Pregenerated sensors for SGMS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050931Ensembl transcript IDs: ENSMUST00000090246.5, ENSMUST00000126569.2
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGGTAGGCATGGAAACACACCTGCAATCCCAGCACCCAGGGGGCTaGTACAGGAGGGCTGAAGGTTGGAGGCCAATCTGGGCTACACAG | + |
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Preference number: 1 (lower is better) Translates to: WVGMETHLQSQHPGG*YRRAEGWRPIWATQ Trigger: CTGTGTAGCCCAGATTGGCCTCCAACCTTCAGCCCTCCTGTATCAGCCCCCTGGGTGCTGGGATTGCAGGTGTGTTTCCATGCCTACCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR CCA 90 bp | CTGTTCACACTGGTTTCAGCCTGTGCTGGTGCGGTTAACAAGCCTTaGGCTCCCGGCAGGCAGCATCTAACGGGTATAGCAGGAAAAGCC | + |
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Preference number: 1 (lower is better) Translates to: LFTLVSACAGAVNKP*APGRQHLTGIAGKA Trigger: GGCTTTTCCTGCTATACCCGTTAGATGCTGCCTGCCGGGAGCCCAAGGCTTGTTAACCGCACCAGCACAGGCTGAAACCAGTGTGAACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR GCA 90 bp | AGTCAGTTCTCTGAAAATAAATATAAAGCCGCACGTGCCTTCGGTTaGAGCACGGACTCTTTTGGTGTGAGAGCGGCTGCCGGGTTGGCA | + |
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Preference number: 1 (lower is better) Translates to: SQFSENKYKAARAFG*STDSFGVRAAAGLA Trigger: TGCCAACCCGGCAGCCGCTCTCACACCAAAAGAGTCCGTGCTGCAACCGAAGGCACGTGCGGCTTTATATTTATTTTCAGAGAACTGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR GCA 90 bp | CACAGGCGCCCGCTTGCGCCTTACCCACACTTAATGGGTAAAATCTaGATCTTAATGGGCAAAGAAAAGGTGCTGGTACCATGTCCTGCT | + |
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Preference number: 1 (lower is better) Translates to: HRRPLAPYPHLMGKI*ILMGKEKVLVPCPA Trigger: AGCAGGACATGGTACCAGCACCTTTTCTTTGCCCATTAAGATGCAGATTTTACCCATTAAGTGTGGGTAAGGCGCAAGCGGGCGCCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR GCA 90 bp | CCACCTGCAGGCTGCCCCTTACTAAGCTCTGTGGTGAAAACCCACTaGCATCAACTGACTGTATTTACACAGTGGCTGTATATATCCAGA | + |
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Preference number: 1 (lower is better) Translates to: PPAGCPLLSSVVKTH*HQLTVFTQWLYISR Trigger: TCTGGATATATACAGCCACTGTGTAAATACAGTCAGTTGATGGCAGTGGGTTTTCACCACAGAGCTTAGTAAGGGGCAGCCTGCAGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR CCA 90 bp | AGTGGAGGAGCTCAAACCCGGAGTCTCAGAGAACTCCAGTCCCATTaGGAAGGTTCAGGAAAAACATGTGTGTTCTATATTTGTGGACGT | + |
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Preference number: 1 (lower is better) Translates to: SGGAQTRSLRELQSH*EGSGKTCVFYICGR Trigger: ACGTCCACAAATATAGAACACACATGTTTTTCCTGAACCTTCCCAATGGGACTGGAGTTCTCTGAGACTCCGGGTTTGAGCTCCTCCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR GCA 90 bp | GCGGTTAACAAGCCTTGGGCTCCCGGCAGGCAGCATCTAACGGGTATAGCAGGAGCCCCACCTGCAGGCTaGCCCTTACTAAGCTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: AVNKPWAPGRQHLTGIAGAPPAG*PLLSSV Trigger: CACAGAGCTTAGTAAGGGGCAGCCTGCAGGTGGGGC...TCCTGCTATACCCGTTAGATGCTGCCTGCCGGGAGCCCAAGGCTTGTTAACCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR TCA 90 bp | GCGGTTAACAAGCCTTGGGCTCCCGGCAGGCAGCATCTAACGGGTATAGCAGGAGTGTGGTCTTCAGAGTaGGTTCCAGGACAGCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: AVNKPWAPGRQHLTGIAGVWSSE*VPGQPR Trigger: CCTTGGCTGTCCTGGAACTCACTCTGAAGACCACAC...TCCTGCTATACCCGTTAGATGCTGCCTGCCGGGAGCCCAAGGCTTGTTAACCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR CCA 90 bp | CTCGTCAGGCGGTGGTGGCATATGCCTTTAATCCTAGCATTCAGGAGGCAGAGGAGGAGGGCTGAAGGTTaGAGGCCAATCTGGGCTACA | + |
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Preference number: 2 (lower is better) Translates to: LVRRWWHMPLILAFRRQRRRAEG*RPIWAT Trigger: TGTAGCCCAGATTGGCCTCCAACCTTCAGCCCTCCT...CCTCTGCCTCCTGAATGCTAGGATTAAAGGCATATGCCACCACCGCCTGACGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR TCA 90 bp | TGTTCACACTGGTTTCAGCCTGTGCTGGTGCGGTTAACAAGCCTTGGGCTCCCGCCCACTGCCATCAACTaGCTGTATTTACACAGTGGC | + |
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Preference number: 2 (lower is better) Translates to: CSHWFQPVLVRLTSLGLPPTAIN*LYLHSG Trigger: GCCACTGTGTAAATACAGTCAGTTGATGGCAGTGGG...CGGGAGCCCAAGGCTTGTTAACCGCACCAGCACAGGCTGAAACCAGTGTGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR TCA 90 bp | GCGGTTAACAAGCCTTGGGCTCCCGGCAGGCAGCATCTAACGGGTATAGCAGGATGTGTCTCTTTCACATaGCCTTGCAATACTCTTTCT | + |
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Preference number: 2 (lower is better) Translates to: AVNKPWAPGRQHLTGIAGCVSFT*PCNTLS Trigger: AGAAAGAGTATTGCAAGGTCATGTGAAAGAGACACA...TCCTGCTATACCCGTTAGATGCTGCCTGCCGGGAGCCCAAGGCTTGTTAACCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR GCA 90 bp | CTCGTCAGGCGGTGGTGGCATATGCCTTTAATCCTAGCATTCAGGAGGCAGAGGCAGGGATGTTCTCTATaGCATACCCATGAGAATGTA | + |
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Preference number: 2 (lower is better) Translates to: LVRRWWHMPLILAFRRQRQGCSL*HTHENV Trigger: TACATTCTCATGGGTATGGCATAGAGAACATCCCTG...CCTCTGCCTCCTGAATGCTAGGATTAAAGGCATATGCCACCACCGCCTGACGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR CAA 90 bp | TCGGCGTGTTCTTTGCCACCTCTTCAGAACTCCAGTGTGGGGGCTTaGTCATCAATGAACGAAGAGCTGCAGGAAAATATATGTTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: SACSLPPLQNSSVGA*SSMNEELQENICFL Trigger: CAAGAAACATATATTTTCCTGCAGCTCTTCGTTCATTGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGTGGCAAAGAACACGCCGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR TCA 90 bp | CGAAGCGTCTATCTGTATAAAAACTTATCTTTGGGTACTTCTGACATGATTTTCCAGCACCCAGGGGGCTaGTACAGGAGGGCTGAAGGT | + |
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Preference number: 2 (lower is better) Translates to: RSVYLYKNLSLGTSDMIFQHPGG*YRRAEG Trigger: ACCTTCAGCCCTCCTGTATCAGCCCCCTGGGTGCTG...GAAAATCATGTCAGAAGTACCCAAAGATAAGTTTTTATACAGATAGACGCTTCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR TCA 90 bp | CGAAGCGTCTATCTGTATAAAAACTTATCTTTGGGTACTTCTGACATGATTTTCGTGCACAGGGTGAAGTaGGTTGCTCAGCGGTGGTGC | + |
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Preference number: 2 (lower is better) Translates to: RSVYLYKNLSLGTSDMIFVHRVK*VAQRWC Trigger: GCACCACCGCTGAGCAACTCACTTCACCCTGTGCAC...GAAAATCATGTCAGAAGTACCCAAAGATAAGTTTTTATACAGATAGACGCTTCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR GCA 90 bp | CTTTCTTTGACTCAAATTCTGAGAACTTTCCCTTTGGGAAGGATAAGAATGTCTGCACAGGCGCCCGCTTaGGCCTTACCCACACTTAAT | + |
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Preference number: 2 (lower is better) Translates to: LSLTQILRTFPLGRIRMSAQAPA*ALPTLN Trigger: ATTAAGTGTGGGTAAGGCGCAAGCGGGCGCCTGTGC...AGACATTCTTATCCTTCCCAAAGGGAAAGTTCTCAGAATTTGAGTCAAAGAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR TCA 90 bp | CTTTCTTTGACTCAAATTCTGAGAACTTTCCCTTTGGGAAGGATAAGAATGTCTGAAAGAACGTGGAAGTaGAGGAAGGCGAGGAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: LSLTQILRTFPLGRIRMSERTWK*RKARRG Trigger: GCCTCTCCTCGCCTTCCTTCACTTCCACGTTCTTTC...AGACATTCTTATCCTTCCCAAAGGGAAAGTTCTCAGAATTTGAGTCAAAGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR TCA 90 bp | CTTTCTTTGACTCAAATTCTGAGAACTTTCCCTTTGGGAAGGATAAGAATGTCTAGTGTTTTGTTTCAGTaGGAGACTCGCAGAGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: LSLTQILRTFPLGRIRMSSVLFQ*ETRRAK Trigger: CTTTGCTCTGCGAGTCTCTCACTGAAACAAAACACT...AGACATTCTTATCCTTCCCAAAGGGAAAGTTCTCAGAATTTGAGTCAAAGAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR CAA 90 bp | ACAAGCCAGCGCTTACGAAGCGTCTATCTGTATAAAAACTTATCTTaGGGTACTTCTGACATGATTTTCAGTGTACAGATATCAAAGTCA | + |
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Preference number: 2 (lower is better) Translates to: TSQRLRSVYLYKNLS*GTSDMIFSVQISKS Trigger: TGACTTTGATATCTGTACACTGAAAATCATGTCAGAAGTACCCAAAGATAAGTTTTTATACAGATAGACGCTTCGTAAGCGCTGGCTTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR CAA 90 bp | ACGAATGATTGTGACATAAGAGGTAAATGTGACCTTCAACTTTCTTaGACTCAAATTCTGAGAACTTTCCCTTTGGGAAGGATAAGAATG | + |
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Preference number: 2 (lower is better) Translates to: TNDCDIRGKCDLQLS*TQILRTFPLGRIRM Trigger: CATTCTTATCCTTCCCAAAGGGAAAGTTCTCAGAATTTGAGTCAAAGAAAGTTGAAGGTCACATTTACCTCTTATGTCACAATCATTCGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR GCA 90 bp | CGAAGCGTCTATCTGTATAAAAACTTATCTTTGGGTACTTCTGACATGATTTTCATCGCTCCAATCTTTTaGATAAAATTTGGTCCACTT | + |
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Preference number: 2 (lower is better) Translates to: RSVYLYKNLSLGTSDMIFIAPIF*IKFGPL Trigger: AAGTGGACCAAATTTTATGCAAAAGATTGGAGCGAT...GAAAATCATGTCAGAAGTACCCAAAGATAAGTTTTTATACAGATAGACGCTTCG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR CAA 90 bp | TGCCATACCCATGAGAATGTAACCACCCCTTCCACTGGCTGCTCCCATGCTGTGATCACCCTAATGACCTaGCCCCACCTGCAGGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: CHTHENVTTPSTGCSHAVITLMT*PHLQAA Trigger: GGCAGCCTGCAGGTGGGGCAAGGTCATTAGGGTGAT...CACAGCATGGGAGCAGCCAGTGGAAGGGGTGGTTACATTCTCATGGGTATGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR TCA 72 bp | ATGGAAACACACCTGCAATCCCAGCACCCAGGGGGCTaGTACAGGAGGGCTGAAGGTTGGAGGCCAATCTGG | + |
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Preference number: 3 (lower is better) Translates to: METHLQSQHPGG*YRRAEGWRPIW Trigger: CCAGATTGGCCTCCAACCTTCAGCCCTCCTGTATCAGCCCCCTGGGTGCTGGGATTGCAGGTGTGTTTCCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR CCA 72 bp | CTGGTTTCAGCCTGTGCTGGTGCGGTTAACAAGCCTTaGGCTCCCGGCAGGCAGCATCTAACGGGTATAGCA | + |
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Preference number: 3 (lower is better) Translates to: LVSACAGAVNKP*APGRQHLTGIA Trigger: TGCTATACCCGTTAGATGCTGCCTGCCGGGAGCCCAAGGCTTGTTAACCGCACCAGCACAGGCTGAAACCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR GCA 72 bp | AGTGAAGGAAGGCGAGGAGAGGCTCGGCGTGTTCTTTaGCACCTCTTCAGAACTCCAGTGTGGGGGCTTTGT | + |
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Preference number: 3 (lower is better) Translates to: SEGRRGEARRVL*HLFRTPVWGLC Trigger: ACAAAGCCCCCACACTGGAGTTCTGAAGAGGTGGCAAAGAACACGCCGAGCCTCTCCTCGCCTTCCTTCACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR TCA 72 bp | TGGATGGCCACAAACCTGCCCAGGGATTGCAAGAGCTaGCTCTCAGCCAACCTTGTGTCCCCAGCAAAAAGC | + |
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Preference number: 3 (lower is better) Translates to: WMATNLPRDCKS*LSANLVSPAKS Trigger: GCTTTTTGCTGGGGACACAAGGTTGGCTGAGAGTCAGCTCTTGCAATCCCTGGGCAGGTTTGTGGCCATCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR CAA 90 bp | TGCCATACCCATGAGAATGTAACCACCCCTTCCACTGGCTGCTCCCATGCTGTGCAGAGAAACCCTGTCTaGAAAAACCAAAAGCCAACC | + |
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Preference number: 3 (lower is better) Translates to: CHTHENVTTPSTGCSHAVQRNPV*KNQKPT Trigger: GGTTGGCTTTTGGTTTTTCAAGACAGGGTTTCTCTG...CACAGCATGGGAGCAGCCAGTGGAAGGGGTGGTTACATTCTCATGGGTATGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR GCA 72 bp | TCTGAAAATAAATATAAAGCCGCACGTGCCTTCGGTTaGAGCACGGACTCTTTTGGTGTGAGAGCGGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: SENKYKAARAFG*STDSFGVRAAA Trigger: GGCAGCCGCTCTCACACCAAAAGAGTCCGTGCTGCAACCGAAGGCACGTGCGGCTTTATATTTATTTTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR GCA 72 bp | CTTAATGGGCAAAGAAAAGGTGCTGGTACCATGTCCTaGTGTGCCTGGGTAGGCATGGAAACACACCTGCAA | + |
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Preference number: 3 (lower is better) Translates to: LNGQRKGAGTMS*CAWVGMETHLQ Trigger: TTGCAGGTGTGTTTCCATGCCTACCCAGGCACAGCAGGACATGGTACCAGCACCTTTTCTTTGCCCATTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR GCA 72 bp | ACTAGCTTACAGGGACGAACCCAGGGATGTTCTCTATaGCATACCCATGAGAATGTAACCACCCCTTCCACT | + |
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Preference number: 3 (lower is better) Translates to: TSLQGRTQGCSL*HTHENVTTPST Trigger: AGTGGAAGGGGTGGTTACATTCTCATGGGTATGGCATAGAGAACATCCCTGGGTTCGTCCCTGTAAGCTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR CCA 72 bp | CTATATTTGTGGACGTTTTCCAGAAGCTCTATATTATaGGGAAAACCTTCCAACAGGAGCACAGGCGCCCGC | + |
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Preference number: 3 (lower is better) Translates to: LYLWTFSRSSIL*GKPSNRSTGAR Trigger: GCGGGCGCCTGTGCTCCTGTTGGAAGGTTTTCCCCATAATATAGAGCTTCTGGAAAACGTCCACAAATATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR GCA 72 bp | CCGCTTGCGCCTTACCCACACTTAATGGGTAAAATCTaGATCTTAATGGGCAAAGAAAAGGTGCTGGTACCA | + |
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Preference number: 3 (lower is better) Translates to: PLAPYPHLMGKI*ILMGKEKVLVP Trigger: TGGTACCAGCACCTTTTCTTTGCCCATTAAGATGCAGATTTTACCCATTAAGTGTGGGTAAGGCGCAAGCGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR CAA 90 bp | GTTTACCTGACTAAATGCAAAGTTTTCTGTTTGAAGGGTTCCCAACAATCAACAGGCTCGGCGTGTTCTTaGCCACCTCTTCAGAACTCC | + |
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Preference number: 3 (lower is better) Translates to: VYLTKCKVFCLKGSQQSTGSACS*PPLQNS Trigger: GGAGTTCTGAAGAGGTGGCAAAGAACACGCCGAGCC...TGTTGATTGTTGGGAACCCTTCAAACAGAAAACTTTGCATTTAGTCAGGTAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR CCA 72 bp | GCTCAAACCCGGAGTCTCAGAGAACTCCAGTCCCATTaGGAAGGTTCAGGAAAAACATGTGTGTTCTATATT | + |
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Preference number: 3 (lower is better) Translates to: AQTRSLRELQSH*EGSGKTCVFYI Trigger: AATATAGAACACACATGTTTTTCCTGAACCTTCCCAATGGGACTGGAGTTCTCTGAGACTCCGGGTTTGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR TCA 72 bp | AGCAGAGCTTTCCACAGAGCTGAGGAAATGAACACGTaGGGAGTTGTACCGAATTGTCTAGTACAAGGTAAA | + |
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Preference number: 3 (lower is better) Translates to: SRAFHRAEEMNT*GVVPNCLVQGK Trigger: TTTACCTTGTACTAGACAATTCGGTACAACTCCTCACGTGTTCATTTCCTCAGCTCTGTGGAAAGCTCTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR CCA 72 bp | TCATTTATTAAGAAATTCCTTCTCGTCAGGCGGTGGTaGCATATGCCTTTAATCCTAGCATTCAGGAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: SFIKKFLLVRRW*HMPLILAFRRQ Trigger: CTGCCTCCTGAATGCTAGGATTAAAGGCATATGCCACCACCGCCTGACGAGAAGGAATTTCTTAATAAATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR TCA 72 bp | CACAGGGCTCATGGGTATTTTCAAACCTTAAGAAAGTaGTGGTATTGTTTCCAACAGCCTGGTTTACCTGAC | + |
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Preference number: 3 (lower is better) Translates to: HRAHGYFQTLRK*WYCFQQPGLPD Trigger: GTCAGGTAAACCAGGCTGTTGGAAACAATACCATCACTTTCTTAAGGTTTGAAAATACCCATGAGCCCTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR GCA 72 bp | GGTATTGTTTCCAACAGCCTGGTTTACCTGACTAAATaGAAAGTTTTCTGTTTGAAGGGTTCCCAACAATCA | + |
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Preference number: 3 (lower is better) Translates to: GIVSNSLVYLTK*KVFCLKGSQQS Trigger: TGATTGTTGGGAACCCTTCAAACAGAAAACTTTGCATTTAGTCAGGTAAACCAGGCTGTTGGAAACAATACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR-3UTR CAA 90 bp | GTTTACCTGACTAAATGCAAAGTTTTCTGTTTGAAGGGTTCCCAACAATCAACATTTATGCTCGTGTCTTaGGGTTTAGCATCCTATCCT | + |
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Preference number: 3 (lower is better) Translates to: VYLTKCKVFCLKGSQQSTFMLVS*GLASYP Trigger: AGGATAGGATGCTAAACCCAAAGACACGAGCATAAA...TGTTGATTGTTGGGAACCCTTCAAACAGAAAACTTTGCATTTAGTCAGGTAAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR TCA 90 bp | TCGGCGTGTTCTTTGCCACCTCTTCAGAACTCCAGTGTGGGGGCTTTGTCATCACTGGGAGCGGAGGGCTaGGCTCCTTGGGAGGGACCC | + |
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Preference number: 4 (lower is better) Translates to: SACSLPPLQNSSVGALSSLGAEG*APWEGP Trigger: GGGTCCCTCCCAAGGAGCTCAGCCCTCCGCTCCCAG...TGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGTGGCAAAGAACACGCCGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR GCA 90 bp | TGTTCACACTGGTTTCAGCCTGTGCTGGTGCGGTTAACAAGCCTTGGGCTCCCGGGAGGGACCCTCTCGTaGACGACGGTGATCATGACG | + |
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Preference number: 4 (lower is better) Translates to: CSHWFQPVLVRLTSLGLPGGTLS*TTVIMT Trigger: CGTCATGATCACCGTCGTGCACGAGAGGGTCCCTCC...CGGGAGCCCAAGGCTTGTTAACCGCACCAGCACAGGCTGAAACCAGTGTGAACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR GCA 90 bp | TGTTCACACTGGTTTCAGCCTGTGCTGGTGCGGTTAACAAGCCTTGGGCTCCCGGGAGCACACTGGAAGTaGATTCCGGGCACAGGTAAC | + |
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Preference number: 4 (lower is better) Translates to: CSHWFQPVLVRLTSLGLPGAHWK*IPGTGN Trigger: GTTACCTGTGCCCGGAATGCACTTCCAGTGTGCTCC...CGGGAGCCCAAGGCTTGTTAACCGCACCAGCACAGGCTGAAACCAGTGTGAACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR TCA 90 bp | TGTTCACACTGGTTTCAGCCTGTGCTGGTGCGGTTAACAAGCCTTGGGCTCCCGATACTTTCTGCACGATaGCTTGAAGCAGCCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: CSHWFQPVLVRLTSLGLPILSAR*LEAARG Trigger: CCCCCTGGCTGCTTCAAGTCATCGTGCAGAAAGTAT...CGGGAGCCCAAGGCTTGTTAACCGCACCAGCACAGGCTGAAACCAGTGTGAACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR GCA 90 bp | TCACGGCATGGCACGGCAGGGCCCAAGCTAGCAGAGAGCACAAGCTTGCTCTCCAATCCGCTGTATTTTTaGCTGAGAGTCTCCATTGAG | + |
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Preference number: 4 (lower is better) Translates to: SRHGTAGPKLAESTSLLSNPLYF*LRVSIE Trigger: CTCAATGGAGACTCTCAGGCAAAAATACAGCGGATT...GGAGAGCAAGCTTGTGCTCTCTGCTAGCTTGGGCCCTGCCGTGCCATGCCGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| 3UTR CAA 72 bp | TGCCCAGGGATTGCAAGAGCTGACTCTCAGCCAACCTaGTGTCCCCAGCAAAAAGCTGCTTCCTGTGATGAC | + |
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Preference number: 4 (lower is better) Translates to: CPGIARADSQPT*CPQQKAASCDD Trigger: GTCATCACAGGAAGCAGCTTTTTGCTGGGGACACAAGGTTGGCTGAGAGTCAGCTCTTGCAATCCCTGGGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR CCA 90 bp | TGTTCACACTGGTTTCAGCCTGTGCTGGTGCGGTTAACAAGCCTTGGGCTCCCGGGCTTGTGTAAGTGTTaGTGGAGTCGTTGGTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: CSHWFQPVLVRLTSLGLPGLCKC*WSRWFD Trigger: GTCAAACCAACGACTCCACCAACACTTACACAAGCC...CGGGAGCCCAAGGCTTGTTAACCGCACCAGCACAGGCTGAAACCAGTGTGAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR TCA 90 bp | CTCGTCAGGCGGTGGTGGCATATGCCTTTAATCCTAGCATTCAGGAGGCAGAGGCGCTGTATTTTTGCCTaGGAGTCTCCATTGAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: LVRRWWHMPLILAFRRQRRCIFA*ESPLSL Trigger: CAAGCTCAATGGAGACTCTCAGGCAAAAATACAGCG...CCTCTGCCTCCTGAATGCTAGGATTAAAGGCATATGCCACCACCGCCTGACGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR TCA 90 bp | ACCTCTTCAGAACTCCAGTGTGGGGGCTTTGTCATCAATGAACGAAGAGCTGCACTACGAGAATGCAGATaGTCCCAGCCGCACTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: TSSELQCGGFVINERRAALRECR*SQPHSA Trigger: TGCTGAGTGCGGCTGGGATCATCTGCATTCTCGTAG...TGCAGCTCTTCGTTCATTGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR CCA 90 bp | TCGGCGTGTTCTTTGCCACCTCTTCAGAACTCCAGTGTGGGGGCTTTGTCATCATCGTTGGCCATGGAATaGTACCACCAAAACAGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: SACSLPPLQNSSVGALSSSLAME*YHQNSR Trigger: ACGGCTGTTTTGGTGGTACCATTCCATGGCCAACGA...TGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGTGGCAAAGAACACGCCGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR GCA 90 bp | TGCCATACCCATGAGAATGTAACCACCCCTTCCACTGGCTGCTCCCATGCTGTGATAAGGTCTTGGGTTTaGCCTTGCCATTTTTGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: CHTHENVTTPSTGCSHAVIRSWV*PCHFCP Trigger: AGGGCAAAAATGGCAAGGGCAAACCCAAGACCTTAT...CACAGCATGGGAGCAGCCAGTGGAAGGGGTGGTTACATTCTCATGGGTATGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR CCA 90 bp | GCGGTTAACAAGCCTTGGGCTCCCGGCAGGCAGCATCTAACGGGTATAGCAGGATTGTGTAAGTGTTGGTaGAGTCGTTGGTTTGACTTT | + |
|
Preference number: 4 (lower is better) Translates to: AVNKPWAPGRQHLTGIAGLCKCW*SRWFDF Trigger: AAAGTCAAACCAACGACTCCACCAACACTTACACAA...TCCTGCTATACCCGTTAGATGCTGCCTGCCGGGAGCCCAAGGCTTGTTAACCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR CCA 90 bp | TGCCATACCCATGAGAATGTAACCACCCCTTCCACTGGCTGCTCCCATGCTGTGCGTTGGATAAGGTCTTaGGTTTGCCCTTGCCATTTT | + |
|
Preference number: 4 (lower is better) Translates to: CHTHENVTTPSTGCSHAVRWIRS*VCPCHF Trigger: AAAATGGCAAGGGCAAACCCAAGACCTTATCCAACG...CACAGCATGGGAGCAGCCAGTGGAAGGGGTGGTTACATTCTCATGGGTATGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR CCA 90 bp | ACCTCTTCAGAACTCCAGTGTGGGGGCTTTGTCATCAATGAACGAAGAGCTGCACGCAGAAAGAGCCACTaGGTGATCCATAACCCAACC | + |
|
Preference number: 4 (lower is better) Translates to: TSSELQCGGFVINERRAARRKSH*VIHNPT Trigger: GGTTGGGTTATGGATCACCCAGTGGCTCTTTCTGCG...TGCAGCTCTTCGTTCATTGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR CCA 90 bp | TGTTCTTTGCCACCTCTTCAGAACTCCAGTGTGGGGGCTTTGTCATCAATGAACGTGAGCACGACAGTGTaGCCGCTGAAGAGGAAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: CSLPPLQNSSVGALSSMNVSTTV*PLKRKS Trigger: AGACTTCCTCTTCAGCGGCCACACTGTCGTGCTCAC...GTTCATTGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGTGGCAAAGAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR TCA 90 bp | TGTTCACACTGGTTTCAGCCTGTGCTGGTGCGGTTAACAAGCCTTGGGCTCCCGCCAGAAGTGACGAGGTaGATATTCTTTGATGAACAA | + |
|
Preference number: 4 (lower is better) Translates to: CSHWFQPVLVRLTSLGLPPEVTR*IFFDEQ Trigger: TTGTTCATCAAAGAATATTCACCTCGTCACTTCTGG...CGGGAGCCCAAGGCTTGTTAACCGCACCAGCACAGGCTGAAACCAGTGTGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR TCA 90 bp | ACCTCTTCAGAACTCCAGTGTGGGGGCTTTGTCATCAATGAACGAAGAGCTGCAGAAAGAGCCACTGGGTaGTCCATAACCCAACCAATA | + |
|
Preference number: 4 (lower is better) Translates to: TSSELQCGGFVINERRAAERATG*SITQPI Trigger: TATTGGTTGGGTTATGGATCACCCAGTGGCTCTTTC...TGCAGCTCTTCGTTCATTGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR TCA 90 bp | TCGGCGTGTTCTTTGCCACCTCTTCAGAACTCCAGTGTGGGGGCTTTGTCATCACATCCCGTTTATTTCTaGTACAGAAAATGCCCATTT | + |
|
Preference number: 4 (lower is better) Translates to: SACSLPPLQNSSVGALSSHPVYF*YRKCPF Trigger: AAATGGGCATTTTCTGTATCAGAAATAAACGGGATG...TGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGTGGCAAAGAACACGCCGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR TCA 90 bp | GTTTACCTGACTAAATGCAAAGTTTTCTGTTTGAAGGGTTCCCAACAATCAACACGACAGTGTGGCCGCTaGAGAGGAAGTCTCCGCACA | + |
|
Preference number: 4 (lower is better) Translates to: VYLTKCKVFCLKGSQQSTRQCGR*RGSLRT Trigger: TGTGCGGAGACTTCCTCTTCAGCGGCCACACTGTCG...TGTTGATTGTTGGGAACCCTTCAAACAGAAAACTTTGCATTTAGTCAGGTAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR GCA 90 bp | AGTTCTCTGAAAATAAATATAAAGCCGCACGTGCCTTCGGTTGCAGCACGGACTTGCCCTTGCCATTTTTaGCCTCTTCCTCTACAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: SSLKINIKPHVPSVAARTCPCHF*PLPLQL Trigger: AAGCTGTAGAGGAAGAGGGCAAAAATGGCAAGGGCA...AGTCCGTGCTGCAACCGAAGGCACGTGCGGCTTTATATTTATTTTCAGAGAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR TCA 90 bp | AGTTCTCTGAAAATAAATATAAAGCCGCACGTGCCTTCGGTTGCAGCACGGACTCAGAAAATGCCCATTTaGCCCGGTCGAAGTAATCAA | + |
|
Preference number: 4 (lower is better) Translates to: SSLKINIKPHVPSVAARTQKMPI*PGRSNQ Trigger: TTGATTACTTCGACCGGGTCAAATGGGCATTTTCTG...AGTCCGTGCTGCAACCGAAGGCACGTGCGGCTTTATATTTATTTTCAGAGAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| 3UTR CAA 72 bp | TCTTTGCCACCTCTTCAGAACTCCAGTGTGGGGGCTTaGTCATCAATGAACGAAGAGCTGCAGGAAAATATA | + |
|
Preference number: 4 (lower is better) Translates to: SLPPLQNSSVGA*SSMNEELQENI Trigger: TATATTTTCCTGCAGCTCTTCGTTCATTGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGTGGCAAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| 3UTR CAA 72 bp | AGCTCAAACCCGGAGTCTCAGAGAACTCCAGTCCCATaGGGAAGGTTCAGGAAAAACATGTGTGTTCTATAT | + |
|
Preference number: 4 (lower is better) Translates to: SSNPESQRTPVP*GRFRKNMCVLY Trigger: ATATAGAACACACATGTTTTTCCTGAACCTTCCCAATGGGACTGGAGTTCTCTGAGACTCCGGGTTTGAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR CCA 90 bp | AGTTCTCTGAAAATAAATATAAAGCCGCACGTGCCTTCGGTTGCAGCACGGACTTCTTTTCGTTGGCCATaGAATGGTACCACCAAAACA | + |
|
Preference number: 4 (lower is better) Translates to: SSLKINIKPHVPSVAARTSFRWP*NGTTKT Trigger: TGTTTTGGTGGTACCATTCCATGGCCAACGAAAAGA...AGTCCGTGCTGCAACCGAAGGCACGTGCGGCTTTATATTTATTTTCAGAGAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR TCA 90 bp | CTTTCTTTGACTCAAATTCTGAGAACTTTCCCTTTGGGAAGGATAAGAATGTCTAAAGCAGCAAGGAATTaGGCCTTGCACATTCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LSLTQILRTFPLGRIRMSKAARN*ALHILL Trigger: GAGAAGAATGTGCAAGGCTCAATTCCTTGCTGCTTT...AGACATTCTTATCCTTCCCAAAGGGAAAGTTCTCAGAATTTGAGTCAAAGAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR CCA 90 bp | CTTTCTTTGACTCAAATTCTGAGAACTTTCCCTTTGGGAAGGATAAGAATGTCTTCAAGTTCTTTTCGTTaGCCATGGAATGGTACCACC | + |
|
Preference number: 4 (lower is better) Translates to: LSLTQILRTFPLGRIRMSSSSFR*PWNGTT Trigger: GGTGGTACCATTCCATGGCCAACGAAAAGAACTTGA...AGACATTCTTATCCTTCCCAAAGGGAAAGTTCTCAGAATTTGAGTCAAAGAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR CCA 90 bp | CGAAGCGTCTATCTGTATAAAAACTTATCTTTGGGTACTTCTGACATGATTTTCGACAAGAAGTTCGTCTaGGAAGAGACCTTCAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: RSVYLYKNLSLGTSDMIFDKKFV*EETFKF Trigger: GAACTTGAAGGTCTCTTCCCAGACGAACTTCTTGTC...GAAAATCATGTCAGAAGTACCCAAAGATAAGTTTTTATACAGATAGACGCTTCG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| 3UTR CAA 72 bp | CGCTTACGAAGCGTCTATCTGTATAAAAACTTATCTTaGGGTACTTCTGACATGATTTTCAGTGTACAGATA | + |
|
Preference number: 4 (lower is better) Translates to: RLRSVYLYKNLS*GTSDMIFSVQI Trigger: TATCTGTACACTGAAAATCATGTCAGAAGTACCCAAAGATAAGTTTTTATACAGATAGACGCTTCGTAAGCG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS GCA 90 bp | TTGTCTGGGAGCGGAGGGCTGAGCTCCTTGGGAGGGACCCTCTCGTaGACGACGGTGATCATGACGGTTGTCAGGATGAGGTTGAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: LSGSGGLSSLGGTLS*TTVIMTVVRMRLKS Trigger: GCTCTTCAACCTCATCCTGACAACCGTCATGATCACCGTCGTGCACGAGAGGGTCCCTCCCAAGGAGCTCAGCCCTCCGCTCCCAGACAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR CAA 90 bp | TCGGCGTGTTCTTTGCCACCTCTTCAGAACTCCAGTGTGGGGGCTTTGTCATCAGGAGGGCTGAGCTCCTaGGGAGGGACCCTCTCGTGC | + |
|
Preference number: 5 (lower is better) Translates to: SACSLPPLQNSSVGALSSGGLSS*GGTLSC Trigger: GCACGAGAGGGTCCCTCCCAAGGAGCTCAGCCCTCC...TGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGTGGCAAAGAACACGCCGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS-3UTR CAA 90 bp | TGTTCACACTGGTTTCAGCCTGTGCTGGTGCGGTTAACAAGCCTTGGGCTCCCGTTTCTGCACGATGACTaGAAGCAGCCAGGGGGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: CSHWFQPVLVRLTSLGLPFLHDD*KQPGGQ Trigger: CTGGCCCCCTGGCTGCTTCAAGTCATCGTGCAGAAA...CGGGAGCCCAAGGCTTGTTAACCGCACCAGCACAGGCTGAAACCAGTGTGAACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS GCA 90 bp | TGGCACCCTTTCGTAACCCGTTGGATAAGGTCTTGGGTTTGCCCTTaGCATTTTTGCCCTCTTCCTCTACAGCTTCGGTGGGGCTTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: WHPFVTRWIRSWVCP*HFCPLPLQLRWGLC Trigger: ACACAAGCCCCACCGAAGCTGTAGAGGAAGAGGGCAAAAATGGCAAGGGCAAACCCAAGACCTTATCCAACGGGTTACGAAAGGGTGCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS GCA 90 bp | AGACAGTCCCCCGCCAGAAATCAGCCGGAGAATCCGCTGTATTTTTaGCTGAGAGTCTCCATTGAGCTTGGGAGCACACTGGAAGTGCAT | + |
|
Preference number: 5 (lower is better) Translates to: RQSPARNQPENPLYF*LRVSIELGSTLEVH Trigger: ATGCACTTCCAGTGTGCTCCCAAGCTCAATGGAGACTCTCAGGCAAAAATACAGCGGATTCTCCGGCTGATTTCTGGCGGGGGACTGTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR CAA 90 bp | TGCCATACCCATGAGAATGTAACCACCCCTTCCACTGGCTGCTCCCATGCTGTGTTGCCCTTGCCATTTTaGCCCTCTTCCTCTACAGCT | + |
|
Preference number: 5 (lower is better) Translates to: CHTHENVTTPSTGCSHAVLPLPF*PSSSTA Trigger: AGCTGTAGAGGAAGAGGGCAAAAATGGCAAGGGCAA...CACAGCATGGGAGCAGCCAGTGGAAGGGGTGGTTACATTCTCATGGGTATGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS GCA 90 bp | TTCGTAACCCGTTGGATAAGGTCTTGGGTTTGCCCTTGCCATTTTTaGCCTCTTCCTCTACAGCTTCGGTGGGGCTTGTGTAAGTGTTGG | + |
|
Preference number: 5 (lower is better) Translates to: FVTRWIRSWVCPCHF*PLPLQLRWGLCKCW Trigger: CCAACACTTACACAAGCCCCACCGAAGCTGTAGAGGAAGAGGGCAAAAATGGCAAGGGCAAACCCAAGACCTTATCCAACGGGTTACGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS CCA 90 bp | TGCCCTCTTCCTCTACAGCTTCGGTGGGGCTTGTGTAAGTGTTGGTaGAGTCGTTGGTTTGACTTTCCAAGTGACCTTCAAGTTTTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: CPLPLQLRWGLCKCW*SRWFDFPSDLQVLL Trigger: CAGCAAAACTTGAAGGTCACTTGGAAAGTCAAACCAACGACTCCACCAACACTTACACAAGCCCCACCGAAGCTGTAGAGGAAGAGGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090246.5 ENSMUST00000126569.2 |
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| CDS-3UTR CAA 90 bp | AGTTCTCTGAAAATAAATATAAAGCCGCACGTGCCTTCGGTTGCAGCACGGACTCACTCCAGGGGAAACTaGTTCTTGGAGTCGTTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: SSLKINIKPHVPSVAARTHSRGN*FLESLG Trigger: GCCCAACGACTCCAAGAACAAGTTTCCCCTGGAGTG...AGTCCGTGCTGCAACCGAAGGCACGTGCGGCTTTATATTTATTTTCAGAGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS CCA 90 bp | CAAAGGCGATGCCTGTTTTCCACCACTCCAGGGGAAACTTGTTCTTaGAGTCGTTGGGCATGGAAATCTGGATGTAGTCCGGGTATTTTT | + |
|
Preference number: 5 (lower is better) Translates to: QRRCLFSTTPGETCS*SRWAWKSGCSPGIF Trigger: AAAAATACCCGGACTACATCCAGATTTCCATGCCCAACGACTCCAAGAACAAGTTTCCCCTGGAGTGGTGGAAAACAGGCATCGCCTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR CAA 90 bp | TGTTCTTTGCCACCTCTTCAGAACTCCAGTGTGGGGGCTTTGTCATCAATGAACAGGGGAAACTTGTTCTaGGAGTCGTTGGGCATGGAA | + |
|
Preference number: 5 (lower is better) Translates to: CSLPPLQNSSVGALSSMNRGNLF*ESLGME Trigger: TTCCATGCCCAACGACTCCAAGAACAAGTTTCCCCT...GTTCATTGATGACAAAGCCCCCACACTGGAGTTCTGAAGAGGTGGCAAAGAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR CAA 90 bp | AGTTCTCTGAAAATAAATATAAAGCCGCACGTGCCTTCGGTTGCAGCACGGACTGGTGGAGTCGTTGGTTaGACTTTCCAAGTGACCTTC | + |
|
Preference number: 5 (lower is better) Translates to: SSLKINIKPHVPSVAARTGGVVG*TFQVTF Trigger: GAAGGTCACTTGGAAAGTCAAACCAACGACTCCACC...AGTCCGTGCTGCAACCGAAGGCACGTGCGGCTTTATATTTATTTTCAGAGAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS TCA 90 bp | ATCTGCGCCCCACTATTGACTTGTAACGCAGAAAGAGCCACTGGGTaGTCCATAACCCAACCAATACCATCCCGTTTATTTCTGATACAG | + |
|
Preference number: 5 (lower is better) Translates to: ICAPLLTCNAERATG*SITQPIPSRLFLIQ Trigger: CTGTATCAGAAATAAACGGGATGGTATTGGTTGGGTTATGGATCACCCAGTGGCTCTTTCTGCGTTACAAGTCAATAGTGGGGCGCAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR CAA 90 bp | CGAAGCGTCTATCTGTATAAAAACTTATCTTTGGGTACTTCTGACATGATTTTCTTCAAGTTCTTTTCGTaGGCCATGGAATGGTACCAC | + |
|
Preference number: 5 (lower is better) Translates to: RSVYLYKNLSLGTSDMIFFKFFS*AMEWYH Trigger: GTGGTACCATTCCATGGCCAACGAAAAGAACTTGAA...GAAAATCATGTCAGAAGTACCCAAAGATAAGTTTTTATACAGATAGACGCTTCG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS-3UTR CAA 90 bp | GTTTACCTGACTAAATGCAAAGTTTTCTGTTTGAAGGGTTCCCAACAATCAACAAAAAGCAGCAAGGAATaGAGCCTTGCACATTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: VYLTKCKVFCLKGSQQSTKSSKE*SLAHSS Trigger: AGAAGAATGTGCAAGGCTCAATTCCTTGCTGCTTTT...TGTTGATTGTTGGGAACCCTTCAAACAGAAAACTTTGCATTTAGTCAGGTAAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS GCA 72 bp | AGCGGAGGGCTGAGCTCCTTGGGAGGGACCCTCTCGTaGACGACGGTGATCATGACGGTTGTCAGGATGAGG | + |
|
Preference number: 6 (lower is better) Translates to: SGGLSSLGGTLS*TTVIMTVVRMR Trigger: CCTCATCCTGACAACCGTCATGATCACCGTCGTGCACGAGAGGGTCCCTCCCAAGGAGCTCAGCCCTCCGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS TCA 72 bp | CCCGATCTTCTGGACCCGGGAATACTTTCTGCACGATaGCTTGAAGCAGCCAGGGGGCCAGGACAGCGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: PDLLDPGILSAR*LEAARGPGQRP Trigger: TGGCCGCTGTCCTGGCCCCCTGGCTGCTTCAAGTCATCGTGCAGAAAGTATTCCCGGGTCCAGAAGATCGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS TCA 72 bp | TCTTCTGGACCCGGGAATACTTTCTGCACGATGACTTaGAGCAGCCAGGGGGCCAGGACAGCGGCCAGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: SSGPGNTFCTMT*SSQGARTAARK Trigger: TTTCCTGGCCGCTGTCCTGGCCCCCTGGCTGCTTCAAGTCATCGTGCAGAAAGTATTCCCGGGTCCAGAAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS CAA 90 bp | ACCCTCTCGTGCACGACGGTGATCATGACGGTTGTCAGGATGAGGTaGAAGAGCGCATACACAAAGGCGATGCCTGTTTTCCACCACTCC | + |
|
Preference number: 6 (lower is better) Translates to: TLSCTTVIMTVVRMR*KSAYTKAMPVFHHS Trigger: GGAGTGGTGGAAAACAGGCATCGCCTTTGTGTATGCGCTCTTCAACCTCATCCTGACAACCGTCATGATCACCGTCGTGCACGAGAGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS CAA 72 bp | CCGTTGGATAAGGTCTTGGGTTTGCCCTTGCCATTTTaGCCCTCTTCCTCTACAGCTTCGGTGGGGCTTGTG | + |
|
Preference number: 6 (lower is better) Translates to: PLDKVLGLPLPF*PSSSTASVGLV Trigger: CACAAGCCCCACCGAAGCTGTAGAGGAAGAGGGCAAAAATGGCAAGGGCAAACCCAAGACCTTATCCAACGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS GCA 72 bp | CGTTGGATAAGGTCTTGGGTTTGCCCTTGCCATTTTTaGCCTCTTCCTCTACAGCTTCGGTGGGGCTTGTGT | + |
|
Preference number: 6 (lower is better) Translates to: RWIRSWVCPCHF*PLPLQLRWGLC Trigger: ACACAAGCCCCACCGAAGCTGTAGAGGAAGAGGGCAAAAATGGCAAGGGCAAACCCAAGACCTTATCCAACG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS TCA 72 bp | CCAGAAATCAGCCGGAGAATCCGCTGTATTTTTGCCTaGGAGTCTCCATTGAGCTTGGGAGCACACTGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: PEISRRIRCIFA*ESPLSLGAHWK Trigger: CTTCCAGTGTGCTCCCAAGCTCAATGGAGACTCTCAGGCAAAAATACAGCGGATTCTCCGGCTGATTTCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS CCA 72 bp | TGCCTGTTTTCCACCACTCCAGGGGAAACTTGTTCTTaGAGTCGTTGGGCATGGAAATCTGGATGTAGTCCG | + |
|
Preference number: 6 (lower is better) Translates to: CLFSTTPGETCS*SRWAWKSGCSP Trigger: CGGACTACATCCAGATTTCCATGCCCAACGACTCCAAGAACAAGTTTCCCCTGGAGTGGTGGAAAACAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS CCA 72 bp | ATGGGGAACCACCAAGCCCGAGACAAGAAGTTCGTCTaGGAAGAGACCTTCAAGTTCTTTTCGTTGGCCATG | + |
|
Preference number: 6 (lower is better) Translates to: MGNHQARDKKFV*EETFKFFSLAM Trigger: CATGGCCAACGAAAAGAACTTGAAGGTCTCTTCCCAGACGAACTTCTTGTCTCGGGCTTGGTGGTTCCCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS CAA 72 bp | AAGGCGATGCCTGTTTTCCACCACTCCAGGGGAAACTaGTTCTTGGAGTCGTTGGGCATGGAAATCTGGATG | + |
|
Preference number: 6 (lower is better) Translates to: KAMPVFHHSRGN*FLESLGMEIWM Trigger: CATCCAGATTTCCATGCCCAACGACTCCAAGAACAAGTTTCCCCTGGAGTGGTGGAAAACAGGCATCGCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS CAA 72 bp | TGCACGACGGTGATCATGACGGTTGTCAGGATGAGGTaGAAGAGCGCATACACAAAGGCGATGCCTGTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: CTTVIMTVVRMR*KSAYTKAMPVF Trigger: GAAAACAGGCATCGCCTTTGTGTATGCGCTCTTCAACCTCATCCTGACAACCGTCATGATCACCGTCGTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS GCA 72 bp | CACCCTTTCGTAACCCGTTGGATAAGGTCTTGGGTTTaGCCTTGCCATTTTTGCCCTCTTCCTCTACAGCTT | + |
|
Preference number: 6 (lower is better) Translates to: HPFVTRWIRSWV*PCHFCPLPLQL Trigger: AAGCTGTAGAGGAAGAGGGCAAAAATGGCAAGGGCAAACCCAAGACCTTATCCAACGGGTTACGAAAGGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
||
| CDS CCA 72 bp | CCTCTACAGCTTCGGTGGGGCTTGTGTAAGTGTTGGTaGAGTCGTTGGTTTGACTTTCCAAGTGACCTTCAA | + |
|
Preference number: 6 (lower is better) Translates to: PLQLRWGLCKCW*SRWFDFPSDLQ Trigger: TTGAAGGTCACTTGGAAAGTCAAACCAACGACTCCACCAACACTTACACAAGCCCCACCGAAGCTGTAGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000090246.5 ENSMUST00000126569.2 |
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| CDS TCA 72 bp | AGTTCCCATGATGAAGAAGAATCTGCGCCCCACTATTaGCTTGTAACGCAGAAAGAGCCACTGGGTGATCCA | + |
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Preference number: 6 (lower is better) Translates to: SSHDEEESAPHY*LVTQKEPLGDP Trigger: TGGATCACCCAGTGGCTCTTTCTGCGTTACAAGTCAATAGTGGGGCGCAGATTCTTCTTCATCATGGGAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS CCA 72 bp | TCCACCACTCCAGGGGAAACTTGTTCTTGGAGTCGTTaGGCATGGAAATCTGGATGTAGTCCGGGTATTTTT | + |
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Preference number: 6 (lower is better) Translates to: STTPGETCSWSR*AWKSGCSPGIF Trigger: AAAAATACCCGGACTACATCCAGATTTCCATGCCCAACGACTCCAAGAACAAGTTTCCCCTGGAGTGGTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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| CDS CAA 72 bp | GGTGGGGCTTGTGTAAGTGTTGGTGGAGTCGTTGGTTaGACTTTCCAAGTGACCTTCAAGTTTTGCTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: GGACVSVGGVVG*TFQVTFKFCCL Trigger: GAGACAGCAAAACTTGAAGGTCACTTGGAAAGTCAAACCAACGACTCCACCAACACTTACACAAGCCCCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000090246.5 ENSMUST00000126569.2 |
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| CDS TCA 72 bp | CCACTATTGACTTGTAACGCAGAAAGAGCCACTGGGTaGTCCATAACCCAACCAATACCATCCCGTTTATTT | + |
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Preference number: 6 (lower is better) Translates to: PLLTCNAERATG*SITQPIPSRLF Trigger: AAATAAACGGGATGGTATTGGTTGGGTTATGGATCACCCAGTGGCTCTTTCTGCGTTACAAGTCAATAGTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090246.5 |
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