RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SFXN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021474

Ensembl transcript IDs: ENSMUST00000021930.10

Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTCATCTGAGGCCTGAGTGTCACAGGGAGCCACTGTGTTTCAGGTaGCTTGGCAGGCAGCTCTACAGAAGATTCCAGCAGTGTGGGGTG +
Preference number: 1 (lower is better)
Translates to: AHLRPECHREPLCFR*LGRQLYRRFQQCGV
Trigger: CACCCCACACTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTGGCTCCCTGTGACACTCAGGCCTCAGATGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR TCA 90 bp CCGAGATCAGCTGGGTGGGCAGACCTCAAGGCCTTCAGCTTCTTCTaGAAGTGTCCTTTAAGCACCTGTGGACTCTGCCTTGAACGCCAG +
Preference number: 1 (lower is better)
Translates to: PRSAGWADLKAFSFF*KCPLSTCGLCLERQ
Trigger: CTGGCGTTCAAGGCAGAGTCCACAGGTGCTTAAAGGACACTTTCAGAAGAAGCTGAAGGCCTTGAGGTCTGCCCACCCAGCTGATCTCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CCA 90 bp TTCTTAGAGCTACACATGGACTGGGGCCAGGACTCCGAGATCAGCTaGGTGGGCAGACCTCAAGGCCTTCAGCTTCTTCTGAAAGTGTCC +
Preference number: 1 (lower is better)
Translates to: FLELHMDWGQDSEIS*VGRPQGLQLLLKVS
Trigger: GGACACTTTCAGAAGAAGCTGAAGGCCTTGAGGTCTGCCCACCCAGCTGATCTCGGAGTCCTGGCCCCAGTCCATGTGTAGCTCTAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CCA 90 bp CATCTTGCAACCAGCTACTTCATGTTCTTAGAGCTACACATGGACTaGGGCCAGGACTCCGAGATCAGCTGGGTGGGCAGACCTCAAGGC +
Preference number: 1 (lower is better)
Translates to: HLATSYFMFLELHMD*GQDSEISWVGRPQG
Trigger: GCCTTGAGGTCTGCCCACCCAGCTGATCTCGGAGTCCTGGCCCCAGTCCATGTGTAGCTCTAAGAACATGAAGTAGCTGGTTGCAAGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR GCA 90 bp ACCGGCAGCTTGACTCTTAACGAAGATCTTGTAGAGGCTTTTGAGTaGCCCAGCACACAAATCTCCTCACTGCTGTGGCTTAGGGAGGCT +
Preference number: 1 (lower is better)
Translates to: TGSLTLNEDLVEAFE*PSTQISSLLWLREA
Trigger: AGCCTCCCTAAGCCACAGCAGTGAGGAGATTTGTGTGCTGGGGCACTCAAAAGCCTCTACAAGATCTTCGTTAAGAGTCAAGCTGCCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR TCA 90 bp CTCCATGTCTACTGCAAGTTTCTCACTACCTGGGCTGACACTTGGTaGGTTGGTCCATCTTGCAACCAGCTACTTCATGTTCTTAGAGCT +
Preference number: 1 (lower is better)
Translates to: LHVYCKFLTTWADTW*VGPSCNQLLHVLRA
Trigger: AGCTCTAAGAACATGAAGTAGCTGGTTGCAAGATGGACCAACTCACCAAGTGTCAGCCCAGGTAGTGAGAAACTTGCAGTAGACATGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR-3UTR TCA 90 bp CACTGTGTTTCAGGTGGCTTGGCAGGCAGCTCTACAGAAGATTCCAGCAGTGTGTTCCCGATTCATTGCTaGGACCTCTGGGGAAGAGAA +
Preference number: 2 (lower is better)
Translates to: HCVSGGLAGSSTEDSSSVFPIHC*DLWGRE
Trigger: TTCTCTTCCCCAGAGGTCTCAGCAATGAATCGGGAA...CACACTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR-3UTR TCA 90 bp CACTGTGTTTCAGGTGGCTTGGCAGGCAGCTCTACAGAAGATTCCAGCAGTGTGTCTTGTAGAGGCTTTTaGGTGCCCCAGCACACAAAT +
Preference number: 2 (lower is better)
Translates to: HCVSGGLAGSSTEDSSSVSCRGF*VPQHTN
Trigger: ATTTGTGTGCTGGGGCACTCAAAAGCCTCTACAAGA...CACACTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CAA 90 bp ATGTCTACTGCAAGTTTCTCACTACCTGGGCTGACACTTGGTGAGTaGGTCCATCTTGCAACCAGCTACTTCATGTTCTTAGAGCTACAC +
Preference number: 2 (lower is better)
Translates to: MSTASFSLPGLTLGE*VHLATSYFMFLELH
Trigger: GTGTAGCTCTAAGAACATGAAGTAGCTGGTTGCAAGATGGACCAACTCACCAAGTGTCAGCCCAGGTAGTGAGAAACTTGCAGTAGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR-3UTR TCA 90 bp CACTGTGTTTCAGGTGGCTTGGCAGGCAGCTCTACAGAAGATTCCAGCAGTGTGTTCTTTGTATCTTCCTaGAAGCAGGGAGAATTCTAT +
Preference number: 2 (lower is better)
Translates to: HCVSGGLAGSSTEDSSSVFFVSS*KQGEFY
Trigger: ATAGAATTCTCCCTGCTTTCAGGAAGATACAAAGAA...CACACTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR-3UTR CCA 90 bp ACTTCAGATCCATCCATCCTTTCAGAGAGCGGAGAAGCACAGACACAAGGCACAGGTTCTACTTTAGACTaGATCATTGCCAAACTGGAA +
Preference number: 2 (lower is better)
Translates to: TSDPSILSESGEAQTQGTGSTLD*IIAKLE
Trigger: TTCCAGTTTGGCAATGATCCAGTCTAAAGTAGAACC...TGTGCCTTGTGTCTGTGCTTCTCCGCTCTCTGAAAGGATGGATGGATCTGAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CAA 90 bp ACTGAGTGTGTAACTGGAACATCTATGCTATGCCTACCAGTGCTTTaGAAACCTTACAGTGGGGGCTTTGGAAAAATGGCATCATTAAAA +
Preference number: 2 (lower is better)
Translates to: TECVTGTSMLCLPVL*KPYSGGFGKMASLK
Trigger: TTTTAATGATGCCATTTTTCCAAAGCCCCCACTGTAAGGTTTCAAAAGCACTGGTAGGCATAGCATAGATGTTCCAGTTACACACTCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CAA 90 bp CATAGCACAATGTTCACAGATGCTGGTCTAGTTCATGTGGTTTCTTaGTATCTTCCTGAAAGCAGGGAGAATTCTATAAGGATGGAAAAA +
Preference number: 2 (lower is better)
Translates to: HSTMFTDAGLVHVVS*YLPESRENSIRMEK
Trigger: TTTTTCCATCCTTATAGAATTCTCCCTGCTTTCAGGAAGATACAAAGAAACCACATGAACTAGACCAGCATCTGTGAACATTGTGCTATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR-3UTR GCA 90 bp TCAAACAAGGTGGAACATAGCACAATGTTCACAGATGCTGGTCTAGTTCATGTGTTTAGACTGGATCATTaGCAAACTGGAAACAAAGTT +
Preference number: 2 (lower is better)
Translates to: SNKVEHSTMFTDAGLVHVFRLDH*QTGNKV
Trigger: AACTTTGTTTCCAGTTTGGCAATGATCCAGTCTAAA...CACATGAACTAGACCAGCATCTGTGAACATTGTGCTATGTTCCACCTTGTTTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CCA 72 bp AGGCCTGAGTGTCACAGGGAGCCACTGTGTTTCAGGTaGCTTGGCAGGCAGCTCTACAGAAGATTCCAGCAG +
Preference number: 3 (lower is better)
Translates to: RPECHREPLCFR*LGRQLYRRFQQ
Trigger: CTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTGGCTCCCTGTGACACTCAGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR-3UTR CAA 90 bp CACTGTGTTTCAGGTGGCTTGGCAGGCAGCTCTACAGAAGATTCCAGCAGTGTGTGTCTTCCCGATTCATaGCTGAGACCTCTGGGGAAG +
Preference number: 3 (lower is better)
Translates to: HCVSGGLAGSSTEDSSSVCLPDS*LRPLGK
Trigger: CTTCCCCAGAGGTCTCAGCAATGAATCGGGAAGACA...CACACTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR TCA 72 bp GCTCTACAGAAGATTCCAGCAGTGTGGGGTGAGGGCTaGGAACTTCAGATCCATCCATCCTTTCAGAGAGCG +
Preference number: 3 (lower is better)
Translates to: ALQKIPAVWGEG*ELQIHPSFQRA
Trigger: CGCTCTCTGAAAGGATGGATGGATCTGAAGTTCTCAGCCCTCACCCCACACTGCTGGAATCTTCTGTAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR GCA 72 bp TTGACTCTTAACGAAGATCTTGTAGAGGCTTTTGAGTaGCCCAGCACACAAATCTCCTCACTGCTGTGGCTT +
Preference number: 3 (lower is better)
Translates to: LTLNEDLVEAFE*PSTQISSLLWL
Trigger: AAGCCACAGCAGTGAGGAGATTTGTGTGCTGGGGCACTCAAAAGCCTCTACAAGATCTTCGTTAAGAGTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR GCA 72 bp GTGTTTACTGAGTGTGTAACTGGAACATCTATGCTATaGCTACCAGTGCTTTTGAAACCTTACAGTGGGGGC +
Preference number: 3 (lower is better)
Translates to: VFTECVTGTSML*LPVLLKPYSGG
Trigger: GCCCCCACTGTAAGGTTTCAAAAGCACTGGTAGGCATAGCATAGATGTTCCAGTTACACACTCAGTAAACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR GCA 72 bp ACATCACGTGTAAAAATCACTATAGAGATGTTGGCATaGCACACTGTTTCACAGTTTTCAAACAAGGTGGAA +
Preference number: 3 (lower is better)
Translates to: TSRVKITIEMLA*HTVSQFSNKVE
Trigger: TTCCACCTTGTTTGAAAACTGTGAAACAGTGTGGCATGCCAACATCTCTATAGTGATTTTTACACGTGATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR TCA 90 bp GCACACAAATCTCCTCACTGCTGTGGCTTAGGGAGGCTCACAGATGGCTCCGGCCCAGCTCATTCACAGTaGGGGGAGCGTCACCGCTTC +
Preference number: 4 (lower is better)
Translates to: AHKSPHCCGLGRLTDGSGPAHSQ*GERHRF
Trigger: GAAGCGGTGACGCTCCCCTCACTGTGAATGAGCTGG...GCCGGAGCCATCTGTGAGCCTCCCTAAGCCACAGCAGTGAGGAGATTTGTGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR CCA 90 bp ATCTCCTCACTGCTGTGGCTTAGGGAGGCTCACAGATGGCTCCGGCCTCCAGCACCAATGAACGTGCTCTaGTCCCATCGAGGCTCCTTG +
Preference number: 4 (lower is better)
Translates to: ISSLLWLREAHRWLRPPAPMNVL*SHRGSL
Trigger: CAAGGAGCCTCGATGGGACCAGAGCACGTTCATTGG...TGCTGGAGGCCGGAGCCATCTGTGAGCCTCCCTAAGCCACAGCAGTGAGGAGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR CCA 90 bp GCACACAAATCTCCTCACTGCTGTGGCTTAGGGAGGCTCACAGATGGCTCCGGCTTGCCACAGCGCCAGTaGTTGCAGAAACATAAGCCG +
Preference number: 4 (lower is better)
Translates to: AHKSPHCCGLGRLTDGSGLPQRQ*LQKHKP
Trigger: CGGCTTATGTTTCTGCAACCACTGGCGCTGTGGCAA...GCCGGAGCCATCTGTGAGCCTCCCTAAGCCACAGCAGTGAGGAGATTTGTGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CAA 72 bp CTGAGTGTCACAGGGAGCCACTGTGTTTCAGGTGGCTaGGCAGGCAGCTCTACAGAAGATTCCAGCAGTGTG +
Preference number: 4 (lower is better)
Translates to: LSVTGSHCVSGG*AGSSTEDSSSV
Trigger: CACACTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTGGCTCCCTGTGACACTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR TCA 90 bp ATCTCCTCACTGCTGTGGCTTAGGGAGGCTCACAGATGGCTCCGGCCTCCAGCATGCCATTTTCATCAGTaGCAGGAATACCAACCTTCA +
Preference number: 4 (lower is better)
Translates to: ISSLLWLREAHRWLRPPACHFHQ*QEYQPS
Trigger: TGAAGGTTGGTATTCCTGTCACTGATGAAAATGGCA...TGCTGGAGGCCGGAGCCATCTGTGAGCCTCCCTAAGCCACAGCAGTGAGGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR GCA 90 bp TTTGAGTGCCCCAGCACACAAATCTCCTCACTGCTGTGGCTTAGGGAGGCTCACCTTTGGATGCTGGCTTaGAACTCATCCTCCAAGCTT +
Preference number: 4 (lower is better)
Translates to: FECPSTQISSLLWLREAHLWMLA*NSSSKL
Trigger: AAGCTTGGAGGATGAGTTGCAAGCCAGCATCCAAAG...GTGAGCCTCCCTAAGCCACAGCAGTGAGGAGATTTGTGTGCTGGGGCACTCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR TCA 90 bp CACTGTGTTTCAGGTGGCTTGGCAGGCAGCTCTACAGAAGATTCCAGCAGTGTGATGTTCATCGGGACCTaGGCTGACATTCTTCCTATC +
Preference number: 4 (lower is better)
Translates to: HCVSGGLAGSSTEDSSSVMFIGT*ADILPI
Trigger: GATAGGAAGAATGTCAGCTCAGGTCCCGATGAACAT...CACACTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR TCA 90 bp ACTTCAGATCCATCCATCCTTTCAGAGAGCGGAGAAGCACAGACACAAGGCACAGACATGGAACTCTTCTaGGGAAACAGAGCACAGCAC +
Preference number: 4 (lower is better)
Translates to: TSDPSILSESGEAQTQGTDMELF*GNRAQH
Trigger: GTGCTGTGCTCTGTTTCCTCAGAAGAGTTCCATGTC...TGTGCCTTGTGTCTGTGCTTCTCCGCTCTCTGAAAGGATGGATGGATCTGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR CCA 90 bp ACTTCAGATCCATCCATCCTTTCAGAGAGCGGAGAAGCACAGACACAAGGCACAGAGTCCTTTGGATGCTaGCTTGCAACTCATCCTCCA +
Preference number: 4 (lower is better)
Translates to: TSDPSILSESGEAQTQGTESFGC*LATHPP
Trigger: TGGAGGATGAGTTGCAAGCCAGCATCCAAAGGACTC...TGTGCCTTGTGTCTGTGCTTCTCCGCTCTCTGAAAGGATGGATGGATCTGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR CCA 90 bp CACTGTGTTTCAGGTGGCTTGGCAGGCAGCTCTACAGAAGATTCCAGCAGTGTGAGCTTGTCACAGACATaGAACTCTTCTGAGGAAACA +
Preference number: 4 (lower is better)
Translates to: HCVSGGLAGSSTEDSSSVSLSQT*NSSEET
Trigger: TGTTTCCTCAGAAGAGTTCCATGTCTGTGACAAGCT...CACACTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR GCA 90 bp CTGGTGGTTGCACAGGTAACCTTTCCAATGACTGATAACCAGTGTTTACTGAGTGACTGGTTTATCCACTaGCAGAAAAGCACAGCCGGT +
Preference number: 4 (lower is better)
Translates to: LVVAQVTFPMTDNQCLLSDWFIH*QKSTAG
Trigger: ACCGGCTGTGCTTTTCTGGCAGTGGATAAACCAGTC...ACTCAGTAAACACTGGTTATCAGTCATTGGAAAGGTTACCTGTGCAACCACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CAA 72 bp GCAAGTTTCTCACTACCTGGGCTGACACTTGGTGAGTaGGTCCATCTTGCAACCAGCTACTTCATGTTCTTA +
Preference number: 4 (lower is better)
Translates to: ASFSLPGLTLGE*VHLATSYFMFL
Trigger: TAAGAACATGAAGTAGCTGGTTGCAAGATGGACCAACTCACCAAGTGTCAGCCCAGGTAGTGAGAAACTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR TCA 90 bp TCAAACAAGGTGGAACATAGCACAATGTTCACAGATGCTGGTCTAGTTCATGTGCATCGGGACCTGAGCTaGCATTCTTCCTATCAGAGT +
Preference number: 4 (lower is better)
Translates to: SNKVEHSTMFTDAGLVHVHRDLS*HSSYQS
Trigger: ACTCTGATAGGAAGAATGTCAGCTCAGGTCCCGATG...CACATGAACTAGACCAGCATCTGTGAACATTGTGCTATGTTCCACCTTGTTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CAA 72 bp GTAACTGGAACATCTATGCTATGCCTACCAGTGCTTTaGAAACCTTACAGTGGGGGCTTTGGAAAAATGGCA +
Preference number: 4 (lower is better)
Translates to: VTGTSMLCLPVL*KPYSGGFGKMA
Trigger: TGCCATTTTTCCAAAGCCCCCACTGTAAGGTTTCAAAAGCACTGGTAGGCATAGCATAGATGTTCCAGTTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CAA 72 bp TATTTAGTCTTAGACCTTTCGTGTCTTCCCGATTCATaGCTGAGACCTCTGGGGAAGAGAAGTAGAAATGGA +
Preference number: 4 (lower is better)
Translates to: YLVLDLSCLPDS*LRPLGKRSRNG
Trigger: TCCATTTCTACTTCTCTTCCCCAGAGGTCTCAGCAATGAATCGGGAAGACACGAAAGGTCTAAGACTAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CAA 72 bp ATTTATAAAGATTGTCACTCAGGGTTAACAAGTGGCTaGCCTAGGACATGGAACAGCCACAGACTTCCAAAG +
Preference number: 4 (lower is better)
Translates to: IYKDCHSGLTSG*PRTWNSHRLPK
Trigger: CTTTGGAAGTCTGTGGCTGTTCCATGTCCTAGGCAAGCCACTTGTTAACCCTGAGTGACAATCTTTATAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR CCA 90 bp TCAAACAAGGTGGAACATAGCACAATGTTCACAGATGCTGGTCTAGTTCATGTGCCTTTGTCTCATCAGTaGGATGTTAATGCAGTTAGC +
Preference number: 4 (lower is better)
Translates to: SNKVEHSTMFTDAGLVHVPLSHQ*DVNAVS
Trigger: GCTAACTGCATTAACATCCCACTGATGAGACAAAGG...CACATGAACTAGACCAGCATCTGTGAACATTGTGCTATGTTCCACCTTGTTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CAA 72 bp ATGTTCACAGATGCTGGTCTAGTTCATGTGGTTTCTTaGTATCTTCCTGAAAGCAGGGAGAATTCTATAAGG +
Preference number: 4 (lower is better)
Translates to: MFTDAGLVHVVS*YLPESRENSIR
Trigger: CCTTATAGAATTCTCCCTGCTTTCAGGAAGATACAAAGAAACCACATGAACTAGACCAGCATCTGTGAACAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
3UTR CAA 72 bp CCGAATACATCACGTGTAAAAATCACTATAGAGATGTaGGCATGCCACACTGTTTCACAGTTTTCAAACAAG +
Preference number: 4 (lower is better)
Translates to: PNTSRVKITIEM*ACHTVSQFSNK
Trigger: CTTGTTTGAAAACTGTGAAACAGTGTGGCATGCCAACATCTCTATAGTGATTTTTACACGTGATGTATTCGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS GCA 90 bp ATGGCCATGCCCGGGGCTGCCATGAGGATCCTGGAGATGACCACCTaGGTGATGGCTTGCTTTGCTGCGTTGGTCGATTCTCCCAAGCGA +
Preference number: 5 (lower is better)
Translates to: MAMPGAAMRILEMTT*VMACFAALVDSPKR
Trigger: TCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTCCAGGATCCTCATGGCAGCCCCGGGCATGGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS GCA 90 bp GGGGCTGCCATGAGGATCCTGGAGATGACCACCTGCGTGATGGCTTaGTTTGCTGCGTTGGTCGATTCTCCCAAGCGAGTGCCATTTTCA +
Preference number: 5 (lower is better)
Translates to: GAAMRILEMTTCVMA*FAALVDSPKRVPFS
Trigger: TGAAAATGGCACTCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTCCAGGATCCTCATGGCAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR CAA 90 bp ATCTCCTCACTGCTGTGGCTTAGGGAGGCTCACAGATGGCTCCGGCCTCCAGCATCCTTGATGTTAATGTaGGGTGGCACTTCCCCAGAC +
Preference number: 5 (lower is better)
Translates to: ISSLLWLREAHRWLRPPASLMLM*GGTSPD
Trigger: GTCTGGGGAAGTGCCACCCAACATTAACATCAAGGA...TGCTGGAGGCCGGAGCCATCTGTGAGCCTCCCTAAGCCACAGCAGTGAGGAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS TCA 90 bp AGGCCGAGTCGTACGCGTACTTCGCTCTCCATAGCTCATTTTCCGTaGGGCCGGCAGGAACGATTCCTTGCCTGTAGTCATGCACCACTT +
Preference number: 5 (lower is better)
Translates to: RPSRTRTSLSIAHFP*GRQERFLACSHAPL
Trigger: AAGTGGTGCATGACTACAGGCAAGGAATCGTTCCTGCCGGCCTCACGGAAAATGAGCTATGGAGAGCGAAGTACGCGTACGACTCGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR CAA 90 bp TTTGAGTGCCCCAGCACACAAATCTCCTCACTGCTGTGGCTTAGGGAGGCTCACTCCCATCGAGGCTCCTaGATGTTAATGTTGGGTGGC +
Preference number: 5 (lower is better)
Translates to: FECPSTQISSLLWLREAHSHRGS*MLMLGG
Trigger: GCCACCCAACATTAACATCAAGGAGCCTCGATGGGA...GTGAGCCTCCCTAAGCCACAGCAGTGAGGAGATTTGTGTGCTGGGGCACTCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR CAA 90 bp CACTGTGTTTCAGGTGGCTTGGCAGGCAGCTCTACAGAAGATTCCAGCAGTGTGCCACAGCGCCAGTGGTaGCAGAAACATAAGCCGTTC +
Preference number: 5 (lower is better)
Translates to: HCVSGGLAGSSTEDSSSVPQRQW*QKHKPF
Trigger: GAACGGCTTATGTTTCTGCAACCACTGGCGCTGTGG...CACACTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS GCA 90 bp CATGAGGATCCTGGAGATGACCACCTGCGTGATGGCTTGCTTTGCTaGGTTGGTCGATTCTCCCAAGCGAGTGCCATTTTCATCAGTGAC +
Preference number: 5 (lower is better)
Translates to: HEDPGDDHLRDGLLC*VGRFSQASAIFISD
Trigger: GTCACTGATGAAAATGGCACTCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTCCAGGATCCTCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS GCA 90 bp TGCCATGAGGATCCTGGAGATGACCACCTGCGTGATGGCTTGCTTTaGTGCGTTGGTCGATTCTCCCAAGCGAGTGCCATTTTCATCAGT +
Preference number: 5 (lower is better)
Translates to: CHEDPGDDHLRDGLL*CVGRFSQASAIFIS
Trigger: ACTGATGAAAATGGCACTCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTCCAGGATCCTCATGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR CAA 90 bp CACTGTGTTTCAGGTGGCTTGGCAGGCAGCTCTACAGAAGATTCCAGCAGTGTGAACCTTCAGCTCCCTTaGTCTCATCAGTGGGATGTT +
Preference number: 5 (lower is better)
Translates to: HCVSGGLAGSSTEDSSSVNLQLP*SHQWDV
Trigger: AACATCCCACTGATGAGACAAAGGGAGCTGAAGGTT...CACACTGCTGGAATCTTCTGTAGAGCTGCCTGCCAAGCCACCTGAAACACAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS TCA 90 bp TTGCTGCGTTGGTCGATTCTCCCAAGCGAGTGCCATTTTCATCAGTaGCAGGAATACCAACCTTCAGCTCCCTTTGTCTCATCAGTGGGA +
Preference number: 5 (lower is better)
Translates to: LLRWSILPSECHFHQ*QEYQPSAPFVSSVG
Trigger: TCCCACTGATGAGACAAAGGGAGCTGAAGGTTGGTATTCCTGTCACTGATGAAAATGGCACTCGCTTGGGAGAATCGACCAACGCAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS-3UTR CAA 90 bp ACTTCAGATCCATCCATCCTTTCAGAGAGCGGAGAAGCACAGACACAAGGCACAACTCATCCTCCAAGCTaGTCACAGACATGGAACTCT +
Preference number: 5 (lower is better)
Translates to: TSDPSILSESGEAQTQGTTHPPS*SQTWNS
Trigger: AGAGTTCCATGTCTGTGACAAGCTTGGAGGATGAGT...TGTGCCTTGTGTCTGTGCTTCTCCGCTCTCTGAAAGGATGGATGGATCTGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 90 bp CGGGGCTGCCATGAGGATCCTGGAGATGACCACCTGCGTGATGGCTaGCTTTGCTGCGTTGGTCGATTCTCCCAAGCGAGTGCCATTTTC +
Preference number: 6 (lower is better)
Translates to: RGCHEDPGDDHLRDG*LCCVGRFSQASAIF
Trigger: GAAAATGGCACTCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTCCAGGATCCTCATGGCAGCCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 72 bp CGTCCTATCAGTGGGGAGACACGCTTGGTTAAGGCATaGAGTCCTAGGGCCGTTGCCACAGCGCCAGTGGTT +
Preference number: 6 (lower is better)
Translates to: RPISGETRLVKA*SPRAVATAPVV
Trigger: AACCACTGGCGCTGTGGCAACGGCCCTAGGACTCAATGCCTTAACCAAGCGTGTCTCCCCACTGATAGGACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS GCA 72 bp CCTGGAGATGACCACCTGCGTGATGGCTTGCTTTGCTaGGTTGGTCGATTCTCCCAAGCGAGTGCCATTTTC +
Preference number: 6 (lower is better)
Translates to: PGDDHLRDGLLC*VGRFSQASAIF
Trigger: GAAAATGGCACTCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS GCA 72 bp GATCCTGGAGATGACCACCTGCGTGATGGCTTGCTTTaGTGCGTTGGTCGATTCTCCCAAGCGAGTGCCATT +
Preference number: 6 (lower is better)
Translates to: DPGDDHLRDGLL*CVGRFSQASAI
Trigger: AATGGCACTCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTCCAGGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS GCA 72 bp ATGAGGATCCTGGAGATGACCACCTGCGTGATGGCTTaGTTTGCTGCGTTGGTCGATTCTCCCAAGCGAGTG +
Preference number: 6 (lower is better)
Translates to: MRILEMTTCVMA*FAALVDSPKRV
Trigger: CACTCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTCCAGGATCCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 72 bp CATGAGGATCCTGGAGATGACCACCTGCGTGATGGCTaGCTTTGCTGCGTTGGTCGATTCTCCCAAGCGAGT +
Preference number: 6 (lower is better)
Translates to: HEDPGDDHLRDG*LCCVGRFSQAS
Trigger: ACTCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTCCAGGATCCTCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS TCA 72 bp CGTACGCGTACTTCGCTCTCCATAGCTCATTTTCCGTaGGGCCGGCAGGAACGATTCCTTGCCTGTAGTCAT +
Preference number: 6 (lower is better)
Translates to: RTRTSLSIAHFP*GRQERFLACSH
Trigger: ATGACTACAGGCAAGGAATCGTTCCTGCCGGCCTCACGGAAAATGAGCTATGGAGAGCGAAGTACGCGTACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 90 bp AGGATCCTGGAGATGACCACCTGCGTGATGGCTTGCTTTGCTGCGTaGGTCGATTCTCCCAAGCGAGTGCCATTTTCATCAGTGACAGGA +
Preference number: 6 (lower is better)
Translates to: RILEMTTCVMACFAA*VDSPKRVPFSSVTG
Trigger: TCCTGTCACTGATGAAAATGGCACTCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTCCAGGATCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CCA 72 bp CTTCCTATCAGAGTCATCTTTTCACCGGTGTCAGGATaGAAGGCCGAGTCGTACGCGTACTTCGCTCTCCAT +
Preference number: 6 (lower is better)
Translates to: LPIRVIFSPVSG*KAESYAYFALH
Trigger: ATGGAGAGCGAAGTACGCGTACGACTCGGCCTTCCATCCTGACACCGGTGAAAAGATGACTCTGATAGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 72 bp GAGATGACCACCTGCGTGATGGCTTGCTTTGCTGCGTaGGTCGATTCTCCCAAGCGAGTGCCATTTTCATCA +
Preference number: 6 (lower is better)
Translates to: EMTTCVMACFAA*VDSPKRVPFSS
Trigger: TGATGAAAATGGCACTCGCTTGGGAGAATCGACCAACGCAGCAAAGCAAGCCATCACGCAGGTGGTCATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 90 bp CAGGATGAGTCCTTTGGATGCTGGCTTGCAACTCATCCTCCAAGCTaGTCACAGACATGGAACTCTTCTGAGGAAACAGAGCACAGCACA +
Preference number: 6 (lower is better)
Translates to: QDESFGCWLATHPPS*SQTWNSSEETEHST
Trigger: TGTGCTGTGCTCTGTTTCCTCAGAAGAGTTCCATGTCTGTGACAAGCTTGGAGGATGAGTTGCAAGCCAGCATCCAAAGGACTCATCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS TCA 72 bp AGGCCCTTGTTAAAGTACACACGCCGTATTTCAGGATaGGTCCTTTGGATGCTGGCTTGCAACTCATCCTCC +
Preference number: 6 (lower is better)
Translates to: RPLLKYTRRISG*VLWMLACNSSS
Trigger: GGAGGATGAGTTGCAAGCCAGCATCCAAAGGACTCATCCTGAAATACGGCGTGTGTACTTTAACAAGGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS GCA 72 bp AGTACACACGCCGTATTTCAGGATGAGTCCTTTGGATaGTGGCTTGCAACTCATCCTCCAAGCTTGTCACAG +
Preference number: 6 (lower is better)
Translates to: STHAVFQDESFG*WLATHPPSLSQ
Trigger: CTGTGACAAGCTTGGAGGATGAGTTGCAAGCCAGCATCCAAAGGACTCATCCTGAAATACGGCGTGTGTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CCA 72 bp ACACACGCCGTATTTCAGGATGAGTCCTTTGGATGCTaGCTTGCAACTCATCCTCCAAGCTTGTCACAGACA +
Preference number: 6 (lower is better)
Translates to: THAVFQDESFGC*LATHPPSLSQT
Trigger: TGTCTGTGACAAGCTTGGAGGATGAGTTGCAAGCCAGCATCCAAAGGACTCATCCTGAAATACGGCGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 72 bp ACGCCGTATTTCAGGATGAGTCCTTTGGATGCTGGCTaGCAACTCATCCTCCAAGCTTGTCACAGACATGGA +
Preference number: 6 (lower is better)
Translates to: TPYFRMSPLDAG*QLILQACHRHG
Trigger: TCCATGTCTGTGACAAGCTTGGAGGATGAGTTGCAAGCCAGCATCCAAAGGACTCATCCTGAAATACGGCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 90 bp CAGGCCCTTGTTAAAGTACACACGCCGTATTTCAGGATGAGTCCTTaGGATGCTGGCTTGCAACTCATCCTCCAAGCTTGTCACAGACAT +
Preference number: 6 (lower is better)
Translates to: QALVKVHTPYFRMSP*DAGLQLILQACHRH
Trigger: ATGTCTGTGACAAGCTTGGAGGATGAGTTGCAAGCCAGCATCCAAAGGACTCATCCTGAAATACGGCGTGTGTACTTTAACAAGGGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS TCA 72 bp AAAAGGATATTTCTGGGATCAGTAACCGTGAAGAAGTaGCTGGCTCGGCCAATGAACGTGCTCTGGTCCCAT +
Preference number: 6 (lower is better)
Translates to: KRIFLGSVTVKK*LARPMNVLWSH
Trigger: ATGGGACCAGAGCACGTTCATTGGCCGAGCCAGTCACTTCTTCACGGTTACTGATCCCAGAAATATCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS TCA 72 bp TGGTCGATTCTCCCAAGCGAGTGCCATTTTCATCAGTaGCAGGAATACCAACCTTCAGCTCCCTTTGTCTCA +
Preference number: 6 (lower is better)
Translates to: WSILPSECHFHQ*QEYQPSAPFVS
Trigger: TGAGACAAAGGGAGCTGAAGGTTGGTATTCCTGTCACTGATGAAAATGGCACTCGCTTGGGAGAATCGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CCA 72 bp GTGGCGAATACCAAACAAAAGCCAACCAACGTGACTTaGATTGGCGCACTCATCCACGGGAACCTCTTTAAA +
Preference number: 6 (lower is better)
Translates to: VANTKQKPTNVT*IGALIHGNLFK
Trigger: TTTAAAGAGGTTCCCGTGGATGAGTGCGCCAATCCAAGTCACGTTGGTTGGCTTTTGTTTGGTATTCGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 72 bp TCCTTTGGATGCTGGCTTGCAACTCATCCTCCAAGCTaGTCACAGACATGGAACTCTTCTGAGGAAACAGAG +
Preference number: 6 (lower is better)
Translates to: SFGCWLATHPPS*SQTWNSSEETE
Trigger: CTCTGTTTCCTCAGAAGAGTTCCATGTCTGTGACAAGCTTGGAGGATGAGTTGCAAGCCAGCATCCAAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 90 bp AGTGCCATTTTCATCAGTGACAGGAATACCAACCTTCAGCTCCCTTaGTCTCATCAGTGGGATGTTAATGCAGTTAGCAGCAGCTACAGC +
Preference number: 6 (lower is better)
Translates to: SAIFISDRNTNLQLP*SHQWDVNAVSSSYS
Trigger: GCTGTAGCTGCTGCTAACTGCATTAACATCCCACTGATGAGACAAAGGGAGCTGAAGGTTGGTATTCCTGTCACTGATGAAAATGGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 72 bp GTTAAAGTACACACGCCGTATTTCAGGATGAGTCCTTaGGATGCTGGCTTGCAACTCATCCTCCAAGCTTGT +
Preference number: 6 (lower is better)
Translates to: VKVHTPYFRMSP*DAGLQLILQAC
Trigger: ACAAGCTTGGAGGATGAGTTGCAAGCCAGCATCCAAAGGACTCATCCTGAAATACGGCGTGTGTACTTTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10
CDS CAA 72 bp TTCATCAGTGACAGGAATACCAACCTTCAGCTCCCTTaGTCTCATCAGTGGGATGTTAATGCAGTTAGCAGC +
Preference number: 6 (lower is better)
Translates to: FISDRNTNLQLP*SHQWDVNAVSS
Trigger: GCTGCTAACTGCATTAACATCCCACTGATGAGACAAAGGGAGCTGAAGGTTGGTATTCCTGTCACTGATGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021930.10