Pregenerated sensors for SFXN4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063698Ensembl transcript IDs: ENSMUST00000080806.10, ENSMUST00000124921.2, ENSMUST00000135808.8
Found 112 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCAACAGAAATACCATGGGTGCTGTCACAGGCAGGAAAGCAATTCTaGGTCCCAGGGATCCTCCAGTCTCCACCTTCCAAGTGCTGGGGT | + |
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Preference number: 1 (lower is better) Translates to: STEIPWVLSQAGKQF*VPGILQSPPSKCWG Trigger: ACCCCAGCACTTGGAAGGTGGAGACTGGAGGATCCCTGGGACTCAGAATTGCTTTCCTGCCTGTGACAGCACCCATGGTATTTCTGTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR TCA 90 bp | CTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTaGCTCTTACTTCATCTCAGCAGTCCCCTGGGTGCTGCTCTTCTT | + |
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Preference number: 1 (lower is better) Translates to: LQTGLFTGSHYPSPG*LLLHLSSPLGAALL Trigger: AAGAAGAGCAGCACCCAGGGGACTGCTGAGATGAAGTAAGAGTCAGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
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| 3UTR GCA 90 bp | GAGCAAGGCAAAAAGCCACAAGACAATGCCAGCAGGGGGTGCTATTaGACTGAGCTGAAGCAGCACCTGAAGCCTTGGGTTCTTAACACA | + |
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Preference number: 1 (lower is better) Translates to: EQGKKPQDNASRGCY*TELKQHLKPWVLNT Trigger: TGTGTTAAGAACCCAAGGCTTCAGGTGCTGCTTCAGCTCAGTGCAATAGCACCCCCTGCTGGCATTGTCTTGTGGCTTTTTGCCTTGCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR CCA 90 bp | GACTCTTACTTCATCTCAGCAGTCCCCTGGGTGCTGCTCTTCTTTTaGTTAGACTCAGGCACTGAAGCCAGCTTGCTGCACAAGTGTTGC | + |
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Preference number: 1 (lower is better) Translates to: DSYFISAVPWVLLFF*LDSGTEASLLHKCC Trigger: GCAACACTTGTGCAGCAAGCTGGCTTCAGTGCCTGAGTCTAACCAAAAGAAGAGCAGCACCCAGGGGACTGCTGAGATGAAGTAAGAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
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| 3UTR CCA 90 bp | AGAGATGCCCCAGTGACTACAGAGCAAGGCCCAGAGGAAGGGAGATaGGGATCCCTAAGAGAGTTGACTATATATAGACCTGGACTGGTA | + |
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Preference number: 1 (lower is better) Translates to: RDAPVTTEQGPEEGR*GSLRELTIYRPGLV Trigger: TACCAGTCCAGGTCTATATATAGTCAACTCTCTTAGGGATCCCCATCTCCCTTCCTCTGGGCCTTGCTCTGTAGTCACTGGGGCATCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR TCA 90 bp | TCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTaGCTCCCTCTTCTGGAGTGTCTAAAGACAGCTACAGTGTACTTA | + |
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Preference number: 1 (lower is better) Translates to: SGVQIPATTWWLTTI*LPLLECLKTATVYL Trigger: TAAGTACACTGTAGCTGTCTTTAGACACTCCAGAAGAGGGAGTCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR GCA 90 bp | CCACCTTCCAAGTGCTGGGGTTACATGCCTAGCTTTCTACAAGGGTaGTGGAAATCTGAACTCTGGTACTCATGCTTACACAAAAGGTAC | + |
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Preference number: 1 (lower is better) Translates to: PPSKCWGYMPSFLQG*WKSELWYSCLHKRY Trigger: GTACCTTTTGTGTAAGCATGAGTACCAGAGTTCAGATTTCCAGCACCCTTGTAGAAAGCTAGGCATGTAACCCCAGCACTTGGAAGGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR CCA 90 bp | CCTTCCAAGTGCTGGGGTTACATGCCTAGCTTTCTACAAGGGTGCTaGAAATCTGAACTCTGGTACTCATGCTTACACAAAAGGTACTTG | + |
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Preference number: 1 (lower is better) Translates to: PSKCWGYMPSFLQGC*KSELWYSCLHKRYL Trigger: CAAGTACCTTTTGTGTAAGCATGAGTACCAGAGTTCAGATTTCCAGCACCCTTGTAGAAAGCTAGGCATGTAACCCCAGCACTTGGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR CCA 90 bp | GATTTCGCTGTATCTTTAATAGCCTTTCTTCCAGCTTTTCTGGAATaGCCTACGACATGGCCTTCCTTATCCATCACCTCAATTCCTCGA | + |
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Preference number: 1 (lower is better) Translates to: DFAVSLIAFLPAFLE*PTTWPSLSITSIPR Trigger: TCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGGCTATTAAAGATACAGCGAAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
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| 3UTR TCA 90 bp | CCATTGGTGATGTTAAAGGCTGTGGTGTATCCATACAAGCAACCCTaGGTTAAAATGATGGACTTTATTCCAGTGTCTGGCATCATCAAC | + |
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Preference number: 1 (lower is better) Translates to: PLVMLKAVVYPYKQP*VKMMDFIPVSGIIN Trigger: GTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACTCAGGGTTGCTTGTATGGATACACCACAGCCTTTAACATCACCAATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR CCA 90 bp | TCTTTAATAGCCTTTCTTCCAGCTTTTCTGGAATGGCCTACGACATaGCCTTCCTTATCCATCACCTCAATTCCTCGATGGTTTTCAAAA | + |
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Preference number: 1 (lower is better) Translates to: SLIAFLPAFLEWPTT*PSLSITSIPRWFSK Trigger: TTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGGCTATTAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
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| 3UTR TCA 90 bp | TATTCGGGGGATACTTCATTTGAAAGAGATGAGGAATTAATCCAATaGAAGTTGAAGACACAGACACCCCTGCTCCCAACAATGTTCTCT | + |
|
Preference number: 1 (lower is better) Translates to: YSGDTSFERDEELIQ*KLKTQTPLLPTMFS Trigger: AGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGATTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
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| 3UTR CCA 90 bp | GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAGAAATTTTaGCTAGGAAGTATGGTTTGTTTGTTTGTTTGTTTGTTTGTTAAG | + |
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Preference number: 1 (lower is better) Translates to: EGRKEGRKEGRKKKF*LGSMVCLFVCLFVK Trigger: CTTAACAAACAAACAAACAAACAAACAAACCATACTTCCTAGCCAAAATTTCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR TCA 90 bp | GGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGACTCCGCAGGAAAGCAATTCTaGGTCCCAGGGATCCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: GLEFKSQQPHGGSQPSDSAGKQF*VPGILQ Trigger: CTGGAGGATCCCTGGGACTCAGAATTGCTTTCCTGC...GGAGTCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR GCA 90 bp | TCCTTCCCCGGGCTGACTCTTACTTCATCTCAGCAGTCCCCTGGGTGCTGCTCTAGCTTTCTACAAGGGTaGTGGAAATCTGAACTCTGG | + |
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Preference number: 2 (lower is better) Translates to: SFPGLTLTSSQQSPGCCSSFLQG*WKSELW Trigger: CCAGAGTTCAGATTTCCAGCACCCTTGTAGAAAGCT...AGAGCAGCACCCAGGGGACTGCTGAGATGAAGTAAGAGTCAGCCCGGGGAAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR GCA 90 bp | GCACCCAACTGCTCTTCCAAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGCACTGAAGCCAGCTTaGTGCACAAGTGTTGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: APNCSSKGLEFKSQQPHGALKPA*CTSVAG Trigger: CCCAGCAACACTTGTGCAGCAAGCTGGCTTCAGTGC...ACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTTGGAAGAGCAGTTGGGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR GCA 90 bp | GTGGCCGGGAGCAGGTCTGATAAGAGAAATGGGGTGCTATGGAAACCAGTGGAAAGACACAGACACCCCTaGTCCCAACAATGTTCTCTC | + |
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Preference number: 2 (lower is better) Translates to: VAGSRSDKRNGVLWKPVERHRHP*SQQCSL Trigger: GAGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCT...TTCCACTGGTTTCCATAGCACCCCATTTCTCTTATCAGACCTGCTCCCGGCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR TCA 90 bp | ACTGCTCTTCCAAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACTGGGTTCTTAACACATaGAATTATGCCTGTCTGGGA | + |
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Preference number: 2 (lower is better) Translates to: TALPKVWSSNPSNHMVAHWVLNT*NYACLG Trigger: TCCCAGACAGGCATAATTTCATGTGTTAAGAACCCA...GTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTTGGAAGAGCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR CCA 90 bp | ATCAGGGTCCTTTCAACAGAAACCAGGGAAGTAGACAGAATGCTTGCAGTGTGGTTCTTCCAGCTTTTCTaGAATGGCCTACGACATGGC | + |
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Preference number: 2 (lower is better) Translates to: IRVLSTETREVDRMLAVWFFQLF*NGLRHG Trigger: GCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAA...CCACACTGCAAGCATTCTGTCTACTTCCCTGGTTTCTGTTGAAAGGACCCTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR TCA 90 bp | AGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTGACTCTTACTTCATCTAGGGTGCTGGAAATCTaGACTCTGGTACTCATGCTT | + |
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Preference number: 2 (lower is better) Translates to: RFIHRVTLSFPGLTLTSSRVLEI*TLVLML Trigger: AAGCATGAGTACCAGAGTTCAGATTTCCAGCACCCT...AGATGAAGTAAGAGTCAGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR GCA 90 bp | GACTCTTACTTCATCTCAGCAGTCCCCTGGGTGCTGCTCTTCTTTTGGTTAGACGAACTCTGGTACTCATaGTTACACAAAAGGTACTTG | + |
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Preference number: 2 (lower is better) Translates to: DSYFISAVPWVLLFFWLDELWYS*LHKRYL Trigger: CAAGTACCTTTTGTGTAAGCATGAGTACCAGAGTTC...GTCTAACCAAAAGAAGAGCAGCACCCAGGGGACTGCTGAGATGAAGTAAGAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR GCA 90 bp | AACTGCTCTTCCAAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCAAGTAGACAGAATGCTTaGAGTGTGGGATCAGATAAA | + |
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Preference number: 2 (lower is better) Translates to: NCSSKGLEFKSQQPHGGSSRQNA*SVGSDK Trigger: TTTATCTGATCCCACACTGCAAGCATTCTGTCTACT...TGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTTGGAAGAGCAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR CCA 90 bp | TATTCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTGTTTCTACAAGGGTGCTaGAAATCTGAACTCTGGTAC | + |
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Preference number: 2 (lower is better) Translates to: YSTPDRFIHRVTLSFPGLFLQGC*KSELWY Trigger: GTACCAGAGTTCAGATTTCCAGCACCCTTGTAGAAA...CAGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR CAA 90 bp | GAGTTGACTATATATAGACCTGGACTGGTATTGAGCAGGAAGCTGTaGTTGGCTAGGGGCCTCAGTTATTCTAGAAATAGAAGTATCAGG | + |
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Preference number: 2 (lower is better) Translates to: ELTIYRPGLVLSRKL*LARGLSYSRNRSIR Trigger: CCTGATACTTCTATTTCTAGAATAACTGAGGCCCCTAGCCAACAACAGCTTCCTGCTCAATACCAGTCCAGGTCTATATATAGTCAACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR TCA 90 bp | CTCCCAACAATGTTCTCTCTACTGGTCCATGACTATAACTGGCATTTCCATTGGCCATACAAGCAACCCTaGGTTAAAATGATGGACTTT | + |
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Preference number: 2 (lower is better) Translates to: LPTMFSLLVHDYNWHFHWPYKQP*VKMMDF Trigger: AAAGTCCATCATTTTAACTCAGGGTTGCTTGTATGG...CCAATGGAAATGCCAGTTATAGTCATGGACCAGTAGAGAGAACATTGTTGGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR TCA 90 bp | TTTCTTTCAAGTATTCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCTGTGGAAACATGCTaGATGACACTGGCACCATCA | + |
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Preference number: 2 (lower is better) Translates to: FLSSIQLQTGLFTGSHYPSVETC*MTLAPS Trigger: TGATGGTGCCAGTGTCATTCAGCATGTTTCCACAGA...AGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGAATACTTGAAAGAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR CCA 90 bp | TACCCCTCTGTAATAGAAGAGTTCCTTTTCTTCTGTAGAAGATTGAATCTTCTCTTCTTCCAGCTTTTCTaGAATGGCCTACGACATGGC | + |
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Preference number: 2 (lower is better) Translates to: YPSVIEEFLFFCRRLNLLFFQLF*NGLRHG Trigger: GCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAA...GAGAAGATTCAATCTTCTACAGAAGAAAAGGAACTCTTCTATTACAGAGGGGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
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| 3UTR-3UTR TCA 90 bp | TTCGCTGTATCTTTAATAGCCTTTCTTCCAGCTTTTCTGGAATGGCCTACGACAAACCCTGAGTTAAAATaGTGGACTTTATTCCAGTGT | + |
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Preference number: 2 (lower is better) Translates to: FAVSLIAFLPAFLEWPTTNPELK*WTLFQC Trigger: ACACTGGAATAAAGTCCATCATTTTAACTCAGGGTT...TGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGGCTATTAAAGATACAGCGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR-3UTR CCA 90 bp | TTCCAAACAGGAGATAAACTTGTTCCTATACCCCTCTGTAATAGAAGAGTTCCTCAATGTTCTCTCTACTaGTCCATGACTATAACTGGC | + |
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Preference number: 2 (lower is better) Translates to: FQTGDKLVPIPLCNRRVPQCSLY*SMTITG Trigger: GCCAGTTATAGTCATGGACCAGTAGAGAGAACATTG...AGGAACTCTTCTATTACAGAGGGGTATAGGAACAAGTTTATCTCCTGTTTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
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| 3UTR CAA 90 bp | AAGAAGAAATTTTGGCTAGGAAGTATGGTTTGTTTGTTTGTTTGTTaGTTTGTTAAGGCAGTTTCAATGCTCCTGGGAGTAGTCTATAGA | + |
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Preference number: 2 (lower is better) Translates to: KKKFWLGSMVCLFVC*FVKAVSMLLGVVYR Trigger: TCTATAGACTACTCCCAGGAGCATTGAAACTGCCTTAACAAACAAACAAACAAACAAACAAACCATACTTCCTAGCCAAAATTTCTTCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR CCA 72 bp | GTCCCAGGGATCCTCCAGTCTCCACCTTCCAAGTGCTaGGGTTACATGCCTAGCTTTCTACAAGGGTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: VPGILQSPPSKC*GYMPSFLQGCW Trigger: CCAGCACCCTTGTAGAAAGCTAGGCATGTAACCCCAGCACTTGGAAGGTGGAGACTGGAGGATCCCTGGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR TCA 72 bp | GAAGCCAGCTTGCTGCACAAGTGTTGCTGGGAACCCTaGGGACCATGGCAGTGCTCTTTAAGGGGCCAAAGA | + |
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Preference number: 3 (lower is better) Translates to: EASLLHKCCWEP*GPWQCSLRGQR Trigger: TCTTTGGCCCCTTAAAGAGCACTGCCATGGTCCTCAGGGTTCCCAGCAACACTTGTGCAGCAAGCTGGCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
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| 3UTR CCA 72 bp | GGCATCCAAAGAGCCAAGTACACTGTAGCAACTGGTTaGGGTATGAGGGCCTGGCAGAATGGTAGTCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: GIQRAKYTVATG*GMRAWQNGSPA Trigger: GGCTGGACTACCATTCTGCCAGGCCCTCATACCCCAACCAGTTGCTACAGTGTACTTGGCTCTTTGGATGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR TCA 72 bp | ATACCATGGGTGCTGTCACAGGCAGGAAAGCAATTCTaGGTCCCAGGGATCCTCCAGTCTCCACCTTCCAAG | + |
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Preference number: 3 (lower is better) Translates to: IPWVLSQAGKQF*VPGILQSPPSK Trigger: CTTGGAAGGTGGAGACTGGAGGATCCCTGGGACTCAGAATTGCTTTCCTGCCTGTGACAGCACCCATGGTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR TCA 72 bp | CTGGGTGCTGCTCTTCTTTTGGTTAGACTCAGGCACTaGAGCCAGCTTGCTGCACAAGTGTTGCTGGGAACC | + |
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Preference number: 3 (lower is better) Translates to: LGAALLLVRLRH*SQLAAQVLLGT Trigger: GGTTCCCAGCAACACTTGTGCAGCAAGCTGGCTTCAGTGCCTGAGTCTAACCAAAAGAAGAGCAGCACCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
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| 3UTR-3UTR CAA 90 bp | CCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTGACTCTTACTCTTGCTGCACAAGTGTaGCTGGGAACCCTGAGGACC | + |
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Preference number: 3 (lower is better) Translates to: PDRFIHRVTLSFPGLTLTLAAQV*LGTLRT Trigger: GGTCCTCAGGGTTCCCAGCAACACTTGTGCAGCAAG...AGTAAGAGTCAGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
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| 3UTR TCA 72 bp | GGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTaGCTCTTACTTCATCTCAGCAGTCCCCTGGGTGCT | + |
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Preference number: 3 (lower is better) Translates to: GLFTGSHYPSPG*LLLHLSSPLGA Trigger: AGCACCCAGGGGACTGCTGAGATGAAGTAAGAGTCAGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
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| 3UTR TCA 72 bp | ACAGTCTGCTACGAAATAGGACCAGGCAACAGGTCTTaGGGTAGTGTGGCCGGGAGCAGGTCTGATAAGAGA | + |
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Preference number: 3 (lower is better) Translates to: TVCYEIGPGNRS*GSVAGSRSDKR Trigger: TCTCTTATCAGACCTGCTCCCGGCCACACTACCTCAAGACCTGTTGCCTGGTCCTATTTCGTAGCAGACTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR GCA 72 bp | AAAAAGCCACAAGACAATGCCAGCAGGGGGTGCTATTaGACTGAGCTGAAGCAGCACCTGAAGCCTTGGGTT | + |
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Preference number: 3 (lower is better) Translates to: KKPQDNASRGCY*TELKQHLKPWV Trigger: AACCCAAGGCTTCAGGTGCTGCTTCAGCTCAGTGCAATAGCACCCCCTGCTGGCATTGTCTTGTGGCTTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR CCA 72 bp | GCCGGGAGCAGGTCTGATAAGAGAAATGGGGTGCTATaGAAACCAGTGGAAGGGGTACCTCACTCAATACTG | + |
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Preference number: 3 (lower is better) Translates to: AGSRSDKRNGVL*KPVEGVPHSIL Trigger: CAGTATTGAGTGAGGTACCCCTTCCACTGGTTTCCATAGCACCCCATTTCTCTTATCAGACCTGCTCCCGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR GCA 72 bp | TCCTCCAGTCTCCACCTTCCAAGTGCTGGGGTTACATaGCTAGCTTTCTACAAGGGTGCTGGAAATCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: SSSLHLPSAGVT*LAFYKGAGNLN Trigger: GTTCAGATTTCCAGCACCCTTGTAGAAAGCTAGGCATGTAACCCCAGCACTTGGAAGGTGGAGACTGGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR CCA 72 bp | AAGAATCAGAACTTTGGGGCTGGTGAGATGGCTCAGTaGGTAAGAGCACCCAACTGCTCTTCCAAAGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: KNQNFGAGEMAQ*VRAPNCSSKGL Trigger: CAGACCTTTGGAAGAGCAGTTGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCAAAGTTCTGATTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR TCA 72 bp | CAAATCCCAGCAACCACATGGTGGCTCACAACCATCTaGCTCCCTCTTCTGGAGTGTCTAAAGACAGCTACA | + |
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Preference number: 3 (lower is better) Translates to: QIPATTWWLTTI*LPLLECLKTAT Trigger: TGTAGCTGTCTTTAGACACTCCAGAAGAGGGAGTCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR CCA 72 bp | GCCTTTCTTCCAGCTTTTCTGGAATGGCCTACGACATaGCCTTCCTTATCCATCACCTCAATTCCTCGATGG | + |
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Preference number: 3 (lower is better) Translates to: AFLPAFLEWPTT*PSLSITSIPRW Trigger: CCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCTTTCAAGTATTCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTCTTGCTGCACAAGTGTaGCTGGGAACCCTGAGGACC | + |
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Preference number: 3 (lower is better) Translates to: FLSSIQLQTGLFTGSHYPLAAQV*LGTLRT Trigger: GGTCCTCAGGGTTCCCAGCAACACTTGTGCAGCAAG...AGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGAATACTTGAAAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000135808.8 |
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| 3UTR CCA 72 bp | TGCTGGGGTTACATGCCTAGCTTTCTACAAGGGTGCTaGAAATCTGAACTCTGGTACTCATGCTTACACAAA | + |
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Preference number: 3 (lower is better) Translates to: CWGYMPSFLQGC*KSELWYSCLHK Trigger: TTTGTGTAAGCATGAGTACCAGAGTTCAGATTTCCAGCACCCTTGTAGAAAGCTAGGCATGTAACCCCAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| 3UTR CCA 72 bp | GTATCTTTAATAGCCTTTCTTCCAGCTTTTCTGGAATaGCCTACGACATGGCCTTCCTTATCCATCACCTCA | + |
|
Preference number: 3 (lower is better) Translates to: VSLIAFLPAFLE*PTTWPSLSITS Trigger: TGAGGTGATGGATAAGGAAGGCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGGCTATTAAAGATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
||
| 3UTR CCA 72 bp | AACATTCATTCCACTGACTTGGGCAAGAAAGACGATTaGCAAGGTTCTTTTAAGCCAAAAGTTATTCGGGGG | + |
|
Preference number: 3 (lower is better) Translates to: NIHSTDLGKKDD*QGSFKPKVIRG Trigger: CCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTGCCCAAGTCAGTGGAATGAATGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
||
| 3UTR CCA 72 bp | AAACTGCGGGATGCAAAAACATTCATTCCACTGACTTaGGCAAGAAAGACGATTGGCAAGGTTCTTTTAAGC | + |
|
Preference number: 3 (lower is better) Translates to: KLRDAKTFIPLT*ARKTIGKVLLS Trigger: GCTTAAAAGAACCTTGCCAATCGTCTTTCTTGCCCAAGTCAGTGGAATGAATGTTTTTGCATCCCGCAGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
||
| 3UTR TCA 72 bp | ATGTTAAAGGCTGTGGTGTATCCATACAAGCAACCCTaGGTTAAAATGATGGACTTTATTCCAGTGTCTGGC | + |
|
Preference number: 3 (lower is better) Translates to: MLKAVVYPYKQP*VKMMDFIPVSG Trigger: GCCAGACACTGGAATAAAGTCCATCATTTTAACTCAGGGTTGCTTGTATGGATACACCACAGCCTTTAACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| 3UTR GCA 72 bp | CCTTTCAACAGAAACCAGGGAAGTAGACAGAATGCTTaGAGTGTGGGATCAGATAAAATAAGTAGGGAAACA | + |
|
Preference number: 3 (lower is better) Translates to: PFNRNQGSRQNA*SVGSDKISRET Trigger: TGTTTCCCTACTTATTTTATCTGATCCCACACTGCAAGCATTCTGTCTACTTCCCTGGTTTCTGTTGAAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| 3UTR TCA 72 bp | GATACTTCATTTGAAAGAGATGAGGAATTAATCCAATaGAAGTTGAAGACACAGACACCCCTGCTCCCAACA | + |
|
Preference number: 3 (lower is better) Translates to: DTSFERDEELIQ*KLKTQTPLLPT Trigger: TGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGATTAATTCCTCATCTCTTTCAAATGAAGTATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
||
| CDS-3UTR TCA 90 bp | TTCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTGACTTCAGGGGCCAAGGCTaGGGTCCCAAACAGCACTGC | + |
|
Preference number: 4 (lower is better) Translates to: FNSRQVYSQGHIILPRADFRGQG*GPKQHC Trigger: GCAGTGCTGTTTGGGACCTCAGCCTTGGCCCCTGAA...GTCAGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR CCA 90 bp | CAGGCACTGAAGCCAGCTTGCTGCACAAGTGTTGCTGGGAACCCTGAGGACCATTCAACAGAAATACCATaGGTGCTGTCACAGGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: QALKPACCTSVAGNPEDHSTEIP*VLSQAG Trigger: TCCTGCCTGTGACAGCACCCATGGTATTTCTGTTGA...ATGGTCCTCAGGGTTCCCAGCAACACTTGTGCAGCAAGCTGGCTTCAGTGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR CCA 90 bp | GGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGACTCCGCAGGTCGAAAAAGATaGGGGATCAACTTGCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GLEFKSQQPHGGSQPSDSAGRKR*GINLLL Trigger: CAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGC...GGAGTCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAGACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| CDS-3UTR TCA 90 bp | TCCTTCCCCGGGCTGACTCTTACTTCATCTCAGCAGTCCCCTGGGTGCTGCTCTCCATACAAGCAACCCTaGGTTAAAATGATGGACTTT | + |
|
Preference number: 4 (lower is better) Translates to: SFPGLTLTSSQQSPGCCSPYKQP*VKMMDF Trigger: AAAGTCCATCATTTTAACTCAGGGTTGCTTGTATGG...AGAGCAGCACCCAGGGGACTGCTGAGATGAAGTAAGAGTCAGCCCGGGGAAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000124921.2 ENSMUST00000135808.8 |
||
| 3UTR CAA 72 bp | GGCCCAGAGGAAGGGAGATGGGGATCCCTAAGAGAGTaGACTATATATAGACCTGGACTGGTATTGAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: GPEEGRWGSLRE*TIYRPGLVLSR Trigger: CCTGCTCAATACCAGTCCAGGTCTATATATAGTCAACTCTCTTAGGGATCCCCATCTCCCTTCCTCTGGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| CDS-3UTR GCA 90 bp | CTGCTCTTCTTTTGGTTAGACTCAGGCACTGAAGCCAGCTTGCTGCACAAGTGTCAGAAATACCATGGGTaGTGTCACAGGCAGGAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: LLFFWLDSGTEASLLHKCQKYHG*CHRQES Trigger: GCTTTCCTGCCTGTGACAGCACCCATGGTATTTCTG...ACACTTGTGCAGCAAGCTGGCTTCAGTGCCTGAGTCTAACCAAAAGAAGAGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR GCA 90 bp | GACTCTTACTTCATCTCAGCAGTCCCCTGGGTGCTGCTCTTCTTTTGGTTAGACAGACACAGACACCCCTaGTCCCAACAATGTTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: DSYFISAVPWVLLFFWLDRHRHP*SQQCSL Trigger: GAGAGAACATTGTTGGGAGCAGGGGTGTCTGTGTCT...GTCTAACCAAAAGAAGAGCAGCACCCAGGGGACTGCTGAGATGAAGTAAGAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR GCA 90 bp | TCCTTCCCCGGGCTGACTCTTACTTCATCTCAGCAGTCCCCTGGGTGCTGCTCTTTCAAAACTGCGGGATaGAAAAACATTCATTCCACT | + |
|
Preference number: 4 (lower is better) Translates to: SFPGLTLTSSQQSPGCCSFKTAG*KNIHST Trigger: AGTGGAATGAATGTTTTTGCATCCCGCAGTTTTGAA...AGAGCAGCACCCAGGGGACTGCTGAGATGAAGTAAGAGTCAGCCCGGGGAAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR CCA 90 bp | TCAGCAGTCCCCTGGGTGCTGCTCTTCTTTTGGTTAGACTCAGGCACTGAAGCCCAATGTTCTCTCTACTaGTCCATGACTATAACTGGC | + |
|
Preference number: 4 (lower is better) Translates to: SAVPWVLLFFWLDSGTEAQCSLY*SMTITG Trigger: GCCAGTTATAGTCATGGACCAGTAGAGAGAACATTG...GGCTTCAGTGCCTGAGTCTAACCAAAAGAAGAGCAGCACCCAGGGGACTGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR TCA 90 bp | CCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTGACTCTTACTGTCAGGGTGCACAGTTaGAAGACTCTTATTCCATGC | + |
|
Preference number: 4 (lower is better) Translates to: PDRFIHRVTLSFPGLTLTVRVHS*KTLIPC Trigger: GCATGGAATAAGAGTCTTTCAACTGTGCACCCTGAC...AGTAAGAGTCAGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
||
| CDS-3UTR TCA 90 bp | CCCCGGGCTGACTCTTACTTCATCTCAGCAGTCCCCTGGGTGCTGCTCTTCTTTAACCCTGAGTTAAAATaGTGGACTTTATTCCAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: PRADSYFISAVPWVLLFFNPELK*WTLFQC Trigger: ACACTGGAATAAAGTCCATCATTTTAACTCAGGGTT...AAAGAAGAGCAGCACCCAGGGGACTGCTGAGATGAAGTAAGAGTCAGCCCGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000124921.2 ENSMUST00000135808.8 |
||
| CDS-3UTR TCA 90 bp | TTCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTGACTCTGTGGAAACATGCTaGATGACACTGGCACCATCA | + |
|
Preference number: 4 (lower is better) Translates to: FNSRQVYSQGHIILPRADSVETC*MTLAPS Trigger: TGATGGTGCCAGTGTCATTCAGCATGTTTCCACAGA...GTCAGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR GCA 90 bp | GTATTCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTGGTCCCAAACAGCACTaGTCTGGATTTCGCTGTATC | + |
|
Preference number: 4 (lower is better) Translates to: VFNSRQVYSQGHIILPRAGPKQH*SGFRCI Trigger: GATACAGCGAAATCCAGAGCAGTGCTGTTTGGGACC...AGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGAATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR GCA 90 bp | TTACTTCATCTCAGCAGTCCCCTGGGTGCTGCTCTTCTTTTGGTTAGACTCAGGTCTCTTCAAGCTGACTaGACTGGATCTGTCCAATCT | + |
|
Preference number: 4 (lower is better) Translates to: LLHLSSPLGAALLLVRLRSLQAD*TGSVQS Trigger: AGATTGGACAGATCCAGTGCAGTCAGCTTGAAGAGA...CCTGAGTCTAACCAAAAGAAGAGCAGCACCCAGGGGACTGCTGAGATGAAGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR CCA 90 bp | AAGTATTCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGGCAGGTCGAAAAAGATaGGGGATCAACTTGCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KYSTPDRFIHRVTLSFPGAGRKR*GINLLL Trigger: CAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGC...CCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGAATACTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000135808.8 |
||
| CDS-3UTR TCA 90 bp | TGTCCAATCTGTGGAAACATGCTGAATGACACTGGCACCATCAGTCCCATCATAGTCAGGGTGCACAGTTaGAAGACTCTTATTCCATGC | + |
|
Preference number: 4 (lower is better) Translates to: CPICGNMLNDTGTISPIIVRVHS*KTLIPC Trigger: GCATGGAATAAGAGTCTTTCAACTGTGCACCCTGAC...TATGATGGGACTGATGGTGCCAGTGTCATTCAGCATGTTTCCACAGATTGGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
||
| CDS-3UTR CCA 90 bp | AAGTATTCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGTTCTTCCAGCTTTTCTaGAATGGCCTACGACATGGC | + |
|
Preference number: 4 (lower is better) Translates to: KYSTPDRFIHRVTLSFPGFFQLF*NGLRHG Trigger: GCCATGTCGTAGGCCATTCCAGAAAAGCTGGAAGAA...CCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGAATACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR CCA 90 bp | CTCTTACTTCATCTCAGCAGTCCCCTGGGTGCTGCTCTTCTTTTGGTTAGACTCGTCCTTTTAAAGATGTaGATAAAGAGTTCAGGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: LLLHLSSPLGAALLLVRLVLLKM*IKSSGA Trigger: GGCCCCTGAACTCTTTATCCACATCTTTAAAAGGAC...GAGTCTAACCAAAAGAAGAGCAGCACCCAGGGGACTGCTGAGATGAAGTAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR TCA 90 bp | TCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTGACTCCATACAAGCAACCCTaGGTTAAAATGATGGACTTT | + |
|
Preference number: 4 (lower is better) Translates to: STPDRFIHRVTLSFPGLTPYKQP*VKMMDF Trigger: AAAGTCCATCATTTTAACTCAGGGTTGCTTGTATGG...AGTCAGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000124921.2 ENSMUST00000135808.8 |
||
| CDS-3UTR CCA 90 bp | TTCGCTGTATCTTTAATAGCCTTTCTTCCAGCTTTTCTGGAATGGCCTACGACAGCAGGTCGAAAAAGATaGGGGATCAACTTGCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: FAVSLIAFLPAFLEWPTTAGRKR*GINLLL Trigger: CAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGC...TGTCGTAGGCCATTCCAGAAAAGCTGGAAGAAAGGCTATTAAAGATACAGCGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
||
| CDS-3UTR TCA 90 bp | GGATTTCGCTGTATCTTTAATAGCCTTTCTTCCAGCTTTTCTGGAATGGCCTACGTCAGGGTGCACAGTTaGAAGACTCTTATTCCATGC | + |
|
Preference number: 4 (lower is better) Translates to: GFRCIFNSLSSSFSGMAYVRVHS*KTLIPC Trigger: GCATGGAATAAGAGTCTTTCAACTGTGCACCCTGAC...GTAGGCCATTCCAGAAAAGCTGGAAGAAAGGCTATTAAAGATACAGCGAAATCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
||
| CDS-3UTR GCA 90 bp | ACTGCTCTTCCAAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAGACTCTTATTCCATaGGTCTTTAATCACTTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: TALPKVWSSNPSNHMVAHKTLIP*VFNHLV Trigger: AACCAAGTGATTAAAGACGCATGGAATAAGAGTCTT...GTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAGACCTTTGGAAGAGCAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| 3UTR CAA 72 bp | ATATATAGACCTGGACTGGTATTGAGCAGGAAGCTGTaGTTGGCTAGGGGCCTCAGTTATTCTAGAAATAGA | + |
|
Preference number: 4 (lower is better) Translates to: IYRPGLVLSRKL*LARGLSYSRNR Trigger: TCTATTTCTAGAATAACTGAGGCCCCTAGCCAACAACAGCTTCCTGCTCAATACCAGTCCAGGTCTATATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| CDS-3UTR TCA 90 bp | TCCACTGACTTGGGCAAGAAAGACGATTGGCAAGGTTCTTTTAAGCCAAAAGTTAACCCTGAGTTAAAATaGTGGACTTTATTCCAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: STDLGKKDDWQGSFKPKVNPELK*WTLFQC Trigger: ACACTGGAATAAAGTCCATCATTTTAACTCAGGGTT...AACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTGCCCAAGTCAGTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124921.2 |
||
| CDS-3UTR GCA 90 bp | ACCATGGCAGTGCTCTTTAAGGGGCCAAAGATTTCCAAACAGGAGATAAACTTGAAGACTCTTATTCCATaGGTCTTTAATCACTTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: TMAVLFKGPKISKQEINLKTLIP*VFNHLV Trigger: AACCAAGTGATTAAAGACGCATGGAATAAGAGTCTT...CAAGTTTATCTCCTGTTTGGAAATCTTTGGCCCCTTAAAGAGCACTGCCATGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
||
| CDS-3UTR GCA 90 bp | ACAGGAGATAAACTTGTTCCTATACCCCTCTGTAATAGAAGAGTTCCTTTTCTTATCAACAGAAATACCTaGAGGTCGAAAAAGATGGGG | + |
|
Preference number: 4 (lower is better) Translates to: TGDKLVPIPLCNRRVPFLINRNT*RSKKMG Trigger: CCCCATCTTTTTCGACCTGCAGGTATTTCTGTTGAT...AAGAAAAGGAACTCTTCTATTACAGAGGGGTATAGGAACAAGTTTATCTCCTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000124921.2 |
||
| 3UTR CAA 72 bp | TTTAAGGGGCCAAAGATTTCCAAACAGGAGATAAACTaGTTCCTATACCCCTCTGTAATAGAAGAGTTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: FKGPKISKQEIN*FLYPSVIEEFL Trigger: AAGGAACTCTTCTATTACAGAGGGGTATAGGAACAAGTTTATCTCCTGTTTGGAAATCTTTGGCCCCTTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 |
||
| 3UTR CAA 72 bp | CAGTGTAGTGTTTGTACCCCAGATAAGGTATACCTTTaGATGATTTCTTTCAAGTATTCAACTCCAGACAGG | + |
|
Preference number: 4 (lower is better) Translates to: QCSVCTPDKVYL*MISFKYSTPDR Trigger: CCTGTCTGGAGTTGAATACTTGAAAGAAATCATCAAAAGGTATACCTTATCTGGGGTACAAACACTACACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| 3UTR CAA 72 bp | TTTTGGCTAGGAAGTATGGTTTGTTTGTTTGTTTGTTaGTTTGTTAAGGCAGTTTCAATGCTCCTGGGAGTA | + |
|
Preference number: 4 (lower is better) Translates to: FWLGSMVCLFVC*FVKAVSMLLGV Trigger: TACTCCCAGGAGCATTGAAACTGCCTTAACAAACAAACAAACAAACAAACAAACCATACTTCCTAGCCAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| CDS-3UTR GCA 90 bp | TCTTTCAAGTATTCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCAAGACTCTTATTCCATaGGTCTTTAATCACTTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: SFKYSTPDRFIHRVTLSFKTLIP*VFNHLV Trigger: AACCAAGTGATTAAAGACGCATGGAATAAGAGTCTT...GAAGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGAATACTTGAAAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080806.10 ENSMUST00000135808.8 |
||
| CDS-3UTR CAA 90 bp | TCAGCAGTCCCCTGGGTGCTGCTCTTCTTTTGGTTAGACTCAGGCACTGAAGCCAGATGGGGGATCAACTaGCTGCTGTCAGGGTGCACA | + |
|
Preference number: 5 (lower is better) Translates to: SAVPWVLLFFWLDSGTEARWGIN*LLSGCT Trigger: TGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCT...GGCTTCAGTGCCTGAGTCTAACCAAAAGAAGAGCAGCACCCAGGGGACTGCTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
||
| CDS-3UTR CAA 90 bp | GTGGCCGGGAGCAGGTCTGATAAGAGAAATGGGGTGCTATGGAAACCAGTGGAAAGATGGGGGATCAACTaGCTGCTGTCAGGGTGCACA | + |
|
Preference number: 5 (lower is better) Translates to: VAGSRSDKRNGVLWKPVERWGIN*LLSGCT Trigger: TGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCT...TTCCACTGGTTTCCATAGCACCCCATTTCTCTTATCAGACCTGCTCCCGGCCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| CDS-3UTR CAA 90 bp | CAGGCACTGAAGCCAGCTTGCTGCACAAGTGTTGCTGGGAACCCTGAGGACCATATTCATTCCACTGACTaGGGCAAGAAAGACGATTGG | + |
|
Preference number: 5 (lower is better) Translates to: QALKPACCTSVAGNPEDHIHSTD*GKKDDW Trigger: CCAATCGTCTTTCTTGCCCAAGTCAGTGGAATGAAT...ATGGTCCTCAGGGTTCCCAGCAACACTTGTGCAGCAAGCTGGCTTCAGTGCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS-3UTR CAA 90 bp | TCAGCAGTCCCCTGGGTGCTGCTCTTCTTTTGGTTAGACTCAGGCACTGAAGCCTGTCAGGGTGCACAGTaGAAAGACTCTTATTCCATG | + |
|
Preference number: 5 (lower is better) Translates to: SAVPWVLLFFWLDSGTEACQGAQ*KDSYSM Trigger: CATGGAATAAGAGTCTTTCAACTGTGCACCCTGACA...GGCTTCAGTGCCTGAGTCTAACCAAAAGAAGAGCAGCACCCAGGGGACTGCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
||
| CDS GCA 90 bp | CAGGCAGGAAAGCTGCAGGTCGAAAAAGATGGGGGATCAACTTGCTaGTGTCAGGGTGCACAGTTGAAAGACTCTTATTCCATGCGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: QAGKLQVEKDGGSTC*CQGAQLKDSYSMRL Trigger: AAGACGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGCTTTCCTGCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS GCA 90 bp | TCACAGGCAGGAAAGCTGCAGGTCGAAAAAGATGGGGGATCAACTTaGTGCTGTCAGGGTGCACAGTTGAAAGACTCTTATTCCATGCGT | + |
|
Preference number: 5 (lower is better) Translates to: SQAGKLQVEKDGGST*CCQGAQLKDSYSMR Trigger: ACGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGCTTTCCTGCCTGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
||
| CDS GCA 90 bp | CATCAGCAATCCCTGCAGGTCGAAAAAGATGGGGGATCAACTTGCTaGTGTCAGGGTGCACAGTTGAAAGACTCTTATTCCATGCGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: HQQSLQVEKDGGSTC*CQGAQLKDSYSMRL Trigger: AAGACGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGGATTGCTGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| CDS GCA 90 bp | TTCCATCAGCAATCCCTGCAGGTCGAAAAAGATGGGGGATCAACTTaGTGCTGTCAGGGTGCACAGTTGAAAGACTCTTATTCCATGCGT | + |
|
Preference number: 5 (lower is better) Translates to: FHQQSLQVEKDGGST*CCQGAQLKDSYSMR Trigger: ACGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGGATTGCTGATGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
||
| CDS GCA 90 bp | CAACAGAAATACCTGCAGGTCGAAAAAGATGGGGGATCAACTTGCTaGTGTCAGGGTGCACAGTTGAAAGACTCTTATTCCATGCGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: QQKYLQVEKDGGSTC*CQGAQLKDSYSMRL Trigger: AAGACGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGTATTTCTGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124921.2 |
||
| CDS GCA 90 bp | CATCAACAGAAATACCTGCAGGTCGAAAAAGATGGGGGATCAACTTaGTGCTGTCAGGGTGCACAGTTGAAAGACTCTTATTCCATGCGT | + |
|
Preference number: 5 (lower is better) Translates to: HQQKYLQVEKDGGST*CCQGAQLKDSYSMR Trigger: ACGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGTATTTCTGTTGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124921.2 |
||
| CDS-3UTR CAA 90 bp | GTATTCAACTCCAGACAGGTTTATTCACAGGGTCACATTATCCTTCCCCGGGCTTGTCAGGGTGCACAGTaGAAAGACTCTTATTCCATG | + |
|
Preference number: 5 (lower is better) Translates to: VFNSRQVYSQGHIILPRACQGAQ*KDSYSM Trigger: CATGGAATAAGAGTCTTTCAACTGTGCACCCTGACA...AGCCCGGGGAAGGATAATGTGACCCTGTGAATAAACCTGTCTGGAGTTGAATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
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| CDS-3UTR CAA 90 bp | TATCAGTGTAGTGTTTGTACCCCAGATAAGGTATACCTTTTGATGATTTCTTTCTGTCAGGGTGCACAGTaGAAAGACTCTTATTCCATG | + |
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Preference number: 5 (lower is better) Translates to: YQCSVCTPDKVYLLMISFCQGAQ*KDSYSM Trigger: CATGGAATAAGAGTCTTTCAACTGTGCACCCTGACA...GAAAGAAATCATCAAAAGGTATACCTTATCTGGGGTACAAACACTACACTGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| CDS CCA 72 bp | GCTGTCACAGGCAGGAAAGCTGCAGGTCGAAAAAGATaGGGGATCAACTTGCTGCTGTCAGGGTGCACAGTT | + |
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Preference number: 6 (lower is better) Translates to: AVTGRKAAGRKR*GINLLLSGCTV Trigger: AACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGCTTTCCTGCCTGTGACAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
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| CDS CAA 90 bp | GTCACAGGCAGGAAAGCTGCAGGTCGAAAAAGATGGGGGATCAACTaGCTGCTGTCAGGGTGCACAGTTGAAAGACTCTTATTCCATGCG | + |
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Preference number: 6 (lower is better) Translates to: VTGRKAAGRKRWGIN*LLSGCTVERLLFHA Trigger: CGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGCTTTCCTGCCTGTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
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| CDS GCA 72 bp | TCCCTGCAGGTCGAAAAAGATGGGGGATCAACTTGCTaGTGTCAGGGTGCACAGTTGAAAGACTCTTATTCC | + |
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Preference number: 6 (lower is better) Translates to: SLQVEKDGGSTC*CQGAQLKDSYS Trigger: GGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| CDS CCA 72 bp | GAATTTCCATCAGCAATCCCTGCAGGTCGAAAAAGATaGGGGATCAACTTGCTGCTGTCAGGGTGCACAGTT | + |
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Preference number: 6 (lower is better) Translates to: EFPSAIPAGRKR*GINLLLSGCTV Trigger: AACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGGATTGCTGATGGAAATTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| CDS CAA 72 bp | GCAATCCCTGCAGGTCGAAAAAGATGGGGGATCAACTaGCTGCTGTCAGGGTGCACAGTTGAAAGACTCTTA | + |
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Preference number: 6 (lower is better) Translates to: AIPAGRKRWGIN*LLSGCTVERLL Trigger: TAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGGATTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| CDS CAA 90 bp | TTTCCATCAGCAATCCCTGCAGGTCGAAAAAGATGGGGGATCAACTaGCTGCTGTCAGGGTGCACAGTTGAAAGACTCTTATTCCATGCG | + |
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Preference number: 6 (lower is better) Translates to: FPSAIPAGRKRWGIN*LLSGCTVERLLFHA Trigger: CGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGGATTGCTGATGGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| CDS GCA 72 bp | CAATCCCTGCAGGTCGAAAAAGATGGGGGATCAACTTaGTGCTGTCAGGGTGCACAGTTGAAAGACTCTTAT | + |
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Preference number: 6 (lower is better) Translates to: QSLQVEKDGGST*CCQGAQLKDSY Trigger: ATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGGATTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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| CDS GCA 72 bp | TACCTGCAGGTCGAAAAAGATGGGGGATCAACTTGCTaGTGTCAGGGTGCACAGTTGAAAGACTCTTATTCC | + |
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Preference number: 6 (lower is better) Translates to: YLQVEKDGGSTC*CQGAQLKDSYS Trigger: GGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124921.2 |
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| CDS GCA 72 bp | AAGCTGCAGGTCGAAAAAGATGGGGGATCAACTTGCTaGTGTCAGGGTGCACAGTTGAAAGACTCTTATTCC | + |
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Preference number: 6 (lower is better) Translates to: KLQVEKDGGSTC*CQGAQLKDSYS Trigger: GGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
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| CDS GCA 72 bp | GGAAAGCTGCAGGTCGAAAAAGATGGGGGATCAACTTaGTGCTGTCAGGGTGCACAGTTGAAAGACTCTTAT | + |
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Preference number: 6 (lower is better) Translates to: GKLQVEKDGGST*CCQGAQLKDSY Trigger: ATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGCTTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
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| CDS CCA 72 bp | GCATCATCAACAGAAATACCTGCAGGTCGAAAAAGATaGGGGATCAACTTGCTGCTGTCAGGGTGCACAGTT | + |
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Preference number: 6 (lower is better) Translates to: ASSTEIPAGRKR*GINLLLSGCTV Trigger: AACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGTATTTCTGTTGATGATGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000124921.2 |
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| CDS CCA 72 bp | TTATTCCAGTGTCTGGCATCATCAACAGAAATACCATaGGTGCTGTCACAGGCAGGAAAGCTGCAGGTCGAA | + |
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Preference number: 6 (lower is better) Translates to: LFQCLASSTEIP*VLSQAGKLQVE Trigger: TTCGACCTGCAGCTTTCCTGCCTGTGACAGCACCCATGGTATTTCTGTTGATGATGCCAGACACTGGAATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
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| CDS CAA 72 bp | AGGAAAGCTGCAGGTCGAAAAAGATGGGGGATCAACTaGCTGCTGTCAGGGTGCACAGTTGAAAGACTCTTA | + |
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Preference number: 6 (lower is better) Translates to: RKAAGRKRWGIN*LLSGCTVERLL Trigger: TAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGCTTTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000135808.8 |
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| CDS CAA 90 bp | TCATCAACAGAAATACCTGCAGGTCGAAAAAGATGGGGGATCAACTaGCTGCTGTCAGGGTGCACAGTTGAAAGACTCTTATTCCATGCG | + |
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Preference number: 6 (lower is better) Translates to: SSTEIPAGRKRWGIN*LLSGCTVERLLFHA Trigger: CGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGTATTTCTGTTGATGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124921.2 |
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| CDS CAA 72 bp | GAAATACCTGCAGGTCGAAAAAGATGGGGGATCAACTaGCTGCTGTCAGGGTGCACAGTTGAAAGACTCTTA | + |
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Preference number: 6 (lower is better) Translates to: EIPAGRKRWGIN*LLSGCTVERLL Trigger: TAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGTATTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124921.2 |
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| CDS GCA 72 bp | CGAAAAAGATGGGGGATCAACTTGCTGCTGTCAGGGTaGACAGTTGAAAGACTCTTATTCCATGCGTCTTTA | + |
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Preference number: 6 (lower is better) Translates to: RKRWGINLLLSG*TVERLLFHASL Trigger: TAAAGACGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000080806.10 ENSMUST00000124921.2 ENSMUST00000135808.8 |
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| CDS GCA 72 bp | AAATACCTGCAGGTCGAAAAAGATGGGGGATCAACTTaGTGCTGTCAGGGTGCACAGTTGAAAGACTCTTAT | + |
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Preference number: 6 (lower is better) Translates to: KYLQVEKDGGST*CCQGAQLKDSY Trigger: ATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGGTATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000124921.2 |
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| CDS CCA 72 bp | ACTTCCCAGCCCCTCTCAAGTATTCTTTTAAAGCTATaGCTTCCAGAATTTCCATCAGCAATCCCTGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: TSQPLSSILLKL*LPEFPSAIPAG Trigger: ACCTGCAGGGATTGCTGATGGAAATTCTGGAAGCCATAGCTTTAAAAGAATACTTGAGAGGGGCTGGGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080806.10 |
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