RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SFTPA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021789

Ensembl transcript IDs: ENSMUST00000022314.10, ENSMUST00000170719.2

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCCCCTCAAGGCATATAGTTACACCCCTATGGATACCTGGAGTGTaGGTCATGGTCGCATTCCACATAGTTGAGACTAGGGTGAATCCC +
Preference number: 1 (lower is better)
Translates to: APSRHIVTPLWIPGV*VMVAFHIVETRVNP
Trigger: GGGATTCACCCTAGTCTCAACTATGTGGAATGCGACCATGACCCACACTCCAGGTATCCATAGGGGTGTAACTATATGCCTTGAGGGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CCA 90 bp CTGGCTGTTCCTGGGCTTCCTTATGCCCAAGAAAAGATGGAAATGTaGGAAGAGTGTCAGGTGGGCAGAGCACAGGAGACTTCTAGAGAT +
Preference number: 1 (lower is better)
Translates to: LAVPGLPYAQEKMEM*EECQVGRAQETSRD
Trigger: ATCTCTAGAAGTCTCCTGTGCTCTGCCCACCTGACACTCTTCCCACATTTCCATCTTTTCTTGGGCATAAGGAAGCCCAGGAACAGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CCA 90 bp TTTTCCATCTGGCTGTTCCTGGGCTTCCTTATGCCCAAGAAAAGATaGAAATGTGGGAAGAGTGTCAGGTGGGCAGAGCACAGGAGACTT +
Preference number: 1 (lower is better)
Translates to: FSIWLFLGFLMPKKR*KCGKSVRWAEHRRL
Trigger: AAGTCTCCTGTGCTCTGCCCACCTGACACTCTTCCCACATTTCCATCTTTTCTTGGGCATAAGGAAGCCCAGGAACAGCCAGATGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CCA 90 bp AACATTCTTGCAAGTGTAAGTAGCAATTTTCCATCTGGCTGTTCCTaGGCTTCCTTATGCCCAAGAAAAGATGGAAATGTGGGAAGAGTG +
Preference number: 1 (lower is better)
Translates to: NILASVSSNFPSGCS*ASLCPRKDGNVGRV
Trigger: CACTCTTCCCACATTTCCATCTTTTCTTGGGCATAAGGAAGCCCAGGAACAGCCAGATGGAAAATTGCTACTTACACTTGCAAGAATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR TCA 90 bp TTTCTTGCTCATTTGATCTCAGCAAACCCTCAACAGCTTATACATTaGGTCCTCATCACACAGATAGAAAGGTCAGCTTGGCAGTTAACA +
Preference number: 1 (lower is better)
Translates to: FLAHLISANPQQLIH*VLITQIERSAWQLT
Trigger: TGTTAACTGCCAAGCTGACCTTTCTATCTGTGTGATGAGGACTCAATGTATAAGCTGTTGAGGGTTTGCTGAGATCAAATGAGCAAGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR TCA 90 bp AACAAATGTTATCTGTGCTTGTCAAAGTACTTGGTAGGCAGCATGTaGTCAGTCTTTGTTGTAGGAATTGTTATAGGTAATGCTTTGGGT +
Preference number: 1 (lower is better)
Translates to: NKCYLCLSKYLVGSM*SVFVVGIVIGNALG
Trigger: ACCCAAAGCATTACCTATAACAATTCCTACAACAAAGACTGATCACATGCTGCCTACCAAGTACTTTGACAAGCACAGATAACATTTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR-3UTR CCA 90 bp TGTGGGAAGAGTGTCAGGTGGGCAGAGCACAGGAGACTTCTAGAGATAAGATGTGTCTTACAGACCAGATaGATCATCAAGATAGAGGCT +
Preference number: 2 (lower is better)
Translates to: CGKSVRWAEHRRLLEIRCVLQTR*IIKIEA
Trigger: AGCCTCTATCTTGATGATCCATCTGGTCTGTAAGAC...ACATCTTATCTCTAGAAGTCTCCTGTGCTCTGCCCACCTGACACTCTTCCCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CAA 90 bp ATCACTCCTCAACATGGACCATATGGGCACAGGTCTGGAGTTACCTaGACCCCAGCTATCAGCACAAATGTCATGTTCTTCTTAATACCT +
Preference number: 2 (lower is better)
Translates to: ITPQHGPYGHRSGVT*TPAISTNVMFFLIP
Trigger: AGGTATTAAGAAGAACATGACATTTGTGCTGATAGCTGGGGTCAAGGTAACTCCAGACCTGTGCCCATATGGTCCATGTTGAGGAGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR-3UTR TCA 90 bp TGGCTGTTCCTGGGCTTCCTTATGCCCAAGAAAAGATGGAAATGTGGGAAGAGTGCCACAATTTATAAGTaGAGACTGGACAAAGTGAGG +
Preference number: 2 (lower is better)
Translates to: WLFLGFLMPKKRWKCGKSATIYK*RLDKVR
Trigger: CCTCACTTTGTCCAGTCTTCACTTATAAATTGTGGC...ACTCTTCCCACATTTCCATCTTTTCTTGGGCATAAGGAAGCCCAGGAACAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR-3UTR CCA 90 bp AAGAGTGTCAGGTGGGCAGAGCACAGGAGACTTCTAGAGATAAGATGTATAGTTATAGTTACACCCCTATaGATACCTGGAGTGTGGGTC +
Preference number: 2 (lower is better)
Translates to: KSVRWAEHRRLLEIRCIVIVTPL*IPGVWV
Trigger: GACCCACACTCCAGGTATCCATAGGGGTGTAACTAT...AACTATACATCTTATCTCTAGAAGTCTCCTGTGCTCTGCCCACCTGACACTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CAA 90 bp CCATTCCATGCATTTGAGAGTAGGATGATTCATAGAAACCTCACCTaGAATCCCACCTCCAGTCATGGCACAGTAAATAGCATCCCAGTA +
Preference number: 2 (lower is better)
Translates to: PFHAFESRMIHRNLT*NPTSSHGTVNSIPV
Trigger: TACTGGGATGCTATTTACTGTGCCATGACTGGAGGTGGGATTCAAGGTGAGGTTTCTATGAATCATCCTACTCTCAAATGCATGGAATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR-3UTR CCA 90 bp TGGCTGTTCCTGGGCTTCCTTATGCCCAAGAAAAGATGGAAATGTGGGAAGAGTAGACAGACTAACATCTaGGATGAAGCTGACTTTAAT +
Preference number: 2 (lower is better)
Translates to: WLFLGFLMPKKRWKCGKSRQTNI*DEADFN
Trigger: ATTAAAGTCAGCTTCATCCCAGATGTTAGTCTGTCT...ACTCTTCCCACATTTCCATCTTTTCTTGGGCATAAGGAAGCCCAGGAACAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CAA 90 bp TTTTCTTGCTCATTTGATCTCAGCAAACCCTCAACAGCTTATACATaGAGTCCTCATCACACAGATAGAAAGGTCAGCTTGGCAGTTAAC +
Preference number: 2 (lower is better)
Translates to: FSCSFDLSKPSTAYT*SPHHTDRKVSLAVN
Trigger: GTTAACTGCCAAGCTGACCTTTCTATCTGTGTGATGAGGACTCAATGTATAAGCTGTTGAGGGTTTGCTGAGATCAAATGAGCAAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR-3UTR GCA 90 bp AATAAGCTCAAAGAAAAGTTAGCTCAAAGCTTACCGGAAGACAGACTAACATCTAAGGTTGACAGTGGCTaGCTTGAGTTGAATGCTCAG +
Preference number: 2 (lower is better)
Translates to: NKLKEKLAQSLPEDRLTSKVDSG*LELNAQ
Trigger: CTGAGCATTCAACTCAAGGCAGCCACTGTCAACCTT...AGATGTTAGTCTGTCTTCCGGTAAGCTTTGAGCTAACTTTTCTTTGAGCTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CAA 90 bp ACAGCTTATACATTGAGTCCTCATCACACAGATAGAAAGGTCAGCTaGGCAGTTAACATTCTTGCAAGTGTAAGTAGCAATTTTCCATCT +
Preference number: 2 (lower is better)
Translates to: TAYTLSPHHTDRKVS*AVNILASVSSNFPS
Trigger: AGATGGAAAATTGCTACTTACACTTGCAAGAATGTTAACTGCCAAGCTGACCTTTCTATCTGTGTGATGAGGACTCAATGTATAAGCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR-3UTR CCA 90 bp AATAAGCTCAAAGAAAAGTTAGCTCAAAGCTTACCGGAAGACAGACTAACATCTTCTCTAAACTCAGGGTaGCTGCTATTAGGTCAAGAT +
Preference number: 2 (lower is better)
Translates to: NKLKEKLAQSLPEDRLTSSLNSG*LLLGQD
Trigger: ATCTTGACCTAATAGCAGCCACCCTGAGTTTAGAGA...AGATGTTAGTCTGTCTTCCGGTAAGCTTTGAGCTAACTTTTCTTTGAGCTTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CCA 72 bp TTCCCCAGTACTGTGCTGTGGCCCTACCTGGTTCTCTaGCTTCTTAGACACCGTGTTTGCCTTGAAAGCAGG +
Preference number: 3 (lower is better)
Translates to: FPSTVLWPYLVL*LLRHRVCLESR
Trigger: CCTGCTTTCAAGGCAAACACGGTGTCTAAGAAGCCAGAGAACCAGGTAGGGCCACAGCACAGTACTGGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CCA 72 bp CAACCAGGGAGGTTATGTTTCCCCAGTACTGTGCTGTaGCCCTACCTGGTTCTCTGGCTTCTTAGACACCGT +
Preference number: 3 (lower is better)
Translates to: QPGRLCFPSTVL*PYLVLWLLRHR
Trigger: ACGGTGTCTAAGAAGCCAGAGAACCAGGTAGGGCCACAGCACAGTACTGGGGAAACATAACCTCCCTGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CCA 72 bp TTGGCTGCCCCCTCAAGGCATATAGTTACACCCCTATaGATACCTGGAGTGTGGGTCATGGTCGCATTCCAC +
Preference number: 3 (lower is better)
Translates to: LAAPSRHIVTPL*IPGVWVMVAFH
Trigger: GTGGAATGCGACCATGACCCACACTCCAGGTATCCATAGGGGTGTAACTATATGCCTTGAGGGGGCAGCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR-3UTR CAA 90 bp AAGGCATATAGTTACACCCCTATGGATACCTGGAGTGTGGGTCATGGTCGCATTGCTGCAGAAGAAGGGTaGAAGGGTCCAGGAGCAGGC +
Preference number: 3 (lower is better)
Translates to: KAYSYTPMDTWSVGHGRIAAEEG*KGPGAG
Trigger: GCCTGCTCCTGGACCCTTCAACCCTTCTTCTGCAGC...AATGCGACCATGACCCACACTCCAGGTATCCATAGGGGTGTAACTATATGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR GCA 72 bp TATGCCAACCAGGGAGGTTATGTTTCCCCAGTACTGTaGTGTGGCCCTACCTGGTTCTCTGGCTTCTTAGAC +
Preference number: 3 (lower is better)
Translates to: YANQGGYVSPVL*CGPTWFSGFLD
Trigger: GTCTAAGAAGCCAGAGAACCAGGTAGGGCCACAGCACAGTACTGGGGAAACATAACCTCCCTGGTTGGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CCA 72 bp GGTTATGTTTCCCCAGTACTGTGCTGTGGCCCTACCTaGTTCTCTGGCTTCTTAGACACCGTGTTTGCCTTG +
Preference number: 3 (lower is better)
Translates to: GYVSPVLCCGPT*FSGFLDTVFAL
Trigger: CAAGGCAAACACGGTGTCTAAGAAGCCAGAGAACCAGGTAGGGCCACAGCACAGTACTGGGGAAACATAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CCA 72 bp CCTGGGCTTCCTTATGCCCAAGAAAAGATGGAAATGTaGGAAGAGTGTCAGGTGGGCAGAGCACAGGAGACT +
Preference number: 3 (lower is better)
Translates to: PGLPYAQEKMEM*EECQVGRAQET
Trigger: AGTCTCCTGTGCTCTGCCCACCTGACACTCTTCCCACATTTCCATCTTTTCTTGGGCATAAGGAAGCCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR-3UTR CAA 90 bp TGGCTGTTCCTGGGCTTCCTTATGCCCAAGAAAAGATGGAAATGTGGGAAGAGTGCGAAAAGAGAGCAGTaGGTATGCCTCAGTGATGTA +
Preference number: 3 (lower is better)
Translates to: WLFLGFLMPKKRWKCGKSAKREQ*VCLSDV
Trigger: TACATCACTGAGGCATACCAACTGCTCTCTTTTCGC...ACTCTTCCCACATTTCCATCTTTTCTTGGGCATAAGGAAGCCCAGGAACAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR-3UTR CAA 90 bp CCTCATCACACAGATAGAAAGGTCAGCTTGGCAGTTAACATTCTTGCAAGTGTAAGTGGCTGCCTTGAGTaGAATGCTCAGATGGGACTC +
Preference number: 3 (lower is better)
Translates to: PHHTDRKVSLAVNILASVSGCLE*NAQMGL
Trigger: GAGTCCCATCTGAGCATTCAACTCAAGGCAGCCACT...TACACTTGCAAGAATGTTAACTGCCAAGCTGACCTTTCTATCTGTGTGATGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CCA 72 bp GCAAGTGTAAGTAGCAATTTTCCATCTGGCTGTTCCTaGGCTTCCTTATGCCCAAGAAAAGATGGAAATGTG +
Preference number: 3 (lower is better)
Translates to: ASVSSNFPSGCS*ASLCPRKDGNV
Trigger: CACATTTCCATCTTTTCTTGGGCATAAGGAAGCCCAGGAACAGCCAGATGGAAAATTGCTACTTACACTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR TCA 72 bp CATTTGATCTCAGCAAACCCTCAACAGCTTATACATTaGGTCCTCATCACACAGATAGAAAGGTCAGCTTGG +
Preference number: 3 (lower is better)
Translates to: HLISANPQQLIH*VLITQIERSAW
Trigger: CCAAGCTGACCTTTCTATCTGTGTGATGAGGACTCAATGTATAAGCTGTTGAGGGTTTGCTGAGATCAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR-3UTR CAA 90 bp CCTCATCACACAGATAGAAAGGTCAGCTTGGCAGTTAACATTCTTGCAAGTGTAAAATGTTATCTGTGCTaGTCAAAGTACTTGGTAGGC +
Preference number: 3 (lower is better)
Translates to: PHHTDRKVSLAVNILASVKCYLC*SKYLVG
Trigger: GCCTACCAAGTACTTTGACAAGCACAGATAACATTT...TACACTTGCAAGAATGTTAACTGCCAAGCTGACCTTTCTATCTGTGTGATGAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR TCA 72 bp TATCTGTGCTTGTCAAAGTACTTGGTAGGCAGCATGTaGTCAGTCTTTGTTGTAGGAATTGTTATAGGTAAT +
Preference number: 3 (lower is better)
Translates to: YLCLSKYLVGSM*SVFVVGIVIGN
Trigger: ATTACCTATAACAATTCCTACAACAAAGACTGATCACATGCTGCCTACCAAGTACTTTGACAAGCACAGATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR CCA 90 bp TCTCTAAACTCAGGGTGGCTGCTATTAGGTCAAGATCCAGATCCAAGGAAGAGGCTCGGGGCAGCAATGTaGCCACCGGCTCTGGTACAC +
Preference number: 4 (lower is better)
Translates to: SLNSGWLLLGQDPDPRKRLGAAM*PPALVH
Trigger: GTGTACCAGAGCCGGTGGCCACATTGCTGCCCCGAG...CCTCTTCCTTGGATCTGGATCTTGACCTAATAGCAGCCACCCTGAGTTTAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR TCA 90 bp ACCATGAGCTGCAGAAGAAGGGTTGAAGGGTCCAGGAGCAGGCACTTTCTATGTCAGTCAAGAAGAGGGTaGAGGCCAAAGAGCCTAGTG +
Preference number: 4 (lower is better)
Translates to: TMSCRRRVEGSRSRHFLCQSRRG*RPKSLV
Trigger: CACTAGGCTCTTTGGCCTTCACCCTCTTCTTGACTG...ACATAGAAAGTGCCTGCTCCTGGACCCTTCAACCCTTCTTCTGCAGCTCATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR CCA 90 bp GCATATAGTTACACCCCTATGGATACCTGGAGTGTGGGTCATGGTCGCATTCCACTCATCCAGGTAAGCTaGAAACCCTGGAAGCCCCCT +
Preference number: 4 (lower is better)
Translates to: AYSYTPMDTWSVGHGRIPLIQVS*KPWKPP
Trigger: AGGGGGCTTCCAGGGTTTCCAGCTTACCTGGATGAG...TGGAATGCGACCATGACCCACACTCCAGGTATCCATAGGGGTGTAACTATATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR CCA 90 bp ATGACACCTAACAACAAATGTTATCTGTGCTTGTCAAAGTACTTGGTAGGCAGCCTTTGCCCCGACCCCTaGGCTCTCCTGGGTACCAGT +
Preference number: 4 (lower is better)
Translates to: MTPNNKCYLCLSKYLVGSLCPDP*ALLGTS
Trigger: ACTGGTACCCAGGAGAGCCCAGGGGTCGGGGCAAAG...GCTGCCTACCAAGTACTTTGACAAGCACAGATAACATTTGTTGTTAGGTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CAA 72 bp ACCTGGTTCTCTGGCTTCTTAGACACCGTGTTTGCCTaGAAAGCAGGTATACAGAGGACACTCAATGTGGCC +
Preference number: 4 (lower is better)
Translates to: TWFSGFLDTVFA*KAGIQRTLNVA
Trigger: GGCCACATTGAGTGTCCTCTGTATACCTGCTTTCAAGGCAAACACGGTGTCTAAGAAGCCAGAGAACCAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR TCA 90 bp TCTCTAAACTCAGGGTGGCTGCTATTAGGTCAAGATCCAGATCCAAGGAAGAGGGACTTTATCCCCCACTaGCAGCATGGATCCTTGCAA +
Preference number: 4 (lower is better)
Translates to: SLNSGWLLLGQDPDPRKRDFIPH*QHGSLQ
Trigger: TTGCAAGGATCCATGCTGTCAGTGGGGGATAAAGTC...CCTCTTCCTTGGATCTGGATCTTGACCTAATAGCAGCCACCCTGAGTTTAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR CCA 90 bp AAGAGTGTCAGGTGGGCAGAGCACAGGAGACTTCTAGAGATAAGATGTATAGTTGTAAGCTGGAAACCCTaGAAGCCCCCTTTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: KSVRWAEHRRLLEIRCIVVSWKP*KPPFSR
Trigger: CCTGGAGAAAGGGGGCTTCCAGGGTTTCCAGCTTAC...AACTATACATCTTATCTCTAGAAGTCTCCTGTGCTCTGCCCACCTGACACTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR CCA 90 bp AATAAGCTCAAAGAAAAGTTAGCTCAAAGCTTACCGGAAGACAGACTAACATCTAGGGCCCATGGGACCTaGAGGTCCAGGGTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: NKLKEKLAQSLPEDRLTSRAHGT*RSRVSF
Trigger: AAAGGAGACCCTGGACCTCCAGGTCCCATGGGCCCT...AGATGTTAGTCTGTCTTCCGGTAAGCTTTGAGCTAACTTTTCTTTGAGCTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR TCA 90 bp GTGTTTGCCTTGAAAGCAGGTATACAGAGGACACTCAATGTGGCCTACATCCATGGTATCAAAGTTGACTaGCTGCCCATTGGTGGAAAA +
Preference number: 4 (lower is better)
Translates to: VFALKAGIQRTLNVAYIHGIKVD*LPIGGK
Trigger: TTTTCCACCAATGGGCAGTCAGTCAACTTTGATACC...ATGGATGTAGGCCACATTGAGTGTCCTCTGTATACCTGCTTTCAAGGCAAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR CCA 90 bp AAGAGTGTCAGGTGGGCAGAGCACAGGAGACTTCTAGAGATAAGATGTATAGTTAAGTCTCCAGGAGTCTaGCCTTCAATCACACCTAAG +
Preference number: 4 (lower is better)
Translates to: KSVRWAEHRRLLEIRCIVKSPGV*PSITPK
Trigger: CTTAGGTGTGATTGAAGGCCAGACTCCTGGAGACTT...AACTATACATCTTATCTCTAGAAGTCTCCTGTGCTCTGCCCACCTGACACTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR TCA 90 bp AAAGATAATATCACTCCTCAACATGGACCATATGGGCACAGGTCTGGAGTTACCGCAGAATCTGATGTTTaGTCTCGTAGAGTGCAGTCT +
Preference number: 4 (lower is better)
Translates to: KDNITPQHGPYGHRSGVTAESDV*SRRVQS
Trigger: AGACTGCACTCTACGAGATCAAACATCAGATTCTGC...GGTAACTCCAGACCTGTGCCCATATGGTCCATGTTGAGGAGTGATATTATCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR GCA 90 bp ATGACACCTAACAACAAATGTTATCTGTGCTTGTCAAAGTACTTGGTAGGCAGCGACAGCATGGATCCTTaGAAGCTGAGGACTCCCATT +
Preference number: 4 (lower is better)
Translates to: MTPNNKCYLCLSKYLVGSDSMDP*KLRTPI
Trigger: AATGGGAGTCCTCAGCTTGCAAGGATCCATGCTGTC...GCTGCCTACCAAGTACTTTGACAAGCACAGATAACATTTGTTGTTAGGTGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CAA 72 bp GCATTTGAGAGTAGGATGATTCATAGAAACCTCACCTaGAATCCCACCTCCAGTCATGGCACAGTAAATAGC +
Preference number: 4 (lower is better)
Translates to: AFESRMIHRNLT*NPTSSHGTVNS
Trigger: GCTATTTACTGTGCCATGACTGGAGGTGGGATTCAAGGTGAGGTTTCTATGAATCATCCTACTCTCAAATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
3UTR CAA 72 bp TCATTTGATCTCAGCAAACCCTCAACAGCTTATACATaGAGTCCTCATCACACAGATAGAAAGGTCAGCTTG +
Preference number: 4 (lower is better)
Translates to: SFDLSKPSTAYT*SPHHTDRKVSL
Trigger: CAAGCTGACCTTTCTATCTGTGTGATGAGGACTCAATGTATAAGCTGTTGAGGGTTTGCTGAGATCAAATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR GCA 90 bp ATGACACCTAACAACAAATGTTATCTGTGCTTGTCAAAGTACTTGGTAGGCAGCTCAAAGTTGACTGACTaGCCATTGGTGGAAAAGACT +
Preference number: 4 (lower is better)
Translates to: MTPNNKCYLCLSKYLVGSSKLTD*PLVEKT
Trigger: AGTCTTTTCCACCAATGGGCAGTCAGTCAACTTTGA...GCTGCCTACCAAGTACTTTGACAAGCACAGATAACATTTGTTGTTAGGTGTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS CCA 90 bp CTTGCGATGGCCTCGTTCTCCTCAGGATTCCTCGGGGCAGCAATGTaGCCACCGGCTCTGGTACACATCTCTCTAATGGTATCAAAGTTG +
Preference number: 5 (lower is better)
Translates to: LAMASFSSGFLGAAM*PPALVHISLMVSKL
Trigger: CAACTTTGATACCATTAGAGAGATGTGTACCAGAGCCGGTGGCCACATTGCTGCCCCGAGGAATCCTGAGGAGAACGAGGCCATCGCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022314.10
ENSMUST00000170719.2
CDS-3UTR CAA 90 bp ATCACTCCTCAACATGGACCATATGGGCACAGGTCTGGAGTTACCTTGACCCCATCTCCAGGCTCTCCCTaGTCTCCATGTTCTCCAGGT +
Preference number: 5 (lower is better)
Translates to: ITPQHGPYGHRSGVTLTPSPGSP*SPCSPG
Trigger: ACCTGGAGAACATGGAGACAAGGGAGAGCCTGGAGA...TGGGGTCAAGGTAACTCCAGACCTGTGCCCATATGGTCCATGTTGAGGAGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR CAA 90 bp TCTCTAAACTCAGGGTGGCTGCTATTAGGTCAAGATCCAGATCCAAGGAAGAGGTCTACACATTTCTCTTaGCCCCGACCCCTGGGCTCT +
Preference number: 5 (lower is better)
Translates to: SLNSGWLLLGQDPDPRKRSTHFS*PRPLGS
Trigger: AGAGCCCAGGGGTCGGGGCAAAGAGAAATGTGTAGA...CCTCTTCCTTGGATCTGGATCTTGACCTAATAGCAGCCACCCTGAGTTTAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR CAA 90 bp ATCACTCCTCAACATGGACCATATGGGCACAGGTCTGGAGTTACCTTGACCCCACAAACTTCTGTCCCATaGCACTTGATGCCAGCAACA +
Preference number: 5 (lower is better)
Translates to: ITPQHGPYGHRSGVTLTPQTSVP*HLMPAT
Trigger: TGTTGCTGGCATCAAGTGCAATGGGACAGAAGTTTG...TGGGGTCAAGGTAACTCCAGACCTGTGCCCATATGGTCCATGTTGAGGAGTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS-3UTR CAA 90 bp CCTCATCACACAGATAGAAAGGTCAGCTTGGCAGTTAACATTCTTGCAAGTGTACTAATGGTATCAAAGTaGACTGACTGCCCATTGGTG +
Preference number: 5 (lower is better)
Translates to: PHHTDRKVSLAVNILASVLMVSK*TDCPLV
Trigger: CACCAATGGGCAGTCAGTCAACTTTGATACCATTAG...TACACTTGCAAGAATGTTAACTGCCAAGCTGACCTTTCTATCTGTGTGATGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170719.2
CDS CCA 72 bp GTAGAGTGCAGTCTGAAGCTCCTCATCCAGGTAAGCTaGAAACCCTGGAAGCCCCCTTTCTCCAGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: VECSLKLLIQVS*KPWKPPFSRLS
Trigger: GGAGAGCCTGGAGAAAGGGGGCTTCCAGGGTTTCCAGCTTACCTGGATGAGGAGCTTCAGACTGCACTCTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022314.10
ENSMUST00000170719.2
CDS CCA 72 bp GCCTCGTTCTCCTCAGGATTCCTCGGGGCAGCAATGTaGCCACCGGCTCTGGTACACATCTCTCTAATGGTA +
Preference number: 6 (lower is better)
Translates to: ASFSSGFLGAAM*PPALVHISLMV
Trigger: TACCATTAGAGAGATGTGTACCAGAGCCGGTGGCCACATTGCTGCCCCGAGGAATCCTGAGGAGAACGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022314.10
ENSMUST00000170719.2
CDS CAA 90 bp CCAGGGATCCCAGGGCTTCCGGCACAAACTTCTGTCCCATTGCACTaGATGCCAGCAACAACAGTCAAGAAGAGGGTGAAGGCCAAAGAG +
Preference number: 6 (lower is better)
Translates to: PGIPGLPAQTSVPLH*MPATTVKKRVKAKE
Trigger: CTCTTTGGCCTTCACCCTCTTCTTGACTGTTGTTGCTGGCATCAAGTGCAATGGGACAGAAGTTTGTGCCGGAAGCCCTGGGATCCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022314.10
ENSMUST00000170719.2
CDS CAA 72 bp GGGATCCCAGGGCTTCCGGCACAAACTTCTGTCCCATaGCACTTGATGCCAGCAACAACAGTCAAGAAGAGG +
Preference number: 6 (lower is better)
Translates to: GIPGLPAQTSVP*HLMPATTVKKR
Trigger: CCTCTTCTTGACTGTTGTTGCTGGCATCAAGTGCAATGGGACAGAAGTTTGTGCCGGAAGCCCTGGGATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022314.10
ENSMUST00000170719.2
CDS CAA 72 bp CCAGGGCTTCCGGCACAAACTTCTGTCCCATTGCACTaGATGCCAGCAACAACAGTCAAGAAGAGGGTGAAG +
Preference number: 6 (lower is better)
Translates to: PGLPAQTSVPLH*MPATTVKKRVK
Trigger: CTTCACCCTCTTCTTGACTGTTGTTGCTGGCATCAAGTGCAATGGGACAGAAGTTTGTGCCGGAAGCCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022314.10
ENSMUST00000170719.2
CDS CAA 72 bp CAGCATGGATCCTTGCAAGCTGAGGACTCCCATTGTTaGCAGAATCTGATGTTTGATCTCGTAGAGTGCAGT +
Preference number: 6 (lower is better)
Translates to: QHGSLQAEDSHC*QNLMFDLVECS
Trigger: ACTGCACTCTACGAGATCAAACATCAGATTCTGCAAACAATGGGAGTCCTCAGCTTGCAAGGATCCATGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022314.10
ENSMUST00000170719.2
CDS GCA 72 bp GTACACATCTCTCTAATGGTATCAAAGTTGACTGACTaGCCATTGGTGGAAAAGACTTTATCCCCCACTGAC +
Preference number: 6 (lower is better)
Translates to: VHISLMVSKLTD*PLVEKTLSPTD
Trigger: GTCAGTGGGGGATAAAGTCTTTTCCACCAATGGGCAGTCAGTCAACTTTGATACCATTAGAGAGATGTGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022314.10
ENSMUST00000170719.2