Pregenerated sensors for SGCZ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039539Ensembl transcript IDs: ENSMUST00000118896.2, ENSMUST00000135764.8
Found 118 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCTTCCTGCAGGTAGCCTTGAAGTCACCTGCAGCTGCGCTCACCTaGACCCCACGTGGAGCCTCCATTTTCAAGGATCTGGTTGGTGAT | + |
|
Preference number: 1 (lower is better) Translates to: SFLQVALKSPAAALT*TPRGASIFKDLVGD Trigger: ATCACCAACCAGATCCTTGAAAATGGAGGCTCCACGTGGGGTCCAGGTGAGCGCAGCTGCAGGTGACTTCAAGGCTACCTGCAGGAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR TCA 90 bp | GGCCAATCCCGGCGGATACTGGAACAGTTTGCTCTGTGGTCCATCTaGAGACGCTCTGCACTGATCACAGGGGAAACCGAGCAAAACCGT | + |
|
Preference number: 1 (lower is better) Translates to: GQSRRILEQFALWSI*RRSALITGETEQNR Trigger: ACGGTTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGAGCAAACTGTTCCAGTATCCGCCGGGATTGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR TCA 90 bp | TACTGGAACAGTTTGCTCTGTGGTCCATCTGAAGACGCTCTGCACTaGTCACAGGGGAAACCGAGCAAAACCGTGAAGCAGACGGACGGG | + |
|
Preference number: 1 (lower is better) Translates to: YWNSLLCGPSEDALH*SQGKPSKTVKQTDG Trigger: CCCGTCCGTCTGCTTCACGGTTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGAGCAAACTGTTCCAGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR GCA 90 bp | TGGACTGACAGGTGGAGCCTACCCCAGCTGGAGAAAGGTAGAGTTTaGCATTGGGGCAGACGCACAGTTCATACACTGTCTGTCGAGAAT | + |
|
Preference number: 1 (lower is better) Translates to: WTDRWSLPQLEKGRV*HWGRRTVHTLSVEN Trigger: ATTCTCGACAGACAGTGTATGAACTGTGCGTCTGCCCCAATGGCAAACTCTACCTTTCTCCAGCTGGGGTAGGCTCCACCTGTCAGTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR CCA 90 bp | GACAGGTGGAGCCTACCCCAGCTGGAGAAAGGTAGAGTTTGCCATTaGGGCAGACGCACAGTTCATACACTGTCTGTCGAGAATTTGAGG | + |
|
Preference number: 1 (lower is better) Translates to: DRWSLPQLEKGRVCH*GRRTVHTLSVENLR Trigger: CCTCAAATTCTCGACAGACAGTGTATGAACTGTGCGTCTGCCCCAATGGCAAACTCTACCTTTCTCCAGCTGGGGTAGGCTCCACCTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR CCA 90 bp | AGTCGCTTCAGTTCCACAAGCAAATGCTACTACTGGACTGACAGGTaGAGCCTACCCCAGCTGGAGAAAGGTAGAGTTTGCCATTGGGGC | + |
|
Preference number: 1 (lower is better) Translates to: SRFSSTSKCYYWTDR*SLPQLEKGRVCHWG Trigger: GCCCCAATGGCAAACTCTACCTTTCTCCAGCTGGGGTAGGCTCCACCTGTCAGTCCAGTAGTAGCATTTGCTTGTGGAACTGAAGCGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR TCA 90 bp | GAGTCAGTCCCACTCAGTGTGTTGAGAATGGTGAATCAGGAAAGGTaGAGGCCAATCCCGGCGGATACTGGAACAGTTTGCTCTGTGGTC | + |
|
Preference number: 1 (lower is better) Translates to: ESVPLSVLRMVNQER*RPIPADTGTVCSVV Trigger: GACCACAGAGCAAACTGTTCCAGTATCCGCCGGGATTGGCCTTCACCTTTCCTGATTCACCATTCTCAACACACTGAGTGGGACTGACTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR CCA 90 bp | CAAGCAAATGCTACTACTGGACTGACAGGTGGAGCCTACCCCAGCTaGAGAAAGGTAGAGTTTGCCATTGGGGCAGACGCACAGTTCATA | + |
|
Preference number: 1 (lower is better) Translates to: QANATTGLTGGAYPS*RKVEFAIGADAQFI Trigger: TATGAACTGTGCGTCTGCCCCAATGGCAAACTCTACCTTTCTCCAGCTGGGGTAGGCTCCACCTGTCAGTCCAGTAGTAGCATTTGCTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR TCA 90 bp | CAAAACCGTGAAGCAGACGGACGGGAACAAAAGGCTATTCTGGTGTaGGGAGAAATCAGTCGCTTCAGTTCCACAAGCAAATGCTACTAC | + |
|
Preference number: 1 (lower is better) Translates to: QNREADGREQKAILV*GEISRFSSTSKCYY Trigger: GTAGTAGCATTTGCTTGTGGAACTGAAGCGACTGATTTCTCCTCACACCAGAATAGCCTTTTGTTCCCGTCCGTCTGCTTCACGGTTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR GCA 90 bp | CATGTCACCAGTGGATTTGGGAATTTCGTCTGGGTAATGTGTTCGTaGGTAGTTCACAGCCAGGTTCTGCAAAAATCTAAAACTGTGTGT | + |
|
Preference number: 1 (lower is better) Translates to: HVTSGFGNFVWVMCS*VVHSQVLQKSKTVC Trigger: ACACACAGTTTTAGATTTTTGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCAGACGAAATTCCCAAATCCACTGGTGACATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR TCA 90 bp | AAACTGAGAGCCACTTTAATTCATTTCATTATAGTTGAGTTCATCTaGGGTCATTGTTGTCCGAAGAGGTTGGGGACTCCAGTTCCTTGT | + |
|
Preference number: 1 (lower is better) Translates to: KLRATLIHFIIVEFI*GHCCPKRLGTPVPC Trigger: ACAAGGAACTGGAGTCCCCAACCTCTTCGGACAACAATGACCTCAGATGAACTCAACTATAATGAAATGAATTAAAGTGGCTCTCAGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR TCA 90 bp | GCACTATCTAAAACTGAGAGCCACTTTAATTCATTTCATTATAGTTaGGTTCATCTGAGGTCATTGTTGTCCGAAGAGGTTGGGGACTCC | + |
|
Preference number: 1 (lower is better) Translates to: ALSKTESHFNSFHYS*VHLRSLLSEEVGDS Trigger: GGAGTCCCCAACCTCTTCGGACAACAATGACCTCAGATGAACTCAACTATAATGAAATGAATTAAAGTGGCTCTCAGTTTTAGATAGTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR-3UTR TCA 90 bp | AAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGGAAGACGCTCTGCACTaGTCACAGGGGAAACCGAGC | + |
|
Preference number: 2 (lower is better) Translates to: KGCDPGFLLKMFFPRPSQEDALH*SQGKPS Trigger: GCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTC...CTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR TCA 90 bp | GAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGGTGAATCAGGAAAGGTaGAGGCCAATCCCGGCGGAT | + |
|
Preference number: 2 (lower is better) Translates to: EQRLRSRFSAEDVFPTAEVNQER*RPIPAD Trigger: ATCCGCCGGGATTGGCCTTCACCTTTCCTGATTCAC...CTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTTGCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR CCA 90 bp | CGCTCTGCACTGATCACAGGGGAAACCGAGCAAAACCGTGAAGCAGACGGACGGAACAAAAGGCTATTCTaGTGTGAGGAGAAATCAGTC | + |
|
Preference number: 2 (lower is better) Translates to: RSALITGETEQNREADGRNKRLF*CEEKSV Trigger: GACTGATTTCTCCTCACACCAGAATAGCCTTTTGTT...CCGTCCGTCTGCTTCACGGTTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR CCA 90 bp | TGGGAATTTCGTCTGGGTAATGTGTTCGTGCGTAGTTCACAGCCAGGTTCTGCAGTTGTCCGAAGAGGTTaGGGACTCCAGTTCCTTGTG | + |
|
Preference number: 2 (lower is better) Translates to: WEFRLGNVFVRSSQPGSAVVRRG*GLQFLV Trigger: CACAAGGAACTGGAGTCCCCAACCTCTTCGGACAAC...TGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCAGACGAAATTCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR-3UTR TCA 90 bp | GTGTGTGCTTCACTCCACGTAGCAAAGGCACCTAAATTATTCTCCCTTTTGAGCGCTCTGTGGTCCATCTaGAGACGCTCTGCACTGATC | + |
|
Preference number: 2 (lower is better) Translates to: VCASLHVAKAPKLFSLLSALWSI*RRSALI Trigger: GATCAGTGCAGAGCGTCTTCAGATGGACCACAGAGC...GCTCAAAAGGGAGAATAATTTAGGTGCCTTTGCTACGTGGAGTGAAGCACACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR TCA 90 bp | TTGCCATTGGGGCAGACGCACAGTTCATACACTGTCTGTCGAGAATTTGAGGAGCAAGGATCTGGTTGGTaGTTCAAGCCTGAGGTCTTG | + |
|
Preference number: 2 (lower is better) Translates to: LPLGQTHSSYTVCREFEEQGSGW*FKPEVL Trigger: CAAGACCTCAGGCTTGAATCACCAACCAGATCCTTG...CTCCTCAAATTCTCGACAGACAGTGTATGAACTGTGCGTCTGCCCCAATGGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR-3UTR GCA 90 bp | AAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGCATCTGAAGACGCTCTaGACTGATCACAGGGGAAAC | + |
|
Preference number: 2 (lower is better) Translates to: KGCDPGFLLKMFFPRPSQHLKTL*TDHRGN Trigger: GTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATG...CTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR CAA 90 bp | AGACGCACAGTTCATACACTGTCTGTCGAGAATTTGAGGAGCTGGTaGAAGAAGAGAAGGAACCGATTGGTAGATTTCCCAGCCGGATTG | + |
|
Preference number: 2 (lower is better) Translates to: RRTVHTLSVENLRSW*KKRRNRLVDFPAGL Trigger: CAATCCGGCTGGGAAATCTACCAATCGGTTCCTTCTCTTCTTCAACCAGCTCCTCAAATTCTCGACAGACAGTGTATGAACTGTGCGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR CAA 90 bp | TGCCATTGGGGCAGACGCACAGTTCATACACTGTCTGTCGAGAATTaGAGGAGCTGGTTGAAGAAGAGAAGGAACCGATTGGTAGATTTC | + |
|
Preference number: 2 (lower is better) Translates to: CHWGRRTVHTLSVEN*RSWLKKRRNRLVDF Trigger: GAAATCTACCAATCGGTTCCTTCTCTTCTTCAACCAGCTCCTCAAATTCTCGACAGACAGTGTATGAACTGTGCGTCTGCCCCAATGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR-3UTR TCA 90 bp | TTATTCTCCCTTTTGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTGAAGACGCTCTGCACTaGTCACAGGGGAAACCGAGC | + |
|
Preference number: 2 (lower is better) Translates to: LFSLLSKGCDPGFLLKMFEDALH*SQGKPS Trigger: GCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTC...AAACATCTTCAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR TCA 90 bp | TGGGTAATGTGTTCGTGCGTAGTTCACAGCCAGGTTCTGCAAAAATCTAAAACTGCTCTGTGGTCCATCTaGAGACGCTCTGCACTGATC | + |
|
Preference number: 2 (lower is better) Translates to: WVMCSCVVHSQVLQKSKTALWSI*RRSALI Trigger: GATCAGTGCAGAGCGTCTTCAGATGGACCACAGAGC...AGTTTTAGATTTTTGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR TCA 90 bp | GGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGTCCCACTCAGTGTGTAATTATTCTCCCTTTTaGGCAAAGGTTGCGATCCAG | + |
|
Preference number: 2 (lower is better) Translates to: GFLLKMFFPRPSQSHSVCNYSPF*AKVAIQ Trigger: CTGGATCGCAACCTTTGCTCAAAAGGGAGAATAATT...ACACACTGAGTGGGACTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR GCA 90 bp | CATTTAAAAATATCTCCCCTTCTGTGGACTGTAAGTGCAGCTCCTTCCTGCAGGCATCTGAAGACGCTCTaGACTGATCACAGGGGAAAC | + |
|
Preference number: 2 (lower is better) Translates to: HLKISPLLWTVSAAPSCRHLKTL*TDHRGN Trigger: GTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATG...CCTGCAGGAAGGAGCTGCACTTACAGTCCACAGAAGGGGAGATATTTTTAAATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR-3UTR CCA 90 bp | AAATCAGTCGCTTCAGTTCCACAAGCAAATGCTACTACTGGACTGACAGGTGGAGGTAGAGTTTGCCATTaGGGCAGACGCACAGTTCAT | + |
|
Preference number: 2 (lower is better) Translates to: KSVASVPQANATTGLTGGGRVCH*GRRTVH Trigger: ATGAACTGTGCGTCTGCCCCAATGGCAAACTCTACC...TCCACCTGTCAGTCCAGTAGTAGCATTTGCTTGTGGAACTGAAGCGACTGATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR-3UTR TCA 90 bp | TGGGAATTTCGTCTGGGTAATGTGTTCGTGCGTAGTTCACAGCCAGGTTCTGCAAATTATTCTCCCTTTTaGGCAAAGGTTGCGATCCAG | + |
|
Preference number: 2 (lower is better) Translates to: WEFRLGNVFVRSSQPGSANYSPF*AKVAIQ Trigger: CTGGATCGCAACCTTTGCTCAAAAGGGAGAATAATT...TGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCAGACGAAATTCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR CCA 90 bp | GAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGAACAAAAGGCTATTCTaGTGTGAGGAGAAATCAGTC | + |
|
Preference number: 2 (lower is better) Translates to: EQRLRSRFSAEDVFPTAENKRLF*CEEKSV Trigger: GACTGATTTCTCCTCACACCAGAATAGCCTTTTGTT...CTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTTGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR GCA 90 bp | TCTGTGGTCCATCTGAAGACGCTCTGCACTGATCACAGGGGAAACCGAGCAAAATTCACAGCCAGGTTCTaGAAAAATCTAAAACTGTGT | + |
|
Preference number: 2 (lower is better) Translates to: SVVHLKTLCTDHRGNRAKFTARF*KNLKLC Trigger: ACACAGTTTTAGATTTTTGCAGAACCTGGCTGTGAA...TTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR GCA 90 bp | GGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGTCCCACTCAGTGTGTCAATACTTTGACTTTTaGGGAGTTAAGGCACTATCT | + |
|
Preference number: 2 (lower is better) Translates to: GFLLKMFFPRPSQSHSVCQYFDF*GVKALS Trigger: AGATAGTGCCTTAACTCCGCAAAAGTCAAAGTATTG...ACACACTGAGTGGGACTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR CAA 90 bp | TGTGCTTCACTCCACGTAGCAAAGGCACCTAAATTATTCTCCCTTTaGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTC | + |
|
Preference number: 2 (lower is better) Translates to: CASLHVAKAPKLFSL*SKGCDPGFLLKMFF Trigger: GAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAATTTAGGTGCCTTTGCTACGTGGAGTGAAGCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR CAA 90 bp | TGGTTGAAGAAGAGAAGGAACCGATTGGTAGATTTCCCAGCCGGATaGAATCTGCATTTAAAAATATCTCCCCTTCTGTGGACTGTAAGT | + |
|
Preference number: 2 (lower is better) Translates to: WLKKRRNRLVDFPAG*NLHLKISPLLWTVS Trigger: ACTTACAGTCCACAGAAGGGGAGATATTTTTAAATGCAGATTCAATCCGGCTGGGAAATCTACCAATCGGTTCCTTCTCTTCTTCAACCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR CAA 90 bp | TCTGTCGAGAATTTGAGGAGCTGGTTGAAGAAGAGAAGGAACCGATaGGTAGATTTCCCAGCCGGATTGAATCTGCATTTAAAAATATCT | + |
|
Preference number: 2 (lower is better) Translates to: SVENLRSWLKKRRNR*VDFPAGLNLHLKIS Trigger: AGATATTTTTAAATGCAGATTCAATCCGGCTGGGAAATCTACCAATCGGTTCCTTCTCTTCTTCAACCAGCTCCTCAAATTCTCGACAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR GCA 72 bp | GTGCAGCTCCTTCCTGCAGGTAGCCTTGAAGTCACCTaGAGCTGCGCTCACCTGGACCCCACGTGGAGCCTC | + |
|
Preference number: 3 (lower is better) Translates to: VQLLPAGSLEVT*SCAHLDPTWSL Trigger: GAGGCTCCACGTGGGGTCCAGGTGAGCGCAGCTGCAGGTGACTTCAAGGCTACCTGCAGGAAGGAGCTGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR CCA 72 bp | CAGGTAGCCTTGAAGTCACCTGCAGCTGCGCTCACCTaGACCCCACGTGGAGCCTCCATTTTCAAGGATCTG | + |
|
Preference number: 3 (lower is better) Translates to: QVALKSPAAALT*TPRGASIFKDL Trigger: CAGATCCTTGAAAATGGAGGCTCCACGTGGGGTCCAGGTGAGCGCAGCTGCAGGTGACTTCAAGGCTACCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR CCA 72 bp | GCTACTACTGGACTGACAGGTGGAGCCTACCCCAGCTaGAGAAAGGTAGAGTTTGCCATTGGGGCAGACGCA | + |
|
Preference number: 3 (lower is better) Translates to: ATTGLTGGAYPS*RKVEFAIGADA Trigger: TGCGTCTGCCCCAATGGCAAACTCTACCTTTCTCCAGCTGGGGTAGGCTCCACCTGTCAGTCCAGTAGTAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR TCA 72 bp | CGGCGGATACTGGAACAGTTTGCTCTGTGGTCCATCTaGAGACGCTCTGCACTGATCACAGGGGAAACCGAG | + |
|
Preference number: 3 (lower is better) Translates to: RRILEQFALWSI*RRSALITGETE Trigger: CTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGAGCAAACTGTTCCAGTATCCGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR CAA 90 bp | TGCAGCTGCGCTCACCTGGACCCCACGTGGAGCCTCCATTTTCAAGGATCTGGTGGATACTGGAACAGTTaGCTCTGTGGTCCATCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: CSCAHLDPTWSLHFQGSGGYWNS*LCGPSE Trigger: TTCAGATGGACCACAGAGCAAACTGTTCCAGTATCC...ACCAGATCCTTGAAAATGGAGGCTCCACGTGGGGTCCAGGTGAGCGCAGCTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR-3UTR CAA 90 bp | GGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGTCCCACTCAGTGTGTTTCCTGCAGGTAGCCTaGAAGTCACCTGCAGCTGCG | + |
|
Preference number: 3 (lower is better) Translates to: GFLLKMFFPRPSQSHSVCFLQVA*KSPAAA Trigger: CGCAGCTGCAGGTGACTTCAAGGCTACCTGCAGGAA...ACACACTGAGTGGGACTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR CCA 72 bp | AGCCTACCCCAGCTGGAGAAAGGTAGAGTTTGCCATTaGGGCAGACGCACAGTTCATACACTGTCTGTCGAG | + |
|
Preference number: 3 (lower is better) Translates to: SLPQLEKGRVCH*GRRTVHTLSVE Trigger: CTCGACAGACAGTGTATGAACTGTGCGTCTGCCCCAATGGCAAACTCTACCTTTCTCCAGCTGGGGTAGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR TCA 72 bp | AGTTTGCTCTGTGGTCCATCTGAAGACGCTCTGCACTaGTCACAGGGGAAACCGAGCAAAACCGTGAAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: SLLCGPSEDALH*SQGKPSKTVKQ Trigger: CTGCTTCACGGTTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGAGCAAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR CCA 72 bp | GAATCAGGAAAGGTGAAGGCCAATCCCGGCGGATACTaGAACAGTTTGCTCTGTGGTCCATCTGAAGACGCT | + |
|
Preference number: 3 (lower is better) Translates to: ESGKVKANPGGY*NSLLCGPSEDA Trigger: AGCGTCTTCAGATGGACCACAGAGCAAACTGTTCCAGTATCCGCCGGGATTGGCCTTCACCTTTCCTGATTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR TCA 72 bp | CCACTCAGTGTGTTGAGAATGGTGAATCAGGAAAGGTaGAGGCCAATCCCGGCGGATACTGGAACAGTTTGC | + |
|
Preference number: 3 (lower is better) Translates to: PLSVLRMVNQER*RPIPADTGTVC Trigger: GCAAACTGTTCCAGTATCCGCCGGGATTGGCCTTCACCTTTCCTGATTCACCATTCTCAACACACTGAGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR CCA 72 bp | AGTTCCACAAGCAAATGCTACTACTGGACTGACAGGTaGAGCCTACCCCAGCTGGAGAAAGGTAGAGTTTGC | + |
|
Preference number: 3 (lower is better) Translates to: SSTSKCYYWTDR*SLPQLEKGRVC Trigger: GCAAACTCTACCTTTCTCCAGCTGGGGTAGGCTCCACCTGTCAGTCCAGTAGTAGCATTTGCTTGTGGAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR-3UTR CAA 90 bp | TCTGTGGTCCATCTGAAGACGCTCTGCACTGATCACAGGGGAAACCGAGCAAAAGGATACTGGAACAGTTaGCTCTGTGGTCCATCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: SVVHLKTLCTDHRGNRAKGYWNS*LCGPSE Trigger: TTCAGATGGACCACAGAGCAAACTGTTCCAGTATCC...TTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGGAATTTCGTCTGGGTAATGTGTTCGTGCGTAGTTCACAGCCAGGTTCTGCAGTCCCACTCAGTGTGTaGAGAATGGTGAATCAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: WEFRLGNVFVRSSQPGSAVPLSV*RMVNQE Trigger: TTCCTGATTCACCATTCTCAACACACTGAGTGGGAC...TGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCAGACGAAATTCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR TCA 72 bp | GAAGCAGACGGACGGGAACAAAAGGCTATTCTGGTGTaGGGAGAAATCAGTCGCTTCAGTTCCACAAGCAAA | + |
|
Preference number: 3 (lower is better) Translates to: EADGREQKAILV*GEISRFSSTSK Trigger: TTTGCTTGTGGAACTGAAGCGACTGATTTCTCCTCACACCAGAATAGCCTTTTGTTCCCGTCCGTCTGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR GCA 72 bp | GCATTTAAAAATATCTCCCCTTCTGTGGACTGTAAGTaGAGCTCCTTCCTGCAGGTAGCCTTGAAGTCACCT | + |
|
Preference number: 3 (lower is better) Translates to: AFKNISPSVDCK*SSFLQVALKSP Trigger: AGGTGACTTCAAGGCTACCTGCAGGAAGGAGCTGCACTTACAGTCCACAGAAGGGGAGATATTTTTAAATGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR-3UTR CAA 90 bp | AAATCAGTCGCTTCAGTTCCACAAGCAAATGCTACTACTGGACTGACAGGTGGAAATTTGAGGAGCTGGTaGAAGAAGAGAAGGAACCGA | + |
|
Preference number: 3 (lower is better) Translates to: KSVASVPQANATTGLTGGNLRSW*KKRRNR Trigger: TCGGTTCCTTCTCTTCTTCAACCAGCTCCTCAAATT...TCCACCTGTCAGTCCAGTAGTAGCATTTGCTTGTGGAACTGAAGCGACTGATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| 3UTR GCA 72 bp | AGTGGATTTGGGAATTTCGTCTGGGTAATGTGTTCGTaGGTAGTTCACAGCCAGGTTCTGCAAAAATCTAAA | + |
|
Preference number: 3 (lower is better) Translates to: SGFGNFVWVMCS*VVHSQVLQKSK Trigger: TTTAGATTTTTGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCAGACGAAATTCCCAAATCCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR TCA 72 bp | AAAACTGAGAGCCACTTTAATTCATTTCATTATAGTTaGGTTCATCTGAGGTCATTGTTGTCCGAAGAGGTT | + |
|
Preference number: 3 (lower is better) Translates to: KTESHFNSFHYS*VHLRSLLSEEV Trigger: AACCTCTTCGGACAACAATGACCTCAGATGAACTCAACTATAATGAAATGAATTAAAGTGGCTCTCAGTTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS-3UTR CCA 90 bp | CGCTCTGCACTGATCACAGGGGAAACCGAGCAAAACCGTGAAGCAGACGGACGGGGAGCCTACCCCAGCTaGAGAAAGGTAGAGTTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: RSALITGETEQNREADGRGAYPS*RKVEFA Trigger: GGCAAACTCTACCTTTCTCCAGCTGGGGTAGGCTCC...CCGTCCGTCTGCTTCACGGTTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR GCA 90 bp | AAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGGAAGTCACCTGCAGCTaGGCTCACCTGGACCCCACG | + |
|
Preference number: 4 (lower is better) Translates to: KGCDPGFLLKMFFPRPSQEVTCS*AHLDPT Trigger: CGTGGGGTCCAGGTGAGCGCAGCTGCAGGTGACTTC...CTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR CCA 90 bp | GAGGGCGTGATGAAACTGCCGATGCTGAGCTCAGGGCAACACAGTGCTAGACGTGTCATCTTGAGCTCCTaGATGTCCAGGTCCGTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: EGVMKLPMLSSGQHSARRVILSS*MSRSVD Trigger: ATCCACGGACCTGGACATCCAGGAGCTCAAGATGAC...ACGTCTAGCACTGTGTTGCCCTGAGCTCAGCATCGGCAGTTTCATCACGCCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS-3UTR CCA 90 bp | GCGGATACTGGAACAGTTTGCTCTGTGGTCCATCTGAAGACGCTCTGCACTGATTACTGGACTGACAGGTaGAGCCTACCCCAGCTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: ADTGTVCSVVHLKTLCTDYWTDR*SLPQLE Trigger: CTCCAGCTGGGGTAGGCTCCACCTGTCAGTCCAGTA...ATCAGTGCAGAGCGTCTTCAGATGGACCACAGAGCAAACTGTTCCAGTATCCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR GCA 90 bp | GAGGGCGTGATGAAACTGCCGATGCTGAGCTCAGGGCAACACAGTGCTAGACGTCTCGGCAGGTTGTTCTaGTGTGTGGCTAGTATGTAT | + |
|
Preference number: 4 (lower is better) Translates to: EGVMKLPMLSSGQHSARRLGRLF*CVASMY Trigger: ATACATACTAGCCACACAGCAGAACAACCTGCCGAG...ACGTCTAGCACTGTGTTGCCCTGAGCTCAGCATCGGCAGTTTCATCACGCCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | GGGAAACCGAGCAAAACCGTGAAGCAGACGGACGGGAACAAAAGGCTATTCTGGCACAGGGTAGAGTTGTaGGTTTTCAGGTCTCGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: GKPSKTVKQTDGNKRLFWHRVEL*VFRSRQ Trigger: CTGCCGAGACCTGAAAACGCACAACTCTACCCTGTG...CCAGAATAGCCTTTTGTTCCCGTCCGTCTGCTTCACGGTTTTGCTCGGTTTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | AAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGAGCCTTGAAGTCACCTaGAGCTGCGCTCACCTGGAC | + |
|
Preference number: 4 (lower is better) Translates to: KGCDPGFLLKMFFPRPSQSLEVT*SCAHLD Trigger: GTCCAGGTGAGCGCAGCTGCAGGTGACTTCAAGGCT...CTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR CCA 90 bp | GAGAATGGTGAATCAGGAAAGGTGAAGGCCAATCCCGGCGGATACTGGAACAGTCACCTGGACCCCACGTaGAGCCTCCATTTTCAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: ENGESGKVKANPGGYWNSHLDPT*SLHFQG Trigger: TCCTTGAAAATGGAGGCTCCACGTGGGGTCCAGGTG...ACTGTTCCAGTATCCGCCGGGATTGGCCTTCACCTTTCCTGATTCACCATTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| 3UTR CAA 72 bp | TCATTGTTGTCCGAAGAGGTTGGGGACTCCAGTTCCTaGTGCGGATGGTCAATTGACACGTGGTCTGAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: SLLSEEVGDSSS*CGWSIDTWSEH Trigger: GTGCTCAGACCACGTGTCAATTGACCATCCGCACAAGGAACTGGAGTCCCCAACCTCTTCGGACAACAATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS-3UTR TCA 90 bp | GGGAAACCGAGCAAAACCGTGAAGCAGACGGACGGGAACAAAAGGCTATTCTGGGGATTCCCTTCTTGGTaGCTCTCAGATTCCCCATAC | + |
|
Preference number: 4 (lower is better) Translates to: GKPSKTVKQTDGNKRLFWGFPSW*LSDSPY Trigger: GTATGGGGAATCTGAGAGTCACCAAGAAGGGAATCC...CCAGAATAGCCTTTTGTTCCCGTCCGTCTGCTTCACGGTTTTGCTCGGTTTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR TCA 90 bp | GAGAATGGTGAATCAGGAAAGGTGAAGGCCAATCCCGGCGGATACTGGAACAGTTCAAGCCTGAGGTCTTaGGATGGCTCTGCTCTGATG | + |
|
Preference number: 4 (lower is better) Translates to: ENGESGKVKANPGGYWNSSSLRS*DGSALM Trigger: CATCAGAGCAGAGCCATCTCAAGACCTCAGGCTTGA...ACTGTTCCAGTATCCGCCGGGATTGGCCTTCACCTTTCCTGATTCACCATTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR GCA 90 bp | TCTGTGGTCCATCTGAAGACGCTCTGCACTGATCACAGGGGAAACCGAGCAAAACACAGGGTAGAGTTGTaGGTTTTCAGGTCTCGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: SVVHLKTLCTDHRGNRAKHRVEL*VFRSRQ Trigger: CTGCCGAGACCTGAAAACGCACAACTCTACCCTGTG...TTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | AATCCCGGCGGATACTGGAACAGTTTGCTCTGTGGTCCATCTGAAGACGCTCTGGAGAAAGGTAGAGTTTaGCATTGGGGCAGACGCACA | + |
|
Preference number: 4 (lower is better) Translates to: NPGGYWNSLLCGPSEDALEKGRV*HWGRRT Trigger: TGTGCGTCTGCCCCAATGGCAAACTCTACCTTTCTC...CAGAGCGTCTTCAGATGGACCACAGAGCAAACTGTTCCAGTATCCGCCGGGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR CCA 90 bp | GAGAATGGTGAATCAGGAAAGGTGAAGGCCAATCCCGGCGGATACTGGAACAGTCCTGAGGTCTTGAGATaGCTCTGCTCTGATGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: ENGESGKVKANPGGYWNSPEVLR*LCSDVR Trigger: CCTCACATCAGAGCAGAGCCATCTCAAGACCTCAGG...ACTGTTCCAGTATCCGCCGGGATTGGCCTTCACCTTTCCTGATTCACCATTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR CCA 90 bp | GGGAAACCGAGCAAAACCGTGAAGCAGACGGACGGGAACAAAAGGCTATTCTGGGGTAGAGTTTGCCATTaGGGCAGACGCACAGTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: GKPSKTVKQTDGNKRLFWGRVCH*GRRTVH Trigger: ATGAACTGTGCGTCTGCCCCAATGGCAAACTCTACC...CCAGAATAGCCTTTTGTTCCCGTCCGTCTGCTTCACGGTTTTGCTCGGTTTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR TCA 90 bp | GGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGTCCCACTCAGTGTGTCAAGGATCTGGTTGGTaGTTCAAGCCTGAGGTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: GFLLKMFFPRPSQSHSVCQGSGW*FKPEVL Trigger: CAAGACCTCAGGCTTGAATCACCAACCAGATCCTTG...ACACACTGAGTGGGACTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR CCA 90 bp | AAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGGTCATCTTGAGCTCCTaGATGTCCAGGTCCGTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: KGCDPGFLLKMFFPRPSQVILSS*MSRSVD Trigger: ATCCACGGACCTGGACATCCAGGAGCTCAAGATGAC...CTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR TCA 90 bp | AAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGGGATTCCCTTCTTGGTaGCTCTCAGATTCCCCATAC | + |
|
Preference number: 4 (lower is better) Translates to: KGCDPGFLLKMFFPRPSQGFPSW*LSDSPY Trigger: GTATGGGGAATCTGAGAGTCACCAAGAAGGGAATCC...CTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | GAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGCTCGGCAGGTTGTTCTaGTGTGTGGCTAGTATGTAT | + |
|
Preference number: 4 (lower is better) Translates to: EQRLRSRFSAEDVFPTAELGRLF*CVASMY Trigger: ATACATACTAGCCACACAGCAGAACAACCTGCCGAG...CTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTTGCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | GGAACAGTTTGCTCTGTGGTCCATCTGAAGACGCTCTGCACTGATCACAGGGGATCACTTCGAATCTTTTaGACTGTGCCTCAACAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: GTVCSVVHLKTLCTDHRGSLRIF*TVPQQL Trigger: AAGCTGTTGAGGCACAGTGCAAAAGATTCGAAGTGA...TCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGAGCAAACTGTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | TCTGTGGTCCATCTGAAGACGCTCTGCACTGATCACAGGGGAAACCGAGCAAAACCTGCCATCTTCACTTaGTCTCACTTCGAATCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SVVHLKTLCTDHRGNRAKPAIFT*SHFESF Trigger: AAAAGATTCGAAGTGAGAGCAAGTGAAGATGGCAGG...TTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | GCGGATACTGGAACAGTTTGCTCTGTGGTCCATCTGAAGACGCTCTGCACTGATAGAGTGTCCAAATACTaGTCCTTCAGTTCCTGTAAC | + |
|
Preference number: 4 (lower is better) Translates to: ADTGTVCSVVHLKTLCTDRVSKY*SFSSCN Trigger: GTTACAGGAACTGAAGGAGCAGTATTTGGACACTCT...ATCAGTGCAGAGCGTCTTCAGATGGACCACAGAGCAAACTGTTCCAGTATCCGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR CCA 90 bp | TCTGTGGTCCATCTGAAGACGCTCTGCACTGATCACAGGGGAAACCGAGCAAAAGGTTGTTCTGCTGTGTaGCTAGTATGTATTGTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: SVVHLKTLCTDHRGNRAKGCSAV*LVCIVL Trigger: GAGAACAATACATACTAGCCACACAGCAGAACAACC...TTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR TCA 90 bp | TGGGTAATGTGTTCGTGCGTAGTTCACAGCCAGGTTCTGCAAAAATCTAAAACTGAGATGGCTCTGCTCTaGTGTGAGGTGTTTCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: WVMCSCVVHSQVLQKSKTEMALL*CEVFPQ Trigger: CTGTGGAAACACCTCACATCAGAGCAGAGCCATCTC...AGTTTTAGATTTTTGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR TCA 90 bp | GGGAATTTCGTCTGGGTAATGTGTTCGTGCGTAGTTCACAGCCAGGTTCTGCAAGGAAGTAATATCATTTaGGCTGCAGTTCTCCCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: GNFVWVMCSCVVHSQVLQGSNII*AAVLPV Trigger: TACAGGGAGAACTGCAGCTCAAATGATATTACTTCC...TTGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCAGACGAAATTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | GAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGCCCCATATGGTTCCTTaGATTCACTGTTACATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: EQRLRSRFSAEDVFPTAEPHMVP*IHCYIS Trigger: AGAAATGTAACAGTGAATGCAAGGAACCATATGGGG...CTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTTGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | AAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGCCTGCCATCTTCACTTaGTCTCACTTCGAATCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: KGCDPGFLLKMFFPRPSQPAIFT*SHFESF Trigger: AAAAGATTCGAAGTGAGAGCAAGTGAAGATGGCAGG...CTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR CCA 90 bp | TTGCCATTGGGGCAGACGCACAGTTCATACACTGTCTGTCGAGAATTTGAGGAGGGTTGTTCTGCTGTGTaGCTAGTATGTATTGTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LPLGQTHSSYTVCREFEEGCSAV*LVCIVL Trigger: GAGAACAATACATACTAGCCACACAGCAGAACAACC...CTCCTCAAATTCTCGACAGACAGTGTATGAACTGTGCGTCTGCCCCAATGGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | GCACCTAAATTATTCTCCCTTTTGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGCAGAAAACAGCACCCTaGCATCTTCACTTGCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: APKLFSLLSKGCDPGFLLQKTAP*HLHLLS Trigger: TGAGAGCAAGTGAAGATGGCAGGGTGCTGTTTTCTG...CAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAATTTAGGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR CAA 72 bp | CTCCACGTAGCAAAGGCACCTAAATTATTCTCCCTTTaGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LHVAKAPKLFSL*SKGCDPGFLLK Trigger: CTTCAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAATTTAGGTGCCTTTGCTACGTGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | GCACCTAAATTATTCTCCCTTTTGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAGTTCCACAAGCAAATaGTACTACTGGACTGACAGG | + |
|
Preference number: 4 (lower is better) Translates to: APKLFSLLSKGCDPGFLLSSTSK*YYWTDR Trigger: CCTGTCAGTCCAGTAGTAGCATTTGCTTGTGGAACT...CAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAATTTAGGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR CCA 90 bp | TGGGTAATGTGTTCGTGCGTAGTTCACAGCCAGGTTCTGCAAAAATCTAAAACTGTGAGCTGCCCCATATaGTTCCTTGCATTCACTGTT | + |
|
Preference number: 4 (lower is better) Translates to: WVMCSCVVHSQVLQKSKTVSCPI*FLAFTV Trigger: AACAGTGAATGCAAGGAACCATATGGGGCAGCTCAC...AGTTTTAGATTTTTGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | GCACCTAAATTATTCTCCCTTTTGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGTCACTTCGAATCTTTTaGACTGTGCCTCAACAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: APKLFSLLSKGCDPGFLLSLRIF*TVPQQL Trigger: AAGCTGTTGAGGCACAGTGCAAAAGATTCGAAGTGA...CAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAATTTAGGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR GCA 90 bp | TTATTCTCCCTTTTGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTCAGAAAACAGCACCCTaGCATCTTCACTTGCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: LFSLLSKGCDPGFLLKMFQKTAP*HLHLLS Trigger: TGAGAGCAAGTGAAGATGGCAGGGTGCTGTTTTCTG...AAACATCTTCAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| 3UTR CAA 72 bp | AAGAGAAGGAACCGATTGGTAGATTTCCCAGCCGGATaGAATCTGCATTTAAAAATATCTCCCCTTCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: KRRNRLVDFPAG*NLHLKISPLLW Trigger: CCACAGAAGGGGAGATATTTTTAAATGCAGATTCAATCCGGCTGGGAAATCTACCAATCGGTTCCTTCTCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | GAGGGCGTGATGAAACTGCCGATGCTGAGCTCAGGGCAACACAGTGCTAGACGTTCAGGTCTCGGCAGGTaGTTCTGCTGTGTGGCTAGT | + |
|
Preference number: 5 (lower is better) Translates to: EGVMKLPMLSSGQHSARRSGLGR*FCCVAS Trigger: ACTAGCCACACAGCAGAACAACCTGCCGAGACCTGA...ACGTCTAGCACTGTGTTGCCCTGAGCTCAGCATCGGCAGTTTCATCACGCCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS GCA 90 bp | CACCCTGCCATCTTCACTTGCTCTCACTTCGAATCTTTTGCACTGTaGCTCAACAGCTTCAGCTCCGACTGTCAGCTGTCCAGTGAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: HPAIFTCSHFESFAL*LNSFSSDCQLSSEL Trigger: CAGCTCACTGGACAGCTGACAGTCGGAGCTGAAGCTGTTGAGGCACAGTGCAAAAGATTCGAAGTGAGAGCAAGTGAAGATGGCAGGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | TCTGTGGTCCATCTGAAGACGCTCTGCACTGATCACAGGGGAAACCGAGCAAAATCAGGTCTCGGCAGGTaGTTCTGCTGTGTGGCTAGT | + |
|
Preference number: 5 (lower is better) Translates to: SVVHLKTLCTDHRGNRAKSGLGR*FCCVAS Trigger: ACTAGCCACACAGCAGAACAACCTGCCGAGACCTGA...TTTTGCTCGGTTTCCCCTGTGATCAGTGCAGAGCGTCTTCAGATGGACCACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | GAGGGCGTGATGAAACTGCCGATGCTGAGCTCAGGGCAACACAGTGCTAGACGTCCCTGCCATCTTCACTaGCTCTCACTTCGAATCTTT | + |
|
Preference number: 5 (lower is better) Translates to: EGVMKLPMLSSGQHSARRPCHLH*LSLRIF Trigger: AAAGATTCGAAGTGAGAGCAAGTGAAGATGGCAGGG...ACGTCTAGCACTGTGTTGCCCTGAGCTCAGCATCGGCAGTTTCATCACGCCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | GAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGAGTCGGATTCCCTTCTaGGTGACTCTCAGATTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: EQRLRSRFSAEDVFPTAESRIPF*VTLRFP Trigger: GGGGAATCTGAGAGTCACCAAGAAGGGAATCCGACT...CTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTTGCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | GTCATTGTTGTCCGAAGAGGTTGGGGACTCCAGTTCCTTGTGCGGATGGTCAATAGTCGGATTCCCTTCTaGGTGACTCTCAGATTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: VIVVRRGWGLQFLVRMVNSRIPF*VTLRFP Trigger: GGGGAATCTGAGAGTCACCAAGAAGGGAATCCGACT...ATTGACCATCCGCACAAGGAACTGGAGTCCCCAACCTCTTCGGACAACAATGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS TCA 90 bp | TGCACTGTGCCTCAACAGCTTCAGCTCCGACTGTCAGCTGTCCAGTaGGCTGCCCCATATGGTTCCTTGCATTCACTGTTACATTTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: CTVPQQLQLRLSAVQ*AAPYGSLHSLLHFC Trigger: ACAGAAATGTAACAGTGAATGCAAGGAACCATATGGGGCAGCTCACTGGACAGCTGACAGTCGGAGCTGAAGCTGTTGAGGCACAGTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS GCA 90 bp | AAAACAGCACCCTGCCATCTTCACTTGCTCTCACTTCGAATCTTTTaGACTGTGCCTCAACAGCTTCAGCTCCGACTGTCAGCTGTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: KTAPCHLHLLSLRIF*TVPQQLQLRLSAVQ Trigger: CTGGACAGCTGACAGTCGGAGCTGAAGCTGTTGAGGCACAGTGCAAAAGATTCGAAGTGAGAGCAAGTGAAGATGGCAGGGTGCTGTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | GAGAATGGTGAATCAGGAAAGGTGAAGGCCAATCCCGGCGGATACTGGAACAGTTTCAAGCCTGAGGTCTaGAGATGGCTCTGCTCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: ENGESGKVKANPGGYWNSFKPEV*RWLCSD Trigger: ATCAGAGCAGAGCCATCTCAAGACCTCAGGCTTGAA...ACTGTTCCAGTATCCGCCGGGATTGGCCTTCACCTTTCCTGATTCACCATTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS CCA 90 bp | ACAGCTTCAGCTCCGACTGTCAGCTGTCCAGTGAGCTGCCCCATATaGTTCCTTGCATTCACTGTTACATTTCTGTCAGACTGTAAGACC | + |
|
Preference number: 5 (lower is better) Translates to: TASAPTVSCPVSCPI*FLAFTVTFLSDCKT Trigger: GGTCTTACAGTCTGACAGAAATGTAACAGTGAATGCAAGGAACCATATGGGGCAGCTCACTGGACAGCTGACAGTCGGAGCTGAAGCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | GGGAATTTCGTCTGGGTAATGTGTTCGTGCGTAGTTCACAGCCAGGTTCTGCAAAAGAGAAGGAACCGATaGGTAGATTTCCCAGCCGGA | + |
|
Preference number: 5 (lower is better) Translates to: GNFVWVMCSCVVHSQVLQKRRNR*VDFPAG Trigger: TCCGGCTGGGAAATCTACCAATCGGTTCCTTCTCTT...TTGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCAGACGAAATTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR CAA 90 bp | GGGAATTTCGTCTGGGTAATGTGTTCGTGCGTAGTTCACAGCCAGGTTCTGCAACTCACTTCGAATCTTTaGCACTGTGCCTCAACAGCT | + |
|
Preference number: 5 (lower is better) Translates to: GNFVWVMCSCVVHSQVLQLTSNL*HCASTA Trigger: AGCTGTTGAGGCACAGTGCAAAAGATTCGAAGTGAG...TTGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCAGACGAAATTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | AAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCCACGGCCGAGTCAGCCCTGCCATCTTCACTaGCTCTCACTTCGAATCTTT | + |
|
Preference number: 5 (lower is better) Translates to: KGCDPGFLLKMFFPRPSQPCHLH*LSLRIF Trigger: AAAGATTCGAAGTGAGAGCAAGTGAAGATGGCAGGG...CTGACTCGGCCGTGGGAAAAACATCTTCAGCAGAAAACCTGGATCGCAACCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | TTATTCTCCCTTTTGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTTTCCTGCAGGTAGCCTaGAAGTCACCTGCAGCTGCG | + |
|
Preference number: 5 (lower is better) Translates to: LFSLLSKGCDPGFLLKMFFLQVA*KSPAAA Trigger: CGCAGCTGCAGGTGACTTCAAGGCTACCTGCAGGAA...AAACATCTTCAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR CAA 90 bp | GCACCTAAATTATTCTCCCTTTTGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGCTCACTTCGAATCTTTaGCACTGTGCCTCAACAGCT | + |
|
Preference number: 5 (lower is better) Translates to: APKLFSLLSKGCDPGFLLLTSNL*HCASTA Trigger: AGCTGTTGAGGCACAGTGCAAAAGATTCGAAGTGAG...CAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAATTTAGGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | GCACCTAAATTATTCTCCCTTTTGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAATTTGAGGAGCTGGTaGAAGAAGAGAAGGAACCGA | + |
|
Preference number: 5 (lower is better) Translates to: APKLFSLLSKGCDPGFLLNLRSW*KKRRNR Trigger: TCGGTTCCTTCTCTTCTTCAACCAGCTCCTCAAATT...CAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAATTTAGGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS-3UTR CAA 90 bp | TTATTCTCCCTTTTGAGCAAAGGTTGCGATCCAGGTTTTCTGCTGAAGATGTTTGCCCCATATGGTTCCTaGCATTCACTGTTACATTTC | + |
|
Preference number: 5 (lower is better) Translates to: LFSLLSKGCDPGFLLKMFAPYGS*HSLLHF Trigger: GAAATGTAACAGTGAATGCAAGGAACCATATGGGGC...AAACATCTTCAGCAGAAAACCTGGATCGCAACCTTTGCTCAAAAGGGAGAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS TCA 90 bp | CAGGCAACTAGAGCTTTTCTACAACTTAAAGGAAGTAATATCATTTaGGCTGCAGTTCTCCCTGTAACCTTTAGCTTCTCAGCCCCAATA | + |
|
Preference number: 5 (lower is better) Translates to: QATRAFLQLKGSNII*AAVLPVTFSFSAPI Trigger: TATTGGGGCTGAGAAGCTAAAGGTTACAGGGAGAACTGCAGCTCAAATGATATTACTTCCTTTAAGTTGTAGAAAAGCTCTAGTTGCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||
| CDS-3UTR CAA 90 bp | TGGGTAATGTGTTCGTGCGTAGTTCACAGCCAGGTTCTGCAAAAATCTAAAACTGATTTCCCAGCCGGATaGAATCTGCATTTAAAAATA | + |
|
Preference number: 5 (lower is better) Translates to: WVMCSCVVHSQVLQKSKTDFPAG*NLHLKI Trigger: TATTTTTAAATGCAGATTCAATCCGGCTGGGAAATC...AGTTTTAGATTTTTGCAGAACCTGGCTGTGAACTACGCACGAACACATTACCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000118896.2 |
||
| CDS TCA 72 bp | CCTCAACAGCTTCAGCTCCGACTGTCAGCTGTCCAGTaGGCTGCCCCATATGGTTCCTTGCATTCACTGTTA | + |
|
Preference number: 6 (lower is better) Translates to: PQQLQLRLSAVQ*AAPYGSLHSLL Trigger: TAACAGTGAATGCAAGGAACCATATGGGGCAGCTCACTGGACAGCTGACAGTCGGAGCTGAAGCTGTTGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS CAA 72 bp | CCTCTTTCGCCATCCATAAATCCCCACAGGGTAGAGTaGTGCGTTTTCAGGTCTCGGCAGGTTGTTCTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: PLSPSINPHRVE*CVFRSRQVVLL Trigger: CAGCAGAACAACCTGCCGAGACCTGAAAACGCACAACTCTACCCTGTGGGGATTTATGGATGGCGAAAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS CAA 90 bp | GAAAACAGCACCCTGCCATCTTCACTTGCTCTCACTTCGAATCTTTaGCACTGTGCCTCAACAGCTTCAGCTCCGACTGTCAGCTGTCCA | + |
|
Preference number: 6 (lower is better) Translates to: ENSTLPSSLALTSNL*HCASTASAPTVSCP Trigger: TGGACAGCTGACAGTCGGAGCTGAAGCTGTTGAGGCACAGTGCAAAAGATTCGAAGTGAGAGCAAGTGAAGATGGCAGGGTGCTGTTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS GCA 72 bp | CTTTCGCCATCCATAAATCCCCACAGGGTAGAGTTGTaGGTTTTCAGGTCTCGGCAGGTTGTTCTGCTGTGT | + |
|
Preference number: 6 (lower is better) Translates to: LSPSINPHRVEL*VFRSRQVVLLC Trigger: ACACAGCAGAACAACCTGCCGAGACCTGAAAACGCACAACTCTACCCTGTGGGGATTTATGGATGGCGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS GCA 72 bp | CCCTGCCATCTTCACTTGCTCTCACTTCGAATCTTTTaGACTGTGCCTCAACAGCTTCAGCTCCGACTGTCA | + |
|
Preference number: 6 (lower is better) Translates to: PCHLHLLSLRIF*TVPQQLQLRLS Trigger: TGACAGTCGGAGCTGAAGCTGTTGAGGCACAGTGCAAAAGATTCGAAGTGAGAGCAAGTGAAGATGGCAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS CCA 72 bp | GCTCCGACTGTCAGCTGTCCAGTGAGCTGCCCCATATaGTTCCTTGCATTCACTGTTACATTTCTGTCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: APTVSCPVSCPI*FLAFTVTFLSD Trigger: GTCTGACAGAAATGTAACAGTGAATGCAAGGAACCATATGGGGCAGCTCACTGGACAGCTGACAGTCGGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS CAA 72 bp | TGCTGTGTGGCTAGTATGTATTGTTCTCGAGTCATCTaGAGCTCCTGGATGTCCAGGTCCGTGGATCTGTCC | + |
|
Preference number: 6 (lower is better) Translates to: CCVASMYCSRVI*SSWMSRSVDLS Trigger: GGACAGATCCACGGACCTGGACATCCAGGAGCTCAAGATGACTCGAGAACAATACATACTAGCCACACAGCA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS CAA 72 bp | ACCCTGCCATCTTCACTTGCTCTCACTTCGAATCTTTaGCACTGTGCCTCAACAGCTTCAGCTCCGACTGTC | + |
|
Preference number: 6 (lower is better) Translates to: TLPSSLALTSNL*HCASTASAPTV Trigger: GACAGTCGGAGCTGAAGCTGTTGAGGCACAGTGCAAAAGATTCGAAGTGAGAGCAAGTGAAGATGGCAGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS GCA 72 bp | ACAGCTTCAGCTCCGACTGTCAGCTGTCCAGTGAGCTaGCCCATATGGTTCCTTGCATTCACTGTTACATTT | + |
|
Preference number: 6 (lower is better) Translates to: TASAPTVSCPVS*PIWFLAFTVTF Trigger: AAATGTAACAGTGAATGCAAGGAACCATATGGGGCAGCTCACTGGACAGCTGACAGTCGGAGCTGAAGCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS GCA 72 bp | TTCATCTGCAGAAAACAGCACCCTGCCATCTTCACTTaGTCTCACTTCGAATCTTTTGCACTGTGCCTCAAC | + |
|
Preference number: 6 (lower is better) Translates to: FICRKQHPAIFT*SHFESFALCLN Trigger: GTTGAGGCACAGTGCAAAAGATTCGAAGTGAGAGCAAGTGAAGATGGCAGGGTGCTGTTTTCTGCAGATGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS CAA 72 bp | AGAAACTCAGATATACCTTCAAGTCGGATTCCCTTCTaGGTGACTCTCAGATTCCCCATACCATCCACAGTG | + |
|
Preference number: 6 (lower is better) Translates to: RNSDIPSSRIPF*VTLRFPIPSTV Trigger: CACTGTGGATGGTATGGGGAATCTGAGAGTCACCAAGAAGGGAATCCGACTTGAAGGTATATCTGAGTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS CAA 90 bp | AATGGTAGTAGAAACTCAGATATACCTTCAAGTCGGATTCCCTTCTaGGTGACTCTCAGATTCCCCATACCATCCACAGTGAAATTCATA | + |
|
Preference number: 6 (lower is better) Translates to: NGSRNSDIPSSRIPF*VTLRFPIPSTVKFI Trigger: TATGAATTTCACTGTGGATGGTATGGGGAATCTGAGAGTCACCAAGAAGGGAATCCGACTTGAAGGTATATCTGAGTTTCTACTACCATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118896.2 ENSMUST00000135764.8 |
||
| CDS TCA 72 bp | AGAGCTTTTCTACAACTTAAAGGAAGTAATATCATTTaGGCTGCAGTTCTCCCTGTAACCTTTAGCTTCTCA | + |
|
Preference number: 6 (lower is better) Translates to: RAFLQLKGSNII*AAVLPVTFSFS Trigger: TGAGAAGCTAAAGGTTACAGGGAGAACTGCAGCTCAAATGATATTACTTCCTTTAAGTTGTAGAAAAGCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135764.8 |
||