RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SGO2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094443

Ensembl transcript IDs: ENSMUST00000179944.2

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGCAGGTTAGTCCACTCTCCAGGACTAGTATCTGCTTCGTTTGGATaGTGTCTTAAGCCAGAGTCTAAGGTGACCGACACCTGGGAAGAA +
Preference number: 5 (lower is better)
Translates to: GRLVHSPGLVSASFG*CLKPESKVTDTWEE
Trigger: TTCTTCCCAGGTGTCGGTCACCTTAGACTCTGGCTTAAGACACCATCCAAACGAAGCAGATACTAGTCCTGGAGAGTGGACTAACCTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 90 bp GCTGCTCAGTACTGGAAATACAGTTTGGCTCTTCTGAATCCCCTCTaGCATCCAGGACACCAGAGCCTCTTTTTGCTCTGCTTTCATCAG +
Preference number: 5 (lower is better)
Translates to: AAQYWKYSLALLNPL*HPGHQSLFLLCFHQ
Trigger: CTGATGAAAGCAGAGCAAAAAGAGGCTCTGGTGTCCTGGATGGCAGAGGGGATTCAGAAGAGCCAAACTGTATTTCCAGTACTGAGCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS TCA 90 bp GAAACACTCAACTTTGTCTTTGCAATTCGGTCCTTCACACGTCTCTaGATTCCAGAGGTAACAGCGTCAACTTCTATCCCTGGGTACTCC +
Preference number: 5 (lower is better)
Translates to: ETLNFVFAIRSFTRL*IPEVTASTSIPGYS
Trigger: GGAGTACCCAGGGATAGAAGTTGACGCTGTTACCTCTGGAATTCAGAGACGTGTGAAGGACCGAATTGCAAAGACAAAGTTGAGTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS TCA 90 bp GTAGGGTTTTCTGACACAGGTCAAATTTACCATCTTGAAGGAATTTaGCTGAATGTCTGGAGAAAGGGTTTGCTTCCTCTTGCTCATCTA +
Preference number: 5 (lower is better)
Translates to: VGFSDTGQIYHLEGI*LNVWRKGLLPLAHL
Trigger: TAGATGAGCAAGAGGAAGCAAACCCTTTCTCCAGACATTCAGTCAAATTCCTTCAAGATGGTAAATTTGACCTGTGTCAGAAAACCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 90 bp CAGTGTTATGAAAATGAAAGTTGTCAGTTTTCTGCACTTGCTCCATaGGCTTTACATAAGGCTCACTGGAAGATTCAGAAGGTAAGCCAA +
Preference number: 5 (lower is better)
Translates to: QCYENESCQFSALAP*ALHKAHWKIQKVSQ
Trigger: TTGGCTTACCTTCTGAATCTTCCAGTGAGCCTTATGTAAAGCGCATGGAGCAAGTGCAGAAAACTGACAACTTTCATTTTCATAACACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 90 bp TTCTCTTTCTCTTTACTAAGGGCCCGCGCTAGTGCTCTGTTGTTGTaGTTTAGAGAGATCCTGAACATAGAAGAATTGTTGAATAGTTTT +
Preference number: 5 (lower is better)
Translates to: FSFSLLRARASALLL*FREILNIEELLNSF
Trigger: AAAACTATTCAACAATTCTTCTATGTTCAGGATCTCTCTAAAGCACAACAACAGAGCACTAGCGCGGGCCCTTAGTAAAGAGAAAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CCA 90 bp TTCAACCCCAAGAGCATTTCAGACTTATATGGCTCTGCACTATCTTaGTTACAAAGAGCAGGCATATCAGACTCACTTAAGTCTTTTAAG +
Preference number: 5 (lower is better)
Translates to: FNPKSISDLYGSALS*LQRAGISDSLKSFK
Trigger: CTTAAAAGACTTAAGTGAGTCTGATATGCCTGCTCTTTGTAACCAAGATAGTGCAGAGCCATATAAGTCTGAAATGCTCTTGGGGTTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 72 bp GCGCACTGTCTTTTCCTTCTCCTCGGGGGTGAAGACTaGTCTTCTGACTCATTCTCAGGGTTAGCAGTGTTA +
Preference number: 6 (lower is better)
Translates to: AHCLFLLLGGED*SSDSFSGLAVL
Trigger: TAACACTGCTAACCCTGAGAATGAGTCAGAAGAGCAGTCTTCACCCCCGAGGAGAAGGAAAAGACAGTGCGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CCA 72 bp GTCCACTCTCCAGGACTAGTATCTGCTTCGTTTGGATaGTGTCTTAAGCCAGAGTCTAAGGTGACCGACACC +
Preference number: 6 (lower is better)
Translates to: VHSPGLVSASFG*CLKPESKVTDT
Trigger: GGTGTCGGTCACCTTAGACTCTGGCTTAAGACACCATCCAAACGAAGCAGATACTAGTCCTGGAGAGTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS TCA 72 bp CTTCGTTTGGATGGTGTCTTAAGCCAGAGTCTAAGGTaGCCGACACCTGGGAAGAATCTGTTAACCGCAGAC +
Preference number: 6 (lower is better)
Translates to: LRLDGVLSQSLR*PTPGKNLLTAD
Trigger: GTCTGCGGTTAACAGATTCTTCCCAGGTGTCGGTCACCTTAGACTCTGGCTTAAGACACCATCCAAACGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 72 bp TACTGGAAATACAGTTTGGCTCTTCTGAATCCCCTCTaGCATCCAGGACACCAGAGCCTCTTTTTGCTCTGC +
Preference number: 6 (lower is better)
Translates to: YWKYSLALLNPL*HPGHQSLFLLC
Trigger: GCAGAGCAAAAAGAGGCTCTGGTGTCCTGGATGGCAGAGGGGATTCAGAAGAGCCAAACTGTATTTCCAGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 72 bp CTCTGCCATCCAGGACACCAGAGCCTCTTTTTGCTCTaGTTTCATCAGTCTCTTTTTCAGCACCTACTTCTG +
Preference number: 6 (lower is better)
Translates to: LCHPGHQSLFLL*FHQSLFQHLLL
Trigger: CAGAAGTAGGTGCTGAAAAAGAGACTGATGAAAGCAGAGCAAAAAGAGGCTCTGGTGTCCTGGATGGCAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 72 bp GTGGGGATTATGAGTGCCTGCCGTTATCTTCTCACGTaGATCATCACCAACTTGAAAGATGCATGTACTCTC +
Preference number: 6 (lower is better)
Translates to: VGIMSACRYLLT*IITNLKDACTL
Trigger: GAGAGTACATGCATCTTTCAAGTTGGTGATGATGCACGTGAGAAGATAACGGCAGGCACTCATAATCCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CCA 72 bp TCTGCACTTGCTCCATGCGCTTTACATAAGGCTCACTaGAAGATTCAGAAGGTAAGCCAAGAAAACACTCGG +
Preference number: 6 (lower is better)
Translates to: SALAPCALHKAH*KIQKVSQENTR
Trigger: CCGAGTGTTTTCTTGGCTTACCTTCTGAATCTTCCAGTGAGCCTTATGTAAAGCGCATGGAGCAAGTGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CCA 72 bp TCTTTTGCGTGTTTACCTGAGATGGCTGCTCAGTACTaGAAATACAGTTTGGCTCTTCTGAATCCCCTCTGC +
Preference number: 6 (lower is better)
Translates to: SFACLPEMAAQY*KYSLALLNPLC
Trigger: GCAGAGGGGATTCAGAAGAGCCAAACTGTATTTCCAGTACTGAGCAGCCATCTCAGGTAAACACGCAAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 72 bp AATTTGGATGTCATTTCACTAACTGCTTTGGCTGGGTaGCTTCTTGCTTTTCCCGCACTCACAGAGAAGGCA +
Preference number: 6 (lower is better)
Translates to: NLDVISLTALAG*LLAFPALTEKA
Trigger: TGCCTTCTCTGTGAGTGCGGGAAAAGCAAGAAGCAACCCAGCCAAAGCAGTTAGTGAAATGACATCCAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS TCA 72 bp AACTTTGTCTTTGCAATTCGGTCCTTCACACGTCTCTaGATTCCAGAGGTAACAGCGTCAACTTCTATCCCT +
Preference number: 6 (lower is better)
Translates to: NFVFAIRSFTRL*IPEVTASTSIP
Trigger: AGGGATAGAAGTTGACGCTGTTACCTCTGGAATTCAGAGACGTGTGAAGGACCGAATTGCAAAGACAAAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 72 bp TCTTTACTAAGGGCCCGCGCTAGTGCTCTGTTGTTGTaGTTTAGAGAGATCCTGAACATAGAAGAATTGTTG +
Preference number: 6 (lower is better)
Translates to: SLLRARASALLL*FREILNIEELL
Trigger: CAACAATTCTTCTATGTTCAGGATCTCTCTAAAGCACAACAACAGAGCACTAGCGCGGGCCCTTAGTAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 72 bp TTCTCTTTACTAAGGGCCCGCGCTAGTGCTCTGTTGTaGTGCTTTAGAGAGATCCTGAACATAGAAGAATTG +
Preference number: 6 (lower is better)
Translates to: FSLLRARASALL*CFREILNIEEL
Trigger: CAATTCTTCTATGTTCAGGATCTCTCTAAAGCACAACAACAGAGCACTAGCGCGGGCCCTTAGTAAAGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS TCA 72 bp TTTCATCTCACTCGGAGAACTCTGAGGACTTTGATCTaGGTGACAATGGCTCTCATTAGGAAGTACATCAAC +
Preference number: 6 (lower is better)
Translates to: FHLTRRTLRTLI*VTMALIRKYIN
Trigger: GTTGATGTACTTCCTAATGAGAGCCATTGTCACTCAGATCAAAGTCCTCAGAGTTCTCCGAGTGAGATGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 72 bp TTATCTTCTCACGTGCATCATCACCAACTTGAAAGATaGATGTACTCTCCAGGGAAGAACTTTCTTCCAGCA +
Preference number: 6 (lower is better)
Translates to: LSSHVHHHQLER*MYSPGKNFLPA
Trigger: TGCTGGAAGAAAGTTCTTCCCTGGAGAGTACATGCATCTTTCAAGTTGGTGATGATGCACGTGAGAAGATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CCA 72 bp AGACTTCCACTGGTGGTTACTTTATCTGCTTGGGTTTaGAAGGGAAAGTTGCCTTTTTCTAGGAAGTGCATA +
Preference number: 6 (lower is better)
Translates to: RLPLVVTLSAWV*KGKLPFSRKCI
Trigger: TATGCACTTCCTAGAAAAAGGCAACTTTCCCTTCCAAACCCAAGCAGATAAAGTAACCACCAGTGGAAGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 90 bp GAGTTCTCTTTCTCTTTACTAAGGGCCCGCGCTAGTGCTCTGTTGTaGTGCTTTAGAGAGATCCTGAACATAGAAGAATTGTTGAATAGT +
Preference number: 6 (lower is better)
Translates to: EFSFSLLRARASALL*CFREILNIEELLNS
Trigger: ACTATTCAACAATTCTTCTATGTTCAGGATCTCTCTAAAGCACAACAACAGAGCACTAGCGCGGGCCCTTAGTAAAGAGAAAGAGAACTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 90 bp TTTGCTCATTTGAGACTCATTCTGAGCAGGGTATATACCAGTAATTaGCTTGTGCAGATCCATAACATTCTGGGTCTCACAGTCTCGCAA +
Preference number: 6 (lower is better)
Translates to: FAHLRLILSRVYTSN*LVQIHNILGLTVSQ
Trigger: TTGCGAGACTGTGAGACCCAGAATGTTATGGATCTGCACAAGCAAATTACTGGTATATACCCTGCTCAGAATGAGTCTCAAATGAGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS TCA 72 bp ACACAGGTCAAATTTACCATCTTGAAGGAATTTGACTaGATGTCTGGAGAAAGGGTTTGCTTCCTCTTGCTC +
Preference number: 6 (lower is better)
Translates to: TQVKFTILKEFD*MSGERVCFLLL
Trigger: GAGCAAGAGGAAGCAAACCCTTTCTCCAGACATTCAGTCAAATTCCTTCAAGATGGTAAATTTGACCTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 72 bp TTGACTGAATGTCTGGAGAAAGGGTTTGCTTCCTCTTaGTCATCTAGCATATATGTTCGCCTCCTCTTTTTA +
Preference number: 6 (lower is better)
Translates to: LTECLEKGFASS*SSSIYVRLLFL
Trigger: TAAAAAGAGGAGGCGAACATATATGCTAGATGAGCAAGAGGAAGCAAACCCTTTCTCCAGACATTCAGTCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 72 bp TTTCAACCCCAAGAGCATTTCAGACTTATATGGCTCTaGACTATCTTGGTTACAAAGAGCAGGCATATCAGA +
Preference number: 6 (lower is better)
Translates to: FQPQEHFRLIWL*TILVTKSRHIR
Trigger: TCTGATATGCCTGCTCTTTGTAACCAAGATAGTGCAGAGCCATATAAGTCTGAAATGCTCTTGGGGTTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 72 bp CTTTTCTTTAATTTGGATGTCATTTCACTAACTGCTTaGGCTGGGTTGCTTCTTGCTTTTCCCGCACTCACA +
Preference number: 6 (lower is better)
Translates to: LFFNLDVISLTA*AGLLLAFPALT
Trigger: TGTGAGTGCGGGAAAAGCAAGAAGCAACCCAGCCAAAGCAGTTAGTGAAATGACATCCAAATTAAAGAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 90 bp TTCAGACACAGTGTTATGAAAATGAAAGTTGTCAGTTTTCTGCACTaGCTCCATGCGCTTTACATAAGGCTCACTGGAAGATTCAGAAGG +
Preference number: 6 (lower is better)
Translates to: FRHSVMKMKVVSFLH*LHALYIRLTGRFRR
Trigger: CCTTCTGAATCTTCCAGTGAGCCTTATGTAAAGCGCATGGAGCAAGTGCAGAAAACTGACAACTTTCATTTTCATAACACTGTGTCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 90 bp CTTCCACTGGTGGTTACTTTATCTGCTTGGGTTTGGAAGGGAAAGTaGCCTTTTTCTAGGAAGTGCATATCTTTATCATTGTCCTCATAT +
Preference number: 6 (lower is better)
Translates to: LPLVVTLSAWVWKGK*PFSRKCISLSLSSY
Trigger: ATATGAGGACAATGATAAAGATATGCACTTCCTAGAAAAAGGCAACTTTCCCTTCCAAACCCAAGCAGATAAAGTAACCACCAGTGGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 90 bp TACTGCTGTCTTGCGATTTACTTTCTGCCTAGGATTTTTGCTCATTaGAGACTCATTCTGAGCAGGGTATATACCAGTAATTTGCTTGTG +
Preference number: 6 (lower is better)
Translates to: YCCLAIYFLPRIFAH*RLILSRVYTSNLLV
Trigger: CACAAGCAAATTACTGGTATATACCCTGCTCAGAATGAGTCTCAAATGAGCAAAAATCCTAGGCAGAAAGTAAATCGCAAGACAGCAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 90 bp CTGTTGATTTCCCCCAAGTCACAACTTATAACACCTTGGCAATCTTaGACAGAGCTTTTAAAGCCATTCCCATCTTCAATAGTAGTCTCA +
Preference number: 6 (lower is better)
Translates to: LLISPKSQLITPWQS*TELLKPFPSSIVVS
Trigger: TGAGACTACTATTGAAGATGGGAATGGCTTTAAAAGCTCTGTCAAAGATTGCCAAGGTGTTATAAGTTGTGACTTGGGGGAAATCAACAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS TCA 72 bp CTTGCATTGATTACTCCGCCTTTGTTTCTTGTTAGCTaGCAGGAAAGAAGAACTTTGATGGAACTCAGAAAG +
Preference number: 6 (lower is better)
Translates to: LALITPPLFLVS*QERRTLMELRK
Trigger: CTTTCTGAGTTCCATCAAAGTTCTTCTTTCCTGTCAGCTAACAAGAAACAAAGGCGGAGTAATCAATGCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS TCA 72 bp TCTGACACAGGTCAAATTTACCATCTTGAAGGAATTTaGCTGAATGTCTGGAGAAAGGGTTTGCTTCCTCTT +
Preference number: 6 (lower is better)
Translates to: SDTGQIYHLEGI*LNVWRKGLLPL
Trigger: AAGAGGAAGCAAACCCTTTCTCCAGACATTCAGTCAAATTCCTTCAAGATGGTAAATTTGACCTGTGTCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CCA 72 bp AAGAGCATTTCAGACTTATATGGCTCTGCACTATCTTaGTTACAAAGAGCAGGCATATCAGACTCACTTAAG +
Preference number: 6 (lower is better)
Translates to: KSISDLYGSALS*LQRAGISDSLK
Trigger: CTTAAGTGAGTCTGATATGCCTGCTCTTTGTAACCAAGATAGTGCAGAGCCATATAAGTCTGAAATGCTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 72 bp AGTGTTATGAAAATGAAAGTTGTCAGTTTTCTGCACTaGCTCCATGCGCTTTACATAAGGCTCACTGGAAGA +
Preference number: 6 (lower is better)
Translates to: SVMKMKVVSFLH*LHALYIRLTGR
Trigger: TCTTCCAGTGAGCCTTATGTAAAGCGCATGGAGCAAGTGCAGAAAACTGACAACTTTCATTTTCATAACACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 72 bp TCCCCCAAGTCACAACTTATAACACCTTGGCAATCTTaGACAGAGCTTTTAAAGCCATTCCCATCTTCAATA +
Preference number: 6 (lower is better)
Translates to: SPKSQLITPWQS*TELLKPFPSSI
Trigger: TATTGAAGATGGGAATGGCTTTAAAAGCTCTGTCAAAGATTGCCAAGGTGTTATAAGTTGTGACTTGGGGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 72 bp ACAGGAAAGAAGAACTTTGATGGAACTCAGAAAGACTaGTCGTTTCAATTGCAGCTAACAAATTATTGGCCA +
Preference number: 6 (lower is better)
Translates to: TGKKNFDGTQKD*SFQLQLTNYWP
Trigger: TGGCCAATAATTTGTTAGCTGCAATTGAAACGAGCAGTCTTTCTGAGTTCCATCAAAGTTCTTCTTTCCTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 72 bp GTGGTTACTTTATCTGCTTGGGTTTGGAAGGGAAAGTaGCCTTTTTCTAGGAAGTGCATATCTTTATCATTG +
Preference number: 6 (lower is better)
Translates to: VVTLSAWVWKGK*PFSRKCISLSL
Trigger: CAATGATAAAGATATGCACTTCCTAGAAAAAGGCAACTTTCCCTTCCAAACCCAAGCAGATAAAGTAACCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS GCA 72 bp TGGTTACTTTATCTGCTTGGGTTTGGAAGGGAAAGTTaGCTTTTTCTAGGAAGTGCATATCTTTATCATTGT +
Preference number: 6 (lower is better)
Translates to: WLLYLLGFGRES*LFLGSAYLYHC
Trigger: ACAATGATAAAGATATGCACTTCCTAGAAAAAGGCAACTTTCCCTTCCAAACCCAAGCAGATAAAGTAACCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 72 bp GAAAGACTGCTCGTTTCAATTGCAGCTAACAAATTATaGGCCACATGTGATTCTATCTCTTTAAGCTTCTCA +
Preference number: 6 (lower is better)
Translates to: ERLLVSIAANKL*ATCDSISLSFS
Trigger: TGAGAAGCTTAAAGAGATAGAATCACATGTGGCCAATAATTTGTTAGCTGCAATTGAAACGAGCAGTCTTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 72 bp AACTTTGATGGAACTCAGAAAGACTGCTCGTTTCAATaGCAGCTAACAAATTATTGGCCACATGTGATTCTA +
Preference number: 6 (lower is better)
Translates to: NFDGTQKDCSFQ*QLTNYWPHVIL
Trigger: TAGAATCACATGTGGCCAATAATTTGTTAGCTGCAATTGAAACGAGCAGTCTTTCTGAGTTCCATCAAAGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 90 bp TGGAACTCAGAAAGACTGCTCGTTTCAATTGCAGCTAACAAATTATaGGCCACATGTGATTCTATCTCTTTAAGCTTCTCATTCAAGTTA +
Preference number: 6 (lower is better)
Translates to: WNSERLLVSIAANKL*ATCDSISLSFSFKL
Trigger: TAACTTGAATGAGAAGCTTAAAGAGATAGAATCACATGTGGCCAATAATTTGTTAGCTGCAATTGAAACGAGCAGTCTTTCTGAGTTCCA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 90 bp GATACCAAAGAAGTAGTATCAGGTGAGGTCTTTGATATAATTCTGTaGCTACACTTTGTATTCCATTTATCATCAGCACCATCATCATCA +
Preference number: 6 (lower is better)
Translates to: DTKEVVSGEVFDIIL*LHFVFHLSSAPSSS
Trigger: TGATGATGATGGTGCTGATGATAAATGGAATACAAAGTGTAGCAACAGAATTATATCAAAGACCTCACCTGATACTACTTCTTTGGTATC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2
CDS CAA 72 bp GAAGTAGTATCAGGTGAGGTCTTTGATATAATTCTGTaGCTACACTTTGTATTCCATTTATCATCAGCACCA +
Preference number: 6 (lower is better)
Translates to: EVVSGEVFDIIL*LHFVFHLSSAP
Trigger: TGGTGCTGATGATAAATGGAATACAAAGTGTAGCAACAGAATTATATCAAAGACCTCACCTGATACTACTTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179944.2