Pregenerated sensors for SFTPD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021795Ensembl transcript IDs: ENSMUST00000077136.5
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGGGCCCCCTGGAACCTaGAGCTCCCTGTGGACCGGC | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLGPPGT*SSLWTG Trigger: GCCGGTCCACAGGGAGCTCCAGGTTCCAGGGGGCCC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCACCTGGAGCTCCCTGTaGACCGGCAGGTCCGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLTWSSL*TGRSGR Trigger: CCTGCCGGACCTGCCGGTCCACAGGGAGCTCCAGGT...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCAGGGCCCTGCAACCCTaGGAGCCCCATAGGTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLRALQP*EPHRSW Trigger: CCAGGACCTATGGGGCTCTCAGGGTTGCAGGGCCCT...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCTCCGGCAGGTCCTGCTaGTCCAGCATTCCCTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLSGRSC*SSIPWG Trigger: GCCCCAGGGAATGCTGGAGCAGCAGGACCTGCCGGA...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCAGGTCCGGCAGGTCCTaGTGCTCCAGCATTCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLRSGRS*CSSIPW Trigger: CCAGGGAATGCTGGAGCAGCAGGACCTGCCGGACCT...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGGACCTGTAGGGCCCTaGAACCCTGAGAGCCCCATA | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLGPVGP*NPESPI Trigger: TATGGGGCTCTCAGGGTTGCAGGGCCCTACAGGTCC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCTTCCCTGGGGCTCCTTaGACACCAGGGGCACCTCTT | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLFPGAP*TPGAPL Trigger: AAGAGGTGCCCCTGGTGTGCAAGGAGCCCCAGGGAA...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCTGCTCCAGCATTCCCTaGGGCTCCTTGCACACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLCSSIP*GSLHTR Trigger: CCTGGTGTGCAAGGAGCCCCAGGGAATGCTGGAGCA...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCCTCAGTAGCAGAACGTaGGGAGGCCAGCTGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLLSSRT*GGQLSS Trigger: GGAGGACAGCTGGCCTCCCCACGTTCTGCTACTGAG...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCAGGTCCTGGCAAACCTaGATCACCCTTCTCACCCCG | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLRSWQT*ITLLTP Trigger: CGGGGTGAGAAGGGTGATCCAGGTTTGCCAGGACCT...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGGTCCTATGTTCCCCTaGTTCCCAGAGGGACCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLGPMFP*FPEGPS Trigger: AGAAGGTCCCTCTGGGAAGCAGGGGAACATAGGACC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGTCCTCCAGCCTGTTTaGACATCTCCTGGGCATCCT | + |
|
Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLVLQPV*TSPGHP Trigger: AGGATGCCCAGGAGATGTGCAAACAGGCTGGAGGAC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGAGCCCCATAGGTCCTaGCAAACCTGGATCACCCTT | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLEPHRS*QTWITL Trigger: AAGGGTGATCCAGGTTTGCCAGGACCTATGGGGCTC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGCCTGTGGAGCCTTTTaGCCCTGTAGATCCTTGCAT | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLACGAF*PCRSLH Trigger: ATGCAAGGATCTACAGGGGCAAAAGGCTCCACAGGC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCTTTAAGGCCTCCATCTaGTGCCTCAGAGCAGCACTG | + |
|
Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLFKASI*CLRAAL Trigger: CAGTGCTGCTCTGAGGCAGCAGATGGAGGCCTTAAA...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCTGGACCAGGAATACCTaGAAGTCCTGGAGGTCCACT | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLWTRNT*KSWRST Trigger: AGTGGACCTCCAGGACTTCCAGGTATTCCTGGTCCA...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR TCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCCAGAGTCTGCTGTCCTaGAGATCTTGTCTCCAACAC | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLQSLLS*RSCLQH Trigger: GTGTTGGAGACAAGATCTTCAGGACAGCAGACTCTG...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCACCTTCTTTCCCAGCTaGACCAGGAATACCTGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLTFFPS*TRNTWK Trigger: CTTCCAGGTATTCCTGGTCCAGCTGGGAAAGAAGGT...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGTTGTTGGGCTCCCCTaGAGCCCAATTAGAATAGAC | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLVVGLP*SPIRID Trigger: GTCTATTCTAATTGGGCTCCAGGGGAGCCCAACAAC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGCCATCAGGGAACAATaGAGCTTTCTGATAGTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLAIREQ*SFLIVG Trigger: TCCCACTATCAGAAAGCTGCATTGTTCCCTGATGGC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCTGGGCTGTGATGAGTTaGTGTATGGCAGCATTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLWAVMS*CMAAFS Trigger: TGAGAATGCTGCCATACAGCAACTCATCACAGCCCA...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCAAAGCAGCCTTGTTGTaGGCTGTGATGAGTTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLKAALL*AVMSCC Trigger: ACAGCAACTCATCACAGCCCACAACAAGGCTGCTTT...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCTTGGGTACTGATCTCTaGGAGAGGCTCTTCATTTCT | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLLGTDL*ERLFIS Trigger: AGAAATGAAGAGCCTCTCGCAGAGATCAGTACCCAA...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR GCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGCCTTATCATTCCATTaGCCATTGGTGAAGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLALSFH*PLVKIS Trigger: GGAGATCTTCACCAATGGGCAATGGAATGATAAGGC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CCA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCTGTTTGCACATCTCCTaGGCATCCTCAAAAGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLCLHIS*ASSKGF Trigger: AAAGCCTTTTGAGGATGCCCAGGAGATGTGCAAACA...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS GCA 90 bp | GCAGAGCCATTCTCTCCTTTGGGTCCAACTGGACCTGTAGGGCCCTaGAACCCTGAGAGCCCCATAGGTCCTGGCAAACCTGGATCACCC | + |
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Preference number: 5 (lower is better) Translates to: AEPFSPLGPTGPVGP*NPESPIGPGKPGSP Trigger: GGGTGATCCAGGTTTGCCAGGACCTATGGGGCTCTCAGGGTTGCAGGGCCCTACAGGTCCAGTTGGACCCAAAGGAGAGAATGGCTCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS TCA 90 bp | CCCGTCCATCACGACCAGGCAGGCCATTCTCTGTTGGGCTACACATaGCTAGGGTGCAGGTGTTGGGTACTGATCTCTGCGAGAGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: PVHHDQAGHSLLGYT*LGCRCWVLISARGS Trigger: AGAGCCTCTCGCAGAGATCAGTACCCAACACCTGCACCCTAGTCATGTGTAGCCCAACAGAGAATGGCCTGCCTGGTCGTGATGGACGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CCA 90 bp | GGCTGTGATGAGTTGCTGTATGGCAGCATTCTCAGTAGCAGAACGTaGGGAGGCCAGCTGTCCTCCAGCCTGTTTGCACATCTCCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: GCDELLYGSILSSRT*GGQLSSSLFAHLLG Trigger: GCCCAGGAGATGTGCAAACAGGCTGGAGGACAGCTGGCCTCCCCACGTTCTGCTACTGAGAATGCTGCCATACAGCAACTCATCACAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS GCA 90 bp | AAGGCAACCTCTAGACGCTGTAGTTTTCCTTTTAAGGCCTCCATCTaGTGCCTCAGAGCAGCACTGTCTGGAAGCCCGCTTTCACCTTTG | + |
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Preference number: 5 (lower is better) Translates to: KATSRRCSFPFKASI*CLRAALSGSPLSPL Trigger: CAAAGGTGAAAGCGGGCTTCCAGACAGTGCTGCTCTGAGGCAGCAGATGGAGGCCTTAAAAGGAAAACTACAGCGTCTAGAGGTTGCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS GCA 90 bp | GCAACCTCTAGACGCTGTAGTTTTCCTTTTAAGGCCTCCATCTGCTaGCTCAGAGCAGCACTGTCTGGAAGCCCGCTTTCACCTTTGATT | + |
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Preference number: 5 (lower is better) Translates to: ATSRRCSFPFKASIC*LRAALSGSPLSPLI Trigger: AATCAAAGGTGAAAGCGGGCTTCCAGACAGTGCTGCTCTGAGGCAGCAGATGGAGGCCTTAAAAGGAAAACTACAGCGTCTAGAGGTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CCA 90 bp | CCCTCTGTGCCCACATCTGTCATACTCAGGAAAGCAGCCTTGTTGTaGGCTGTGATGAGTTGCTGTATGGCAGCATTCTCAGTAGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: PSVPTSVILRKAALL*AVMSCCMAAFSVAE Trigger: TTCTGCTACTGAGAATGCTGCCATACAGCAACTCATCACAGCCCACAACAAGGCTGCTTTCCTGAGTATGACAGATGTGGGCACAGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS GCA 90 bp | TCACAGATAACAAGGCGCTGCTCTCCACAAGCCTTATCATTCCATTaGCCATTGGTGAAGATCTCCACACAGTTCTCTGCTCCACCATTG | + |
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Preference number: 5 (lower is better) Translates to: SQITRRCSPQALSFH*PLVKISTQFSAPPL Trigger: CAATGGTGGAGCAGAGAACTGTGTGGAGATCTTCACCAATGGGCAATGGAATGATAAGGCTTGTGGAGAGCAGCGCCTTGTTATCTGTGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCAGGACCTGGTTTGCCTaGAGGTCCTATGTTCCCCTG | + |
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Preference number: 5 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLRTWFA*RSYVPL Trigger: CAGGGGAACATAGGACCTCAAGGCAAACCAGGTCCT...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGCACCTACTTCTCCTTaGGGCCCAGCCTCTCCTTTA | + |
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Preference number: 5 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLAPTSP*GPASPL Trigger: TAAAGGAGAGGCTGGGCCCAAAGGAGAAGTAGGTGC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCTTCTCTGCTCCACCATaGTTGTTGGGCTCCCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLFSAPP*LLGSPG Trigger: TCCAGGGGAGCCCAACAACAATGGTGGAGCAGAGAA...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCAGCCCGCTTTCACCTTaGATTCCTCTGTCTCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLSPLSP*IPLSPG Trigger: TCCTGGAGACAGAGGAATCAAAGGTGAAAGCGGGCT...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCGTGGGCTGTGATGAGTaGCTGTATGGCAGCATTCTC | + |
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Preference number: 5 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLVGCDE*LYGSIL Trigger: GAGAATGCTGCCATACAGCAACTCATCACAGCCCAC...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCAGGAAAGCAGCCTTGTaGTGGGCTGTGATGAGTTGC | + |
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Preference number: 5 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLRKAAL*WAVMSC Trigger: GCAACTCATCACAGCCCACAACAAGGCTGCTTTCCT...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS-3UTR CAA 90 bp | TTATTAGGATGTTGGCAACATACAGGTCTGAGCCATAGTACACTGGTTAAACTCAGCCTTATCATTCCATaGCCCATTGGTGAAGATCTC | + |
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Preference number: 5 (lower is better) Translates to: LLGCWQHTGLSHSTLVKLSLIIP*PIGEDL Trigger: GAGATCTTCACCAATGGGCAATGGAATGATAAGGCT...GAGTTTAACCAGTGTACTATGGCTCAGACCTGTATGTTGCCAACATCCTAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CAA 90 bp | CGTTCTCCCTTTGGTCCAGGTTCGCCAGCAGAGCCATTCTCTCCTTaGGGTCCAACTGGACCTGTAGGGCCCTGCAACCCTGAGAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: RSPFGPGSPAEPFSP*GPTGPVGPCNPESP Trigger: GGGGCTCTCAGGGTTGCAGGGCCCTACAGGTCCAGTTGGACCCAAAGGAGAGAATGGCTCTGCTGGCGAACCTGGACCAAAGGGAGAACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS TCA 72 bp | TTTGGGTCCAACTGGACCTGTAGGGCCCTGCAACCCTaGGAGCCCCATAGGTCCTGGCAAACCTGGATCACC | + |
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Preference number: 6 (lower is better) Translates to: FGSNWTCRALQP*EPHRSWQTWIT Trigger: GGTGATCCAGGTTTGCCAGGACCTATGGGGCTCTCAGGGTTGCAGGGCCCTACAGGTCCAGTTGGACCCAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CAA 72 bp | TTTGGTCCAGGTTCGCCAGCAGAGCCATTCTCTCCTTaGGGTCCAACTGGACCTGTAGGGCCCTGCAACCCT | + |
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Preference number: 6 (lower is better) Translates to: FGPGSPAEPFSP*GPTGPVGPCNP Trigger: AGGGTTGCAGGGCCCTACAGGTCCAGTTGGACCCAAAGGAGAGAATGGCTCTGCTGGCGAACCTGGACCAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CAA 72 bp | TTTGGGCCCAGCCTCTCCTTTAGGACCTGGTTTGCCTaGAGGTCCTATGTTCCCCTGCTTCCCAGAGGGACC | + |
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Preference number: 6 (lower is better) Translates to: FGPSLSFRTWFA*RSYVPLLPRGT Trigger: GGTCCCTCTGGGAAGCAGGGGAACATAGGACCTCAAGGCAAACCAGGTCCTAAAGGAGAGGCTGGGCCCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS TCA 72 bp | CACGACCAGGCAGGCCATTCTCTGTTGGGCTACACATaGCTAGGGTGCAGGTGTTGGGTACTGATCTCTGCG | + |
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Preference number: 6 (lower is better) Translates to: HDQAGHSLLGYT*LGCRCWVLISA Trigger: CGCAGAGATCAGTACCCAACACCTGCACCCTAGTCATGTGTAGCCCAACAGAGAATGGCCTGCCTGGTCGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CCA 72 bp | GAGGCCAGCTGTCCTCCAGCCTGTTTGCACATCTCCTaGGCATCCTCAAAAGGCTTTTCAGAGTCTGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: EASCPPACLHIS*ASSKGFSESAV Trigger: GACAGCAGACTCTGAAAAGCCTTTTGAGGATGCCCAGGAGATGTGCAAACAGGCTGGAGGACAGCTGGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CCA 72 bp | ACAGTTCTCTGCTCCACCATTGTTGTTGGGCTCCCCTaGAGCCCAATTAGAATAGACCAGGGGCTCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: TVLCSTIVVGLP*SPIRIDQGLSC Trigger: ACAGGAGAGCCCCTGGTCTATTCTAATTGGGCTCCAGGGGAGCCCAACAACAATGGTGGAGCAGAGAACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS GCA 72 bp | AGACGCTGTAGTTTTCCTTTTAAGGCCTCCATCTGCTaGCTCAGAGCAGCACTGTCTGGAAGCCCGCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: RRCSFPFKASIC*LRAALSGSPLS Trigger: TGAAAGCGGGCTTCCAGACAGTGCTGCTCTGAGGCAGCAGATGGAGGCCTTAAAAGGAAAACTACAGCGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS GCA 72 bp | TCTAGACGCTGTAGTTTTCCTTTTAAGGCCTCCATCTaGTGCCTCAGAGCAGCACTGTCTGGAAGCCCGCTT | + |
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Preference number: 6 (lower is better) Translates to: SRRCSFPFKASI*CLRAALSGSPL Trigger: AAGCGGGCTTCCAGACAGTGCTGCTCTGAGGCAGCAGATGGAGGCCTTAAAAGGAAAACTACAGCGTCTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CAA 90 bp | ATCTGTCATACTCAGGAAAGCAGCCTTGTTGTGGGCTGTGATGAGTaGCTGTATGGCAGCATTCTCAGTAGCAGAACGTGGGGAGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: ICHTQESSLVVGCDE*LYGSILSSRTWGGQ Trigger: CTGGCCTCCCCACGTTCTGCTACTGAGAATGCTGCCATACAGCAACTCATCACAGCCCACAACAAGGCTGCTTTCCTGAGTATGACAGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CAA 90 bp | TTGCCCTCTGTGCCCACATCTGTCATACTCAGGAAAGCAGCCTTGTaGTGGGCTGTGATGAGTTGCTGTATGGCAGCATTCTCAGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: LPSVPTSVILRKAAL*WAVMSCCMAAFSVA Trigger: TGCTACTGAGAATGCTGCCATACAGCAACTCATCACAGCCCACAACAAGGCTGCTTTCCTGAGTATGACAGATGTGGGCACAGAGGGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS GCA 72 bp | CATCTCCTGGGCATCCTCAAAAGGCTTTTCAGAGTCTaGTGTCCTGAAGATCTTGTCTCCAACACTTCGGCC | + |
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Preference number: 6 (lower is better) Translates to: HLLGILKRLFRV*CPEDLVSNTSA Trigger: GGCCGAAGTGTTGGAGACAAGATCTTCAGGACAGCAGACTCTGAAAAGCCTTTTGAGGATGCCCAGGAGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CAA 72 bp | ACTCAGGAAAGCAGCCTTGTTGTGGGCTGTGATGAGTaGCTGTATGGCAGCATTCTCAGTAGCAGAACGTGG | + |
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Preference number: 6 (lower is better) Translates to: TQESSLVVGCDE*LYGSILSSRTW Trigger: CCACGTTCTGCTACTGAGAATGCTGCCATACAGCAACTCATCACAGCCCACAACAAGGCTGCTTTCCTGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CAA 90 bp | AACTTGCCCTCTGTGCCCACATCTGTCATACTCAGGAAAGCAGCCTaGTTGTGGGCTGTGATGAGTTGCTGTATGGCAGCATTCTCAGTA | + |
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Preference number: 6 (lower is better) Translates to: NLPSVPTSVILRKAA*LWAVMSCCMAAFSV Trigger: TACTGAGAATGCTGCCATACAGCAACTCATCACAGCCCACAACAAGGCTGCTTTCCTGAGTATGACAGATGTGGGCACAGAGGGCAAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS GCA 72 bp | ACAAGGCGCTGCTCTCCACAAGCCTTATCATTCCATTaGCCATTGGTGAAGATCTCCACACAGTTCTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: TRRCSPQALSFH*PLVKISTQFSA Trigger: AGCAGAGAACTGTGTGGAGATCTTCACCAATGGGCAATGGAATGATAAGGCTTGTGGAGAGCAGCGCCTTGT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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| CDS CAA 72 bp | TCAAAAGGCTTTTCAGAGTCTGCTGTCCTGAAGATCTaGTCTCCAACACTTCGGCCATCAGGGAACAATGCA | + |
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Preference number: 6 (lower is better) Translates to: SKGFSESAVLKI*SPTLRPSGNNA Trigger: TGCATTGTTCCCTGATGGCCGAAGTGTTGGAGACAAGATCTTCAGGACAGCAGACTCTGAAAAGCCTTTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077136.5 |
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