Pregenerated sensors for SGCB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029156Ensembl transcript IDs: ENSMUST00000081170.9
Found 114 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGCAGTGGGAGTCAGAGAGATCAAGTGTATCGCACCCAGGACAGTaGTCAGCAAGAAGAGGCCTGATGATGATGGCTTCTGTTGCTCAC | + |
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Preference number: 1 (lower is better) Translates to: VQWESERSSVSHPGQ*SARRGLMMMASVAH Trigger: GTGAGCAACAGAAGCCATCATCATCAGGCCTCTTCTTGCTGAGCACTGTCCTGGGTGCGATACACTTGATCTCTCTGACTCCCACTGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR GCA 90 bp | TACTGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTCCTTCCTaGACCTACCTTCCCCAGCGCTGCAGTAAGTCCTCTCAGTGTGCT | + |
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Preference number: 1 (lower is better) Translates to: YCLLNVCLLSSLGPS*TYLPQRCSKSSQCA Trigger: AGCACACTGAGAGGACTTACTGCAGCGCTGGGGAAGGTAGGTGCAGGAAGGACCCAGGGAGGAAAGCAAACACACATTTAACAGACAGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR TCA 90 bp | AAGTCCTCTCAGTGTGCTATGTTCAAAACCGAAGAAATGAACACATaGGAAGGCATACGCCCCCTGGTGGCCAGATTTAACAGTGCCGCT | + |
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Preference number: 1 (lower is better) Translates to: KSSQCAMFKTEEMNT*EGIRPLVARFNSAA Trigger: AGCGGCACTGTTAAATCTGGCCACCAGGGGGCGTATGCCTTCTCATGTGTTCATTTCTTCGGTTTTGAACATAGCACACTGAGAGGACTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR TCA 90 bp | GCTGCAGTAAGTCCTCTCAGTGTGCTATGTTCAAAACCGAAGAAATaGACACATGAGAAGGCATACGCCCCCTGGTGGCCAGATTTAACA | + |
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Preference number: 1 (lower is better) Translates to: AAVSPLSVLCSKPKK*THEKAYAPWWPDLT Trigger: TGTTAAATCTGGCCACCAGGGGGCGTATGCCTTCTCATGTGTTCATTTCTTCGGTTTTGAACATAGCACACTGAGAGGACTTACTGCAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR CCA 90 bp | TCCTTCTCTGTAGCTAGGCCCATGGTGCCTCCCTACTGTCTGCTTTaGAGCTATGCATTATTCTTCATCCCCAATCCCATGTTTCTTAGT | + |
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Preference number: 1 (lower is better) Translates to: SFSVARPMVPPYCLL*SYALFFIPNPMFLS Trigger: ACTAAGAAACATGGGATTGGGGATGAAGAATAATGCATAGCTCCAAAGCAGACAGTAGGGAGGCACCATGGGCCTAGCTACAGAGAAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR TCA 90 bp | TCGTGTATATTAATTTCTAGGCACACACAGAATTCTTCTAAAGGGTaGTGCTGGTATGGGACACAGGAGGAACAACCTCTGGACAGCAGG | + |
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Preference number: 1 (lower is better) Translates to: SCILISRHTQNSSKG*CWYGTQEEQPLDSR Trigger: CCTGCTGTCCAGAGGTTGTTCCTCCTGTGTCCCATACCAGCATCACCCTTTAGAAGAATTCTGTGTGTGCCTAGAAATTAATATACACGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR GCA 90 bp | AACCACGCGCTTTACAGAGCAGCAGGATATGCTCAAACTTCAAAGTaGTCAATGGAGATGTATCAAAACACAAGTGTTTCCCACAGACGT | + |
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Preference number: 1 (lower is better) Translates to: NHALYRAAGYAQTSK*SMEMYQNTSVSHRR Trigger: ACGTCTGTGGGAAACACTTGTGTTTTGATACATCTCCATTGAGCACTTTGAAGTTTGAGCATATCCTGCTGCTCTGTAAAGCGCGTGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR CCA 90 bp | GACATCTTAGAACTGGCTCAAGAGAGTTTAAAGTCTGACAGTGATTaGTCATGTTTTTCTAGCATTGGCATTTTAACTAGAGTAGCACAC | + |
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Preference number: 1 (lower is better) Translates to: DILELAQESLKSDSD*SCFSSIGILTRVAH Trigger: GTGTGCTACTCTAGTTAAAATGCCAATGCTAGAAAAACATGACCAATCACTGTCAGACTTTAAACTCTCTTGAGCCAGTTCTAAGATGTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR CCA 90 bp | ATAAATTGCTCTCTTTCTTTACATCTAAAATCTGCACTTAGTGTCTaGTCTCCAGTCAACTCTCACCTTAGCCTGAGTTCACAGTCTATA | + |
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Preference number: 1 (lower is better) Translates to: INCSLSLHLKSALSV*SPVNSHLSLSSQSI Trigger: TATAGACTGTGAACTCAGGCTAAGGTGAGAGTTGACTGGAGACCAGACACTAAGTGCAGATTTTAGATGTAAAGAAAGAGAGCAATTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTCCTCCCTGGGTCCTTCCTGCACCTACCTTCCCCAGCGCTGCAGTAAGTCCGCATACGCCCCCTGGTaGCCAGATTTAACAGTGCCG | + |
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Preference number: 2 (lower is better) Translates to: LSSLGPSCTYLPQRCSKSAYAPW*PDLTVP Trigger: CGGCACTGTTAAATCTGGCCACCAGGGGGCGTATGC...GGACTTACTGCAGCGCTGGGGAAGGTAGGTGCAGGAAGGACCCAGGGAGGAAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR TCA 90 bp | CTTTCCTCCCTGGGTCCTTCCTGCACCTACCTTCCCCAGCGCTGCAGTAAGTCCAAAATGAGACTGAGGTaGGGAGCAGAGATCAAGGTT | + |
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Preference number: 2 (lower is better) Translates to: LSSLGPSCTYLPQRCSKSKMRLR*GAEIKV Trigger: AACCTTGATCTCTGCTCCTCACCTCAGTCTCATTTT...GGACTTACTGCAGCGCTGGGGAAGGTAGGTGCAGGAAGGACCCAGGGAGGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTCCTCCCTGGGTCCTTCCTGCACCTACCTTCCCCAGCGCTGCAGTAAGTCCCTTCAAAGTGCTCAATaGAGATGTATCAAAACACAA | + |
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Preference number: 2 (lower is better) Translates to: LSSLGPSCTYLPQRCSKSLQSAQ*RCIKTQ Trigger: TTGTGTTTTGATACATCTCCATTGAGCACTTTGAAG...GGACTTACTGCAGCGCTGGGGAAGGTAGGTGCAGGAAGGACCCAGGGAGGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR CCA 90 bp | CGCTTTACAGAGCAGCAGGATATGCTCAAACTTCAAAGTGCTCAATGGAGATGTAGGGTGATGCTGGTATaGGACACAGGAGGAACAACC | + |
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Preference number: 2 (lower is better) Translates to: RFTEQQDMLKLQSAQWRCRVMLV*DTGGTT Trigger: GGTTGTTCCTCCTGTGTCCCATACCAGCATCACCCT...ACATCTCCATTGAGCACTTTGAAGTTTGAGCATATCCTGCTGCTCTGTAAAGCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR CCA 90 bp | GTCAGTGTGTCAGAGGGTCTACCCAAAATGCAGTCTAAAATAGCATACCTAGTAAGGAGGAACAACCTCTaGACAGCAGGACCTACTGAG | + |
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Preference number: 2 (lower is better) Translates to: VSVSEGLPKMQSKIAYLVRRNNL*TAGPTE Trigger: CTCAGTAGGTCCTGCTGTCCAGAGGTTGTTCCTCCT...TACTAGGTATGCTATTTTAGACTGCATTTTGGGTAGACCCTCTGACACACTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR GCA 90 bp | TATTCACCTCTCGAATACTGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTCAAGCTCCGCTTCTCTaGTTTCAGGTCAGTGTGTCA | + |
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Preference number: 2 (lower is better) Translates to: YSPLEYCLLNVCLLSSLGQAPLL*FQVSVS Trigger: TGACACACTGACCTGAAAGCAGAGAAGCGGAGCTTG...ACCCAGGGAGGAAAGCAAACACACATTTAACAGACAGTATTCGAGAGGTGAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR CCA 90 bp | AGAGTACCAACATCCTTCTCTGTAGCTAGGCCCATGGTGCCTCCCTACTGTCTGAACGCTGTACAAACATaGTTCACATGCATTCTTAAA | + |
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Preference number: 2 (lower is better) Translates to: RVPTSFSVARPMVPPYCLNAVQT*FTCILK Trigger: TTTAAGAATGCATGTGAACCATGTTTGTACAGCGTT...CAGACAGTAGGGAGGCACCATGGGCCTAGCTACAGAGAAGGATGTTGGTACTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR TCA 90 bp | CAAACTTCAAAGTGCTCAATGGAGATGTATCAAAACACAAGTGTTTCCCACAGATCAGGTACTCCCACATaGCAAGCAGACCAAGCTGGT | + |
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Preference number: 2 (lower is better) Translates to: QTSKCSMEMYQNTSVSHRSGTPT*QADQAG Trigger: ACCAGCTTGGTCTGCTTGTCATGTGGGAGTACCTGA...TCTGTGGGAAACACTTGTGTTTTGATACATCTCCATTGAGCACTTTGAAGTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR GCA 90 bp | TATTCACCTCTCGAATACTGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTTGCCTCCCTACTGTCTaGTTTGGAGCTATGCATTAT | + |
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Preference number: 2 (lower is better) Translates to: YSPLEYCLLNVCLLSSLGCLPTV*FGAMHY Trigger: ATAATGCATAGCTCCAAAGCAGACAGTAGGGAGGCA...ACCCAGGGAGGAAAGCAAACACACATTTAACAGACAGTATTCGAGAGGTGAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR TCA 90 bp | CAAACTTCAAAGTGCTCAATGGAGATGTATCAAAACACAAGTGTTTCCCACAGAAATTCTTCTAAAGGGTaGTGCTGGTATGGGACACAG | + |
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Preference number: 2 (lower is better) Translates to: QTSKCSMEMYQNTSVSHRNSSKG*CWYGTQ Trigger: CTGTGTCCCATACCAGCATCACCCTTTAGAAGAATT...TCTGTGGGAAACACTTGTGTTTTGATACATCTCCATTGAGCACTTTGAAGTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR GCA 90 bp | TATTCACCTCTCGAATACTGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTTCTGCTTTGGAGCTATaGATTATTCTTCATCCCCAA | + |
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Preference number: 2 (lower is better) Translates to: YSPLEYCLLNVCLLSSLGSALEL*IILHPQ Trigger: TTGGGGATGAAGAATAATGCATAGCTCCAAAGCAGA...ACCCAGGGAGGAAAGCAAACACACATTTAACAGACAGTATTCGAGAGGTGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR TCA 90 bp | TATTCACCTCTCGAATACTGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTGTTTTAGAGAACTGTTaGGTATCAGTGCAACTTACT | + |
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Preference number: 2 (lower is better) Translates to: YSPLEYCLLNVCLLSSLGVLENC*VSVQLT Trigger: AGTAAGTTGCACTGATACTCAACAGTTCTCTAAAAC...ACCCAGGGAGGAAAGCAAACACACATTTAACAGACAGTATTCGAGAGGTGAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR GCA 90 bp | GTCAGTGTGTCAGAGGGTCTACCCAAAATGCAGTCTAAAATAGCATACCTAGTAGCTCAAACTTCAAAGTaGTCAATGGAGATGTATCAA | + |
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Preference number: 2 (lower is better) Translates to: VSVSEGLPKMQSKIAYLVAQTSK*SMEMYQ Trigger: TTGATACATCTCCATTGAGCACTTTGAAGTTTGAGC...TACTAGGTATGCTATTTTAGACTGCATTTTGGGTAGACCCTCTGACACACTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR CCA 90 bp | CAAACTTCAAAGTGCTCAATGGAGATGTATCAAAACACAAGTGTTTCCCACAGACCCTACTGTCTGCTTTaGAGCTATGCATTATTCTTC | + |
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Preference number: 2 (lower is better) Translates to: QTSKCSMEMYQNTSVSHRPYCLL*SYALFF Trigger: GAAGAATAATGCATAGCTCCAAAGCAGACAGTAGGG...TCTGTGGGAAACACTTGTGTTTTGATACATCTCCATTGAGCACTTTGAAGTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR CAA 90 bp | TGGACAGTCTGGAAGGGGTCTTCTTTTTATTTCTATCTCTTTGCATaGATATTCACCTCTCGAATACTGTCTGTTAAATGTGTGTTTGCT | + |
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Preference number: 2 (lower is better) Translates to: WTVWKGSSFYFYLFA*IFTSRILSVKCVFA Trigger: AGCAAACACACATTTAACAGACAGTATTCGAGAGGTGAATATCAATGCAAAGAGATAGAAATAAAAAGAAGACCCCTTCCAGACTGTCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR GCA 90 bp | GACAGTGATTGGTCATGTTTTTCTAGCATTGGCATTTTAACTAGAGTAGCACACCAAACATGGTTCACATaGATTCTTAAAAAGGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: DSDWSCFSSIGILTRVAHQTWFT*ILKKGK Trigger: CTTCCCCTTTTTAAGAATGCATGTGAACCATGTTTG...GTGTGCTACTCTAGTTAAAATGCCAATGCTAGAAAAACATGACCAATCACTGTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR CAA 90 bp | CTTTCCTCCCTGGGTCCTTCCTGCACCTACCTTCCCCAGCGCTGCAGTAAGTCCTCAGGTTTACCTGGGTaGGAATTGTACTTGACTCCC | + |
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Preference number: 3 (lower is better) Translates to: LSSLGPSCTYLPQRCSKSSGLPG*ELYLTP Trigger: GGGAGTCAAGTACAATTCCAACCCAGGTAAACCTGA...GGACTTACTGCAGCGCTGGGGAAGGTAGGTGCAGGAAGGACCCAGGGAGGAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR CAA 90 bp | CTTTCCTCCCTGGGTCCTTCCTGCACCTACCTTCCCCAGCGCTGCAGTAAGTCCAAGGCAGAAACACATTaGGAATCAGGTTTACCTGGG | + |
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Preference number: 3 (lower is better) Translates to: LSSLGPSCTYLPQRCSKSKAETH*ESGLPG Trigger: CCCAGGTAAACCTGATTCCAAATGTGTTTCTGCCTT...GGACTTACTGCAGCGCTGGGGAAGGTAGGTGCAGGAAGGACCCAGGGAGGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR CCA 72 bp | AAGCTGGGATCGAAGCCCTTGCTTAGAGAGGTGCAGTaGGAGTCAGAGAGATCAAGTGTATCGCACCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: KLGSKPLLREVQ*ESERSSVSHPG Trigger: TCCTGGGTGCGATACACTTGATCTCTCTGACTCCCACTGCACCTCTCTAAGCAAGGGCTTCGATCCCAGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR GCA 72 bp | GAGTCAGAGAGATCAAGTGTATCGCACCCAGGACAGTaGTCAGCAAGAAGAGGCCTGATGATGATGGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: ESERSSVSHPGQ*SARRGLMMMAS Trigger: AGAAGCCATCATCATCAGGCCTCTTCTTGCTGAGCACTGTCCTGGGTGCGATACACTTGATCTCTCTGACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR CCA 72 bp | GTTGGAATTGTACTTGACTCCCAACCCTGTATAGTATaGGGCAGCATCCTGAACCTCGCTGACCTTCAGTTT | + |
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Preference number: 3 (lower is better) Translates to: VGIVLDSQPCIV*GSILNLADLQF Trigger: AAACTGAAGGTCAGCGAGGTTCAGGATGCTGCCCCATACTATACAGGGTTGGGAGTCAAGTACAATTCCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR TCA 72 bp | CAGTGTGCTATGTTCAAAACCGAAGAAATGAACACATaGGAAGGCATACGCCCCCTGGTGGCCAGATTTAAC | + |
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Preference number: 3 (lower is better) Translates to: QCAMFKTEEMNT*EGIRPLVARFN Trigger: GTTAAATCTGGCCACCAGGGGGCGTATGCCTTCTCATGTGTTCATTTCTTCGGTTTTGAACATAGCACACTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR TCA 72 bp | TTAATTTCTAGGCACACACAGAATTCTTCTAAAGGGTaGTGCTGGTATGGGACACAGGAGGAACAACCTCTG | + |
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Preference number: 3 (lower is better) Translates to: LISRHTQNSSKG*CWYGTQEEQPL Trigger: CAGAGGTTGTTCCTCCTGTGTCCCATACCAGCATCACCCTTTAGAAGAATTCTGTGTGTGCCTAGAAATTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR GCA 72 bp | CAAGTTATGGCAAACGCTGTACAAACATGGTTCACATaGATTCTTAAAAAGGGGAAGGTCAAGTCAGATCTG | + |
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Preference number: 3 (lower is better) Translates to: QVMANAVQTWFT*ILKKGKVKSDL Trigger: CAGATCTGACTTGACCTTCCCCTTTTTAAGAATGCATGTGAACCATGTTTGTACAGCGTTTGCCATAACTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR GCA 72 bp | GCAGAGATCAAGGTTTTATACCTAGCTAAAATGACCTaGGTCATCTTTCCAGTTAGCACCCTTTATTCTCGT | + |
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Preference number: 3 (lower is better) Translates to: AEIKVLYLAKMT*VIFPVSTLYSR Trigger: ACGAGAATAAAGGGTGCTAACTGGAAAGATGACGCAGGTCATTTTAGCTAGGTATAAAACCTTGATCTCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR CCA 72 bp | TCTCTTTCTTTACATCTAAAATCTGCACTTAGTGTCTaGTCTCCAGTCAACTCTCACCTTAGCCTGAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: SLSLHLKSALSV*SPVNSHLSLSS Trigger: TGAACTCAGGCTAAGGTGAGAGTTGACTGGAGACCAGACACTAAGTGCAGATTTTAGATGTAAAGAAAGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| 3UTR-3UTR CAA 90 bp | CAAACTTCAAAGTGCTCAATGGAGATGTATCAAAACACAAGTGTTTCCCACAGAAACCACTTCAGCCCTTaGTCCTCTAGGACAAGATAT | + |
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Preference number: 3 (lower is better) Translates to: QTSKCSMEMYQNTSVSHRNHFSP*SSRTRY Trigger: ATATCTTGTCCTAGAGGACAAAGGGCTGAAGTGGTT...TCTGTGGGAAACACTTGTGTTTTGATACATCTCCATTGAGCACTTTGAAGTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR TCA 90 bp | CTTTCCTCCCTGGGTCCTTCCTGCACCTACCTTCCCCAGCGCTGCAGTAAGTCCCTGTTACTTGTACTTTaGAGAGTGTGCCATCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: LSSLGPSCTYLPQRCSKSLLLVL*RVCHLH Trigger: GTGCAGATGGCACACTCTTCAAAGTACAAGTAACAG...GGACTTACTGCAGCGCTGGGGAAGGTAGGTGCAGGAAGGACCCAGGGAGGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CCA 90 bp | CGCTTTACAGAGCAGCAGGATATGCTCAAACTTCAAAGTGCTCAATGGAGATGTCTGACTGGTCCCCGCTaGAGGAACTGGGCAGGCGCG | + |
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Preference number: 4 (lower is better) Translates to: RFTEQQDMLKLQSAQWRCLTGPR*RNWAGA Trigger: CGCGCCTGCCCAGTTCCTCCAGCGGGGACCAGTCAG...ACATCTCCATTGAGCACTTTGAAGTTTGAGCATATCCTGCTGCTCTGTAAAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR TCA 90 bp | AGAGTACCAACATCCTTCTCTGTAGCTAGGCCCATGGTGCCTCCCTACTGTCTGTGGCAGCCCATGTTGTaGCCTGTTACTTGTACTTTG | + |
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Preference number: 4 (lower is better) Translates to: RVPTSFSVARPMVPPYCLWQPML*PVTCTL Trigger: CAAAGTACAAGTAACAGGTCACAACATGGGCTGCCA...CAGACAGTAGGGAGGCACCATGGGCCTAGCTACAGAGAAGGATGTTGGTACTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CCA 90 bp | AGAGTACCAACATCCTTCTCTGTAGCTAGGCCCATGGTGCCTCCCTACTGTCTGTGGAAGACAATTGGCTaGTTGTTGCCAGTGATGACC | + |
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Preference number: 4 (lower is better) Translates to: RVPTSFSVARPMVPPYCLWKTIG*LLPVMT Trigger: GGTCATCACTGGCAACAACCAGCCAATTGTCTTCCA...CAGACAGTAGGGAGGCACCATGGGCCTAGCTACAGAGAAGGATGTTGGTACTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CCA 90 bp | AGAGTACCAACATCCTTCTCTGTAGCTAGGCCCATGGTGCCTCCCTACTGTCTGACTTTTCACCCCACTTaGCAGATGAAACTCGTGCGT | + |
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Preference number: 4 (lower is better) Translates to: RVPTSFSVARPMVPPYCLTFHPT*QMKLVR Trigger: ACGCACGAGTTTCATCTGCCAAGTGGGGTGAAAAGT...CAGACAGTAGGGAGGCACCATGGGCCTAGCTACAGAGAAGGATGTTGGTACTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR TCA 90 bp | CAAACTTCAAAGTGCTCAATGGAGATGTATCAAAACACAAGTGTTTCCCACAGACCAGTCACCACTCCCTaGCTGGTCCCCGCTGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: QTSKCSMEMYQNTSVSHRPVTTP*LVPAGG Trigger: TCCTCCAGCGGGGACCAGTCAGGGAGTGGTGACTGG...TCTGTGGGAAACACTTGTGTTTTGATACATCTCCATTGAGCACTTTGAAGTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR TCA 90 bp | GTCAGTGTGTCAGAGGGTCTACCCAAAATGCAGTCTAAAATAGCATACCTAGTACCCACAAGGGTTGTCTaGGACCTGGCAGCCCATGTT | + |
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Preference number: 4 (lower is better) Translates to: VSVSEGLPKMQSKIAYLVPTRVV*DLAAHV Trigger: AACATGGGCTGCCAGGTCTCAGACAACCCTTGTGGG...TACTAGGTATGCTATTTTAGACTGCATTTTGGGTAGACCCTCTGACACACTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR TCA 90 bp | AGAGTACCAACATCCTTCTCTGTAGCTAGGCCCATGGTGCCTCCCTACTGTCTGGGATATATCCAGCTTTaGAATTGCTGTTGTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: RVPTSFSVARPMVPPYCLGYIQL*NCCCAL Trigger: AAGAGCACAACAGCAATTTCAAAGCTGGATATATCC...CAGACAGTAGGGAGGCACCATGGGCCTAGCTACAGAGAAGGATGTTGGTACTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CCA 90 bp | GTGTCCCTGTCTCTCCAAACATCTCTAGTGGATCTCTCCCTTAGAATGACCAAGTTTCAACACTCAGCTTaGTCGTCCCTTGCTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: VSLSLQTSLVDLSLRMTKFQHSA*SSLAGR Trigger: TCTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAA...CTTGGTCATTCTAAGGGAGAGATCCACTAGAGATGTTTGGAGAGACAGGGACAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CCA 90 bp | GACAGTGATTGGTCATGTTTTTCTAGCATTGGCATTTTAACTAGAGTAGCACACTCACCACTCCCTGACTaGTCCCCGCTGGAGGAACTG | + |
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Preference number: 4 (lower is better) Translates to: DSDWSCFSSIGILTRVAHSPLPD*SPLEEL Trigger: CAGTTCCTCCAGCGGGGACCAGTCAGGGAGTGGTGA...GTGTGCTACTCTAGTTAAAATGCCAATGCTAGAAAAACATGACCAATCACTGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CCA 90 bp | GTGTCCCTGTCTCTCCAAACATCTCTAGTGGATCTCTCCCTTAGAATGACCAAGTTGCTGGAAGACAATTaGCTGGTTGTTGCCAGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: VSLSLQTSLVDLSLRMTKLLEDN*LVVASD Trigger: ATCACTGGCAACAACCAGCCAATTGTCTTCCAGCAA...CTTGGTCATTCTAAGGGAGAGATCCACTAGAGATGTTTGGAGAGACAGGGACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR CCA 90 bp | CGCTTTACAGAGCAGCAGGATATGCTCAAACTTCAAAGTGCTCAATGGAGATGTTTGGTCGTCCCTTGCTaGAAGACAATTGGCTGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: RFTEQQDMLKLQSAQWRCLVVPC*KTIGWL Trigger: CAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAA...ACATCTCCATTGAGCACTTTGAAGTTTGAGCATATCCTGCTGCTCTGTAAAGCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR TCA 90 bp | GTCAGTGTGTCAGAGGGTCTACCCAAAATGCAGTCTAAAATAGCATACCTAGTATATAAAGCGGGTGGATaGCGCCCATGTCAGACACTT | + |
|
Preference number: 4 (lower is better) Translates to: VSVSEGLPKMQSKIAYLVYKAGG*RPCQTL Trigger: AAGTGTCTGACATGGGCGTCATCCACCCGCTTTATA...TACTAGGTATGCTATTTTAGACTGCATTTTGGGTAGACCCTCTGACACACTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR GCA 90 bp | CGCTTTACAGAGCAGCAGGATATGCTCAAACTTCAAAGTGCTCAATGGAGATGTGAAGAGTGTGCCATCTaGACACATGCAGAGCTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: RFTEQQDMLKLQSAQWRCEECAI*THAELV Trigger: TACAAGCTCTGCATGTGTGCAGATGGCACACTCTTC...ACATCTCCATTGAGCACTTTGAAGTTTGAGCATATCCTGCTGCTCTGTAAAGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| 3UTR CAA 72 bp | TATTCACCTCTCGAATACTGTCTGTTAAATGTGTGTTaGCTTTCCTCCCTGGGTCCTTCCTGCACCTACCTT | + |
|
Preference number: 4 (lower is better) Translates to: YSPLEYCLLNVC*LSSLGPSCTYL Trigger: AAGGTAGGTGCAGGAAGGACCCAGGGAGGAAAGCAAACACACATTTAACAGACAGTATTCGAGAGGTGAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| 3UTR CAA 72 bp | TGCAAGAAGATTGCCACCGAAGAATATTTTAAAAGGTaGCCGAGTCGGCAGGTAGCTCCTGCTTTGTGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: CKKIATEEYFKR*PSRQVAPALCC Trigger: ACAACACAAAGCAGGAGCTACCTGCCGACTCGGCAACCTTTTAAAATATTCTTCGGTGGCAATCTTCTTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR TCA 90 bp | CGCTTTACAGAGCAGCAGGATATGCTCAAACTTCAAAGTGCTCAATGGAGATGTACATCTCCTCCCATGTaGAATTCAATGGTTTTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: RFTEQQDMLKLQSAQWRCTSPPM*NSMVLP Trigger: GGGCAAAACCATTGAATTTCACATGGGAGGAGATGT...ACATCTCCATTGAGCACTTTGAAGTTTGAGCATATCCTGCTGCTCTGTAAAGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| 3UTR CAA 72 bp | CTCCCACATGACAAGCAGACCAAGCTGGTCTGTCTATaGAATGACATCTTAGAACTGGCTCAAGAGAGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: LPHDKQTKLVCL*NDILELAQESL Trigger: TAAACTCTCTTGAGCCAGTTCTAAGATGTCATTCAATAGACAGACCAGCTTGGTCTGCTTGTCATGTGGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR TCA 90 bp | TATTCACCTCTCGAATACTGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTTCAGTCGATGCTTTCTaGACGTTCAAACTTTTCACC | + |
|
Preference number: 4 (lower is better) Translates to: YSPLEYCLLNVCLLSSLGSVDAF*TFKLFT Trigger: GGTGAAAAGTTTGAACGTTCAGAAAGCATCGACTGA...ACCCAGGGAGGAAAGCAAACACACATTTAACAGACAGTATTCGAGAGGTGAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| 3UTR CAA 72 bp | GGCTTACTGATGGAGTGTCTCAACCACTTCAGCCCTTaGTCCTCTAGGACAAGATATAGTAGAATGTTAAAA | + |
|
Preference number: 4 (lower is better) Translates to: GLLMECLNHFSP*SSRTRYSRMLK Trigger: TTTTAACATTCTACTATATCTTGTCCTAGAGGACAAAGGGCTGAAGTGGTTGAGACACTCCATCAGTAAGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| 3UTR CAA 72 bp | TGGAAGGGGTCTTCTTTTTATTTCTATCTCTTTGCATaGATATTCACCTCTCGAATACTGTCTGTTAAATGT | + |
|
Preference number: 4 (lower is better) Translates to: WKGSSFYFYLFA*IFTSRILSVKC Trigger: ACATTTAACAGACAGTATTCGAGAGGTGAATATCAATGCAAAGAGATAGAAATAAAAAGAAGACCCCTTCCA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CCA 90 bp | TCCGCTCCACAGCCTTCTCCCGCATGGATTTCTTCACTGGCCCGTTaGACCCTTGCTGCTCGGTCGCTGCCGCCGCCGCCGCCGCTGCCG | + |
|
Preference number: 5 (lower is better) Translates to: SAPQPSPAWISSLAR*TLAARSLPPPPPLP Trigger: CGGCAGCGGCGGCGGCGGCGGCAGCGACCGAGCAGCAAGGGTCCAACGGGCCAGTGAAGAAATCCATGCGGGAGAAGGCTGTGGAGCGGA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS TCA 90 bp | ATCTGCACACATGCAGAGCTTGTAGCGCACCCAGTCACCACTCCCTaGCTGGTCCCCGCTGGAGGAACTGGGCAGGCGCGTAGGGCTGAC | + |
|
Preference number: 5 (lower is better) Translates to: ICTHAELVAHPVTTP*LVPAGGTGQARRAD Trigger: GTCAGCCCTACGCGCCTGCCCAGTTCCTCCAGCGGGGACCAGTCAGGGAGTGGTGACTGGGTGCGCTACAAGCTCTGCATGTGTGCAGAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CCA 90 bp | ACGCCCATGTCAGACACTTGCTTGAACCTCAGCAGACCGCTCTCGTaGAACTCCATGCTATCACACCCATTTGGCCCAATGCGGATCACC | + |
|
Preference number: 5 (lower is better) Translates to: TPMSDTCLNLSRPLS*NSMLSHPFGPMRIT Trigger: GGTGATCCGCATTGGGCCAAATGGGTGTGATAGCATGGAGTTCCACGAGAGCGGTCTGCTGAGGTTCAAGCAAGTGTCTGACATGGGCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR CAA 90 bp | CTTTCCTCCCTGGGTCCTTCCTGCACCTACCTTCCCCAGCGCTGCAGTAAGTCCGTGCTGAACAGGATATaGTGTGTCCTTGGGTCAAAA | + |
|
Preference number: 5 (lower is better) Translates to: LSSLGPSCTYLPQRCSKSVLNRI*CVLGSK Trigger: TTTTGACCCAAGGACACACAATATCCTGTTCAGCAC...GGACTTACTGCAGCGCTGGGGAAGGTAGGTGCAGGAAGGACCCAGGGAGGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CCA 90 bp | ACGCAGATGGCTAAGTTGCCCTTTCGCCCCCTCAGCCCAGTCTTATaGAGCCGGTCCTCATCGATGGGGATATATCCAGCTTTGAAATTG | + |
|
Preference number: 5 (lower is better) Translates to: TQMAKLPFRPLSPVL*SRSSSMGIYPALKL Trigger: CAATTTCAAAGCTGGATATATCCCCATCGATGAGGACCGGCTCCATAAGACTGGGCTGAGGGGGCGAAAGGGCAACTTAGCCATCTGCGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR CAA 90 bp | GTGTCCCTGTCTCTCCAAACATCTCTAGTGGATCTCTCCCTTAGAATGACCAAGACGCAGATGGCTAAGTaGCCCTTTCGCCCCCTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: VSLSLQTSLVDLSLRMTKTQMAK*PFRPLS Trigger: GCTGAGGGGGCGAAAGGGCAACTTAGCCATCTGCGT...CTTGGTCATTCTAAGGGAGAGATCCACTAGAGATGTTTGGAGAGACAGGGACAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS TCA 90 bp | TGTCTGAGACCTGGCAGCCCATGTTGTGACCTGTTACTTGTACTTTaGAGAGTGTGCCATCTGCACACATGCAGAGCTTGTAGCGCACCC | + |
|
Preference number: 5 (lower is better) Translates to: CLRPGSPCCDLLLVL*RVCHLHTCRACSAP Trigger: GGGTGCGCTACAAGCTCTGCATGTGTGCAGATGGCACACTCTTCAAAGTACAAGTAACAGGTCACAACATGGGCTGCCAGGTCTCAGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR CAA 90 bp | AGAGTACCAACATCCTTCTCTGTAGCTAGGCCCATGGTGCCTCCCTACTGTCTGAACTTTTCACCCCACTaGGCAGATGAAACTCGTGCG | + |
|
Preference number: 5 (lower is better) Translates to: RVPTSFSVARPMVPPYCLNFSPH*ADETRA Trigger: CGCACGAGTTTCATCTGCCAAGTGGGGTGAAAAGTT...CAGACAGTAGGGAGGCACCATGGGCCTAGCTACAGAGAAGGATGTTGGTACTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR CAA 90 bp | AGAGTACCAACATCCTTCTCTGTAGCTAGGCCCATGGTGCCTCCCTACTGTCTGAAGTCACTGGTAGCATaGCTGGTAATCCTTTCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: RVPTSFSVARPMVPPYCLKSLVA*LVILSV Trigger: GACTGAAAGGATTACCAGCAATGCTACCAGTGACTT...CAGACAGTAGGGAGGCACCATGGGCCTAGCTACAGAGAAGGATGTTGGTACTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS GCA 90 bp | GTGATGGAGGTCTTGTTCTTTTCAACACTCAGCTTGGTCGTCCCTTaGTGGAAGACAATTGGCTGGTTGTTGCCAGTGATGACCAGGTTT | + |
|
Preference number: 5 (lower is better) Translates to: VMEVLFFSTLSLVVP*WKTIGWLLPVMTRF Trigger: AAACCTGGTCATCACTGGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAAAGAACAAGACCTCCATCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR CAA 90 bp | GTGTCCCTGTCTCTCCAAACATCTCTAGTGGATCTCTCCCTTAGAATGACCAAGAAGACAATTGGCTGGTaGTTGCCAGTGATGACCAGG | + |
|
Preference number: 5 (lower is better) Translates to: VSLSLQTSLVDLSLRMTKKTIGW*LPVMTR Trigger: CCTGGTCATCACTGGCAACAACCAGCCAATTGTCTT...CTTGGTCATTCTAAGGGAGAGATCCACTAGAGATGTTTGGAGAGACAGGGACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CCA 90 bp | ATGGAGGTCTTGTTCTTTTCAACACTCAGCTTGGTCGTCCCTTGCTaGAAGACAATTGGCTGGTTGTTGCCAGTGATGACCAGGTTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: MEVLFFSTLSLVVPC*KTIGWLLPVMTRFS Trigger: TGAAAACCTGGTCATCACTGGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAAAGAACAAGACCTCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CCA 90 bp | CCTTTCAGTCGATGCTTTCTGAACGTTCAAACTTTTCACCCCACTTaGCAGATGAAACTCGTGCGTCTCATAGTCCGTGCTGAACAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: PFSRCFLNVQTFHPT*QMKLVRLIVRAEQD Trigger: ATCCTGTTCAGCACGGACTATGAGACGCACGAGTTTCATCTGCCAAGTGGGGTGAAAAGTTTGAACGTTCAGAAAGCATCGACTGAAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CAA 90 bp | GTGTCCCTGTCTCTCCAAACATCTCTAGTGGATCTCTCCCTTAGAATGACCAAGTTGCTGTTGTGCTCTTaGTTAACATTCCTCCGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: VSLSLQTSLVDLSLRMTKLLLCS*LTFLRS Trigger: GGAGCGGAGGAATGTTAACAAAGAGCACAACAGCAA...CTTGGTCATTCTAAGGGAGAGATCCACTAGAGATGTTTGGAGAGACAGGGACAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CAA 90 bp | AGAGTACCAACATCCTTCTCTGTAGCTAGGCCCATGGTGCCTCCCTACTGTCTGTATCCAGCTTTGAAATaGCTGTTGTGCTCTTTGTTA | + |
|
Preference number: 5 (lower is better) Translates to: RVPTSFSVARPMVPPYCLYPALK*LLCSLL Trigger: TAACAAAGAGCACAACAGCAATTTCAAAGCTGGATA...CAGACAGTAGGGAGGCACCATGGGCCTAGCTACAGAGAAGGATGTTGGTACTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CAA 90 bp | GTCAGTGTGTCAGAGGGTCTACCCAAAATGCAGTCTAAAATAGCATACCTAGTATTTTCAACACTCAGCTaGGTCGTCCCTTGCTGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: VSVSEGLPKMQSKIAYLVFSTLS*VVPCWK Trigger: CTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAAA...TACTAGGTATGCTATTTTAGACTGCATTTTGGGTAGACCCTCTGACACACTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CAA 90 bp | TATTCACCTCTCGAATACTGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTCTGGTGATGGAGGTCTaGTTCTTTTCAACACTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: YSPLEYCLLNVCLLSSLGLVMEV*FFSTLS Trigger: GCTGAGTGTTGAAAAGAACAAGACCTCCATCACCAG...ACCCAGGGAGGAAAGCAAACACACATTTAACAGACAGTATTCGAGAGGTGAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CAA 90 bp | TATTCACCTCTCGAATACTGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTGCACGCCCATCGACTTaGATGTTTAAGTCACTGGTA | + |
|
Preference number: 5 (lower is better) Translates to: YSPLEYCLLNVCLLSSLGARPST*MFKSLV Trigger: TACCAGTGACTTAAACATCAAAGTCGATGGGCGTGC...ACCCAGGGAGGAAAGCAAACACACATTTAACAGACAGTATTCGAGAGGTGAATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CAA 90 bp | CGCTTTACAGAGCAGCAGGATATGCTCAAACTTCAAAGTGCTCAATGGAGATGTGGGATATATCCAGCTTaGAAATTGCTGTTGTGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: RFTEQQDMLKLQSAQWRCGIYPA*KLLLCS Trigger: AGAGCACAACAGCAATTTCAAAGCTGGATATATCCC...ACATCTCCATTGAGCACTTTGAAGTTTGAGCATATCCTGCTGCTCTGTAAAGCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS-3UTR CAA 90 bp | TATTCACCTCTCGAATACTGTCTGTTAAATGTGTGTTTGCTTTCCTCCCTGGGTGTTGTGACCTGTTACTaGTACTTTGAAGAGTGTGCC | + |
|
Preference number: 5 (lower is better) Translates to: YSPLEYCLLNVCLLSSLGVVTCY*YFEECA Trigger: GGCACACTCTTCAAAGTACAAGTAACAGGTCACAAC...ACCCAGGGAGGAAAGCAAACACACATTTAACAGACAGTATTCGAGAGGTGAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CAA 90 bp | GACAGTGATTGGTCATGTTTTTCTAGCATTGGCATTTTAACTAGAGTAGCACACACAATTGGCTGGTTGTaGCCAGTGATGACCAGGTTT | + |
|
Preference number: 5 (lower is better) Translates to: DSDWSCFSSIGILTRVAHTIGWL*PVMTRF Trigger: AAACCTGGTCATCACTGGCAACAACCAGCCAATTGT...GTGTGCTACTCTAGTTAAAATGCCAATGCTAGAAAAACATGACCAATCACTGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS-3UTR CAA 90 bp | CGCTTTACAGAGCAGCAGGATATGCTCAAACTTCAAAGTGCTCAATGGAGATGTGCTTTGAAATTGCTGTaGTGCTCTTTGTTAACATTC | + |
|
Preference number: 5 (lower is better) Translates to: RFTEQQDMLKLQSAQWRCALKLL*CSLLTF Trigger: GAATGTTAACAAAGAGCACAACAGCAATTTCAAAGC...ACATCTCCATTGAGCACTTTGAAGTTTGAGCATATCCTGCTGCTCTGTAAAGCG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS GCA 72 bp | CGCATGGATTTCTTCACTGGCCCGTTGGACCCTTGCTaGTCGGTCGCTGCCGCCGCCGCCGCCGCTGCCGCC | + |
|
Preference number: 6 (lower is better) Translates to: RMDFFTGPLDPC*SVAAAAAAAAA Trigger: GGCGGCAGCGGCGGCGGCGGCGGCAGCGACCGAGCAGCAAGGGTCCAACGGGCCAGTGAAGAAATCCATGCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CAA 90 bp | CTCCGCTCCACAGCCTTCTCCCGCATGGATTTCTTCACTGGCCCGTaGGACCCTTGCTGCTCGGTCGCTGCCGCCGCCGCCGCCGCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: LRSTAFSRMDFFTGP*DPCCSVAAAAAAAA Trigger: GGCAGCGGCGGCGGCGGCGGCAGCGACCGAGCAGCAAGGGTCCAACGGGCCAGTGAAGAAATCCATGCGGGAGAAGGCTGTGGAGCGGAG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CCA 72 bp | CAGCCTTCTCCCGCATGGATTTCTTCACTGGCCCGTTaGACCCTTGCTGCTCGGTCGCTGCCGCCGCCGCCG | + |
|
Preference number: 6 (lower is better) Translates to: QPSPAWISSLAR*TLAARSLPPPP Trigger: CGGCGGCGGCGGCAGCGACCGAGCAGCAAGGGTCCAACGGGCCAGTGAAGAAATCCATGCGGGAGAAGGCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS TCA 72 bp | CATGCAGAGCTTGTAGCGCACCCAGTCACCACTCCCTaGCTGGTCCCCGCTGGAGGAACTGGGCAGGCGCGT | + |
|
Preference number: 6 (lower is better) Translates to: HAELVAHPVTTP*LVPAGGTGQAR Trigger: ACGCGCCTGCCCAGTTCCTCCAGCGGGGACCAGTCAGGGAGTGGTGACTGGGTGCGCTACAAGCTCTGCATG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CCA 72 bp | CCGCTCCACAGCCTTCTCCCGCATGGATTTCTTCACTaGCCCGTTGGACCCTTGCTGCTCGGTCGCTGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: PLHSLLPHGFLH*PVGPLLLGRCR Trigger: GCGGCAGCGACCGAGCAGCAAGGGTCCAACGGGCCAGTGAAGAAATCCATGCGGGAGAAGGCTGTGGAGCGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CAA 90 bp | ATGACGGCCAGGATAAACAGGAGGACGATCACGCAGATGGCTAAGTaGCCCTTTCGCCCCCTCAGCCCAGTCTTATGGAGCCGGTCCTCA | + |
|
Preference number: 6 (lower is better) Translates to: MTARINRRTITQMAK*PFRPLSPVLWSRSS Trigger: TGAGGACCGGCTCCATAAGACTGGGCTGAGGGGGCGAAAGGGCAACTTAGCCATCTGCGTGATCGTCCTCCTGTTTATCCTGGCCGTCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CCA 72 bp | GCTAAGTTGCCCTTTCGCCCCCTCAGCCCAGTCTTATaGAGCCGGTCCTCATCGATGGGGATATATCCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: AKLPFRPLSPVL*SRSSSMGIYPA Trigger: AGCTGGATATATCCCCATCGATGAGGACCGGCTCCATAAGACTGGGCTGAGGGGGCGAAAGGGCAACTTAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CAA 72 bp | AGGATAAACAGGAGGACGATCACGCAGATGGCTAAGTaGCCCTTTCGCCCCCTCAGCCCAGTCTTATGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: RINRRTITQMAK*PFRPLSPVLWS Trigger: GCTCCATAAGACTGGGCTGAGGGGGCGAAAGGGCAACTTAGCCATCTGCGTGATCGTCCTCCTGTTTATCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CAA 72 bp | CTGGGCAGGCGCGTAGGGCTGACCATCACCGTGCCGTaGAGGATGATGCTGTTTTCAGCTTTTAACTCCACA | + |
|
Preference number: 6 (lower is better) Translates to: LGRRVGLTITVP*RMMLFSAFNST Trigger: TGTGGAGTTAAAAGCTGAAAACAGCATCATCCTCAACGGCACGGTGATGGTCAGCCCTACGCGCCTGCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CAA 90 bp | CACCGTGCTCTTATAAAGCGGGTGGATGACGCCCATGTCAGACACTaGCTTGAACCTCAGCAGACCGCTCTCGTGGAACTCCATGCTATC | + |
|
Preference number: 6 (lower is better) Translates to: HRALIKRVDDAHVRH*LEPQQTALVELHAI Trigger: GATAGCATGGAGTTCCACGAGAGCGGTCTGCTGAGGTTCAAGCAAGTGTCTGACATGGGCGTCATCCACCCGCTTTATAAGAGCACGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CAA 72 bp | CTTATAAAGCGGGTGGATGACGCCCATGTCAGACACTaGCTTGAACCTCAGCAGACCGCTCTCGTGGAACTC | + |
|
Preference number: 6 (lower is better) Translates to: LIKRVDDAHVRH*LEPQQTALVEL Trigger: GAGTTCCACGAGAGCGGTCTGCTGAGGTTCAAGCAAGTGTCTGACATGGGCGTCATCCACCCGCTTTATAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CAA 90 bp | GGCCCAATGCGGATCACCGCCCAGATGACAAGTGTAATGAGTAGATaGATGACGGCCAGGATAAACAGGAGGACGATCACGCAGATGGCT | + |
|
Preference number: 6 (lower is better) Translates to: GPMRITAQMTSVMSR*MTARINRRTITQMA Trigger: AGCCATCTGCGTGATCGTCCTCCTGTTTATCCTGGCCGTCATCAATCTACTCATTACACTTGTCATCTGGGCGGTGATCCGCATTGGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CCA 72 bp | CTCAGCTTGGTCGTCCCTTGCTGGAAGACAATTGGCTaGTTGTTGCCAGTGATGACCAGGTTTTCATTCCGC | + |
|
Preference number: 6 (lower is better) Translates to: LSLVVPCWKTIG*LLPVMTRFSFR Trigger: GCGGAATGAAAACCTGGTCATCACTGGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CAA 72 bp | TTGGTCGTCCCTTGCTGGAAGACAATTGGCTGGTTGTaGCCAGTGATGACCAGGTTTTCATTCCGCCGTCCT | + |
|
Preference number: 6 (lower is better) Translates to: LVVPCWKTIGWL*PVMTRFSFRRP Trigger: AGGACGGCGGAATGAAAACCTGGTCATCACTGGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
||
| CDS CAA 72 bp | AGCTTGGTCGTCCCTTGCTGGAAGACAATTGGCTGGTaGTTGCCAGTGATGACCAGGTTTTCATTCCGCCGT | + |
|
Preference number: 6 (lower is better) Translates to: SLVVPCWKTIGW*LPVMTRFSFRR Trigger: ACGGCGGAATGAAAACCTGGTCATCACTGGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 90 bp | CCGATGTCGCTGGTGATGGAGGTCTTGTTCTTTTCAACACTCAGCTaGGTCGTCCCTTGCTGGAAGACAATTGGCTGGTTGTTGCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: PMSLVMEVLFFSTLS*VVPCWKTIGWLLPV Trigger: CACTGGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAAAGAACAAGACCTCCATCACCAGCGACATCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 90 bp | AGCCGGTCCTCATCGATGGGGATATATCCAGCTTTGAAATTGCTGTaGTGCTCTTTGTTAACATTCCTCCGCTCCACAGCCTTCTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: SRSSSMGIYPALKLL*CSLLTFLRSTAFSR Trigger: GCGGGAGAAGGCTGTGGAGCGGAGGAATGTTAACAAAGAGCACAACAGCAATTTCAAAGCTGGATATATCCCCATCGATGAGGACCGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS GCA 72 bp | GTGACCTGTTACTTGTACTTTGAAGAGTGTGCCATCTaGACACATGCAGAGCTTGTAGCGCACCCAGTCACC | + |
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Preference number: 6 (lower is better) Translates to: VTCYLYFEECAI*THAELVAHPVT Trigger: GGTGACTGGGTGCGCTACAAGCTCTGCATGTGTGCAGATGGCACACTCTTCAAAGTACAAGTAACAGGTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 72 bp | CGGATCACCGCCCAGATGACAAGTGTAATGAGTAGATaGATGACGGCCAGGATAAACAGGAGGACGATCACG | + |
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Preference number: 6 (lower is better) Translates to: RITAQMTSVMSR*MTARINRRTIT Trigger: CGTGATCGTCCTCCTGTTTATCCTGGCCGTCATCAATCTACTCATTACACTTGTCATCTGGGCGGTGATCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 90 bp | GGTGATGGAGGTCTTGTTCTTTTCAACACTCAGCTTGGTCGTCCCTaGCTGGAAGACAATTGGCTGGTTGTTGCCAGTGATGACCAGGTT | + |
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Preference number: 6 (lower is better) Translates to: GDGGLVLFNTQLGRP*LEDNWLVVASDDQV Trigger: AACCTGGTCATCACTGGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAAAGAACAAGACCTCCATCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS TCA 72 bp | CCACAAGGGTTGTCTGAGACCTGGCAGCCCATGTTGTaGCCTGTTACTTGTACTTTGAAGAGTGTGCCATCT | + |
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Preference number: 6 (lower is better) Translates to: PQGLSETWQPML*PVTCTLKSVPS Trigger: AGATGGCACACTCTTCAAAGTACAAGTAACAGGTCACAACATGGGCTGCCAGGTCTCAGACAACCCTTGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 72 bp | CTGGTGATGGAGGTCTTGTTCTTTTCAACACTCAGCTaGGTCGTCCCTTGCTGGAAGACAATTGGCTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: LVMEVLFFSTLS*VVPCWKTIGWL Trigger: CAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAAAGAACAAGACCTCCATCACCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 72 bp | AAAAACTGCATCCCGATGTCGCTGGTGATGGAGGTCTaGTTCTTTTCAACACTCAGCTTGGTCGTCCCTTGC | + |
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Preference number: 6 (lower is better) Translates to: KNCIPMSLVMEV*FFSTLSLVVPC Trigger: GCAAGGGACGACCAAGCTGAGTGTTGAAAAGAACAAGACCTCCATCACCAGCGACATCGGGATGCAGTTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS GCA 72 bp | GTCTTGTTCTTTTCAACACTCAGCTTGGTCGTCCCTTaGTGGAAGACAATTGGCTGGTTGTTGCCAGTGATG | + |
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Preference number: 6 (lower is better) Translates to: VLFFSTLSLVVP*WKTIGWLLPVM Trigger: CATCACTGGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAAAGAACAAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CCA 72 bp | TTGTTCTTTTCAACACTCAGCTTGGTCGTCCCTTGCTaGAAGACAATTGGCTGGTTGTTGCCAGTGATGACC | + |
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Preference number: 6 (lower is better) Translates to: LFFSTLSLVVPC*KTIGWLLPVMT Trigger: GGTCATCACTGGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAAAGAACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CCA 72 bp | CGATGCTTTCTGAACGTTCAAACTTTTCACCCCACTTaGCAGATGAAACTCGTGCGTCTCATAGTCCGTGCT | + |
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Preference number: 6 (lower is better) Translates to: RCFLNVQTFHPT*QMKLVRLIVRA Trigger: AGCACGGACTATGAGACGCACGAGTTTCATCTGCCAAGTGGGGTGAAAAGTTTGAACGTTCAGAAAGCATCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 72 bp | GGGATATATCCAGCTTTGAAATTGCTGTTGTGCTCTTaGTTAACATTCCTCCGCTCCACAGCCTTCTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: GIYPALKLLLCS*LTFLRSTAFSR Trigger: GCGGGAGAAGGCTGTGGAGCGGAGGAATGTTAACAAAGAGCACAACAGCAATTTCAAAGCTGGATATATCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 72 bp | GGTCTTGTTCTTTTCAACACTCAGCTTGGTCGTCCCTaGCTGGAAGACAATTGGCTGGTTGTTGCCAGTGAT | + |
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Preference number: 6 (lower is better) Translates to: GLVLFNTQLGRP*LEDNWLVVASD Trigger: ATCACTGGCAACAACCAGCCAATTGTCTTCCAGCAAGGGACGACCAAGCTGAGTGTTGAAAAGAACAAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 72 bp | TCGATGCTTTCTGAACGTTCAAACTTTTCACCCCACTaGGCAGATGAAACTCGTGCGTCTCATAGTCCGTGC | + |
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Preference number: 6 (lower is better) Translates to: SMLSERSNFSPH*ADETRASHSPC Trigger: GCACGGACTATGAGACGCACGAGTTTCATCTGCCAAGTGGGGTGAAAAGTTTGAACGTTCAGAAAGCATCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 72 bp | CCTTCGTTGCCTCGCACAATTGCACGCCCATCGACTTaGATGTTTAAGTCACTGGTAGCATTGCTGGTAATC | + |
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Preference number: 6 (lower is better) Translates to: PSLPRTIARPST*MFKSLVALLVI Trigger: GATTACCAGCAATGCTACCAGTGACTTAAACATCAAAGTCGATGGGCGTGCAATTGTGCGAGGCAACGAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 72 bp | AATTCAATGGTTTTGCCCATGATGAAGACGCCTTCGTaGCCTCGCACAATTGCACGCCCATCGACTTTGATG | + |
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Preference number: 6 (lower is better) Translates to: NSMVLPMMKTPS*PRTIARPSTLM Trigger: CATCAAAGTCGATGGGCGTGCAATTGTGCGAGGCAACGAAGGCGTCTTCATCATGGGCAAAACCATTGAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 90 bp | ATGAAGACGCCTTCGTTGCCTCGCACAATTGCACGCCCATCGACTTaGATGTTTAAGTCACTGGTAGCATTGCTGGTAATCCTTTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: MKTPSLPRTIARPST*MFKSLVALLVILSV Trigger: GACTGAAAGGATTACCAGCAATGCTACCAGTGACTTAAACATCAAAGTCGATGGGCGTGCAATTGTGCGAGGCAACGAAGGCGTCTTCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 90 bp | TCATCGATGGGGATATATCCAGCTTTGAAATTGCTGTTGTGCTCTTaGTTAACATTCCTCCGCTCCACAGCCTTCTCCCGCATGGATTTC | + |
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Preference number: 6 (lower is better) Translates to: SSMGIYPALKLLLCS*LTFLRSTAFSRMDF Trigger: GAAATCCATGCGGGAGAAGGCTGTGGAGCGGAGGAATGTTAACAAAGAGCACAACAGCAATTTCAAAGCTGGATATATCCCCATCGATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS GCA 72 bp | GTCACTGGTAGCATTGCTGGTAATCCTTTCAGTCGATaGTTTCTGAACGTTCAAACTTTTCACCCCACTTGG | + |
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Preference number: 6 (lower is better) Translates to: VTGSIAGNPFSR*FLNVQTFHPTW Trigger: CCAAGTGGGGTGAAAAGTTTGAACGTTCAGAAAGCATCGACTGAAAGGATTACCAGCAATGCTACCAGTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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| CDS CAA 72 bp | TCATCGATGGGGATATATCCAGCTTTGAAATTGCTGTaGTGCTCTTTGTTAACATTCCTCCGCTCCACAGCC | + |
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Preference number: 6 (lower is better) Translates to: SSMGIYPALKLL*CSLLTFLRSTA Trigger: GGCTGTGGAGCGGAGGAATGTTAACAAAGAGCACAACAGCAATTTCAAAGCTGGATATATCCCCATCGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081170.9 |
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