Pregenerated sensors for SFTPC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022097Ensembl transcript IDs: ENSMUST00000022692.5
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACAGACTTCCACCGGTTTCTGGGCAGGAGCAGCTTCCTGCTTGTCTaGCAAAGACCCTTTGCGGAGGGTCTTTCCTGTCCCGCTGCGGTT | + |
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Preference number: 1 (lower is better) Translates to: TDFHRFLGRSSFLLV*QRPFAEGLSCPAAV Trigger: AACCGCAGCGGGACAGGAAAGACCCTCCGCAAAGGGTCTTTGTCAGACAAGCAGGAAGCTGCTCCTGCCCAGAAACCGGTGGAAGTCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| 3UTR GCA 90 bp | GTTTCTGGGCAGGAGCAGCTTCCTGCTTGTCTGACAAAGACCCTTTaGGGAGGGTCTTTCCTGTCCCGCTGCGGTTTCTACCGACCCTGT | + |
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Preference number: 1 (lower is better) Translates to: VSGQEQLPACLTKTL*GGSFLSRCGFYRPC Trigger: ACAGGGTCGGTAGAAACCGCAGCGGGACAGGAAAGACCCTCCGCAAAGGGTCTTTGTCAGACAAGCAGGAAGCTGCTCCTGCCCAGAAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| 3UTR CAA 90 bp | CCTTTACAGACTTCCACCGGTTTCTGGGCAGGAGCAGCTTCCTGCTaGTCTGACAAAGACCCTTTGCGGAGGGTCTTTCCTGTCCCGCTG | + |
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Preference number: 2 (lower is better) Translates to: PLQTSTGFWAGAASC*SDKDPLRRVFPVPL Trigger: CAGCGGGACAGGAAAGACCCTCCGCAAAGGGTCTTTGTCAGACAAGCAGGAAGCTGCTCCTGCCCAGAAACCGGTGGAAGTCTGTAAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGCTTTATTCTTTTGTGATAGGATCCCCCTGGCCCGTAGGAGAGACACCTACTTCCACCGGTTTCTaGGCAGGAGCAGCTTCCTGC | + |
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Preference number: 2 (lower is better) Translates to: RLLYSFVIGSPWPVGETPTSTGF*AGAASC Trigger: GCAGGAAGCTGCTCCTGCCCAGAAACCGGTGGAAGT...AGGTGTCTCTCCTACGGGCCAGGGGGATCCTATCACAAAAGAATAAAGCAGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| 3UTR-3UTR GCA 90 bp | AGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGGGCAGGAGCAGCTTCCTGCTGACAAAGACCCTTTaGGGAGGGTCTTTCCTGTCC | + |
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Preference number: 2 (lower is better) Translates to: RHLSFTDFHRFLGRSSFLLTKTL*GGSFLS Trigger: GGACAGGAAAGACCCTCCGCAAAGGGTCTTTGTCAG...CAGGAAGCTGCTCCTGCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| 3UTR-3UTR CAA 90 bp | TCCCCCTGGCCCGTAGGAGAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGGAGCAGCTTCCTGCTaGTCTGACAAAGACCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: SPWPVGETPFLYRLPPVSGAASC*SDKDPL Trigger: CAAAGGGTCTTTGTCAGACAAGCAGGAAGCTGCTCC...AGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTCTCCTACGGGCCAGGGGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| 3UTR CCA 72 bp | AGAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTaGGCAGGAGCAGCTTCCTGCTTGTCTGACAAAGAC | + |
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Preference number: 3 (lower is better) Translates to: RDTFPLQTSTGF*AGAASCLSDKD Trigger: GTCTTTGTCAGACAAGCAGGAAGCTGCTCCTGCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR GCA 90 bp | TGGCCCGTAGGAGAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGGGCAGTCGGAACCAGTATCATaGCCTTCCTCCTGGCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: WPVGETPFLYRLPPVSGQSEPVS*PSSWPS Trigger: GCTGGGCCAGGAGGAAGGGCATGATACTGGTTCCGA...CTGCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTCTCCTACGGGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR CCA 90 bp | TGGCCCGTAGGAGAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGGGCAGTCATGCCCTTCCTCCTaGCCCAGCTTAGAGGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: WPVGETPFLYRLPPVSGQSCPSS*PSLEVG Trigger: ACCCACCTCTAAGCTGGGCCAGGAGGAAGGGCATGA...CTGCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTCTCCTACGGGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR TCA 90 bp | TGGCCCGTAGGAGAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGGGCAGTCATGTGGAGGCCCATaGGCAGAGCCCCTACAATCA | + |
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Preference number: 4 (lower is better) Translates to: WPVGETPFLYRLPPVSGQSCGGP*AEPLQS Trigger: TGATTGTAGGGGCTCTGCTCATGGGCCTCCACATGA...CTGCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTCTCCTACGGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR GCA 90 bp | GAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGGGCAGGAGCAGCTTCCTAGAAGGCGTTTGAGGTaGACGGGACAGCAGGGGATG | + |
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Preference number: 4 (lower is better) Translates to: ETPFLYRLPPVSGQEQLPRRRLR*TGQQGM Trigger: CATCCCCTGCTGTCCCGTGCACCTCAAACGCCTTCT...AGGAAGCTGCTCCTGCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| 3UTR CAA 72 bp | ACTTCCACCGGTTTCTGGGCAGGAGCAGCTTCCTGCTaGTCTGACAAAGACCCTTTGCGGAGGGTCTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: TSTGFWAGAASC*SDKDPLRRVFP Trigger: AGGAAAGACCCTCCGCAAAGGGTCTTTGTCAGACAAGCAGGAAGCTGCTCCTGCCCAGAAACCGGTGGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR GCA 90 bp | ACAAAGACCCTTTGCGGAGGGTCTTTCCTGTCCCGCTGCGGTTTCTACCGACCCAGTCATACACAACGATaGCAGTGGAGCCGATGGAAA | + |
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Preference number: 4 (lower is better) Translates to: TKTLCGGSFLSRCGFYRPSHTQR*QWSRWK Trigger: TTTCCATCGGCTCCACTGGCATCGTTGTGTATGACT...GGGTCGGTAGAAACCGCAGCGGGACAGGAAAGACCCTCCGCAAAGGGTCTTTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR CCA 90 bp | TGGCCCGTAGGAGAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGGGCAGGTAGCAGTAGGTTCCTaGAGCTGGCTTATAGGCCGT | + |
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Preference number: 4 (lower is better) Translates to: WPVGETPFLYRLPPVSGQVAVGS*SWLIGR Trigger: ACGGCCTATAAGCCAGCTCCAGGAACCTACTGCTAC...CTGCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTCTCCTACGGGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR CCA 90 bp | GGATCCCCCTGGCCCGTAGGAGAGACACCTTTCCTTTACAGACTTCCACCGGTTGTGGAGGGCTTGGCCTaGAAGTTCTGGAGTTTTCTA | + |
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Preference number: 4 (lower is better) Translates to: GSPWPVGETPFLYRLPPVVEGLA*KFWSFL Trigger: TAGAAAACTCCAGAACTTCCAGGCCAAGCCCTCCAC...AACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTCTCCTACGGGCCAGGGGGATCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR CCA 90 bp | GAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGGGCAGGAGCAGCTTCCTTGGGTGTGGAGGGCTTaGCCTGGAAGTTCTGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: ETPFLYRLPPVSGQEQLPWVWRA*PGSSGV Trigger: AACTCCAGAACTTCCAGGCCAAGCCCTCCACACCCA...AGGAAGCTGCTCCTGCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR TCA 90 bp | TCCCCCTGGCCCGTAGGAGAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTATCTCAGTATGTTTTTaGCTCATGTGGAGGCCCATG | + |
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Preference number: 4 (lower is better) Translates to: SPWPVGETPFLYRLPPVSISVCF*LMWRPM Trigger: CATGGGCCTCCACATGAGTCAAAAACATACTGAGAT...AGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTCTCCTACGGGCCAGGGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR CCA 90 bp | AGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGGGCAGGAGCAGCTTCCTGACTAGGGATGCTCTCTaGAGCCATCTTCATGATGTA | + |
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Preference number: 4 (lower is better) Translates to: RHLSFTDFHRFLGRSSFLTRDAL*SHLHDV Trigger: TACATCATGAAGATGGCTCCAGAGAGCATCCCTAGT...CAGGAAGCTGCTCCTGCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS GCA 90 bp | ACAACGAGGACCACCACCACAACCACGATGAGAAGGCGTTTGAGGTaGACGGGACAGCAGGGGATGCGGAACTGGCTCCTGGGACCTGCC | + |
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Preference number: 5 (lower is better) Translates to: TTRTTTTTTMRRRLR*TGQQGMRNWLLGPA Trigger: GGCAGGTCCCAGGAGCCAGTTCCGCATCCCCTGCTGTCCCGTGCACCTCAAACGCCTTCTCATCGTGGTTGTGGTGGTGGTCCTCGTTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS GCA 90 bp | GAGGTGCACGGGACAGCAGGGGATGCGGAACTGGCTCCTGGGACCTaGCGAGTAATCCGGTGGACTCTCCATCAGGACCTCTTTGCTACT | + |
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Preference number: 5 (lower is better) Translates to: EVHGTAGDAELAPGT*RVIRWTLHQDLFAT Trigger: AGTAGCAAAGAGGTCCTGATGGAGAGTCCACCGGATTACTCGGCAGGTCCCAGGAGCCAGTTCCGCATCCCCTGCTGTCCCGTGCACCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CCA 90 bp | CTCCCGGAAGAATCGGACTCGGAACCAGTATCATGCCCTTCCTCCTaGCCCAGCTTAGAGGTGGGTGTGGAGGGCTTGGCCTGGAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: LPEESDSEPVSCPSS*PSLEVGVEGLAWKF Trigger: GAACTTCCAGGCCAAGCCCTCCACACCCACCTCTAAGCTGGGCCAGGAGGAAGGGCATGATACTGGTTCCGAGTCCGATTCTTCCGGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR CAA 90 bp | TCCCCCTGGCCCGTAGGAGAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGTGGGTGTGGAGGGCTaGGCCTGGAAGTTCTGGAGT | + |
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Preference number: 5 (lower is better) Translates to: SPWPVGETPFLYRLPPVSVGVEG*AWKFWS Trigger: ACTCCAGAACTTCCAGGCCAAGCCCTCCACACCCAC...AGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTCTCCTACGGGCCAGGGGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS TCA 90 bp | AAGGTAGCGATGGTGTCTGCTCGCTCACTCGGGGCTAGGCGTTTCTaGGTTTCCGGTGCTCCGATGCTCATCTCAAGGACCATCTCAGTA | + |
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Preference number: 5 (lower is better) Translates to: KVAMVSARSLGARRF*VSGAPMLISRTISV Trigger: TACTGAGATGGTCCTTGAGATGAGCATCGGAGCACCGGAAACTCAGAAACGCCTAGCCCCGAGTGAGCGAGCAGACACCATCGCTACCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CCA 90 bp | AGGGATGCTCTCTGGAGCCATCTTCATGATGTAGCAGTAGGTTCCTaGAGCTGGCTTATAGGCCGTCAGGAGCCGCTGGTAGTCATACAC | + |
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Preference number: 5 (lower is better) Translates to: RDALWSHLHDVAVGS*SWLIGRQEPLVVIH Trigger: GTGTATGACTACCAGCGGCTCCTGACGGCCTATAAGCCAGCTCCAGGAACCTACTGCTACATCATGAAGATGGCTCCAGAGAGCATCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS TCA 90 bp | TCCGGTGCTCCGATGCTCATCTCAAGGACCATCTCAGTATGTTTTTaGCTCATGTGGAGGCCCATGAGCAGAGCCCCTACAATCACCACG | + |
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Preference number: 5 (lower is better) Translates to: SGAPMLISRTISVCF*LMWRPMSRAPTITT Trigger: CGTGGTGATTGTAGGGGCTCTGCTCATGGGCCTCCACATGAGTCAAAAACATACTGAGATGGTCCTTGAGATGAGCATCGGAGCACCGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CCA 90 bp | GCTCTCTGGAGCCATCTTCATGATGTAGCAGTAGGTTCCTGGAGCTaGCTTATAGGCCGTCAGGAGCCGCTGGTAGTCATACACAACGAT | + |
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Preference number: 5 (lower is better) Translates to: ALWSHLHDVAVGSWS*LIGRQEPLVVIHND Trigger: ATCGTTGTGTATGACTACCAGCGGCTCCTGACGGCCTATAAGCCAGCTCCAGGAACCTACTGCTACATCATGAAGATGGCTCCAGAGAGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS TCA 90 bp | TCTCAAGGACCATCTCAGTATGTTTTTGACTCATGTGGAGGCCCATaGGCAGAGCCCCTACAATCACCACGACAACGAGGACCACCACCA | + |
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Preference number: 5 (lower is better) Translates to: SQGPSQYVFDSCGGP*AEPLQSPRQRGPPP Trigger: TGGTGGTGGTCCTCGTTGTCGTGGTGATTGTAGGGGCTCTGCTCATGGGCCTCCACATGAGTCAAAAACATACTGAGATGGTCCTTGAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CCA 90 bp | GTTCTGGAGTTTTCTAGCGAAAGCCTCAAGACTAGGGATGCTCTCTaGAGCCATCTTCATGATGTAGCAGTAGGTTCCTGGAGCTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: VLEFSSESLKTRDAL*SHLHDVAVGSWSWL Trigger: AAGCCAGCTCCAGGAACCTACTGCTACATCATGAAGATGGCTCCAGAGAGCATCCCTAGTCTTGAGGCTTTCGCTAGAAAACTCCAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS-3UTR CAA 90 bp | GAGACACCTTTCCTTTACAGACTTCCACCGGTTTCTGGGCAGGAGCAGCTTCCTCATCTCAGTATGTTTTaGACTCATGTGGAGGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: ETPFLYRLPPVSGQEQLPHLSMF*THVEAH Trigger: ATGGGCCTCCACATGAGTCAAAAACATACTGAGATG...AGGAAGCTGCTCCTGCCCAGAAACCGGTGGAAGTCTGTAAAGGAAAGGTGTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS GCA 72 bp | ACCACCACCACAACCACGATGAGAAGGCGTTTGAGGTaGACGGGACAGCAGGGGATGCGGAACTGGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: TTTTTTMRRRLR*TGQQGMRNWLL Trigger: CAGGAGCCAGTTCCGCATCCCCTGCTGTCCCGTGCACCTCAAACGCCTTCTCATCGTGGTTGTGGTGGTGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CCA 72 bp | GAATCGGACTCGGAACCAGTATCATGCCCTTCCTCCTaGCCCAGCTTAGAGGTGGGTGTGGAGGGCTTGGCC | + |
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Preference number: 6 (lower is better) Translates to: ESDSEPVSCPSS*PSLEVGVEGLA Trigger: GGCCAAGCCCTCCACACCCACCTCTAAGCTGGGCCAGGAGGAAGGGCATGATACTGGTTCCGAGTCCGATTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CAA 72 bp | ACGAGGACCACCACCACAACCACGATGAGAAGGCGTTaGAGGTGCACGGGACAGCAGGGGATGCGGAACTGG | + |
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Preference number: 6 (lower is better) Translates to: TRTTTTTTMRRR*RCTGQQGMRNW Trigger: CCAGTTCCGCATCCCCTGCTGTCCCGTGCACCTCAAACGCCTTCTCATCGTGGTTGTGGTGGTGGTCCTCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS TCA 72 bp | ATGGTGTCTGCTCGCTCACTCGGGGCTAGGCGTTTCTaGGTTTCCGGTGCTCCGATGCTCATCTCAAGGACC | + |
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Preference number: 6 (lower is better) Translates to: MVSARSLGARRF*VSGAPMLISRT Trigger: GGTCCTTGAGATGAGCATCGGAGCACCGGAAACTCAGAAACGCCTAGCCCCGAGTGAGCGAGCAGACACCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS GCA 72 bp | TCTCTCCCGGAAGAATCGGACTCGGAACCAGTATCATaGCCTTCCTCCTGGCCCAGCTTAGAGGTGGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: SLPEESDSEPVS*PSSWPSLEVGV Trigger: CACACCCACCTCTAAGCTGGGCCAGGAGGAAGGGCATGATACTGGTTCCGAGTCCGATTCTTCCGGGAGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CCA 72 bp | GCGGAACTGGCTCCTGGGACCTGCCGAGTAATCCGGTaGACTCTCCATCAGGACCTCTTTGCTACTCATGTC | + |
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Preference number: 6 (lower is better) Translates to: AELAPGTCRVIR*TLHQDLFATHV Trigger: GACATGAGTAGCAAAGAGGTCCTGATGGAGAGTCCACCGGATTACTCGGCAGGTCCCAGGAGCCAGTTCCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CCA 72 bp | CTCTGGAGCCATCTTCATGATGTAGCAGTAGGTTCCTaGAGCTGGCTTATAGGCCGTCAGGAGCCGCTGGTA | + |
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Preference number: 6 (lower is better) Translates to: LWSHLHDVAVGS*SWLIGRQEPLV Trigger: TACCAGCGGCTCCTGACGGCCTATAAGCCAGCTCCAGGAACCTACTGCTACATCATGAAGATGGCTCCAGAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CCA 72 bp | AGCCATCTTCATGATGTAGCAGTAGGTTCCTGGAGCTaGCTTATAGGCCGTCAGGAGCCGCTGGTAGTCATA | + |
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Preference number: 6 (lower is better) Translates to: SHLHDVAVGSWS*LIGRQEPLVVI Trigger: TATGACTACCAGCGGCTCCTGACGGCCTATAAGCCAGCTCCAGGAACCTACTGCTACATCATGAAGATGGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CAA 90 bp | TTCCGGTGCTCCGATGCTCATCTCAAGGACCATCTCAGTATGTTTTaGACTCATGTGGAGGCCCATGAGCAGAGCCCCTACAATCACCAC | + |
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Preference number: 6 (lower is better) Translates to: FRCSDAHLKDHLSMF*THVEAHEQSPYNHH Trigger: GTGGTGATTGTAGGGGCTCTGCTCATGGGCCTCCACATGAGTCAAAAACATACTGAGATGGTCCTTGAGATGAGCATCGGAGCACCGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS TCA 72 bp | CCATCTCAGTATGTTTTTGACTCATGTGGAGGCCCATaGGCAGAGCCCCTACAATCACCACGACAACGAGGA | + |
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Preference number: 6 (lower is better) Translates to: PSQYVFDSCGGP*AEPLQSPRQRG Trigger: TCCTCGTTGTCGTGGTGATTGTAGGGGCTCTGCTCATGGGCCTCCACATGAGTCAAAAACATACTGAGATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS TCA 72 bp | CCGATGCTCATCTCAAGGACCATCTCAGTATGTTTTTaGCTCATGTGGAGGCCCATGAGCAGAGCCCCTACA | + |
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Preference number: 6 (lower is better) Translates to: PMLISRTISVCF*LMWRPMSRAPT Trigger: TGTAGGGGCTCTGCTCATGGGCCTCCACATGAGTCAAAAACATACTGAGATGGTCCTTGAGATGAGCATCGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CAA 72 bp | TCCGATGCTCATCTCAAGGACCATCTCAGTATGTTTTaGACTCATGTGGAGGCCCATGAGCAGAGCCCCTAC | + |
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Preference number: 6 (lower is better) Translates to: SDAHLKDHLSMF*THVEAHEQSPY Trigger: GTAGGGGCTCTGCTCATGGGCCTCCACATGAGTCAAAAACATACTGAGATGGTCCTTGAGATGAGCATCGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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| CDS CCA 72 bp | TTTTCTAGCGAAAGCCTCAAGACTAGGGATGCTCTCTaGAGCCATCTTCATGATGTAGCAGTAGGTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: FSSESLKTRDAL*SHLHDVAVGSW Trigger: CCAGGAACCTACTGCTACATCATGAAGATGGCTCCAGAGAGCATCCCTAGTCTTGAGGCTTTCGCTAGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022692.5 |
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