Pregenerated sensors for SGO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023940Ensembl transcript IDs: ENSMUST00000024736.14
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGAAGTGGATTTTTGTTTGTTTGGTTTTTGAGATCCGTAGTACCTaGCTCAGCCTCTATATTGCTGAAATTACATGTATGCAACATATC | + |
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Preference number: 1 (lower is better) Translates to: RKWIFVCLVFEIRST*LSLYIAEITCMQHI Trigger: GATATGTTGCATACATGTAATTTCAGCAATATAGAGGCTGAGTCAGGTACTACGGATCTCAAAAACCAAACAAACAAAAATCCACTTCCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| 3UTR-3UTR TCA 90 bp | TCACAACAGTTACCTTGTTCCAGAACCCAATTCATTAATTCTCTTAATCACCATTCCAAGAGACCCTCCTaGTCAGAGCCTGGTAGAGGT | + |
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Preference number: 2 (lower is better) Translates to: SQQLPCSRTQFINSLNHHSKRPS*SEPGRG Trigger: ACCTCTACCAGGCTCTGATCAGGAGGGTCTCTTGGA...ATGGTGATTAAGAGAATTAATGAATTGGGTTCTGGAACAAGGTAACTGTTGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| 3UTR-3UTR CCA 90 bp | GCTGACCTACGAAGTAGCCATTTAAATGTCTATAGCAGGAAGTGGATTTTTGTTAATCTCCTGTTTGAGTaGTATTTATCTATCCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: ADLRSSHLNVYSRKWIFVNLLFE*YLSIPG Trigger: CCCAGGGATAGATAAATACCACTCAAACAGGAGATT...AACAAAAATCCACTTCCTGCTATAGACATTTAAATGGCTACTTCGTAGGTCAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| 3UTR CAA 90 bp | TTTGTTTGGTTTTTGAGATCCGTAGTACCTGACTCAGCCTCTATATaGCTGAAATTACATGTATGCAACATATCAGCCTTTGGAAAGCTT | + |
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Preference number: 2 (lower is better) Translates to: FVWFLRSVVPDSASI*LKLHVCNISAFGKL Trigger: AAGCTTTCCAAAGGCTGATATGTTGCATACATGTAATTTCAGCAATATAGAGGCTGAGTCAGGTACTACGGATCTCAAAAACCAAACAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| 3UTR TCA 72 bp | TGTAAGGCTGTGATGGGCGAGAGGGGTGCACGTGAGTaGCAGAGCCACACTTTCAGTTTGATGGTAAATGTA | + |
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Preference number: 3 (lower is better) Translates to: CKAVMGERGARE*QSHTFSLMVNV Trigger: TACATTTACCATCAAACTGAAAGTGTGGCTCTGTCACTCACGTGCACCCCTCTCGCCCATCACAGCCTTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| 3UTR TCA 72 bp | CATAGGAGACAAACGTTCTTCCGATTTAATGAAAATTaGAATGCCTTGATGTTGGCCCTGGAGGCTTCAGTT | + |
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Preference number: 3 (lower is better) Translates to: HRRQTFFRFNEN*NALMLALEASV Trigger: AACTGAAGCCTCCAGGGCCAACATCAAGGCATTTCAATTTTCATTAAATCGGAAGAACGTTTGTCTCCTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| 3UTR-3UTR CAA 90 bp | TCACATATCAAAGCCAGAAGCCCCTTTATTCACACCTTTATTTACACTGTAGACTCTACGATGCAAGTTTaGTACTCTGCAATTCTCCTG | + |
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Preference number: 3 (lower is better) Translates to: SHIKARSPFIHTFIYTVDSTMQV*YSAILL Trigger: CAGGAGAATTGCAGAGTACAAAACTTGCATCGTAGA...GTCTACAGTGTAAATAAAGGTGTGAATAAAGGGGCTTCTGGCTTTGATATGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| 3UTR CCA 72 bp | CTACGAAGTAGCCATTTAAATGTCTATAGCAGGAAGTaGATTTTTGTTTGTTTGGTTTTTGAGATCCGTAGT | + |
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Preference number: 3 (lower is better) Translates to: LRSSHLNVYSRK*IFVCLVFEIRS Trigger: ACTACGGATCTCAAAAACCAAACAAACAAAAATCCACTTCCTGCTATAGACATTTAAATGGCTACTTCGTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CCA 90 bp | ACAAATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAGTCAGAGCCACTGCTaGGCTGTCTTCACGCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: TNLMGRKGEPGKTEEVPASQSHC*AVFTPL Trigger: AAGCGGCGTGAAGACAGCCCAGCAGTGGCTCTGACT...AGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CCA 90 bp | ACAAATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAGTAGGAGCTGTAGATaGCAGCACCTCCTTCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: TNLMGRKGEPGKTEEVPASRSCR*QHLLPL Trigger: GAGAGGAAGGAGGTGCTGCCATCTACAGCTCCTACT...AGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| 3UTR CAA 72 bp | GGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAAGTaGGGAGTGGTAAAGGCCAGAAAGGAAGATAATCAA | + |
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Preference number: 4 (lower is better) Translates to: GEPGKTEEVPAK*GVVKARKEDNQ Trigger: TTGATTATCTTCCTTTCTGGCCTTTACCACTCCCAACTTAGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR TCA 90 bp | ACAAATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAGAAACACAAGTCCGTaGAAGGGTCCCCTCTTCTTA | + |
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Preference number: 4 (lower is better) Translates to: TNLMGRKGEPGKTEEVPARNTSP*KGPLFL Trigger: TAAGAAGAGGGGACCCTTTCACGGACTTGTGTTTCT...AGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR GCA 90 bp | AATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAAGAACTTCCAGAGACTGTaGCACTCTTGGACTGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: NLMGRKGEPGKTEEVPAKNFQRL*HSWTGF Trigger: AAAGCCAGTCCAAGAGTGGCACAGTCTCTGGAAGTT...CTTAGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CCA 90 bp | GCTGACCTACGAAGTAGCCATTTAAATGTCTATAGCAGGAAGTGGATTTTTGTTAGTCTCGCAAGCGCTTaGAGGGAGGCAGGTAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: ADLRSSHLNVYSRKWIFVSLASA*REAGRG Trigger: ACCTCTACCTGCCTCCCTCCAAGCGCTTGCGAGACT...AACAAAAATCCACTTCCTGCTATAGACATTTAAATGGCTACTTCGTAGGTCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR TCA 90 bp | AATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAAGACTGCAGGATATTGGTaGCATCCTTTAGGCTACAAC | + |
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Preference number: 4 (lower is better) Translates to: NLMGRKGEPGKTEEVPAKTAGYW*HPLGYN Trigger: GTTGTAGCCTAAAGGATGTCACCAATATCCTGCAGT...CTTAGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR GCA 90 bp | ACAAATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTTTCACTCTAGGACACTaGAGGATATTGGTGACATCC | + |
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Preference number: 4 (lower is better) Translates to: TNLMGRKGEPGKTEEVPAFTLGH*RILVTS Trigger: GGATGTCACCAATATCCTGCAGTGTCCTAGAGTGAA...AGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CCA 90 bp | ACAAATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTCAGGACTTGGTTCTGTaGTTTGGTAAGGACAATCAG | + |
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Preference number: 4 (lower is better) Translates to: TNLMGRKGEPGKTEEVPAQDLVL*FGKDNQ Trigger: CTGATTGTCCTTACCAAACCACAGAACCAAGTCCTG...AGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR TCA 90 bp | AATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAAGCGTCCTTTCCAGTTCTaGGTAGTTTCTTCACTTTGT | + |
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Preference number: 4 (lower is better) Translates to: NLMGRKGEPGKTEEVPAKRPFQF*VVSSLC Trigger: ACAAAGTGAAGAAACTACTCAGAACTGGAAAGGACG...CTTAGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR GCA 90 bp | GCTGACCTACGAAGTAGCCATTTAAATGTCTATAGCAGGAAGTGGATTTTTGTTTGGTCGTATTGTCAATaGTGGAGACCACGTCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: ADLRSSHLNVYSRKWIFVWSYCQ*WRPRLR Trigger: CCTCAGACGTGGTCTCCAGCATTGACAATACGACCA...AACAAAAATCCACTTCCTGCTATAGACATTTAAATGGCTACTTCGTAGGTCAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR GCA 90 bp | AATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAAGGTAGGGGGTAAACCCTaGTTATCTTTGTTTTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: NLMGRKGEPGKTEEVPAKVGGKP*LSLFLF Trigger: GAACAAAAACAAAGATAAGCAGGGTTTACCCCCTAC...CTTAGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR TCA 90 bp | GCTGACCTACGAAGTAGCCATTTAAATGTCTATAGCAGGAAGTGGATTTTTGTTTTCTCAGTTGCAGGATaGCATCCTGTGCTTCTCTCA | + |
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Preference number: 4 (lower is better) Translates to: ADLRSSHLNVYSRKWIFVFSVAG*HPVLLS Trigger: TGAGAGAAGCACAGGATGTCATCCTGCAACTGAGAA...AACAAAAATCCACTTCCTGCTATAGACATTTAAATGGCTACTTCGTAGGTCAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR TCA 90 bp | TCGATACACAGTTTACAGAAAGAATCAATGACAGAAGGGATCCTCACCCACTTAGCTCTTTATAGCTTTTaGTGGTGCTACACCTGCGTT | + |
|
Preference number: 4 (lower is better) Translates to: SIHSLQKESMTEGILTHLALYSF*WCYTCV Trigger: AACGCAGGTGTAGCACCATCAAAAGCTATAAAGAGC...TAAGTGGGTGAGGATCCCTTCTGTCATTGATTCTTTCTGTAAACTGTGTATCGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR GCA 90 bp | ACAAATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTTTTCGTGCACGTTTATaGTTGCTTTCTATTTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: TNLMGRKGEPGKTEEVPAFRARL*LLSICS Trigger: TGAACAAATAGAAAGCAAGCATAAACGTGCACGAAA...AGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CCA 90 bp | TCGATACACAGTTTACAGAAAGAATCAATGACAGAAGGGATCCTCACCCACTTAATTTGCATCTCTGCTTaGTTCTTCTTTGCTCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: SIHSLQKESMTEGILTHLICISA*FFFALL Trigger: GAGCAGAGCAAAGAAGAACCAAGCAGAGATGCAAAT...TAAGTGGGTGAGGATCCCTTCTGTCATTGATTCTTTCTGTAAACTGTGTATCGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CCA 90 bp | GCTGACCTACGAAGTAGCCATTTAAATGTCTATAGCAGGAAGTGGATTTTTGTTCCTCTCTTTCCCATCTaGGTACTGAAGTCCTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: ADLRSSHLNVYSRKWIFVPLFPI*VLKSSF Trigger: AAAAGAGGACTTCAGTACCCAGATGGGAAAGAGAGG...AACAAAAATCCACTTCCTGCTATAGACATTTAAATGGCTACTTCGTAGGTCAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR GCA 90 bp | GCTGACCTACGAAGTAGCCATTTAAATGTCTATAGCAGGAAGTGGATTTTTGTTCATTCTTTTCTCAGTTaGAGGATGACATCCTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: ADLRSSHLNVYSRKWIFVHSFLS*RMTSCA Trigger: AGCACAGGATGTCATCCTGCAACTGAGAAAAGAATG...AACAAAAATCCACTTCCTGCTATAGACATTTAAATGGCTACTTCGTAGGTCAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR GCA 90 bp | TCGATACACAGTTTACAGAAAGAATCAATGACAGAAGGGATCCTCACCCACTTAATGAGGATTTTGATTTaGATCTCTGCTTGGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SIHSLQKESMTEGILTHLMRILI*ISAWFF Trigger: GAAGAACCAAGCAGAGATGCAAATCAAAATCCTCAT...TAAGTGGGTGAGGATCCCTTCTGTCATTGATTCTTTCTGTAAACTGTGTATCGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR GCA 90 bp | TCACAACAGTTACCTTGTTCCAGAACCCAATTCATTAATTCTCTTAATCACCATTCTTCAACAGCAATTTaGTGTAAGGACTTCCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: SQQLPCSRTQFINSLNHHSSTAI*CKDFPD Trigger: GTCAGGGAAGTCCTTACAGCAAATTGCTGTTGAAGA...ATGGTGATTAAGAGAATTAATGAATTGGGTTCTGGAACAAGGTAACTGTTGTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR GCA 90 bp | GCTGACCTACGAAGTAGCCATTTAAATGTCTATAGCAGGAAGTGGATTTTTGTTTTTGATTTGCATCTCTaGTTGGTTCTTCTTTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: ADLRSSHLNVYSRKWIFVFDLHL*LVLLCS Trigger: AGAGCAAAGAAGAACCAAGCAGAGATGCAAATCAAA...AACAAAAATCCACTTCCTGCTATAGACATTTAAATGGCTACTTCGTAGGTCAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| 3UTR CAA 72 bp | TTTTTGAGATCCGTAGTACCTGACTCAGCCTCTATATaGCTGAAATTACATGTATGCAACATATCAGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: FLRSVVPDSASI*LKLHVCNISAF Trigger: AAAGGCTGATATGTTGCATACATGTAATTTCAGCAATATAGAGGCTGAGTCAGGTACTACGGATCTCAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CCA 90 bp | TCACAACAGTTACCTTGTTCCAGAACCCAATTCATTAATTCTCTTAATCACCATGAACATAAGCTAATTTaGTCTTTGTTCCACAGACAA | + |
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Preference number: 4 (lower is better) Translates to: SQQLPCSRTQFINSLNHHEHKLI*SLFHRQ Trigger: TTGTCTGTGGAACAAAGACCAAATTAGCTTATGTTC...ATGGTGATTAAGAGAATTAATGAATTGGGTTCTGGAACAAGGTAACTGTTGTGA 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CCA 90 bp | CCTGCGTTTAGTCAGAGCCACTGCTGGGCTGTCTTCACGCCGCTTTaGAGGCAGAGAAGGCTTCCTGATCTTCACTCTAGGACACTGCAG | + |
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Preference number: 5 (lower is better) Translates to: PAFSQSHCWAVFTPL*RQRRLPDLHSRTLQ Trigger: CTGCAGTGTCCTAGAGTGAAGATCAGGAAGCCTTCTCTGCCTCCAAAGCGGCGTGAAGACAGCCCAGCAGTGGCTCTGACTAAACGCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS TCA 90 bp | GTACTGAAGTCCTCTTTTAGACCGAGGCCTGGTAACTGCTCTCTCTaGCTCTCTGTAGTCTCGCAAGCGCTTGGAGGGAGGCAGGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: VLKSSFRPRPGNCSL*LSVVSQALGGRQVE Trigger: CTCTACCTGCCTCCCTCCAAGCGCTTGCGAGACTACAGAGAGTCAGAGAGAGCAGTTACCAGGCCTCGGTCTAAAAGAGGACTTCAGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CCA 90 bp | ATAGCTTTTGATGGTGCTACACCTGCGTTTAGTCAGAGCCACTGCTaGGCTGTCTTCACGCCGCTTTGGAGGCAGAGAAGGCTTCCTGAT | + |
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Preference number: 5 (lower is better) Translates to: IAFDGATPAFSQSHC*AVFTPLWRQRRLPD Trigger: ATCAGGAAGCCTTCTCTGCCTCCAAAGCGGCGTGAAGACAGCCCAGCAGTGGCTCTGACTAAACGCAGGTGTAGCACCATCAAAAGCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CCA 90 bp | AGTAGGAGCTGTAGATGGCAGCACCTCCTTCCTCTCTTTCCCATCTaGGTACTGAAGTCCTCTTTTAGACCGAGGCCTGGTAACTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: SRSCRWQHLLPLFPI*VLKSSFRPRPGNCS Trigger: AGAGCAGTTACCAGGCCTCGGTCTAAAAGAGGACTTCAGTACCCAGATGGGAAAGAGAGGAAGGAGGTGCTGCCATCTACAGCTCCTACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS GCA 90 bp | TGGAGGGAGGCAGGTAGAGGTCATCAGACTCATCCTCAGAGGTACTaGATTCGAGGTCACTCACTTCTGAGTTGCTGCTATCCGTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: WREAGRGHQTHPQRY*IRGHSLLSCCYPFL Trigger: AAGAAACGGATAGCAGCAACTCAGAAGTGAGTGACCTCGAATGCAGTACCTCTGAGGATGAGTCTGATGACCTCTACCTGCCTCCCTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CCA 90 bp | TTTCTTCAACAGCAATTTGCTGTAAGGACTTCCCTGACAAGTCCCTaGTCGTATTGTCAATGCTGGAGACCACGTCTGAGGGACGTCCTT | + |
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Preference number: 5 (lower is better) Translates to: FLQQQFAVRTSLTSP*SYCQCWRPRLRDVL Trigger: AAGGACGTCCCTCAGACGTGGTCTCCAGCATTGACAATACGACCAGGGACTTGTCAGGGAAGTCCTTACAGCAAATTGCTGTTGAAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | ACAAATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTGCATTCTTTTCTCAGTaGCAGGATGACATCCTGTGC | + |
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Preference number: 5 (lower is better) Translates to: TNLMGRKGEPGKTEEVPAAFFSQ*QDDILC Trigger: GCACAGGATGTCATCCTGCAACTGAGAAAAGAATGC...AGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | ACAAATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTGGACACTGCAGGATATaGGTGACATCCTTTAGGCTA | + |
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Preference number: 5 (lower is better) Translates to: TNLMGRKGEPGKTEEVPAGHCRI*VTSFRL Trigger: TAGCCTAAAGGATGTCACCAATATCCTGCAGTGTCC...AGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS GCA 90 bp | TACGGTTACTTCTCTACATCTACTTCCTTTAACTTCCAGAGACTGTaGCACTCTTGGACTGGCTTTACAATCCTCCAAAGTCGTGGAGTG | + |
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Preference number: 5 (lower is better) Translates to: YGYFSTSTSFNFQRL*HSWTGFTILQSRGV Trigger: CACTCCACGACTTTGGAGGATTGTAAAGCCAGTCCAAGAGTGGCACAGTCTCTGGAAGTTAAAGGAAGTAGATGTAGAGAAGTAACCGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | AATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAAGGTCTTCAAGGGTATCTaGAAAGGACCTTTTCTGACA | + |
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Preference number: 5 (lower is better) Translates to: NLMGRKGEPGKTEEVPAKVFKGI*KGPFLT Trigger: TGTCAGAAAAGGTCCTTTCAAGATACCCTTGAAGAC...CTTAGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | TCACATATCAAAGCCAGAAGCCCCTTTATTCACACCTTTATTTACACTGTAGACAAGTCCCTGGTCGTATaGTCAATGCTGGAGACCACG | + |
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Preference number: 5 (lower is better) Translates to: SHIKARSPFIHTFIYTVDKSLVV*SMLETT Trigger: CGTGGTCTCCAGCATTGACAATACGACCAGGGACTT...GTCTACAGTGTAAATAAAGGTGTGAATAAAGGGGCTTCTGGCTTTGATATGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | AATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAAGCTGCTATCCGTTTCTTaGTTGCAGCCATTGTTCATT | + |
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Preference number: 5 (lower is better) Translates to: NLMGRKGEPGKTEEVPAKLLSVS*LQPLFI Trigger: AATGAACAATGGCTGCAACAAAGAAACGGATAGCAG...CTTAGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | AATCTAATGGGAAGAAAAGGGGAACCAGGGAAGACAGAAGAGGTTCCAGCTAAGAATGAGGATTTTGATTaGCATCTCTGCTTGGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: NLMGRKGEPGKTEEVPAKNEDFD*HLCLVL Trigger: AAGAACCAAGCAGAGATGCAAATCAAAATCCTCATT...CTTAGCTGGAACCTCTTCTGTCTTCCCTGGTTCCCCTTTTCTTCCCATTAGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | TCGATACACAGTTTACAGAAAGAATCAATGACAGAAGGGATCCTCACCCACTTATCACTCACTTCTGAGTaGCTGCTATCCGTTTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: SIHSLQKESMTEGILTHLSLTSE*LLSVSL Trigger: CAAAGAAACGGATAGCAGCAACTCAGAAGTGAGTGA...TAAGTGGGTGAGGATCCCTTCTGTCATTGATTCTTTCTGTAAACTGTGTATCGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | TCACATATCAAAGCCAGAAGCCCCTTTATTCACACCTTTATTTACACTGTAGACGATTTGCATCTCTGCTaGGTTCTTCTTTGCTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: SHIKARSPFIHTFIYTVDDLHLC*VLLCSA Trigger: AGCAGAGCAAAGAAGAACCAAGCAGAGATGCAAATC...GTCTACAGTGTAAATAAAGGTGTGAATAAAGGGGCTTCTGGCTTTGATATGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | TCGATACACAGTTTACAGAAAGAATCAATGACAGAAGGGATCCTCACCCACTTATCCTCAATGAGGATTTaGATTTGCATCTCTGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: SIHSLQKESMTEGILTHLSSMRI*ICISAW Trigger: CCAAGCAGAGATGCAAATCAAAATCCTCATTGAGGA...TAAGTGGGTGAGGATCCCTTCTGTCATTGATTCTTTCTGTAAACTGTGTATCGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS GCA 90 bp | CTCCTCAATGAGGATTTTGATTTGCATCTCTGCTTGGTTCTTCTTTaGTCTGCTCTTCTTTTTCGTGCACGTTTATGCTTGCTTTCTATT | + |
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Preference number: 5 (lower is better) Translates to: LLNEDFDLHLCLVLL*SALLFRARLCLLSI Trigger: AATAGAAAGCAAGCATAAACGTGCACGAAAAAGAAGAGCAGAGCAAAGAAGAACCAAGCAGAGATGCAAATCAAAATCCTCATTGAGGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | TCACAACAGTTACCTTGTTCCAGAACCCAATTCATTAATTCTCTTAATCACCATCTGCTTGGTTCTTCTTaGCTCTGCTCTTCTTTTTCG | + |
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Preference number: 5 (lower is better) Translates to: SQQLPCSRTQFINSLNHHLLGSS*LCSSFS Trigger: CGAAAAAGAAGAGCAGAGCAAAGAAGAACCAAGCAG...ATGGTGATTAAGAGAATTAATGAATTGGGTTCTGGAACAAGGTAACTGTTGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | GCTGACCTACGAAGTAGCCATTTAAATGTCTATAGCAGGAAGTGGATTTTTGTTAAACCCTGCTTATCTTaGTTTTTGTTCCCCTTACTC | + |
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Preference number: 5 (lower is better) Translates to: ADLRSSHLNVYSRKWIFVKPCLS*FLFPLL Trigger: GAGTAAGGGGAACAAAAACAAAGATAAGCAGGGTTT...AACAAAAATCCACTTCCTGCTATAGACATTTAAATGGCTACTTCGTAGGTCAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CCA 90 bp | TCAGTAATCTTTGCTGGGTTAATCAGTCTAGAACATAAGCTAATTTaGTCTTTGTTCCACAGACAAACATTTTCAAGTCTGTGCAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: SVIFAGLISLEHKLI*SLFHRQTFSSLCRV Trigger: AACCCTGCACAGACTTGAAAATGTTTGTCTGTGGAACAAAGACCAAATTAGCTTATGTTCTAGACTGATTAACCCAGCAAAGATTACTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS-3UTR CAA 90 bp | TCACAACAGTTACCTTGTTCCAGAACCCAATTCATTAATTCTCTTAATCACCATCTATCCGTTTCTTTGTaGCAGCCATTGTTCATTTTT | + |
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Preference number: 5 (lower is better) Translates to: SQQLPCSRTQFINSLNHHLSVSL*QPLFIF Trigger: AAAAATGAACAATGGCTGCAACAAAGAAACGGATAG...ATGGTGATTAAGAGAATTAATGAATTGGGTTCTGGAACAAGGTAACTGTTGTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CCA 72 bp | AGTCAGAGCCACTGCTGGGCTGTCTTCACGCCGCTTTaGAGGCAGAGAAGGCTTCCTGATCTTCACTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: SQSHCWAVFTPL*RQRRLPDLHSR Trigger: CCTAGAGTGAAGATCAGGAAGCCTTCTCTGCCTCCAAAGCGGCGTGAAGACAGCCCAGCAGTGGCTCTGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS TCA 72 bp | GTCCCTGGTCGTATTGTCAATGCTGGAGACCACGTCTaGGGGACGTCCTTTCCAGTTCTGAGTAGTTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: VPGRIVNAGDHV*GTSFPVLSSFF Trigger: GAAGAAACTACTCAGAACTGGAAAGGACGTCCCTCAGACGTGGTCTCCAGCATTGACAATACGACCAGGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS GCA 72 bp | GCAGGTAGAGGTCATCAGACTCATCCTCAGAGGTACTaGATTCGAGGTCACTCACTTCTGAGTTGCTGCTAT | + |
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Preference number: 6 (lower is better) Translates to: AGRGHQTHPQRY*IRGHSLLSCCY Trigger: ATAGCAGCAACTCAGAAGTGAGTGACCTCGAATGCAGTACCTCTGAGGATGAGTCTGATGACCTCTACCTGC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CAA 72 bp | TCAGAGGTACTGCATTCGAGGTCACTCACTTCTGAGTaGCTGCTATCCGTTTCTTTGTTGCAGCCATTGTTC | + |
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Preference number: 6 (lower is better) Translates to: SEVLHSRSLTSE*LLSVSLLQPLF Trigger: GAACAATGGCTGCAACAAAGAAACGGATAGCAGCAACTCAGAAGTGAGTGACCTCGAATGCAGTACCTCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CAA 72 bp | TTAGTGGGTACTTGGCCCGGTGCAACAATAAAGGACTaGCGTTTCCCAATCCCCGCCAAATTTTTATTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LVGTWPGATIKD*RFPIPAKFLFL Trigger: AAGGAATAAAAATTTGGCGGGGATTGGGAAACGCAAGTCCTTTATTGTTGCACCGGGCCAAGTACCCACTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CCA 72 bp | CTTGGACTGGCTTTACAATCCTCCAAAGTCGTGGAGTaGCTTATATTACTAAAATCTTTCCTTAAATGGCGA | + |
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Preference number: 6 (lower is better) Translates to: LGLALQSSKVVE*LILLKSFLKWR Trigger: TCGCCATTTAAGGAAAGATTTTAGTAATATAAGCCACTCCACGACTTTGGAGGATTGTAAAGCCAGTCCAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CAA 90 bp | ATCTTTGCTGGGTTAATCAGTCTAGAACATAAGCTAATTTGGTCTTaGTTCCACAGACAAACATTTTCAAGTCTGTGCAGGGTTACGGTT | + |
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Preference number: 6 (lower is better) Translates to: IFAGLISLEHKLIWS*FHRQTFSSLCRVTV Trigger: AACCGTAACCCTGCACAGACTTGAAAATGTTTGTCTGTGGAACAAAGACCAAATTAGCTTATGTTCTAGACTGATTAACCCAGCAAAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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| CDS CAA 72 bp | GGGTTAATCAGTCTAGAACATAAGCTAATTTGGTCTTaGTTCCACAGACAAACATTTTCAAGTCTGTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GLISLEHKLIWS*FHRQTFSSLCR Trigger: CCTGCACAGACTTGAAAATGTTTGTCTGTGGAACAAAGACCAAATTAGCTTATGTTCTAGACTGATTAACCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024736.14 |
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