RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SFXN5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033720

Ensembl transcript IDs: ENSMUST00000045846.12, ENSMUST00000059034.13, ENSMUST00000113787.2, ENSMUST00000113788.2

Found 192 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCGAGGGGCCCACCAGGCCTAACCATTATACTCCCCTCCCATCAATaGAAACCAGTTCCCATGCTCCTCTGGCTCCCGCCACCTGTCCTG +
Preference number: 1 (lower is better)
Translates to: PRGPPGLTIILPSHQ*KPVPMLLWLPPPVL
Trigger: CAGGACAGGTGGCGGGAGCCAGAGGAGCATGGGAACTGGTTTGCATTGATGGGAGGGGAGTATAATGGTTAGGCCTGGTGGGCCCCTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 90 bp AGCAAGAGGCCCCAAGTCTGCAGCAGTGAGGAAGGGCATGCCGTGTaGCCCCTAAGCTCAGCTCAGGCATCCATACTGCCTCCTCCACAG +
Preference number: 1 (lower is better)
Translates to: SKRPQVCSSEEGHAV*PLSSAQASILPPPQ
Trigger: CTGTGGAGGAGGCAGTATGGATGCCTGAGCTGAGCTTAGGGGTCACACGGCATGCCCTTCCTCACTGCTGCAGACTTGGGGCCTCTTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 90 bp CACCCTCAGGCAGGAGACTCCTCTATTGCAGAAAGGTGTGGGTTGTaGCAGCTTCAGTGGCTGCAGACTGGACCACAGTGGGCTCAGCCC +
Preference number: 1 (lower is better)
Translates to: HPQAGDSSIAERCGL*QLQWLQTGPQWAQP
Trigger: GGGCTGAGCCCACTGTGGTCCAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATAGAGGAGTCTCCTGCCTGAGGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 90 bp CCCTCAGGATCCGGCCTTGCACCCTCAGGCAGGAGACTCCTCTATTaGAGAAAGGTGTGGGTTGTGACAGCTTCAGTGGCTGCAGACTGG +
Preference number: 1 (lower is better)
Translates to: PSGSGLAPSGRRLLY*RKVWVVTASVAADW
Trigger: CCAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATAGAGGAGTCTCCTGCCTGAGGGTGCAAGGCCGGATCCTGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 90 bp GGCCTTGCACCCTCAGGCAGGAGACTCCTCTATTGCAGAAAGGTGTaGGTTGTGACAGCTTCAGTGGCTGCAGACTGGACCACAGTGGGC +
Preference number: 1 (lower is better)
Translates to: GLAPSGRRLLYCRKV*VVTASVAADWTTVG
Trigger: GCCCACTGTGGTCCAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATAGAGGAGTCTCCTGCCTGAGGGTGCAAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 90 bp GCTTGTGGGGAACCCAAGTTCAGTCCTTCGCTTCCAGGCAGGGAATaGAAGCTCGGAGATGTGGGTGGCTTGTCCATTGCTGAGGCGACC +
Preference number: 1 (lower is better)
Translates to: ACGEPKFSPSLPGRE*KLGDVGGLSIAEAT
Trigger: GGTCGCCTCAGCAATGGACAAGCCACCCACATCTCCGAGCTTCCATTCCCTGCCTGGAAGCGAAGGACTGAACTTGGGTTCCCCACAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 90 bp CCATGCTCAGCCCATCTTGCTACAGCTACACCTGCCTTAAGATGCTaGCAGGGAACCTGTGACCTTGTCCTTGCTGCCTCGCGCCAGCCT +
Preference number: 1 (lower is better)
Translates to: PCSAHLATATPALRC*QGTCDLVLAASRQP
Trigger: AGGCTGGCGCGAGGCAGCAAGGACAAGGTCACAGGTTCCCTGCCAGCATCTTAAGGCAGGTGTAGCTGTAGCAAGATGGGCTGAGCATGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 90 bp TACCCATGCTCAGCCCATCTTGCTACAGCTACACCTGCCTTAAGATaGTGGCAGGGAACCTGTGACCTTGTCCTTGCTGCCTCGCGCCAG +
Preference number: 1 (lower is better)
Translates to: YPCSAHLATATPALR*WQGTCDLVLAASRQ
Trigger: CTGGCGCGAGGCAGCAAGGACAAGGTCACAGGTTCCCTGCCAGCATCTTAAGGCAGGTGTAGCTGTAGCAAGATGGGCTGAGCATGGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 90 bp AATCACTCCACACACAAAACACACCTACGAGGGGTACTGAGGCCATaGGGACAGCCAGCACAGAGGGCGAGCTGGAAGAACCTCTGGAGC +
Preference number: 1 (lower is better)
Translates to: NHSTHKTHLRGVLRP*GQPAQRASWKNLWS
Trigger: GCTCCAGAGGTTCTTCCAGCTCGCCCTCTGTGCTGGCTGTCCCCATGGCCTCAGTACCCCTCGTAGGTGTGTTTTGTGTGTGGAGTGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 90 bp TATTGCAGAAAGGTGTGGGTTGTGACAGCTTCAGTGGCTGCAGACTaGACCACAGTGGGCTCAGCCCACCTTTGTCCCCGTAGGAAACTC +
Preference number: 1 (lower is better)
Translates to: YCRKVWVVTASVAAD*TTVGSAHLCPRRKL
Trigger: GAGTTTCCTACGGGGACAAAGGTGGGCTGAGCCCACTGTGGTCCAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 90 bp GATTCCAGGGTCATGAGCCAGGGTTCCCATCCTAGGGTGGACAGATaGGGGCTGTGTAGAGATCAGTGTATCTCCTCTCTGTGGGTCCTT +
Preference number: 1 (lower is better)
Translates to: DSRVMSQGSHPRVDR*GLCRDQCISSLWVL
Trigger: AAGGACCCACAGAGAGGAGATACACTGATCTCTACACAGCCCTCATCTGTCCACCCTAGGATGGGAACCCTGGCTCATGACCCTGGAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 90 bp TCTCAGGGACCTGGAATCAATAAGAGCTCCATGAAAGATGACCCGTaGCTGGGGTCATCTGACTTTCCCTCAGCTGTGGGGTGGGTAGGA +
Preference number: 1 (lower is better)
Translates to: SQGPGINKSSMKDDP*LGSSDFPSAVGWVG
Trigger: TCCTACCCACCCCACAGCTGAGGGAAAGTCAGATGACCCCAGGCACGGGTCATCTTTCATGGAGCTCTTATTGATTCCAGGTCCCTGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 90 bp ATTATACTCCCCTCCCATCAATGCAAACCAGTTCCCATGCTCCTCTaGCTCCCGCCACCTGTCCTGCTACTTTTGGTCAGCTGCAACCAA +
Preference number: 1 (lower is better)
Translates to: IILPSHQCKPVPMLL*LPPPVLLLLVSCNQ
Trigger: TTGGTTGCAGCTGACCAAAAGTAGCAGGACAGGTGGCGGGAGCCAGAGGAGCATGGGAACTGGTTTGCATTGATGGGAGGGGAGTATAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 90 bp CAGAATGGCCTGATGCACTTTCCAGTCCAGAATCCACCTTTGAGATaGCTGGAATGTGCACATCTGAGTGAAGCAGGTAGAGAGGAGCCC +
Preference number: 1 (lower is better)
Translates to: QNGLMHFPVQNPPLR*LECAHLSEAGREEP
Trigger: GGGCTCCTCTCTACCTGCTTCACTCAGATGTGCACATTCCAGGCATCTCAAAGGTGGATTCTGGACTGGAAAGTGCATCAGGCCATTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 90 bp AGTTATCAGAGGAGAGTTGGCCAGGAACATCAGAGCTGGAGAGCCTaGTGTAGATTTGCCCTGACTGCTGGAAAAACCACACCCAACGAG +
Preference number: 1 (lower is better)
Translates to: SYQRRVGQEHQSWRA*CRFALTAGKTTPNE
Trigger: CTCGTTGGGTGTGGTTTTTCCAGCAGTCAGGGCAAATCTACAGCAGGCTCTCCAGCTCTGATGTTCCTGGCCAACTCTCCTCTGATAACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 90 bp TCTTTGATAGAGAAAGCCAATTCCCAAAAACCTTGGTTCATCCTGTaGGGTGCAGACCACCTCCCTTCCCTTCCCTTCTCTAACCCGAGG +
Preference number: 1 (lower is better)
Translates to: SLIEKANSQKPWFIL*GADHLPSLPFSNPR
Trigger: CCTCGGGTTAGAGAAGGGAAGGGAAGGGAGGTGGTCTGCACCCCACAGGATGAACCAAGGTTTTTGGGAATTGGCTTTCTCTATCAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 90 bp CTTCCCCAGACCAGAGACTTTCATAAGACAGCCACAATTAGGAAATaGGACAGAGTGCAGACATCTTGGTTCGGTGGCCATTTGGCATCT +
Preference number: 1 (lower is better)
Translates to: LPQTRDFHKTATIRK*DRVQTSWFGGHLAS
Trigger: AGATGCCAAATGGCCACCGAACCAAGATGTCTGCACTCTGTCTCATTTCCTAATTGTGGCTGTCTTATGAAAGTCTCTGGTCTGGGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 90 bp AGTGCAGACATCTTGGTTCGGTGGCCATTTGGCATCTTGGACTTTTaGTTCCTGTACTCCCAAATTGCTTTCCAGAGATGGAAGAGCATC +
Preference number: 1 (lower is better)
Translates to: SADILVRWPFGILDF*FLYSQIAFQRWKSI
Trigger: GATGCTCTTCCATCTCTGGAAAGCAATTTGGGAGTACAGGAACCAAAAGTCCAAGATGCCAAATGGCCACCGAACCAAGATGTCTGCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 90 bp ATGTTTAAAAGTTATCAGAGGAGAGTTGGCCAGGAACATCAGAGCTaGAGAGCCTGCTGTAGATTTGCCCTGACTGCTGGAAAAACCACA +
Preference number: 1 (lower is better)
Translates to: MFKSYQRRVGQEHQS*RACCRFALTAGKTT
Trigger: TGTGGTTTTTCCAGCAGTCAGGGCAAATCTACAGCAGGCTCTCCAGCTCTGATGTTCCTGGCCAACTCTCCTCTGATAACTTTTAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 90 bp TTAGGAAATGAGACAGAGTGCAGACATCTTGGTTCGGTGGCCATTTaGCATCTTGGACTTTTGGTTCCTGTACTCCCAAATTGCTTTCCA +
Preference number: 1 (lower is better)
Translates to: LGNETECRHLGSVAI*HLGLLVPVLPNCFP
Trigger: TGGAAAGCAATTTGGGAGTACAGGAACCAAAAGTCCAAGATGCCAAATGGCCACCGAACCAAGATGTCTGCACTCTGTCTCATTTCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 90 bp CTCCAGGCCTCTTTCTGTCCCCTAGCCTCAGCAAATAGGGACATTTaGATTCACAGAAAGCTTCCCTTATGGATTTTTATGAAGTCAAAA +
Preference number: 1 (lower is better)
Translates to: LQASFCPLASANRDI*IHRKLPLWIFMKSK
Trigger: TTTTGACTTCATAAAAATCCATAAGGGAAGCTTTCTGTGAATGCAAATGTCCCTATTTGCTGAGGCTAGGGGACAGAAAGAGGCCTGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp GATGGAGCCAGCAGCAAGAGGCCCCAAGTCTGCAGCAGTGAGGAAGGGCATGCCCAGACTGGACCACAGTaGGCTCAGCCCACCTTTGTC +
Preference number: 2 (lower is better)
Translates to: DGASSKRPQVCSSEEGHAQTGPQ*AQPTFV
Trigger: GACAAAGGTGGGCTGAGCCCACTGTGGTCCAGTCTG...GGCATGCCCTTCCTCACTGCTGCAGACTTGGGGCCTCTTGCTGCTGGCTCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR TCA 90 bp CTTCAGCCTGACCCCTCCTGTGTCAGATTCCAGGGTCATGAGCCAGGGTTCCCAGTGCCTGGGGTCATCTaGCTTTCCCTCAGCTGTGGG +
Preference number: 2 (lower is better)
Translates to: LQPDPSCVRFQGHEPGFPVPGVI*LSLSCG
Trigger: CCCACAGCTGAGGGAAAGTCAGATGACCCCAGGCAC...TGGGAACCCTGGCTCATGACCCTGGAATCTGACACAGGAGGGGTCAGGCTGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp ATACCTGCCCAAGGCTGGAAGCTTAGCATGGACCTGCCTCCCACTGGCCCCTCTCCCTCAGCTGTGGGGTaGGTAGGAGCTGGGTACATT +
Preference number: 2 (lower is better)
Translates to: IPAQGWKLSMDLPPTGPSPSAVG*VGAGYI
Trigger: AATGTACCCAGCTCCTACCCACCCCACAGCTGAGGG...AGAGGGGCCAGTGGGAGGCAGGTCCATGCTAAGCTTCCAGCCTTGGGCAGGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp GGTAGAGAGGAGCCCCAGGCTTGTGGGGAACCCAAGTTCAGTCCTTCGCTTCCACCTTGGTTCATCCTGTaGGGTGCAGACCACCTCCCT +
Preference number: 2 (lower is better)
Translates to: GREEPQACGEPKFSPSLPPWFIL*GADHLP
Trigger: AGGGAGGTGGTCTGCACCCCACAGGATGAACCAAGG...TGGAAGCGAAGGACTGAACTTGGGTTCCCCACAAGCCTGGGGCTCCTCTCTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 90 bp ACCCTCAGGATCCGGCCTTGCACCCTCAGGCAGGAGACTCCTCTATaGCAGAAAGGTGTGGGTTGTGACAGCTTCAGTGGCTGCAGACTG +
Preference number: 2 (lower is better)
Translates to: TLRIRPCTLRQETPL*QKGVGCDSFSGCRL
Trigger: CAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATAGAGGAGTCTCCTGCCTGAGGGTGCAAGGCCGGATCCTGAGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR TCA 90 bp GTGTCCAGCCAAGGCCTGGAGCCCAATACCCATGCTCAGCCCATCTTGCTACAGCTTCTTGGGGATCCCTaGCTAGAGCTGGGCTACTCT +
Preference number: 2 (lower is better)
Translates to: VSSQGLEPNTHAQPILLQLLGDP*LELGYS
Trigger: AGAGTAGCCCAGCTCTAGTCAGGGATCCCCAAGAAG...CTGTAGCAAGATGGGCTGAGCATGGGTATTGGGCTCCAGGCCTTGGCTGGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp GGTAGAGAGGAGCCCCAGGCTTGTGGGGAACCCAAGTTCAGTCCTTCGCTTCCAAAGATGACCCGTGCCTaGGGTCATCTGACTTTCCCT +
Preference number: 2 (lower is better)
Translates to: GREEPQACGEPKFSPSLPKMTRA*GHLTFP
Trigger: AGGGAAAGTCAGATGACCCCAGGCACGGGTCATCTT...TGGAAGCGAAGGACTGAACTTGGGTTCCCCACAAGCCTGGGGCTCCTCTCTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp CCTCCTGTGTCAGATTCCAGGGTCATGAGCCAGGGTTCCCATCCTAGGGTGGACTCTCTGTGGGTCCTTTaGACCAGGAGTCACCCTGTT +
Preference number: 2 (lower is better)
Translates to: PPVSDSRVMSQGSHPRVDSLWVL*TRSHPV
Trigger: AACAGGGTGACTCCTGGTCCAAAGGACCCACAGAGA...GTCCACCCTAGGATGGGAACCCTGGCTCATGACCCTGGAATCTGACACAGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR GCA 90 bp GTACATTCAGAGCCTGGTGTTCCCGGAATCTTCCAAGGGGTCTCTAGTGCTCTTCTGGATAGTGCTGTGTaGCCAGGCCGGCTGGTCTTC +
Preference number: 2 (lower is better)
Translates to: VHSEPGVPGIFQGVSSALLDSAV*PGRLVF
Trigger: GAAGACCAGCCGGCCTGGGCACACAGCACTATCCAG...AAGAGCACTAGAGACCCCTTGGAAGATTCCGGGAACACCAGGCTCTGAATGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp GTGTCCAGCCAAGGCCTGGAGCCCAATACCCATGCTCAGCCCATCTTGCTACAGCTGTCCTGCTACTTTTaGTCAGCTGCAACCAAGGCT +
Preference number: 2 (lower is better)
Translates to: VSSQGLEPNTHAQPILLQLSCYF*SAATKA
Trigger: AGCCTTGGTTGCAGCTGACCAAAAGTAGCAGGACAG...CTGTAGCAAGATGGGCTGAGCATGGGTATTGGGCTCCAGGCCTTGGCTGGACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp CCTCCTGTGTCAGATTCCAGGGTCATGAGCCAGGGTTCCCATCCTAGGGTGGACCTATCTCTTCCTCTGTaGCCTACACGTGACGAGATG +
Preference number: 2 (lower is better)
Translates to: PPVSDSRVMSQGSHPRVDLSLPL*PTRDEM
Trigger: CATCTCGTCACGTGTAGGCCACAGAGGAAGAGATAG...GTCCACCCTAGGATGGGAACCCTGGCTCATGACCCTGGAATCTGACACAGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp GTTGAGCCTCACTCATACCTGCCCAAGGCTGGAAGCTTAGCATGGACCTGCCTCGTTCCCATCCTAGGGTaGACAGATGAGGGCTGTGTA +
Preference number: 2 (lower is better)
Translates to: VEPHSYLPKAGSLAWTCLVPILG*TDEGCV
Trigger: TACACAGCCCTCATCTGTCCACCCTAGGATGGGAAC...GAGGCAGGTCCATGCTAAGCTTCCAGCCTTGGGCAGGTATGAGTGAGGCTCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR GCA 90 bp TCAGGGTGTATTGGAGCATGGCAGAAATCACTCCACACACAAAACACACCTACGCTGACGGAGGTTGGCTaGTTTCCAGGCAGCCCCTCC +
Preference number: 2 (lower is better)
Translates to: SGCIGAWQKSLHTQNTPTLTEVG*FPGSPS
Trigger: GGAGGGGCTGCCTGGAAAGCAGCCAACCTCCGTCAG...CGTAGGTGTGTTTTGTGTGTGGAGTGATTTCTGCCATGCTCCAATACACCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp CCTTTTTCTGCAACCATACATGTTGATCTTCAGCCTGACCCCTCCTGTGTCAGAGTTCCCATGCTCCTCTaGCTCCCGCCACCTGTCCTG +
Preference number: 2 (lower is better)
Translates to: PFSATIHVDLQPDPSCVRVPMLL*LPPPVL
Trigger: CAGGACAGGTGGCGGGAGCCAGAGGAGCATGGGAAC...TCTGACACAGGAGGGGTCAGGCTGAAGATCAACATGTATGGTTGCAGAAAAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 90 bp TTGTCCTTGCTGCCTCGCGCCAGCCTTTTTCTGCAACCATACATGTaGATCTTCAGCCTGACCCCTCCTGTGTCAGATTCCAGGGTCATG +
Preference number: 2 (lower is better)
Translates to: LSLLPRASLFLQPYM*IFSLTPPVSDSRVM
Trigger: CATGACCCTGGAATCTGACACAGGAGGGGTCAGGCTGAAGATCAACATGTATGGTTGCAGAAAAAGGCTGGCGCGAGGCAGCAAGGACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR GCA 90 bp GAAAAACCACACCCAACGAGAGGTAATTTGCCCCCTTTCCTCCAGGCCTCTTTCGGAAAAGAACCCTCCTaGAAAGCCCAGGCAGGATCC +
Preference number: 2 (lower is better)
Translates to: EKPHPTRGNLPPFLQASFGKEPS*KAQAGS
Trigger: GGATCCTGCCTGGGCTTTGCAGGAGGGTTCTTTTCC...GAAAGAGGCCTGGAGGAAAGGGGGCAAATTACCTCTCGTTGGGTGTGGTTTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR GCA 90 bp AGGTGCTTTTGTAGGCTAAGTGCTGGCCATTTCCAGAATGGCCTGATGCACTTTCTCAGGATCCGGCCTTaGACCCTCAGGCAGGAGACT +
Preference number: 2 (lower is better)
Translates to: RCFCRLSAGHFQNGLMHFLRIRP*TLRQET
Trigger: AGTCTCCTGCCTGAGGGTGCAAGGCCGGATCCTGAG...AAAGTGCATCAGGCCATTCTGGAAATGGCCAGCACTTAGCCTACAAAAGCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp GAAAAACCACACCCAACGAGAGGTAATTTGCCCCCTTTCCTCCAGGCCTCTTTCCTTCCAGGCAGGGAATaGAAGCTCGGAGATGTGGGT +
Preference number: 2 (lower is better)
Translates to: EKPHPTRGNLPPFLQASFLPGRE*KLGDVG
Trigger: ACCCACATCTCCGAGCTTCCATTCCCTGCCTGGAAG...GAAAGAGGCCTGGAGGAAAGGGGGCAAATTACCTCTCGTTGGGTGTGGTTTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp GTTGAGCCTCACTCATACCTGCCCAAGGCTGGAAGCTTAGCATGGACCTGCCTCGGGTGTATTGGAGCATaGCAGAAATCACTCCACACA +
Preference number: 2 (lower is better)
Translates to: VEPHSYLPKAGSLAWTCLGCIGA*QKSLHT
Trigger: TGTGTGGAGTGATTTCTGCCATGCTCCAATACACCC...GAGGCAGGTCCATGCTAAGCTTCCAGCCTTGGGCAGGTATGAGTGAGGCTCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 90 bp AATCCAAAGGAGTTGCCCCCTCAGCTCACCTGGGCTCAGGGTGTATaGGAGCATGGCAGAAATCACTCCACACACAAAACACACCTACGA +
Preference number: 2 (lower is better)
Translates to: NPKELPPQLTWAQGV*EHGRNHSTHKTHLR
Trigger: TCGTAGGTGTGTTTTGTGTGTGGAGTGATTTCTGCCATGCTCCAATACACCCTGAGCCCAGGTGAGCTGAGGGGGCAACTCCTTTGGATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR GCA 90 bp GAAAAACCACACCCAACGAGAGGTAATTTGCCCCCTTTCCTCCAGGCCTCTTTCCCCACAGAACAGTGTTaGTTCTTGGGGATCCCTGAC +
Preference number: 2 (lower is better)
Translates to: EKPHPTRGNLPPFLQASFPTEQC*FLGIPD
Trigger: GTCAGGGATCCCCAAGAAGCAACACTGTTCTGTGGG...GAAAGAGGCCTGGAGGAAAGGGGGCAAATTACCTCTCGTTGGGTGTGGTTTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp ACCCTCCTGCAAAGCCCAGGCAGGATCCTCTCTCCTTGTTCCCACAGAACAGTGAATTCCCAAAAACCTTaGTTCATCCTGTGGGGTGCA +
Preference number: 2 (lower is better)
Translates to: TLLQSPGRILSPCSHRTVNSQKP*FILWGA
Trigger: TGCACCCCACAGGATGAACCAAGGTTTTTGGGAATT...CACTGTTCTGTGGGAACAAGGAGAGAGGATCCTGCCTGGGCTTTGCAGGAGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR TCA 90 bp AGGTGCTTTTGTAGGCTAAGTGCTGGCCATTTCCAGAATGGCCTGATGCACTTTGAAAGGTGTGGGTTGTaGCAGCTTCAGTGGCTGCAG +
Preference number: 2 (lower is better)
Translates to: RCFCRLSAGHFQNGLMHFERCGL*QLQWLQ
Trigger: CTGCAGCCACTGAAGCTGTCACAACCCACACCTTTC...AAAGTGCATCAGGCCATTCTGGAAATGGCCAGCACTTAGCCTACAAAAGCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR GCA 90 bp CCTTTTTCTGCAACCATACATGTTGATCTTCAGCCTGACCCCTCCTGTGTCAGAAAGAGGCCCCAAGTCTaGAGCAGTGAGGAAGGGCAT +
Preference number: 2 (lower is better)
Translates to: PFSATIHVDLQPDPSCVRKRPQV*SSEEGH
Trigger: ATGCCCTTCCTCACTGCTGCAGACTTGGGGCCTCTT...TCTGACACAGGAGGGGTCAGGCTGAAGATCAACATGTATGGTTGCAGAAAAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR TCA 90 bp ACCCTCCTGCAAAGCCCAGGCAGGATCCTCTCTCCTTGTTCCCACAGAACAGTGCCCTATGTTAAAATGTaGATGGTTAGTCTCCCTACT +
Preference number: 2 (lower is better)
Translates to: TLLQSPGRILSPCSHRTVPYVKM*MVSLPT
Trigger: AGTAGGGAGACTAACCATTCACATTTTAACATAGGG...CACTGTTCTGTGGGAACAAGGAGAGAGGATCCTGCCTGGGCTTTGCAGGAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 90 bp GGAAGAGCATCCTTCAGGGAATGTTTAAAAGTTATCAGAGGAGAGTaGGCCAGGAACATCAGAGCTGGAGAGCCTGCTGTAGATTTGCCC +
Preference number: 2 (lower is better)
Translates to: GRASFRECLKVIRGE*ARNIRAGEPAVDLP
Trigger: GGGCAAATCTACAGCAGGCTCTCCAGCTCTGATGTTCCTGGCCAACTCTCCTCTGATAACTTTTAAACATTCCCTGAAGGATGCTCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR TCA 90 bp CCTCTATTGCAGAAAGGTGTGGGTTGTGACAGCTTCAGTGGCTGCAGACTGGACGCCCAGAGATGCACTTaGTTCTTTTTGTGTAGGAAA +
Preference number: 2 (lower is better)
Translates to: PLLQKGVGCDSFSGCRLDAQRCT*FFLCRK
Trigger: TTTCCTACACAAAAAGAATCAAGTGCATCTCTGGGC...GTCCAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATAGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp AGGTGCTTTTGTAGGCTAAGTGCTGGCCATTTCCAGAATGGCCTGATGCACTTTAACAGTGTTGCTTCTTaGGGATCCCTGACTAGAGCT +
Preference number: 2 (lower is better)
Translates to: RCFCRLSAGHFQNGLMHFNSVAS*GSLTRA
Trigger: AGCTCTAGTCAGGGATCCCCAAGAAGCAACACTGTT...AAAGTGCATCAGGCCATTCTGGAAATGGCCAGCACTTAGCCTACAAAAGCACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR GCA 90 bp TGGAAGAGCATCCTTCAGGGAATGTTTAAAAGTTATCAGAGGAGAGTTGGCCAGAGGAGACTCCTCTATTaGAGAAAGGTGTGGGTTGTG +
Preference number: 2 (lower is better)
Translates to: WKSILQGMFKSYQRRVGQRRLLY*RKVWVV
Trigger: CACAACCCACACCTTTCTGCAATAGAGGAGTCTCCT...CTGGCCAACTCTCCTCTGATAACTTTTAAACATTCCCTGAAGGATGCTCTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CCA 90 bp TGGAAGAGCATCCTTCAGGGAATGTTTAAAAGTTATCAGAGGAGAGTTGGCCAGAACTCTAGCTACTTGTaGAAAAGAACCCTCCTGCAA +
Preference number: 2 (lower is better)
Translates to: WKSILQGMFKSYQRRVGQNSSYL*KRTLLQ
Trigger: TTGCAGGAGGGTTCTTTTCCACAAGTAGCTAGAGTT...CTGGCCAACTCTCCTCTGATAACTTTTAAACATTCCCTGAAGGATGCTCTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp CTGAGGCCATGGGGACAGCCAGCACAGAGGGCGAGCTaGAAGAACCTCTGGAGCAGGCAGGCCTGGGGGAGG +
Preference number: 3 (lower is better)
Translates to: LRPWGQPAQRAS*KNLWSRQAWGR
Trigger: CCTCCCCCAGGCCTGCCTGCTCCAGAGGTTCTTCCAGCTCGCCCTCTGTGCTGGCTGTCCCCATGGCCTCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 72 bp TCATACCTGCCCAAGGCTGGAAGCTTAGCATGGACCTaGCTCCCACTGGCCCCTCTCCTCAGTGCCCCACCC +
Preference number: 3 (lower is better)
Translates to: SYLPKAGSLAWT*LPLAPLLSAPP
Trigger: GGGTGGGGCACTGAGGAGAGGGGCCAGTGGGAGGCAGGTCCATGCTAAGCTTCCAGCCTTGGGCAGGTATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp TCAAGAGACTTCTCTCCCCACCCCGAACGCCCGGCCTaGATAGTGCTGTGTGCCCAGGCCGGCTGGTCTTCA +
Preference number: 3 (lower is better)
Translates to: SRDFSPHPERPA*IVLCAQAGWSS
Trigger: TGAAGACCAGCCGGCCTGGGCACACAGCACTATCCAGGCCGGGCGTTCGGGGTGGGGAGAGAAGTCTCTTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp AAGGTGTGGGTTGTGACAGCTTCAGTGGCTGCAGACTaGACCACAGTGGGCTCAGCCCACCTTTGTCCCCGT +
Preference number: 3 (lower is better)
Translates to: KVWVVTASVAAD*TTVGSAHLCPR
Trigger: ACGGGGACAAAGGTGGGCTGAGCCCACTGTGGTCCAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp CTTCGCTTCCAGGCAGGGAATGGAAGCTCGGAGATGTaGGTGGCTTGTCCATTGCTGAGGCGACCTCTCAGG +
Preference number: 3 (lower is better)
Translates to: LRFQAGNGSSEM*VACPLLRRPLR
Trigger: CCTGAGAGGTCGCCTCAGCAATGGACAAGCCACCCACATCTCCGAGCTTCCATTCCCTGCCTGGAAGCGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CAA 90 bp CTTCAGCCTGACCCCTCCTGTGTCAGATTCCAGGGTCATGAGCCAGGGTTCCCACTCTCTGTGGGTCCTTaGGACCAGGAGTCACCCTGT +
Preference number: 3 (lower is better)
Translates to: LQPDPSCVRFQGHEPGFPLSVGP*DQESPC
Trigger: ACAGGGTGACTCCTGGTCCAAAGGACCCACAGAGAG...TGGGAACCCTGGCTCATGACCCTGGAATCTGACACAGGAGGGGTCAGGCTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CAA 90 bp GATGGAGCCAGCAGCAAGAGGCCCCAAGTCTGCAGCAGTGAGGAAGGGCATGCCCAGGATCCTCTCTCCTaGTTCCCACAGAACAGTGTT +
Preference number: 3 (lower is better)
Translates to: DGASSKRPQVCSSEEGHAQDPLS*FPQNSV
Trigger: AACACTGTTCTGTGGGAACAAGGAGAGAGGATCCTG...GGCATGCCCTTCCTCACTGCTGCAGACTTGGGGCCTCTTGCTGCTGGCTCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 72 bp ATGGAAGCTCGGAGATGTGGGTGGCTTGTCCATTGCTaGGGCGACCTCTCAGGCAGTTGCACCCTCAGGATC +
Preference number: 3 (lower is better)
Translates to: MEARRCGWLVHC*GDLSGSCTLRI
Trigger: GATCCTGAGGGTGCAACTGCCTGAGAGGTCGCCTCAGCAATGGACAAGCCACCCACATCTCCGAGCTTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp CCCTCCCATCAATGCAAACCAGTTCCCATGCTCCTCTaGCTCCCGCCACCTGTCCTGCTACTTTTGGTCAGC +
Preference number: 3 (lower is better)
Translates to: PSHQCKPVPMLL*LPPPVLLLLVS
Trigger: GCTGACCAAAAGTAGCAGGACAGGTGGCGGGAGCCAGAGGAGCATGGGAACTGGTTTGCATTGATGGGAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp AGCTATCTCTTCCTCTGTGGCCTACACGTGACGAGATaGAGCCAGCAGCAAGAGGCCCCAAGTCTGCAGCAG +
Preference number: 3 (lower is better)
Translates to: SYLFLCGLHVTR*SQQQEAPSLQQ
Trigger: CTGCTGCAGACTTGGGGCCTCTTGCTGCTGGCTCCATCTCGTCACGTGTAGGCCACAGAGGAAGAGATAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp ACACACAAAACACACCTACGAGGGGTACTGAGGCCATaGGGACAGCCAGCACAGAGGGCGAGCTGGAAGAAC +
Preference number: 3 (lower is better)
Translates to: THKTHLRGVLRP*GQPAQRASWKN
Trigger: GTTCTTCCAGCTCGCCCTCTGTGCTGGCTGTCCCCATGGCCTCAGTACCCCTCGTAGGTGTGTTTTGTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 72 bp AGCTACACCTGCCTTAAGATGCTGGCAGGGAACCTGTaGCCTTGTCCTTGCTGCCTCGCGCCAGCCTTTTTC +
Preference number: 3 (lower is better)
Translates to: SYTCLKMLAGNL*PCPCCLAPAFF
Trigger: GAAAAAGGCTGGCGCGAGGCAGCAAGGACAAGGTCACAGGTTCCCTGCCAGCATCTTAAGGCAGGTGTAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 72 bp TGTGAATGGTTAGTCTCCCTACTGACGGAGGTTGGCTaGTTTCCAGGCAGCCCCTCCTTGCAGAGACAGCTC +
Preference number: 3 (lower is better)
Translates to: CEWLVSLLTEVG*FPGSPSLQRQL
Trigger: GAGCTGTCTCTGCAAGGAGGGGCTGCCTGGAAAGCAGCCAACCTCCGTCAGTAGGGAGACTAACCATTCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp CCCTCAGGCAGGAGACTCCTCTATTGCAGAAAGGTGTaGGTTGTGACAGCTTCAGTGGCTGCAGACTGGACC +
Preference number: 3 (lower is better)
Translates to: PSGRRLLYCRKV*VVTASVAADWT
Trigger: GGTCCAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATAGAGGAGTCTCCTGCCTGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp GCCCATCTTGCTACAGCTACACCTGCCTTAAGATGCTaGCAGGGAACCTGTGACCTTGTCCTTGCTGCCTCG +
Preference number: 3 (lower is better)
Translates to: AHLATATPALRC*QGTCDLVLAAS
Trigger: CGAGGCAGCAAGGACAAGGTCACAGGTTCCCTGCCAGCATCTTAAGGCAGGTGTAGCTGTAGCAAGATGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CAA 90 bp AGAGGAGCCCCAGGCTTGTGGGGAACCCAAGTTCAGTCCTTCGCTTCCAGGCAGGGAAACTCTAGCTACTaGTGGAAAAGAACCCTCCTG +
Preference number: 3 (lower is better)
Translates to: RGAPGLWGTQVQSFASRQGNSSY*WKRTLL
Trigger: CAGGAGGGTTCTTTTCCACAAGTAGCTAGAGTTTCC...CTGCCTGGAAGCGAAGGACTGAACTTGGGTTCCCCACAAGCCTGGGGCTCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 72 bp GCAGGAGACTCCTCTATTGCAGAAAGGTGTGGGTTGTaGCAGCTTCAGTGGCTGCAGACTGGACCACAGTGG +
Preference number: 3 (lower is better)
Translates to: AGDSSIAERCGL*QLQWLQTGPQW
Trigger: CCACTGTGGTCCAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATAGAGGAGTCTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 72 bp TTAGGTAGAGCTATCTCTTCCTCTGTGGCCTACACGTaGCGAGATGGAGCCAGCAGCAAGAGGCCCCAAGTC +
Preference number: 3 (lower is better)
Translates to: LGRAISSSVAYT*RDGASSKRPQV
Trigger: GACTTGGGGCCTCTTGCTGCTGGCTCCATCTCGTCACGTGTAGGCCACAGAGGAAGAGATAGCTCTACCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 72 bp TCTAGTGTCCAGCCAAGGCCTGGAGCCCAATACCCATaGTCAGCCCATCTTGCTACAGCTACACCTGCCTTA +
Preference number: 3 (lower is better)
Translates to: SSVQPRPGAQYP*SAHLATATPAL
Trigger: TAAGGCAGGTGTAGCTGTAGCAAGATGGGCTGAGCATGGGTATTGGGCTCCAGGCCTTGGCTGGACACTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 72 bp CACAAGGACCATCTGTCACAGCAAATCCAAAGGAGTTaGCCCCTCAGCTCACCTGGGCTCAGGGTGTATTGG +
Preference number: 3 (lower is better)
Translates to: HKDHLSQQIQRS*PLSSPGLRVYW
Trigger: CCAATACACCCTGAGCCCAGGTGAGCTGAGGGGGCAACTCCTTTGGATTTGCTGTGACAGATGGTCCTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp CCTCTCTCCTTGTTCCCACAGAACAGTGTTGCTTCTTaGGGATCCCTGACTAGAGCTGGGCTACTCTCAGGG +
Preference number: 3 (lower is better)
Translates to: PLSLFPQNSVAS*GSLTRAGLLSG
Trigger: CCCTGAGAGTAGCCCAGCTCTAGTCAGGGATCCCCAAGAAGCAACACTGTTCTGTGGGAACAAGGAGAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 72 bp TGTTCCCACAGAACAGTGTTGCTTCTTGGGGATCCCTaGCTAGAGCTGGGCTACTCTCAGGGACCTGGAATC +
Preference number: 3 (lower is better)
Translates to: CSHRTVLLLGDP*LELGYSQGPGI
Trigger: GATTCCAGGTCCCTGAGAGTAGCCCAGCTCTAGTCAGGGATCCCCAAGAAGCAACACTGTTCTGTGGGAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp TGTAGAGATCAGTGTATCTCCTCTCTGTGGGTCCTTTaGACCAGGAGTCACCCTGTTCAGCTCACCCAGACC +
Preference number: 3 (lower is better)
Translates to: CRDQCISSLWVL*TRSHPVQLTQT
Trigger: GGTCTGGGTGAGCTGAACAGGGTGACTCCTGGTCCAAAGGACCCACAGAGAGGAGATACACTGATCTCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp CCCTCAGCTCACCTGGGCTCAGGGTGTATTGGAGCATaGCAGAAATCACTCCACACACAAAACACACCTACG +
Preference number: 3 (lower is better)
Translates to: PSAHLGSGCIGA*QKSLHTQNTPT
Trigger: CGTAGGTGTGTTTTGTGTGTGGAGTGATTTCTGCCATGCTCCAATACACCCTGAGCCCAGGTGAGCTGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 72 bp AGTCTGAAGTCCCTAGGTATGCTGAGGCATACGTGTTaGGCCTCACTCATACCTGCCCAAGGCTGGAAGCTT +
Preference number: 3 (lower is better)
Translates to: SLKSLGMLRHTC*ASLIPAQGWKL
Trigger: AAGCTTCCAGCCTTGGGCAGGTATGAGTGAGGCTCAACACGTATGCCTCAGCATACCTAGGGACTTCAGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp GAGAAAGCCAATTCCCAAAAACCTTGGTTCATCCTGTaGGGTGCAGACCACCTCCCTTCCCTTCCCTTCTCT +
Preference number: 3 (lower is better)
Translates to: EKANSQKPWFIL*GADHLPSLPFS
Trigger: AGAGAAGGGAAGGGAAGGGAGGTGGTCTGCACCCCACAGGATGAACCAAGGTTTTTGGGAATTGGCTTTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp AGTTATCAGAGGAGAGTTGGCCAGGAACATCAGAGCTaGAGAGCCTGCTGTAGATTTGCCCTGACTGCTGGA +
Preference number: 3 (lower is better)
Translates to: SYQRRVGQEHQS*RACCRFALTAG
Trigger: TCCAGCAGTCAGGGCAAATCTACAGCAGGCTCTCCAGCTCTGATGTTCCTGGCCAACTCTCCTCTGATAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CAA 90 bp TTGATCTTCAGCCTGACCCCTCCTGTGTCAGATTCCAGGGTCATGAGCCAGGGTACAGCCAGGAAGGGTTaGGCACAAGTCAAGGTTTTT +
Preference number: 3 (lower is better)
Translates to: LIFSLTPPVSDSRVMSQGTARKG*AQVKVF
Trigger: AAAAACCTTGACTTGTGCCAAACCCTTCCTGGCTGT...ACCCTGGCTCATGACCCTGGAATCTGACACAGGAGGGGTCAGGCTGAAGATCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 72 bp AACATCAGAGCTGGAGAGCCTGCTGTAGATTTGCCCTaGCTGCTGGAAAAACCACACCCAACGAGAGGTAAT +
Preference number: 3 (lower is better)
Translates to: NIRAGEPAVDLP*LLEKPHPTRGN
Trigger: ATTACCTCTCGTTGGGTGTGGTTTTTCCAGCAGTCAGGGCAAATCTACAGCAGGCTCTCCAGCTCTGATGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR-3UTR CAA 90 bp GTAAGGCCCAGAGATGCACTTGATTCTTTTTGTGTAGGAAATGTGTCAGAATTCCCAGGCAGCCCCTCCTaGCAGAGACAGCTCAAGAGA +
Preference number: 3 (lower is better)
Translates to: VRPRDALDSFCVGNVSEFPGSPS*QRQLKR
Trigger: TCTCTTGAGCTGTCTCTGCAAGGAGGGGCTGCCTGG...GAATTCTGACACATTTCCTACACAAAAAGAATCAAGTGCATCTCTGGGCCTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 72 bp CTGATGCACTTTCCAGTCCAGAATCCACCTTTGAGATaGCTGGAATGTGCACATCTGAGTGAAGCAGGTAGA +
Preference number: 3 (lower is better)
Translates to: LMHFPVQNPPLR*LECAHLSEAGR
Trigger: TCTACCTGCTTCACTCAGATGTGCACATTCCAGGCATCTCAAAGGTGGATTCTGGACTGGAAAGTGCATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp GTGCAGACATCTTGGTTCGGTGGCCATTTGGCATCTTaGACTTTTGGTTCCTGTACTCCCAAATTGCTTTCC +
Preference number: 3 (lower is better)
Translates to: VQTSWFGGHLAS*TFGSCTPKLLS
Trigger: GGAAAGCAATTTGGGAGTACAGGAACCAAAAGTCCAAGATGCCAAATGGCCACCGAACCAAGATGTCTGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp GAGACAGAGTGCAGACATCTTGGTTCGGTGGCCATTTaGCATCTTGGACTTTTGGTTCCTGTACTCCCAAAT +
Preference number: 3 (lower is better)
Translates to: ETECRHLGSVAI*HLGLLVPVLPN
Trigger: ATTTGGGAGTACAGGAACCAAAAGTCCAAGATGCCAAATGGCCACCGAACCAAGATGTCTGCACTCTGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CCA 72 bp ATCTTGGTTCGGTGGCCATTTGGCATCTTGGACTTTTaGTTCCTGTACTCCCAAATTGCTTTCCAGAGATGG +
Preference number: 3 (lower is better)
Translates to: ILVRWPFGILDF*FLYSQIAFQRW
Trigger: CCATCTCTGGAAAGCAATTTGGGAGTACAGGAACCAAAAGTCCAAGATGCCAAATGGCCACCGAACCAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 72 bp ACCAGAGACTTTCATAAGACAGCCACAATTAGGAAATaGGACAGAGTGCAGACATCTTGGTTCGGTGGCCAT +
Preference number: 3 (lower is better)
Translates to: TRDFHKTATIRK*DRVQTSWFGGH
Trigger: ATGGCCACCGAACCAAGATGTCTGCACTCTGTCTCATTTCCTAATTGTGGCTGTCTTATGAAAGTCTCTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 72 bp GGGGGTGGACCAGAAGGAAGATATTCTTTACAGAAGTaGAGGATAAGAGAATCCCATTACCTACAGAGCCAG +
Preference number: 3 (lower is better)
Translates to: GGGPEGRYSLQK*RIRESHYLQSQ
Trigger: CTGGCTCTGTAGGTAATGGGATTCTCTTATCCTTCACTTCTGTAAAGAATATCTTCCTTCTGGTCCACCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
3UTR GCA 72 bp TGGCATCTTGGACTTTTGGTTCCTGTACTCCCAAATTaGTTTCCAGAGATGGAAGAGCATCCTTCAGGGAAT +
Preference number: 3 (lower is better)
Translates to: WHLGLLVPVLPN*FPEMEEHPSGN
Trigger: ATTCCCTGAAGGATGCTCTTCCATCTCTGGAAAGCAATTTGGGAGTACAGGAACCAAAAGTCCAAGATGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR GCA 72 bp GGGTGGAAAGGGTTTATTCGGCTTACACTTCCATACTaGTATTTCATCACCAAAGGAAGTCTGGACTGGAAC +
Preference number: 3 (lower is better)
Translates to: GWKGFIRLTLPY*YFITKGSLDWN
Trigger: GTTCCAGTCCAGACTTCCTTTGGTGATGAAATAGCAGTATGGAAGTGTAAGCCGAATAAACCCTTTCCACCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
3UTR GCA 72 bp TCTTTCTGTCCCCTAGCCTCAGCAAATAGGGACATTTaGATTCACAGAAAGCTTCCCTTATGGATTTTTATG +
Preference number: 3 (lower is better)
Translates to: SFCPLASANRDI*IHRKLPLWIFM
Trigger: CATAAAAATCCATAAGGGAAGCTTTCTGTGAATGCAAATGTCCCTATTTGCTGAGGCTAGGGGACAGAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR TCA 72 bp TTTAAATTCATGTTTATTGCCCACAGCCCGTTAGTATaGCATAAATCACATACATTGAGACATTTTCTGAGG +
Preference number: 3 (lower is better)
Translates to: FKFMFIAHSPLV*HKSHTLRHFLR
Trigger: CCTCAGAAAATGTCTCAATGTATGTGATTTATGTCATACTAACGGGCTGTGGGCAATAAACATGAATTTAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR GCA 90 bp CGAGATGGAGCCAGCAGCAAGAGGCCCCAAGTCTGCAGCAGTGAGGAAGGGCATGCTGGAAGCGGGGCTTaGCCAGCTGGAAAGGGGGCG +
Preference number: 4 (lower is better)
Translates to: RDGASSKRPQVCSSEEGHAGSGA*PAGKGA
Trigger: CGCCCCCTTTCCAGCTGGGCAAGCCCCGCTTCCAGC...ATGCCCTTCCTCACTGCTGCAGACTTGGGGCCTCTTGCTGCTGGCTCCATCTCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR GCA 90 bp CCTTGCAGAGACAGCTCAAGAGACTTCTCTCCCCACCCCGAACGCCCGGCCTGGAGCCGCGGGCGTGCTTaGAAGAGAGCTGTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PCRDSSRDFSPHPERPAWSRGRA*KRAVFS
Trigger: GGAGAAGACAGCTCTCTTGCAAGCACGCCCGCGGCT...CCAGGCCGGGCGTTCGGGGTGGGGAGAGAAGTCTCTTGAGCTGTCTCTGCAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CCA 90 bp CGAGATGGAGCCAGCAGCAAGAGGCCCCAAGTCTGCAGCAGTGAGGAAGGGCATCGGGGCTTGCCCAGCTaGAAAGGGGGCGCATCTGTG +
Preference number: 4 (lower is better)
Translates to: RDGASSKRPQVCSSEEGHRGLPS*KGGASV
Trigger: CACAGATGCGCCCCCTTTCCAGCTGGGCAAGCCCCG...ATGCCCTTCCTCACTGCTGCAGACTTGGGGCCTCTTGCTGCTGGCTCCATCTCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR TCA 90 bp CTTCAGCCTGACCCCTCCTGTGTCAGATTCCAGGGTCATGAGCCAGGGTTCCCATCTGCGGGAAAAGGCTaGTGGCCAGCGGCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: LQPDPSCVRFQGHEPGFPSAGKG*WPAAGP
Trigger: TGGCCCTGCCGCTGGCCATCAGCCTTTTCCCGCAGA...TGGGAACCCTGGCTCATGACCCTGGAATCTGACACAGGAGGGGTCAGGCTGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR GCA 90 bp GATGGAGCCAGCAGCAAGAGGCCCCAAGTCTGCAGCAGTGAGGAAGGGCATGCCCTCCTGGGCGCAGGGTaGCATGCTTGTAATCCTCCA +
Preference number: 4 (lower is better)
Translates to: DGASSKRPQVCSSEEGHALLGAG*HACNPP
Trigger: TGGAGGATTACAAGCATGGCACCCTGCGCCCAGGAG...GGCATGCCCTTCCTCACTGCTGCAGACTTGGGGCCTCTTGCTGCTGGCTCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR GCA 90 bp TCTGACTTTCCCTCAGCTGTGGGGTGGGTAGGAGCTGGGTACATTCAGAGCCTGGGCCAGGCCGAAGGCTaGCAGGCACACGAGGCTATG +
Preference number: 4 (lower is better)
Translates to: SDFPSAVGWVGAGYIQSLGQAEG*QAHEAM
Trigger: CATAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCC...CAGGCTCTGAATGTACCCAGCTCCTACCCACCCCACAGCTGAGGGAAAGTCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 72 bp CGACCTCTCAGGCAGTTGCACCCTCAGGATCCGGCCTaGCACCCTCAGGCAGGAGACTCCTCTATTGCAGAA +
Preference number: 4 (lower is better)
Translates to: RPLRQLHPQDPA*HPQAGDSSIAE
Trigger: TTCTGCAATAGAGGAGTCTCCTGCCTGAGGGTGCAAGGCCGGATCCTGAGGGTGCAACTGCCTGAGAGGTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 72 bp GGGAATGGAAGCTCGGAGATGTGGGTGGCTTGTCCATaGCTGAGGCGACCTCTCAGGCAGTTGCACCCTCAG +
Preference number: 4 (lower is better)
Translates to: GNGSSEMWVACP*LRRPLRQLHPQ
Trigger: CTGAGGGTGCAACTGCCTGAGAGGTCGCCTCAGCAATGGACAAGCCACCCACATCTCCGAGCTTCCATTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR TCA 90 bp GAAAAACCACACCCAACGAGAGGTAATTTGCCCCCTTTCCTCCAGGCCTCTTTCCGCCGCGGACGCCGCTaGGGCTGTGGTTGCTGTATC +
Preference number: 4 (lower is better)
Translates to: EKPHPTRGNLPPFLQASFRRGRR*GCGCCI
Trigger: GATACAGCAACCACAGCCTCAGCGGCGTCCGCGGCG...GAAAGAGGCCTGGAGGAAAGGGGGCAAATTACCTCTCGTTGGGTGTGGTTTTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR GCA 90 bp AGAGGAGCCCCAGGCTTGTGGGGAACCCAAGTTCAGTCCTTCGCTTCCAGGCAGAGGAGCCCACGAGGTTaGCATCAGCATCCAGGACAT +
Preference number: 4 (lower is better)
Translates to: RGAPGLWGTQVQSFASRQRSPRG*HQHPGH
Trigger: ATGTCCTGGATGCTGATGGCAACCTCGTGGGCTCCT...CTGCCTGGAAGCGAAGGACTGAACTTGGGTTCCCCACAAGCCTGGGGCTCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CCA 90 bp ATACCTGCCCAAGGCTGGAAGCTTAGCATGGACCTGCCTCCCACTGGCCCCTCTTGCAGATATTGGCACTaGCTACTGCAGGGAAGGGTA +
Preference number: 4 (lower is better)
Translates to: IPAQGWKLSMDLPPTGPSCRYWH*LLQGRV
Trigger: TACCCTTCCCTGCAGTAGCCAGTGCCAATATCTGCA...AGAGGGGCCAGTGGGAGGCAGGTCCATGCTAAGCTTCCAGCCTTGGGCAGGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 72 bp ATCCGGCCTTGCACCCTCAGGCAGGAGACTCCTCTATaGCAGAAAGGTGTGGGTTGTGACAGCTTCAGTGGC +
Preference number: 4 (lower is better)
Translates to: IRPCTLRQETPL*QKGVGCDSFSG
Trigger: GCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATAGAGGAGTCTCCTGCCTGAGGGTGCAAGGCCGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR TCA 90 bp AGAGGAGCCCCAGGCTTGTGGGGAACCCAAGTTCAGTCCTTCGCTTCCAGGCAGTGCGGTTTGCATAGTTaGCACAGGCATTATGGCTCT +
Preference number: 4 (lower is better)
Translates to: RGAPGLWGTQVQSFASRQCGLHS*HRHYGS
Trigger: AGAGCCATAATGCCTGTGTCAACTATGCAAACCGCA...CTGCCTGGAAGCGAAGGACTGAACTTGGGTTCCCCACAAGCCTGGGGCTCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CCA 90 bp GGCTTACACTTCCATACTGCTATTTCATCACCAAAGGAAGTCTGGACTGGAACTCCAAGCGGGTGTGGATaGGGGCCAGCGCTGCGCAGC +
Preference number: 4 (lower is better)
Translates to: GLHFHTAISSPKEVWTGTPSGCG*GPALRS
Trigger: GCTGCGCAGCGCTGGCCCCCATCCACACCCGCTTGG...AGTTCCAGTCCAGACTTCCTTTGGTGATGAAATAGCAGTATGGAAGTGTAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
3UTR CAA 72 bp AACCCTCCTGCAAAGCCCAGGCAGGATCCTCTCTCCTaGTTCCCACAGAACAGTGTTGCTTCTTGGGGATCC +
Preference number: 4 (lower is better)
Translates to: NPPAKPRQDPLS*FPQNSVASWGS
Trigger: GGATCCCCAAGAAGCAACACTGTTCTGTGGGAACAAGGAGAGAGGATCCTGCCTGGGCTTTGCAGGAGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 72 bp CCACAAGGACCATCTGTCACAGCAAATCCAAAGGAGTaGCCCCCTCAGCTCACCTGGGCTCAGGGTGTATTG +
Preference number: 4 (lower is better)
Translates to: PQGPSVTANPKE*PPQLTWAQGVL
Trigger: CAATACACCCTGAGCCCAGGTGAGCTGAGGGGGCAACTCCTTTGGATTTGCTGTGACAGATGGTCCTTGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR TCA 90 bp CGCTCAGCCACCATCACTGTGGGCCACAAGGACCATCTGTCACAGCAAATCCAATGTCCAAGAAGTGCCTaGAGCGACCGTAGAAGGATG +
Preference number: 4 (lower is better)
Translates to: RSATITVGHKDHLSQQIQCPRSA*SDRRRM
Trigger: CATCCTTCTACGGTCGCTTCAGGCACTTCTTGGACA...TTGGATTTGCTGTGACAGATGGTCCTTGTGGCCCACAGTGATGGTGGCTGAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR TCA 90 bp CCTTGCAGAGACAGCTCAAGAGACTTCTCTCCCCACCCCGAACGCCCGGCCTGGGAAAGGAATGTAACCTaGCATTCTGAAAGGCATGAA +
Preference number: 4 (lower is better)
Translates to: PCRDSSRDFSPHPERPAWERNVT*HSERHE
Trigger: TTCATGCCTTTCAGAATGTCAGGTTACATTCCTTTC...CCAGGCCGGGCGTTCGGGGTGGGGAGAGAAGTCTCTTGAGCTGTCTCTGCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR TCA 90 bp GTACATTCAGAGCCTGGTGTTCCCGGAATCTTCCAAGGGGTCTCTAGTGCTCTTTCTGGCTGCAATCTTTaGGGAGCCCACGAGGTTGCC +
Preference number: 4 (lower is better)
Translates to: VHSEPGVPGIFQGVSSALSGCNL*GAHEVA
Trigger: GGCAACCTCGTGGGCTCCTCAAAGATTGCAGCCAGA...AAGAGCACTAGAGACCCCTTGGAAGATTCCGGGAACACCAGGCTCTGAATGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR GCA 90 bp GAAAAACCACACCCAACGAGAGGTAATTTGCCCCCTTTCCTCCAGGCCTCTTTCAGGCACACGAGGCTATaGACAGGTAGGAGTAGCCGC +
Preference number: 4 (lower is better)
Translates to: EKPHPTRGNLPPFLQASFRHTRL*TGRSSR
Trigger: GCGGCTACTCCTACCTGTGCATAGCCTCGTGTGCCT...GAAAGAGGCCTGGAGGAAAGGGGGCAAATTACCTCTCGTTGGGTGTGGTTTTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CCA 90 bp CCTCTATTGCAGAAAGGTGTGGGTTGTGACAGCTTCAGTGGCTGCAGACTGGACGTGGATGCCAGCGTCTaGTTAGGCAAGAGAAGTCCC +
Preference number: 4 (lower is better)
Translates to: PLLQKGVGCDSFSGCRLDVDASV*LGKRSP
Trigger: GGGACTTCTCTTGCCTAACCAGACGCTGGCATCCAC...GTCCAGTCTGCAGCCACTGAAGCTGTCACAACCCACACCTTTCTGCAATAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 72 bp CTGCCTCGCGCCAGCCTTTTTCTGCAACCATACATGTaGATCTTCAGCCTGACCCCTCCTGTGTCAGATTCC +
Preference number: 4 (lower is better)
Translates to: LPRASLFLQPYM*IFSLTPPVSDS
Trigger: GGAATCTGACACAGGAGGGGTCAGGCTGAAGATCAACATGTATGGTTGCAGAAAAAGGCTGGCGCGAGGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 72 bp GAGTTGCCCCCTCAGCTCACCTGGGCTCAGGGTGTATaGGAGCATGGCAGAAATCACTCCACACACAAAACA +
Preference number: 4 (lower is better)
Translates to: ELPPQLTWAQGV*EHGRNHSTHKT
Trigger: TGTTTTGTGTGTGGAGTGATTTCTGCCATGCTCCAATACACCCTGAGCCCAGGTGAGCTGAGGGGGCAACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR TCA 90 bp TGGAGAGCCTGCTGTAGATTTGCCCTGACTGCTGGAAAAACCACACCCAACGAGTCTCCAGCATGGACATaGCGATTGGAGGAAGCACCA +
Preference number: 4 (lower is better)
Translates to: WRACCRFALTAGKTTPNESPAWT*RLEEAP
Trigger: TGGTGCTTCCTCCAATCGTCATGTCCATGCTGGAGA...CTCGTTGGGTGTGGTTTTTCCAGCAGTCAGGGCAAATCTACAGCAGGCTCTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CCA 90 bp CTACTTGTGGAAAAGAACCCTCCTGCAAAGCCCAGGCAGGATCCTCTCTCCTTGCAGGCATTATGGCTCTaGTTCAGCCACTGCCAGAAG +
Preference number: 4 (lower is better)
Translates to: LLVEKNPPAKPRQDPLSLQALWL*FSHCQK
Trigger: CTTCTGGCAGTGGCTGAACCAGAGCCATAATGCCTG...CAAGGAGAGAGGATCCTGCCTGGGCTTTGCAGGAGGGTTCTTTTCCACAAGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CCA 90 bp GGAACCCAAGTTCAGTCCTTCGCTTCCAGGCAGGGAATGGAAGCTCGGAGATGTCATGGACATGACGATTaGAGGAAGCACCAGAATGGG +
Preference number: 4 (lower is better)
Translates to: GTQVQSFASRQGMEARRCHGHDD*RKHQNG
Trigger: CCCATTCTGGTGCTTCCTCCAATCGTCATGTCCATG...ACATCTCCGAGCTTCCATTCCCTGCCTGGAAGCGAAGGACTGAACTTGGGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 72 bp AAGTCTGAAGTCCCTAGGTATGCTGAGGCATACGTGTaGAGCCTCACTCATACCTGCCCAAGGCTGGAAGCT +
Preference number: 4 (lower is better)
Translates to: KSEVPRYAEAYV*SLTHTCPRLEA
Trigger: AGCTTCCAGCCTTGGGCAGGTATGAGTGAGGCTCAACACGTATGCCTCAGCATACCTAGGGACTTCAGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CCA 90 bp GGGTGGACCAGAAGGAAGATATTCTTTACAGAAGTGAAGGATAAGAGAATCCCACGGGGCTTGCCCAGCTaGAAAGGGGGCGCATCTGTG +
Preference number: 4 (lower is better)
Translates to: GWTRRKIFFTEVKDKRIPRGLPS*KGGASV
Trigger: CACAGATGCGCCCCCTTTCCAGCTGGGCAAGCCCCG...TGGGATTCTCTTATCCTTCACTTCTGTAAAGAATATCTTCCTTCTGGTCCACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
CDS-3UTR CCA 90 bp GTTGAGCCTCACTCATACCTGCCCAAGGCTGGAAGCTTAGCATGGACCTGCCTCGAGAAGGCGAGTAGCTaGAGTGAACTTGTTTGCTTT +
Preference number: 4 (lower is better)
Translates to: VEPHSYLPKAGSLAWTCLEKASS*SELVCF
Trigger: AAAGCAAACAAGTTCACTCCAGCTACTCGCCTTCTC...GAGGCAGGTCCATGCTAAGCTTCCAGCCTTGGGCAGGTATGAGTGAGGCTCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR GCA 90 bp GTACATTCAGAGCCTGGTGTTCCCGGAATCTTCCAAGGGGTCTCTAGTGCTCTTTCAATCTCTGACATCTaGGGGAAAAGGCTGATGGCC +
Preference number: 4 (lower is better)
Translates to: VHSEPGVPGIFQGVSSALSISDI*GKRLMA
Trigger: GGCCATCAGCCTTTTCCCGCAGATGTCAGAGATTGA...AAGAGCACTAGAGACCCCTTGGAAGATTCCGGGAACACCAGGCTCTGAATGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CCA 90 bp GCACTTTCCAGTCCAGAATCCACCTTTGAGATGCCTGGAATGTGCACATCTGAGCCACGTTGCAGATATTaGCACTGGCTACTGCAGGGA +
Preference number: 4 (lower is better)
Translates to: ALSSPESTFEMPGMCTSEPRCRY*HWLLQG
Trigger: TCCCTGCAGTAGCCAGTGCCAATATCTGCAACGTGG...CTCAGATGTGCACATTCCAGGCATCTCAAAGGTGGATTCTGGACTGGAAAGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR TCA 90 bp ATATTCTTTACAGAAGTGAAGGATAAGAGAATCCCATTACCTACAGAGCCAGATCGCCGCGGACGCCGCTaGGGCTGTGGTTGCTGTATC +
Preference number: 4 (lower is better)
Translates to: IFFTEVKDKRIPLPTEPDRRGRR*GCGCCI
Trigger: GATACAGCAACCACAGCCTCAGCGGCGTCCGCGGCG...ATCTGGCTCTGTAGGTAATGGGATTCTCTTATCCTTCACTTCTGTAAAGAATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
CDS-3UTR GCA 90 bp AACTGGAACAACAAGGCAACTGAAATGCAGATCTCAAAACCACGATTAAATATTGCTGGAAGCGGGGCTTaGCCAGCTGGAAAGGGGGCG +
Preference number: 4 (lower is better)
Translates to: NWNNKATEMQISKPRLNIAGSGA*PAGKGA
Trigger: CGCCCCCTTTCCAGCTGGGCAAGCCCCGCTTCCAGC...AATATTTAATCGTGGTTTTGAGATCTGCATTTCAGTTGCCTTGTTGTTCCAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
CDS-3UTR GCA 90 bp AGGTGCTTTTGTAGGCTAAGTGCTGGCCATTTCCAGAATGGCCTGATGCACTTTGCATCAGGACCACGTTaGAGATATTGGCACTGGCTA +
Preference number: 4 (lower is better)
Translates to: RCFCRLSAGHFQNGLMHFASGPR*RYWHWL
Trigger: TAGCCAGTGCCAATATCTGCAACGTGGTCCTGATGC...AAAGTGCATCAGGCCATTCTGGAAATGGCCAGCACTTAGCCTACAAAAGCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CCA 90 bp AGGTGCTTTTGTAGGCTAAGTGCTGGCCATTTCCAGAATGGCCTGATGCACTTTTTGACACAGGCATTATaGCTCTGGTTCAGCCACTGC +
Preference number: 4 (lower is better)
Translates to: RCFCRLSAGHFQNGLMHFLTQAL*LWFSHC
Trigger: GCAGTGGCTGAACCAGAGCCATAATGCCTGTGTCAA...AAAGTGCATCAGGCCATTCTGGAAATGGCCAGCACTTAGCCTACAAAAGCACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CCA 90 bp GTTTATTCGGCTTACACTTCCATACTGCTATTTCATCACCAAAGGAAGTCTGGACGCACTTGGGACCCTTaGGAGGAGAGCTCAGCTTCG +
Preference number: 4 (lower is better)
Translates to: VYSAYTSILLFHHQRKSGRTWDP*EESSAS
Trigger: CGAAGCTGAGCTCTCCTCCCAAGGGTCCCAAGTGCG...TCCAGACTTCCTTTGGTGATGAAATAGCAGTATGGAAGTGTAAGCCGAATAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
CDS-3UTR CCA 90 bp TTCGGCTTACACTTCCATACTGCTATTTCATCACCAAAGGAAGTCTGGACTGGAGGGTCACTTCAGCTCTaGAAGCAGTCTGAGGGTCTG +
Preference number: 4 (lower is better)
Translates to: FGLHFHTAISSPKEVWTGGSLQL*KQSEGL
Trigger: CAGACCCTCAGACTGCTTCCAGAGCTGAAGTGACCC...TCCAGTCCAGACTTCCTTTGGTGATGAAATAGCAGTATGGAAGTGTAAGCCGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
3UTR CAA 72 bp AATGGCCTGATGCACTTTCCAGTCCAGAATCCACCTTaGAGATGCCTGGAATGTGCACATCTGAGTGAAGCA +
Preference number: 4 (lower is better)
Translates to: NGLMHFPVQNPP*RCLECAHLSEA
Trigger: TGCTTCACTCAGATGTGCACATTCCAGGCATCTCAAAGGTGGATTCTGGACTGGAAAGTGCATCAGGCCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR TCA 90 bp ATTCGGCTTACACTTCCATACTGCTATTTCATCACCAAAGGAAGTCTGGACTGGTGTCCAAGAAGTGCCTaGAGCGACCGTAGAAGGATG +
Preference number: 4 (lower is better)
Translates to: IRLTLPYCYFITKGSLDWCPRSA*SDRRRM
Trigger: CATCCTTCTACGGTCGCTTCAGGCACTTCTTGGACA...CCAGTCCAGACTTCCTTTGGTGATGAAATAGCAGTATGGAAGTGTAAGCCGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
CDS-3UTR GCA 90 bp TGGAAGAGCATCCTTCAGGGAATGTTTAAAAGTTATCAGAGGAGAGTTGGCCAGCCAGAAGACAGTGGATaGCAGCGTCTGGTTAGGCAA +
Preference number: 4 (lower is better)
Translates to: WKSILQGMFKSYQRRVGQPEDSG*QRLVRQ
Trigger: TTGCCTAACCAGACGCTGGCATCCACTGTCTTCTGG...CTGGCCAACTCTCCTCTGATAACTTTTAAACATTCCCTGAAGGATGCTCTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 72 bp TCCTTCAGGGAATGTTTAAAAGTTATCAGAGGAGAGTaGGCCAGGAACATCAGAGCTGGAGAGCCTGCTGTA +
Preference number: 4 (lower is better)
Translates to: SFRECLKVIRGE*ARNIRAGEPAV
Trigger: TACAGCAGGCTCTCCAGCTCTGATGTTCCTGGCCAACTCTCCTCTGATAACTTTTAAACATTCCCTGAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 72 bp AGTGCAGACATCTTGGTTCGGTGGCCATTTGGCATCTaGGACTTTTGGTTCCTGTACTCCCAAATTGCTTTC +
Preference number: 4 (lower is better)
Translates to: SADILVRWPFGI*DFWFLYSQIAF
Trigger: GAAAGCAATTTGGGAGTACAGGAACCAAAAGTCCAAGATGCCAAATGGCCACCGAACCAAGATGTCTGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
3UTR CAA 72 bp TTGGCATCTTGGACTTTTGGTTCCTGTACTCCCAAATaGCTTTCCAGAGATGGAAGAGCATCCTTCAGGGAA +
Preference number: 4 (lower is better)
Translates to: LASWTFGSCTPK*LSRDGRASFRE
Trigger: TTCCCTGAAGGATGCTCTTCCATCTCTGGAAAGCAATTTGGGAGTACAGGAACCAAAAGTCCAAGATGCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR GCA 90 bp AATAACTGGAACAACAAGGCAACTGAAATGCAGATCTCAAAACCACGATTAAATCTCCTGGGCGCAGGGTaGCATGCTTGTAATCCTCCA +
Preference number: 4 (lower is better)
Translates to: NNWNNKATEMQISKPRLNLLGAG*HACNPP
Trigger: TGGAGGATTACAAGCATGGCACCCTGCGCCCAGGAG...ATTTAATCGTGGTTTTGAGATCTGCATTTCAGTTGCCTTGTTGTTCCAGTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
CDS-3UTR GCA 90 bp TGGAAGAGCATCCTTCAGGGAATGTTTAAAAGTTATCAGAGGAGAGTTGGCCAGGGTAGCATTGCGGTTTaGATAGTTGACACAGGCATT +
Preference number: 4 (lower is better)
Translates to: WKSILQGMFKSYQRRVGQGSIAV*IVDTGI
Trigger: AATGCCTGTGTCAACTATGCAAACCGCAATGCTACC...CTGGCCAACTCTCCTCTGATAACTTTTAAACATTCCCTGAAGGATGCTCTTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR TCA 90 bp AGTGACTGTTTAATAACTGGAACAACAAGGCAACTGAAATGCAGATCTCAAAACTGTCCAAGAAGTGCCTaGAGCGACCGTAGAAGGATG +
Preference number: 4 (lower is better)
Translates to: SDCLITGTTRQLKCRSQNCPRSA*SDRRRM
Trigger: CATCCTTCTACGGTCGCTTCAGGCACTTCTTGGACA...GTTTTGAGATCTGCATTTCAGTTGCCTTGTTGTTCCAGTTATTAAACAGTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
CDS-3UTR TCA 90 bp GGGTGGACCAGAAGGAAGATATTCTTTACAGAAGTGAAGGATAAGAGAATCCCAATACAGAGTTACAGCTaGGAGTCCATTGAAAGGAGC +
Preference number: 4 (lower is better)
Translates to: GWTRRKIFFTEVKDKRIPIQSYS*ESIERS
Trigger: GCTCCTTTCAATGGACTCTCAGCTGTAACTCTGTAT...TGGGATTCTCTTATCCTTCACTTCTGTAAAGAATATCTTCCTTCTGGTCCACCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
CDS CCA 90 bp TGCCCAGCTGGAAAGGGGGCGCATCTGTGGAGGCGTTCGGGGCACTaGCCGCCGCGGACGCCGCTGAGGCTGTGGTTGCTGTATCCGCCA +
Preference number: 5 (lower is better)
Translates to: CPAGKGAHLWRRSGH*PPRTPLRLWLLYPP
Trigger: TGGCGGATACAGCAACCACAGCCTCAGCGGCGTCCGCGGCGGCCAGTGCCCCGAACGCCTCCACAGATGCGCCCCCTTTCCAGCTGGGCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
ENSMUST00000113788.2
CDS GCA 90 bp GCCAGCGGCAGGGCCAGGCCGAAGGCTGCCAGGCACACGAGGCTATaGACAGGTAGGAGTAGCCGCGGGCGTGCTTGCAAGAGAGCTGTC +
Preference number: 5 (lower is better)
Translates to: ASGRARPKAARHTRL*TGRSSRGRACKRAV
Trigger: GACAGCTCTCTTGCAAGCACGCCCGCGGCTACTCCTACCTGTGCATAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCGCTGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CAA 90 bp CCTCCTGTGTCAGATTCCAGGGTCATGAGCCAGGGTTCCCATCCTAGGGTGGACTGCTGGAAGCGGGGCTaGCCCAGCTGGAAAGGGGGC +
Preference number: 5 (lower is better)
Translates to: PPVSDSRVMSQGSHPRVDCWKRG*PSWKGG
Trigger: GCCCCCTTTCCAGCTGGGCAAGCCCCGCTTCCAGCA...GTCCACCCTAGGATGGGAACCCTGGCTCATGACCCTGGAATCTGACACAGGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS TCA 90 bp GTTGGCGTGTCCCCAAGTAAGGTTAATCATAGTCACGGTGCACCCTaGAGAGCCCAAGCGGGTGTGGATGGGGGCCAGCGCTGCGCAGCG +
Preference number: 5 (lower is better)
Translates to: VGVSPSKVNHSHGAP*RAQAGVDGGQRCAA
Trigger: CGCTGCGCAGCGCTGGCCCCCATCCACACCCGCTTGGGCTCTTCAGGGTGCACCGTGACTATGATTAACCTTACTTGGGGACACGCCAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
CDS TCA 90 bp GCTCCAATTGGGAGGTTTCAATCTCTGACATCTGCGGGAAAAGGCTaGTGGCCAGCGGCAGGGCCAGGCCGAAGGCTGCCAGGCACACGA +
Preference number: 5 (lower is better)
Translates to: APIGRFQSLTSAGKG*WPAAGPGRRLPGTR
Trigger: TCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTTTTCCCGCAGATGTCAGAGATTGAAACCTCCCAATTGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS TCA 90 bp GGTAGCCCGGGCTATCTCAGGCTCCAATTGGGAGGTTTCAATCTCTaGCATCTGCGGGAAAAGGCTGATGGCCAGCGGCAGGGCCAGGCC +
Preference number: 5 (lower is better)
Translates to: GSPGYLRLQLGGFNL*HLREKADGQRQGQA
Trigger: GGCCTGGCCCTGCCGCTGGCCATCAGCCTTTTCCCGCAGATGTCAGAGATTGAAACCTCCCAATTGGAGCCTGAGATAGCCCGGGCTACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CAA 90 bp CCTTGCAGAGACAGCTCAAGAGACTTCTCTCCCCACCCCGAACGCCCGGCCTGGGTAATCCTCCAGCAGTaGCACAGCCTCTCTGAGACG +
Preference number: 5 (lower is better)
Translates to: PCRDSSRDFSPHPERPAWVILQQ*HSLSET
Trigger: CGTCTCAGAGAGGCTGTGCAACTGCTGGAGGATTAC...CCAGGCCGGGCGTTCGGGGTGGGGAGAGAAGTCTCTTGAGCTGTCTCTGCAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS GCA 90 bp CGGGCTATCTCAGGCTCCAATTGGGAGGTTTCAATCTCTGACATCTaGGGGAAAAGGCTGATGGCCAGCGGCAGGGCCAGGCCGAAGGCT +
Preference number: 5 (lower is better)
Translates to: RAISGSNWEVSISDI*GKRLMASGRARPKA
Trigger: AGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTTTTCCCGCAGATGTCAGAGATTGAAACCTCCCAATTGGAGCCTGAGATAGCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CAA 90 bp CCCATCAATGCAAACCAGTTCCCATGCTCCTCTGGCTCCCGCCACCTGTCCTGCGTCTGGCTGCAATCTTaGAGGAGCCCACGAGGTTGC +
Preference number: 5 (lower is better)
Translates to: PINANQFPCSSGSRHLSCVWLQS*RSPRGC
Trigger: GCAACCTCGTGGGCTCCTCAAAGATTGCAGCCAGAC...GCAGGACAGGTGGCGGGAGCCAGAGGAGCATGGGAACTGGTTTGCATTGATGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS TCA 90 bp CCACCAGGGCAGAGCCATGCTTTTCCATGGGTGACCCGGCAGCATTaGGCACCAGCCAACTGCTTCTCCAGCATGGACATGACGATTGGA +
Preference number: 5 (lower is better)
Translates to: PPGQSHAFPWVTRQH*APANCFSSMDMTIG
Trigger: TCCAATCGTCATGTCCATGCTGGAGAAGCAGTTGGCTGGTGCTCAATGCTGCCGGGTCACCCATGGAAAAGCATGGCTCTGCCCTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059034.13
CDS GCA 90 bp TGGCAAGCCCAGGGTCACTTCAGCTCTGGAAGCAGTCTGAGGGTCTaGGGCGTAATAACTAAGCTCCCATGCTCCTGGCTCACAGACCTG +
Preference number: 5 (lower is better)
Translates to: WQAQGHFSSGSSLRV*GVITKLPCSWLTDL
Trigger: CAGGTCTGTGAGCCAGGAGCATGGGAGCTTAGTTATTACGCCGCAGACCCTCAGACTGCTTCCAGAGCTGAAGTGACCCTGGGCTTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
CDS-3UTR CAA 90 bp GGAACCCAAGTTCAGTCCTTCGCTTCCAGGCAGGGAATGGAAGCTCGGAGATGTGAGGAGCCCACGAGGTaGCCATCAGCATCCAGGACA +
Preference number: 5 (lower is better)
Translates to: GTQVQSFASRQGMEARRCEEPTR*PSASRT
Trigger: TGTCCTGGATGCTGATGGCAACCTCGTGGGCTCCTC...ACATCTCCGAGCTTCCATTCCCTGCCTGGAAGCGAAGGACTGAACTTGGGTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS TCA 90 bp ACGTGTCAGAGCTGTCTCCAGCAGGGCGTGTCTGGCTGCAATCTTTaGGGAGCCCACGAGGTTGCCATCAGCATCCAGGACATCAATTCC +
Preference number: 5 (lower is better)
Translates to: TCQSCLQQGVSGCNL*GAHEVAISIQDINS
Trigger: GGAATTGATGTCCTGGATGCTGATGGCAACCTCGTGGGCTCCTCAAAGATTGCAGCCAGACACGCCCTGCTGGAGACAGCTCTGACACGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS CCA 90 bp TGGCTCTGGTTCAGCCACTGCCAGAAGACAGTGGATGCCAGCGTCTaGTTAGGCAAGAGAAGTCCCACCACAATTGGCGTCCCGAAAGGA +
Preference number: 5 (lower is better)
Translates to: WLWFSHCQKTVDASV*LGKRSPTTIGVPKG
Trigger: TCCTTTCGGGACGCCAATTGTGGTGGGACTTCTCTTGCCTAACCAGACGCTGGCATCCACTGTCTTCTGGCAGTGGCTGAACCAGAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS-3UTR CAA 90 bp TTGATCTTCAGCCTGACCCCTCCTGTGTCAGATTCCAGGGTCATGAGCCAGGGTACCACGTTGCAGATATaGGCACTGGCTACTGCAGGG +
Preference number: 5 (lower is better)
Translates to: LIFSLTPPVSDSRVMSQGTTLQI*ALATAG
Trigger: CCCTGCAGTAGCCAGTGCCAATATCTGCAACGTGGT...ACCCTGGCTCATGACCCTGGAATCTGACACAGGAGGGGTCAGGCTGAAGATCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS CCA 90 bp GCGTGCTTGCAAGAGAGCTGTCTTCTCCAGCATGGACATGACGATTaGAGGAAGCACCAGAATGGGCATAGGCAGAACCACACGTGTCAG +
Preference number: 5 (lower is better)
Translates to: ACLQESCLLQHGHDD*RKHQNGHRQNHTCQ
Trigger: CTGACACGTGTGGTTCTGCCTATGCCCATTCTGGTGCTTCCTCCAATCGTCATGTCCATGCTGGAGAAGACAGCTCTCTTGCAAGCACGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS CCA 90 bp GCATTGAGCACCAGCCAACTGCTTCTCCAGCATGGACATGACGATTaGAGGAAGCACCAGAATGGGCATAGGCAGAACCACACGTGTCAG +
Preference number: 5 (lower is better)
Translates to: ALSTSQLLLQHGHDD*RKHQNGHRQNHTCQ
Trigger: CTGACACGTGTGGTTCTGCCTATGCCCATTCTGGTGCTTCCTCCAATCGTCATGTCCATGCTGGAGAAGCAGTTGGCTGGTGCTCAATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059034.13
CDS CCA 90 bp CTAACTCCCCATATCGCATCAGGACCACGTTGCAGATATTGGCACTaGCTACTGCAGGGAAGGGTACAAATCTCTGCACGAGAAGGCGAG +
Preference number: 5 (lower is better)
Translates to: LTPHIASGPRCRYWH*LLQGRVQISAREGE
Trigger: CTCGCCTTCTCGTGCAGAGATTTGTACCCTTCCCTGCAGTAGCCAGTGCCAATATCTGCAACGTGGTCCTGATGCGATATGGGGAGTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS-3UTR CAA 90 bp CCTCCTGTGTCAGATTCCAGGGTCATGAGCCAGGGTTCCCATCCTAGGGTGGACTGTAGGATAGCCTGTTaGATTTTCTGTGCACTCCAG +
Preference number: 5 (lower is better)
Translates to: PPVSDSRVMSQGSHPRVDCRIAC*IFCALQ
Trigger: CTGGAGTGCACAGAAAATCAAACAGGCTATCCTACA...GTCCACCCTAGGATGGGAACCCTGGCTCATGACCCTGGAATCTGACACAGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CAA 90 bp ACCCTCCTGCAAAGCCCAGGCAGGATCCTCTCTCCTTGTTCCCACAGAACAGTGATGAAGATCTTCTCGTaGGTGTCCGGGTGTAGGATA +
Preference number: 5 (lower is better)
Translates to: TLLQSPGRILSPCSHRTVMKIFS*VSGCRI
Trigger: TATCCTACACCCGGACACCAACGAGAAGATCTTCAT...CACTGTTCTGTGGGAACAAGGAGAGAGGATCCTGCCTGGGCTTTGCAGGAGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CAA 90 bp TGTTCAGCTCACCCAGACCCTGCCTCCTTAGGTAGAGCTATCTCTTCCTCTGTGGAAGTCCCACCACAATaGGCGTCCCGAAAGGAATGT +
Preference number: 5 (lower is better)
Translates to: CSAHPDPASLGRAISSSVEVPPQ*ASRKEC
Trigger: ACATTCCTTTCGGGACGCCAATTGTGGTGGGACTTC...CACAGAGGAAGAGATAGCTCTACCTAAGGAGGCAGGGTCTGGGTGAGCTGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS-3UTR CAA 90 bp TTGGGGTGGAAAGGGTTTATTCGGCTTACACTTCCATACTGCTATTTCATCACCGCGCACTTGGGACCCTaGGGAGGAGAGCTCAGCTTC +
Preference number: 5 (lower is better)
Translates to: LGWKGFIRLTLPYCYFITAHLGP*GGELSF
Trigger: GAAGCTGAGCTCTCCTCCCAAGGGTCCCAAGTGCGC...GGTGATGAAATAGCAGTATGGAAGTGTAAGCCGAATAAACCCTTTCCACCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
CDS CCA 90 bp CTTCCTCTAACTCCCCATATCGCATCAGGACCACGTTGCAGATATTaGCACTGGCTACTGCAGGGAAGGGTACAAATCTCTGCACGAGAA +
Preference number: 5 (lower is better)
Translates to: LPLTPHIASGPRCRY*HWLLQGRVQISARE
Trigger: TTCTCGTGCAGAGATTTGTACCCTTCCCTGCAGTAGCCAGTGCCAATATCTGCAACGTGGTCCTGATGCGATATGGGGAGTTAGAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS-3UTR CAA 90 bp TCAGGGTGTATTGGAGCATGGCAGAAATCACTCCACACACAAAACACACCTACGCGCATCAGGACCACGTaGCAGATATTGGCACTGGCT +
Preference number: 5 (lower is better)
Translates to: SGCIGAWQKSLHTQNTPTRIRTT*QILALA
Trigger: AGCCAGTGCCAATATCTGCAACGTGGTCCTGATGCG...CGTAGGTGTGTTTTGTGTGTGGAGTGATTTCTGCCATGCTCCAATACACCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS CCA 90 bp TACTGCAGGGAAGGGTACAAATCTCTGCACGAGAAGGCGAGTAGCTaGAGTGAACTTGTTTGCTTTCTGAACCAGCACATTAAGGCCCAC +
Preference number: 5 (lower is better)
Translates to: YCREGYKSLHEKASS*SELVCFLNQHIKAH
Trigger: GTGGGCCTTAATGTGCTGGTTCAGAAAGCAAACAAGTTCACTCCAGCTACTCGCCTTCTCGTGCAGAGATTTGTACCCTTCCCTGCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS-3UTR CAA 90 bp ATATTCTTTACAGAAGTGAAGGATAAGAGAATCCCATTACCTACAGAGCCAGATTGCTGGAAGCGGGGCTaGCCCAGCTGGAAAGGGGGC +
Preference number: 5 (lower is better)
Translates to: IFFTEVKDKRIPLPTEPDCWKRG*PSWKGG
Trigger: GCCCCCTTTCCAGCTGGGCAAGCCCCGCTTCCAGCA...ATCTGGCTCTGTAGGTAATGGGATTCTCTTATCCTTCACTTCTGTAAAGAATAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
CDS GCA 90 bp TACAAATCTCTGCACGAGAAGGCGAGTAGCTGGAGTGAACTTGTTTaGTTTCTGAACCAGCACATTAAGGCCCACAGCAATGGAAACAGC +
Preference number: 5 (lower is better)
Translates to: YKSLHEKASSWSELV*FLNQHIKAHSNGNS
Trigger: GCTGTTTCCATTGCTGTGGGCCTTAATGTGCTGGTTCAGAAAGCAAACAAGTTCACTCCAGCTACTCGCCTTCTCGTGCAGAGATTTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS-3UTR CAA 90 bp GGGTGGACCAGAAGGAAGATATTCTTTACAGAAGTGAAGGATAAGAGAATCCCAGTAATCCTCCAGCAGTaGCACAGCCTCTCTGAGACG +
Preference number: 5 (lower is better)
Translates to: GWTRRKIFFTEVKDKRIPVILQQ*HSLSET
Trigger: CGTCTCAGAGAGGCTGTGCAACTGCTGGAGGATTAC...TGGGATTCTCTTATCCTTCACTTCTGTAAAGAATATCTTCCTTCTGGTCCACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
CDS-3UTR CAA 90 bp GGGTGGACCAGAAGGAAGATATTCTTTACAGAAGTGAAGGATAAGAGAATCCCAACAGCTGAGAGTCCATaGAAAGGAGCTTCTTCTGGT +
Preference number: 5 (lower is better)
Translates to: GWTRRKIFFTEVKDKRIPTAESP*KGASSG
Trigger: ACCAGAAGAAGCTCCTTTCAATGGACTCTCAGCTGT...TGGGATTCTCTTATCCTTCACTTCTGTAAAGAATATCTTCCTTCTGGTCCACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
CDS CCA 72 bp TCACGGTGCACCCTGAAGAGCCCAAGCGGGTGTGGATaGGGGCCAGCGCTGCGCAGCGGCCGGGAGCAGCGC +
Preference number: 6 (lower is better)
Translates to: SRCTLKSPSGCG*GPALRSGREQR
Trigger: GCGCTGCTCCCGGCCGCTGCGCAGCGCTGGCCCCCATCCACACCCGCTTGGGCTCTTCAGGGTGCACCGTGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
CDS CCA 72 bp GGAAAGGGGGCGCATCTGTGGAGGCGTTCGGGGCACTaGCCGCCGCGGACGCCGCTGAGGCTGTGGTTGCTG +
Preference number: 6 (lower is better)
Translates to: GKGAHLWRRSGH*PPRTPLRLWLL
Trigger: CAGCAACCACAGCCTCAGCGGCGTCCGCGGCGGCCAGTGCCCCGAACGCCTCCACAGATGCGCCCCCTTTCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
ENSMUST00000113788.2
CDS CCA 72 bp ATAGTCACGGTGCACCCTGAAGAGCCCAAGCGGGTGTaGATGGGGGCCAGCGCTGCGCAGCGGCCGGGAGCA +
Preference number: 6 (lower is better)
Translates to: IVTVHPEEPKRV*MGASAAQRPGA
Trigger: TGCTCCCGGCCGCTGCGCAGCGCTGGCCCCCATCCACACCCGCTTGGGCTCTTCAGGGTGCACCGTGACTAT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
CDS GCA 72 bp AGGGCCAGGCCGAAGGCTGCCAGGCACACGAGGCTATaGACAGGTAGGAGTAGCCGCGGGCGTGCTTGCAAG +
Preference number: 6 (lower is better)
Translates to: RARPKAARHTRL*TGRSSRGRACK
Trigger: CTTGCAAGCACGCCCGCGGCTACTCCTACCTGTGCATAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS TCA 72 bp GGGAGGTTTCAATCTCTGACATCTGCGGGAAAAGGCTaGTGGCCAGCGGCAGGGCCAGGCCGAAGGCTGCCA +
Preference number: 6 (lower is better)
Translates to: GRFQSLTSAGKG*WPAAGPGRRLP
Trigger: TGGCAGCCTTCGGCCTGGCCCTGCCGCTGGCCATCAGCCTTTTCCCGCAGATGTCAGAGATTGAAACCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS CCA 72 bp GCAGCGCAAGTAGGACTGGGGCGCACTTGGGACCCTTaGGAGGAGAGCTCAGCTTCGGAGAATGACACAGCG +
Preference number: 6 (lower is better)
Translates to: AAQVGLGRTWDP*EESSASENDTA
Trigger: CGCTGTGTCATTCTCCGAAGCTGAGCTCTCCTCCCAAGGGTCCCAAGTGCGCCCCAGTCCTACTTGCGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
CDS TCA 72 bp AGCTGTCTCCAGCAGGGCGTGTCTGGCTGCAATCTTTaGGGAGCCCACGAGGTTGCCATCAGCATCCAGGAC +
Preference number: 6 (lower is better)
Translates to: SCLQQGVSGCNL*GAHEVAISIQD
Trigger: GTCCTGGATGCTGATGGCAACCTCGTGGGCTCCTCAAAGATTGCAGCCAGACACGCCCTGCTGGAGACAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS TCA 72 bp TCCCTCCACCAGGGCAGAGCCATGCTTTTCCATGGGTaGCCCGGCAGCATTGAGCACCAGCCAACTGCTTCT +
Preference number: 6 (lower is better)
Translates to: SLHQGRAMLFHG*PGSIEHQPTAS
Trigger: AGAAGCAGTTGGCTGGTGCTCAATGCTGCCGGGTCACCCATGGAAAAGCATGGCTCTGCCCTGGTGGAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059034.13
CDS CAA 90 bp TCCACCAGGGCAGAGCCATGCTTTTCCATGGGTGACCCGGCAGCATaGAGCACCAGCCAACTGCTTCTCCAGCATGGACATGACGATTGG +
Preference number: 6 (lower is better)
Translates to: STRAEPCFSMGDPAA*STSQLLLQHGHDDW
Trigger: CCAATCGTCATGTCCATGCTGGAGAAGCAGTTGGCTGGTGCTCAATGCTGCCGGGTCACCCATGGAAAAGCATGGCTCTGCCCTGGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059034.13
CDS GCA 72 bp AGGCTATGCACAGGTAGGAGTAGCCGCGGGCGTGCTTaGAAGAGAGCTGTCTTCTCCAGCATGGACATGACG +
Preference number: 6 (lower is better)
Translates to: RLCTGRSSRGRA*KRAVFSSMDMT
Trigger: CGTCATGTCCATGCTGGAGAAGACAGCTCTCTTGCAAGCACGCCCGCGGCTACTCCTACCTGTGCATAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS GCA 72 bp TCAGGCTCCAATTGGGAGGTTTCAATCTCTGACATCTaGGGGAAAAGGCTGATGGCCAGCGGCAGGGCCAGG +
Preference number: 6 (lower is better)
Translates to: SGSNWEVSISDI*GKRLMASGRAR
Trigger: CCTGGCCCTGCCGCTGGCCATCAGCCTTTTCCCGCAGATGTCAGAGATTGAAACCTCCCAATTGGAGCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS TCA 72 bp CAGAGCCATGCTTTTCCATGGGTGACCCGGCAGCATTaGGCACCAGCCAACTGCTTCTCCAGCATGGACATG +
Preference number: 6 (lower is better)
Translates to: QSHAFPWVTRQH*APANCFSSMDM
Trigger: CATGTCCATGCTGGAGAAGCAGTTGGCTGGTGCTCAATGCTGCCGGGTCACCCATGGAAAAGCATGGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059034.13
CDS GCA 72 bp CAGGGTCACTTCAGCTCTGGAAGCAGTCTGAGGGTCTaGGGCGTAATAACTAAGCTCCCATGCTCCTGGCTC +
Preference number: 6 (lower is better)
Translates to: QGHFSSGSSLRV*GVITKLPCSWL
Trigger: GAGCCAGGAGCATGGGAGCTTAGTTATTACGCCGCAGACCCTCAGACTGCTTCCAGAGCTGAAGTGACCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113787.2
CDS CAA 72 bp GCAGAGCCATGCTTTTCCATGGGTGACCCGGCAGCATaGAGCACCAGCCAACTGCTTCTCCAGCATGGACAT +
Preference number: 6 (lower is better)
Translates to: AEPCFSMGDPAA*STSQLLLQHGH
Trigger: ATGTCCATGCTGGAGAAGCAGTTGGCTGGTGCTCAATGCTGCCGGGTCACCCATGGAAAAGCATGGCTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059034.13
CDS CAA 90 bp TCCAGCAGGGCGTGTCTGGCTGCAATCTTTGAGGAGCCCACGAGGTaGCCATCAGCATCCAGGACATCAATTCCTTCCTCTAACTCCCCA +
Preference number: 6 (lower is better)
Translates to: SSRACLAAIFEEPTR*PSASRTSIPSSNSP
Trigger: TGGGGAGTTAGAGGAAGGAATTGATGTCCTGGATGCTGATGGCAACCTCGTGGGCTCCTCAAAGATTGCAGCCAGACACGCCCTGCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS TCA 72 bp GGCTATCTCAGGCTCCAATTGGGAGGTTTCAATCTCTaGCATCTGCGGGAAAAGGCTGATGGCCAGCGGCAG +
Preference number: 6 (lower is better)
Translates to: GYLRLQLGGFNL*HLREKADGQRQ
Trigger: CTGCCGCTGGCCATCAGCCTTTTCCCGCAGATGTCAGAGATTGAAACCTCCCAATTGGAGCCTGAGATAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045846.12
CDS CCA 72 bp TGGTGGCCAGGAATAGGCCTGTTCATTTGTAACTCCTaGGCGCAGGGTGCCATGCTTGTAATCCTCCAGCAG +
Preference number: 6 (lower is better)
Translates to: WWPGIGLFICNS*AQGAMLVILQQ
Trigger: CTGCTGGAGGATTACAAGCATGGCACCCTGCGCCCAGGAGTTACAAATGAACAGGCCTATTCCTGGCCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2
CDS CAA 72 bp TGGGCGCAGGGTGCCATGCTTGTAATCCTCCAGCAGTaGCACAGCCTCTCTGAGACGTTTCTCAGTGACAAA +
Preference number: 6 (lower is better)
Translates to: WAQGAMLVILQQ*HSLSETFLSDK
Trigger: TTTGTCACTGAGAAACGTCTCAGAGAGGCTGTGCAACTGCTGGAGGATTACAAGCATGGCACCCTGCGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
ENSMUST00000113788.2
CDS CAA 72 bp GCGTGTCTGGCTGCAATCTTTGAGGAGCCCACGAGGTaGCCATCAGCATCCAGGACATCAATTCCTTCCTCT +
Preference number: 6 (lower is better)
Translates to: ACLAAIFEEPTR*PSASRTSIPSS
Trigger: AGAGGAAGGAATTGATGTCCTGGATGCTGATGGCAACCTCGTGGGCTCCTCAAAGATTGCAGCCAGACACGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS CAA 90 bp TGTAACTCCTGGGCGCAGGGTGCCATGCTTGTAATCCTCCAGCAGTaGCACAGCCTCTCTGAGACGTTTCTCAGTGACAAAGAGTGTTCG +
Preference number: 6 (lower is better)
Translates to: CNSWAQGAMLVILQQ*HSLSETFLSDKECS
Trigger: CGAACACTCTTTGTCACTGAGAAACGTCTCAGAGAGGCTGTGCAACTGCTGGAGGATTACAAGCATGGCACCCTGCGCCCAGGAGTTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
ENSMUST00000113788.2
CDS CAA 90 bp CCTTCCTCTAACTCCCCATATCGCATCAGGACCACGTTGCAGATATaGGCACTGGCTACTGCAGGGAAGGGTACAAATCTCTGCACGAGA +
Preference number: 6 (lower is better)
Translates to: PSSNSPYRIRTTLQI*ALATAGKGTNLCTR
Trigger: TCTCGTGCAGAGATTTGTACCCTTCCCTGCAGTAGCCAGTGCCAATATCTGCAACGTGGTCCTGATGCGATATGGGGAGTTAGAGGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS CCA 72 bp ACTCCCCATATCGCATCAGGACCACGTTGCAGATATTaGCACTGGCTACTGCAGGGAAGGGTACAAATCTCT +
Preference number: 6 (lower is better)
Translates to: TPHIASGPRCRY*HWLLQGRVQIS
Trigger: AGAGATTTGTACCCTTCCCTGCAGTAGCCAGTGCCAATATCTGCAACGTGGTCCTGATGCGATATGGGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS CAA 72 bp AACTCCCCATATCGCATCAGGACCACGTTGCAGATATaGGCACTGGCTACTGCAGGGAAGGGTACAAATCTC +
Preference number: 6 (lower is better)
Translates to: NSPYRIRTTLQI*ALATAGKGTNL
Trigger: GAGATTTGTACCCTTCCCTGCAGTAGCCAGTGCCAATATCTGCAACGTGGTCCTGATGCGATATGGGGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS CCA 72 bp GAAGGGTACAAATCTCTGCACGAGAAGGCGAGTAGCTaGAGTGAACTTGTTTGCTTTCTGAACCAGCACATT +
Preference number: 6 (lower is better)
Translates to: EGYKSLHEKASS*SELVCFLNQHI
Trigger: AATGTGCTGGTTCAGAAAGCAAACAAGTTCACTCCAGCTACTCGCCTTCTCGTGCAGAGATTTGTACCCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045846.12
ENSMUST00000059034.13
CDS TCA 72 bp ACACATGTAAATACAGAGTTACAGCTGAGAGTCCATTaGAAGGAGCTTCTTCTGGTGGCCAGGAATAGGCCT +
Preference number: 6 (lower is better)
Translates to: THVNTELQLRVH*KELLLVARNRP
Trigger: AGGCCTATTCCTGGCCACCAGAAGAAGCTCCTTTCAATGGACTCTCAGCTGTAACTCTGTATTTACATGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113788.2