAGCTGTGTTCCTGGAGATGGCTCTCTTCATTaGCTGCACATCCACCTCCATGTTCTTTTTCAGTGCAACTCGGAC +
Preference number: 5 (lower is better)
Translates to: RTDQHSCVPGDGSLH*LHIHLHVLFQCNSD
Trigger: GTCCGAGTTGCACTGAAAAAGAACATGGAGGTGGATGTGCAGGCAATGAAGAGAGCCATCTCCAGGAACACAGCTATGCTGGTCTGTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp GGGGCAGGAAGAACACACACTGATGGAGCAAGTGTCCTCTGCACATCTTCACACTGCCAGGGCTCATATTaGGTGCAATATCCATTCACA +
Preference number: 5 (lower is better)
Translates to: GAGRTHTDGASVLCTSSHCQGSY*VQYPFT
Trigger: TGTGAATGGATATTGCACCAAATATGAGCCCTGGCA...GTGTGAAGATGTGCAGAGGACACTTGCTCCATCAGTGTGTGTTCTTCCTGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp GGATGCTTCTCCATTTTAGCCACTTGTAAGCCAGAGAGGAGGCCCAGAGGAGTCTTGACAAGATCCTTCTaGGCTTTGCTCACCTGTTGT +
Preference number: 5 (lower is better)
Translates to: GCFSILATCKPERRPRGVLTRSF*ALLTCC
Trigger: ACAACAGGTGAGCAAAGCCAAGAAGGATCTTGTCAA...GACTCCTCTGGGCCTCCTCTCTGGCTTACAAGTGGCTAAAATGGAGAAGCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTTTGACAAGATCCTTCTaGGCTTTGCTCACCTGTTGT +
Preference number: 5 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPLTRSF*ALLTCC
Trigger: ACAACAGGTGAGCAAAGCCAAGAAGGATCTTGTCAA...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp ACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGGGAATCTGGTCCCCCATaGAAGAGGGAACAAGTCATC +
Preference number: 5 (lower is better)
Translates to: TNKYMTANRHLQRWQQPWESGPP*KREQVI
Trigger: GATGACTTGTTCCCTCTTCAATGGGGGACCAGATTC...CCATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp TGTGTACACTCAGGAATTCAGCCTCTCTCTGACACACCAACCATCCCTGAGCCTAGGAAGCGAGCAGTTTaGATGATCTGTTTGGTAGCT +
Preference number: 5 (lower is better)
Translates to: CVHSGIQPLSDTPTIPEPRKRAV*MICLVA
Trigger: AGCTACCAAACAGATCATCAAAACTGCTCGCTTCCT...AGGCTCAGGGATGGTTGGTGTGTCAGAGAGAGGCTGAATTCCTGAGTGTACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp CCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTCTGTTCCAGGAATGGCATGTTCTaGACAAGATCCTTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: PIVLYGASPDVKLCAVCSRNGMF*TRSFLA
Trigger: AGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCT...GGAACAGACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp GGTTTATCCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTATGGAGCTGTACTCCTaGAGTCTCTCCAGAACCTCA +
Preference number: 5 (lower is better)
Translates to: GLSYCALRSQSRCQIVCSMELYS*SLSRTS
Trigger: TGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCAT...ACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp GGTTTATCCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTGAATCTGGTCCCCCATaGAAGAGGGAACAAGTCATC +
Preference number: 5 (lower is better)
Translates to: GLSYCALRSQSRCQIVCSESGPP*KREQVI
Trigger: GATGACTTGTTCCCTCTTCAATGGGGGACCAGATTC...ACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS TCA 90 bp CATACACCCAGACTATCAGCAGAGTACACAGGACACTCCACGCAATaGGCTGCCAGGGCTCATATTTGGTGCAATATCCATTCACATAAT +
Preference number: 5 (lower is better)
Translates to: HTPRLSAEYTGHSTQ*AARAHIWCNIHSHN
Trigger: ATTATGTGAATGGATATTGCACCAAATATGAGCCCTGGCAGCTCATTGCGTGGAGTGTCCTGTGTACTCTGCTGATAGTCTGGGTGTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000126307.2
ENSMUST00000137833.2
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS GCA 90 bp CTTTTTCAGTGCAACTCGGACAATCTTCATCCCAAAATAATGAGCTaGTTTGTCGAATGCAGCATGGGCACTCTCGGGAGCCACAATTTC +
Preference number: 5 (lower is better)
Translates to: LFQCNSDNLHPKIMS*FVECSMGTLGSHNF
Trigger: GAAATTGTGGCTCCCGAGAGTGCCCATGCTGCATTCGACAAAGCAGCTCATTATTTTGGGATGAAGATTGTCCGAGTTGCACTGAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp ATTGCTTTTGAAGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGAGCTTCGGTTCCCCATaGTACACAGCTCCTGAGGCT +
Preference number: 5 (lower is better)
Translates to: IAFEGLLLQLGKNIEMVGSFGSP*YTAPEA
Trigger: AGCCTCAGGAGCTGTGTACAATGGGGAACCGAAGCT...CCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCTTCAAAAGCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp AGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGACATTAGAGACAGATGGCTCTCTTCATaGCCTGCACATCCACCTCCA +
Preference number: 5 (lower is better)
Translates to: RVIAAVRKEHRDGRDIRDRWLSS*PAHPPP
Trigger: TGGAGGTGGATGTGCAGGCAATGAAGAGAGCCATCT...GTCTCTAATGTCCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp AACAAACAAGTATATGACTGCCAACAGGCATCTCCAAAGATGGCAGCAGCCATGAGGAATGGCATGTTCTaGACAAGATCCTTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: NKQVYDCQQASPKMAAAMRNGMF*TRSFLA
Trigger: AGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCT...CATGGCTGCTGCCATCTTTGGAGATGCCTGTTGGCAGTCATATACTTGTTTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp GGTTTATCCTATTGTGCTCTACGGAGCCAGTCCAGATGTCAAATTGTGTGCAGTAGGAAGCGAGCAGTTTaGATGATCTGTTTGGTAGCT +
Preference number: 5 (lower is better)
Translates to: GLSYCALRSQSRCQIVCSRKRAV*MICLVA
Trigger: AGCTACCAAACAGATCATCAAAACTGCTCGCTTCCT...ACTGCACACAATTTGACATCTGGACTGGCTCCGTAGAGCACAATAGGATAAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp ATTGCTTTTGAAGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGGAATCTGGTCCCCCATaGAAGAGGGAACAAGTCATC +
Preference number: 5 (lower is better)
Translates to: IAFEGLLLQLGKNIEMVGESGPP*KREQVI
Trigger: GATGACTTGTTCCCTCTTCAATGGGGGACCAGATTC...CCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCTTCAAAAGCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp TTCTTACCCTACAGTAATAAGAACAAACAAGTATATGACTGCCAACAGGCATCTGCTTCCTGTCAATGGTaGCCTGGGCCATGCCATAGA +
Preference number: 5 (lower is better)
Translates to: FLPYSNKNKQVYDCQQASASCQW*PGPCHR
Trigger: TCTATGGCATGGCCCAGGCAACCATTGACAGGAAGC...AGATGCCTGTTGGCAGTCATATACTTGTTTGTTCTTATTACTGTAGGGTAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
CDS-3UTR CAA 90 bp ATTGCTTTTGAAGGGTTATTGCTGCAGTTAGGAAAGAACATAGAGATGGTAGGGAGATCCTTCTTGGCTTaGCTCACCTGTTGTTCGATC +
Preference number: 5 (lower is better)
Translates to: IAFEGLLLQLGKNIEMVGRSFLA*LTCCSI
Trigger: GATCGAACAACAGGTGAGCAAAGCCAAGAAGGATCT...CCCTACCATCTCTATGTTCTTTCCTAACTGCAGCAATAACCCTTCAAAAGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCATGGAGCTGTACTCCTaGAGTCTCTCCAGAACCTCA +
Preference number: 5 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTMELYS*SLSRTS
Trigger: TGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCAT...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp GAAAGCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAGCTTCGGTTCCCCATaGTACACAGCTCCTGAGGCT +
Preference number: 5 (lower is better)
Translates to: ESPRFSEKHVHFLPYSNKSFGSP*YTAPEA
Trigger: AGCCTCAGGAGCTGTGTACAATGGGGAACCGAAGCT...CTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGCTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp CATAGAGATGGTAGGGACATTAGAGACAAAATAGATTTCAAAGAGGCAAGTACCTTGACAAGATCCTTCTaGGCTTTGCTCACCTGTTGT +
Preference number: 5 (lower is better)
Translates to: HRDGRDIRDKIDFKEASTLTRSF*ALLTCC
Trigger: ACAACAGGTGAGCAAAGCCAAGAAGGATCTTGTCAA...GGTACTTGCCTCTTTGAAATCTATTTTGTCTCTAATGTCCCTACCATCTCTATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp AAGACAAAGGAGCACTTCAAACCCTGCCAAGGGAATATACTCCAGTTATTTAAAAGGAAGCGAGCAGTTTaGATGATCTGTTTGGTAGCT +
Preference number: 5 (lower is better)
Translates to: KTKEHFKPCQGNILQLFKRKRAV*MICLVA
Trigger: AGCTACCAAACAGATCATCAAAACTGCTCGCTTCCT...TTTAAATAACTGGAGTATATTCCCTTGGCAGGGTTTGAAGTGCTCCTTTGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS CCA 90 bp GCTGCCAGGGCTCATATTTGGTGCAATATCCATTCACATAATTCTTaGCTTTTGTGGAATATGATTCCAAAATCTCCAAATAAGGCTCGA +
Preference number: 5 (lower is better)
Translates to: AARAHIWCNIHSHNS*LLWNMIPKSPNKAR
Trigger: TCGAGCCTTATTTGGAGATTTTGGAATCATATTCCACAAAAGCCAAGAATTATGTGAATGGATATTGCACCAAATATGAGCCCTGGCAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000126307.2
ENSMUST00000137833.2
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS-3UTR CAA 90 bp TTCTTACCCTACAGTAATAAGAACAAACAAGTATATGACTGCCAACAGGCATCTTGCCAGGGCTCATATTaGGTGCAATATCCATTCACA +
Preference number: 5 (lower is better)
Translates to: FLPYSNKNKQVYDCQQASCQGSY*VQYPFT
Trigger: TGTGAATGGATATTGCACCAAATATGAGCCCTGGCA...AGATGCCTGTTGGCAGTCATATACTTGTTTGTTCTTATTACTGTAGGGTAAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS-3UTR CAA 90 bp GCCCTAGATTCTCTGAAAAACATGTTCATTTCTTACCCTACAGTAATAAGAACATGCCAGGGCTCATATTaGGTGCAATATCCATTCACA +
Preference number: 5 (lower is better)
Translates to: ALDSLKNMFISYPTVIRTCQGSY*VQYPFT
Trigger: TGTGAATGGATATTGCACCAAATATGAGCCCTGGCA...TGTTCTTATTACTGTAGGGTAAGAAATGAACATGTTTTTCAGAGAATCTAGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS TCA 72 bp GGCGGCCCAACAGGCTGCAATGATGCCACCAGGCCGTaGGCCAGCTATGCTTGGAGATGCGTAGACACCACC +
Preference number: 6 (lower is better)
Translates to: GGPTGCNDATRP*ASYAWRCVDTT
Trigger: GGTGGTGTCTACGCATCTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATCATTGCAGCCTGTTGGGCCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS TCA 72 bp CACCGAAGTGCATCAAGGCGGCCCAACAGGCTGCAATaGTGCCACCAGGCCGTGAGCCAGCTATGCTTGGAG +
Preference number: 6 (lower is better)
Translates to: HRSASRRPNRLQ*CHQAVSQLCLE
Trigger: CTCCAAGCATAGCTGGCTCACGGCCTGGTGGCATCATTGCAGCCTGTTGGGCCGCCTTGATGCACTTCGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS CAA 72 bp GCCTGCACCAGCAGCTCCGTGAGCTTCGGTTCCCCATaGTACACAGCTCCTGAGGCTTTCCCTTCTTGCCAG +
Preference number: 6 (lower is better)
Translates to: ACTSSSVSFGSP*YTAPEAFPSCQ
Trigger: CTGGCAAGAAGGGAAAGCCTCAGGAGCTGTGTACAATGGGGAACCGAAGCTCACGGAGCTGCTGGTGCAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS TCA 72 bp CTCCGTGAGCTTCGGTTCCCCATTGTACACAGCTCCTaGGGCTTTCCCTTCTTGCCAGGAACCATCCATGGA +
Preference number: 6 (lower is better)
Translates to: LRELRFPIVHSS*GFPFLPGTIHG
Trigger: TCCATGGATGGTTCCTGGCAAGAAGGGAAAGCCTCAGGAGCTGTGTACAATGGGGAACCGAAGCTCACGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS CAA 72 bp CCTTCTTGCCAGGAACCATCCATGGAGCTGTACTCCTaGAGTCTCTCCAGAACCTCAGCTGTGCCCATACCC +
Preference number: 6 (lower is better)
Translates to: PSCQEPSMELYS*SLSRTSAVPIP
Trigger: GGGTATGGGCACAGCTGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCATGGATGGTTCCTGGCAAGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS TCA 72 bp CTTCTTGCCAGGAACCATCCATGGAGCTGTACTCCTTaGGTCTCTCCAGAACCTCAGCTGTGCCCATACCCT +
Preference number: 6 (lower is better)
Translates to: LLARNHPWSCTP*VSPEPQLCPYP
Trigger: AGGGTATGGGCACAGCTGAGGTTCTGGAGAGACTCAAGGAGTACAGCTCCATGGATGGTTCCTGGCAAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS GCA 72 bp TCCCCATTGTACACAGCTCCTGAGGCTTTCCCTTCTTaGCAGGAACCATCCATGGAGCTGTACTCCTTGAGT +
Preference number: 6 (lower is better)
Translates to: SPLYTAPEAFPS*QEPSMELYSLS
Trigger: ACTCAAGGAGTACAGCTCCATGGATGGTTCCTGGCAAGAAGGGAAAGCCTCAGGAGCTGTGTACAATGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS CCA 72 bp TTCGGGGACAGGATCCATCACACCATGAGGAAACTGTaGGGTAGAACAGACCAGCATAGCTGTGTTCCTGGA +
Preference number: 6 (lower is better)
Translates to: FGDRIHHTMRKL*GRTDQHSCVPG
Trigger: TCCAGGAACACAGCTATGCTGGTCTGTTCTACCCCACAGTTTCCTCATGGTGTGATGGATCCTGTCCCCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS TCA 72 bp CCAGACAAGCATCCACATGGAGTGGGATTTTATATCTaGCAGCCAACTTGGCCACTTCGGGGACAGGATCCA +
Preference number: 6 (lower is better)
Translates to: PDKHPHGVGFYI*QPTWPLRGQDP
Trigger: TGGATCCTGTCCCCGAAGTGGCCAAGTTGGCTGTCAGATATAAAATCCCACTCCATGTGGATGCTTGTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS CCA 72 bp TTCCGTTCCCCCAGAAGTCACACATCCACAGGAATCTaGTCCCCCATTGAAGAGGGAACAAGTCATCCTAAC +
Preference number: 6 (lower is better)
Translates to: FRSPRSHTSTGI*SPIEEGTSHPN
Trigger: GTTAGGATGACTTGTTCCCTCTTCAATGGGGGACCAGATTCCTGTGGATGTGTGACTTCTGGGGGAACGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS CAA 90 bp TCCGTTCCCCCAGAAGTCACACATCCACAGGAATCTGGTCCCCCATaGAAGAGGGAACAAGTCATCCTAACGATTTCTGCCTCTAACTTC +
Preference number: 6 (lower is better)
Translates to: SVPPEVTHPQESGPP*KREQVILTISASNF
Trigger: GAAGTTAGAGGCAGAAATCGTTAGGATGACTTGTTCCCTCTTCAATGGGGGACCAGATTCCTGTGGATGTGTGACTTCTGGGGGAACGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS GCA 72 bp TGCAACTCGGACAATCTTCATCCCAAAATAATGAGCTaGTTTGTCGAATGCAGCATGGGCACTCTCGGGAGC +
Preference number: 6 (lower is better)
Translates to: CNSDNLHPKIMS*FVECSMGTLGS
Trigger: GCTCCCGAGAGTGCCCATGCTGCATTCGACAAAGCAGCTCATTATTTTGGGATGAAGATTGTCCGAGTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS CAA 72 bp CCAGAAGTCACACATCCACAGGAATCTGGTCCCCCATaGAAGAGGGAACAAGTCATCCTAACGATTTCTGCC +
Preference number: 6 (lower is better)
Translates to: PEVTHPQESGPP*KREQVILTISA
Trigger: GGCAGAAATCGTTAGGATGACTTGTTCCCTCTTCAATGGGGGACCAGATTCCTGTGGATGTGTGACTTCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS TCA 72 bp AGACTATCAGCAGAGTACACAGGACACTCCACGCAATaGGCTGCCAGGGCTCATATTTGGTGCAATATCCAT +
Preference number: 6 (lower is better)
Translates to: RLSAEYTGHSTQ*AARAHIWCNIH
Trigger: ATGGATATTGCACCAAATATGAGCCCTGGCAGCTCATTGCGTGGAGTGTCCTGTGTACTCTGCTGATAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000126307.2
ENSMUST00000137833.2
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS GCA 72 bp ATCAGCAGAGTACACAGGACACTCCACGCAATGAGCTaGCAGGGCTCATATTTGGTGCAATATCCATTCACA +
Preference number: 6 (lower is better)
Translates to: ISRVHRTLHAMS*QGSYLVQYPFT
Trigger: TGTGAATGGATATTGCACCAAATATGAGCCCTGGCAGCTCATTGCGTGGAGTGTCCTGTGTACTCTGCTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000126307.2
ENSMUST00000137833.2
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS GCA 72 bp AATCTTCATCCCAAAATAATGAGCTGCTTTGTCGAATaGAGCATGGGCACTCTCGGGAGCCACAATTTCTGG +
Preference number: 6 (lower is better)
Translates to: NLHPKIMSCFVE*SMGTLGSHNFW
Trigger: CCAGAAATTGTGGCTCCCGAGAGTGCCCATGCTGCATTCGACAAAGCAGCTCATTATTTTGGGATGAAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS CCA 72 bp CACACCTTTCACCCGGAAATCAAATGGTTTCTCCAGTaGGTACCCTGCTTTCTCCATGAAGACAATGAGGAA +
Preference number: 6 (lower is better)
Translates to: HTFHPEIKWFLQ*VPCFLHEDNEE
Trigger: TTCCTCATTGTCTTCATGGAGAAAGCAGGGTACCCACTGGAGAAACCATTTGATTTCCGGGTGAAAGGTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS CAA 72 bp ACCTTTAGGAATGGCATGTTCTTGACAAGATCCTTCTaGGCTTTGCTCACCTGTTGTTCGATCTTACGTCCA +
Preference number: 6 (lower is better)
Translates to: TFRNGMFLTRSF*ALLTCCSILRP
Trigger: TGGACGTAAGATCGAACAACAGGTGAGCAAAGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCTAAAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS CAA 72 bp AGGAATGGCATGTTCTTGACAAGATCCTTCTTGGCTTaGCTCACCTTACGTCCAATAAATGGCATCTTCCTG +
Preference number: 6 (lower is better)
Translates to: RNGMFLTRSFLA*LTLRPINGIFL
Trigger: CAGGAAGATGCCATTTATTGGACGTAAGGTGAGCAAAGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137833.2
CDS TCA 72 bp CATAATCCTTGTCCACCTTTAGGAATGGCATGTTCTTaGCAAGATCCTTCTTGGCTTTGCTCACCTGTTGTT +
Preference number: 6 (lower is better)
Translates to: HNPCPPLGMACS*QDPSWLCSPVV
Trigger: AACAACAGGTGAGCAAAGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCTAAAGGTGGACAAGGATTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS TCA 72 bp ACCTTTAGGAGCATAGCCATACTTATGAGTATCTGCTaGAATGCTGGTCACACCTTTCACCCGGAAATCAAA +
Preference number: 6 (lower is better)
Translates to: TFRSIAILMSIC*NAGHTFHPEIK
Trigger: TTTGATTTCCGGGTGAAAGGTGTGACCAGCATTTCAGCAGATACTCATAAGTATGGCTATGCTCCTAAAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS CCA 72 bp GAGCATAGCCATACTTATGAGTATCTGCTGAAATGCTaGTCACACCTTTCACCCGGAAATCAAATGGTTTCT +
Preference number: 6 (lower is better)
Translates to: EHSHTYEYLLKC*SHLSPGNQMVS
Trigger: AGAAACCATTTGATTTCCGGGTGAAAGGTGTGACCAGCATTTCAGCAGATACTCATAAGTATGGCTATGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS CAA 72 bp ACCTTTAGGAATGGCATGTTCTTGACAAGATCCTTCTaGGCTTTGCTCACCTTACGTCCAATAAATGGCATC +
Preference number: 6 (lower is better)
Translates to: TFRNGMFLTRSF*ALLTLRPINGI
Trigger: GATGCCATTTATTGGACGTAAGGTGAGCAAAGCCAAGAAGGATCTTGTCAAGAACATGCCATTCCTAAAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137833.2
CDS CAA 90 bp GAATGGCATGTTCTTGACAAGATCCTTCTTGGCTTTGCTCACCTGTaGTTCGATCTTACGTCCAATAAATGGCATCTTCCTGATAAGCTT +
Preference number: 6 (lower is better)
Translates to: EWHVLDKILLGFAHL*FDLTSNKWHLPDKL
Trigger: AAGCTTATCAGGAAGATGCCATTTATTGGACGTAAGATCGAACAACAGGTGAGCAAAGCCAAGAAGGATCTTGTCAAGAACATGCCATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
ENSMUST00000155919.8
CDS TCA 72 bp GTAAATGTCAAAATCGTTGGATCCCAGAGCAATAACTaGCAATTGAGGATCACCGAAAATGAAGATGTTTTT +
Preference number: 6 (lower is better)
Translates to: VNVKIVGSQSNN*QLRITENEDVF
Trigger: AAAAACATCTTCATTTTCGGTGATCCTCAATTGTCAGTTATTGCTCTGGGATCCAACGATTTTGACATTTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000150258.8
CDS TCA 72 bp ATATCCATTCACATAATTCTTGGCTTTTGTGGAATATaGTTCCAAAATCTCCAAATAAGGCTCGAAGTCCTT +
Preference number: 6 (lower is better)
Translates to: ISIHIILGFCGI*FQNLQIRLEVL
Trigger: AAGGACTTCGAGCCTTATTTGGAGATTTTGGAATCATATTCCACAAAAGCCAAGAATTATGTGAATGGATAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000092498.12
ENSMUST00000122259.8
ENSMUST00000126307.2
ENSMUST00000137833.2
ENSMUST00000150258.8
ENSMUST00000155919.8