RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SFT2D3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044982

Ensembl transcript IDs: ENSMUST00000054984.8

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGGACTCCGCCGCGCAGTCCAGTTGGTGCCTTGTCCTTGTTGGCCTaGGTACAGTGGAGTGTCCCTAGCCTGGCTGGTTTCCTCTTCCTC +
Preference number: 1 (lower is better)
Translates to: RTPPRSPVGALSLLA*VQWSVPSLAGFLFL
Trigger: GAGGAAGAGGAAACCAGCCAGGCTAGGGACACTCCACTGTACCCAGGCCAACAAGGACAAGGCACCAACTGGACTGCGCGGCGGAGTCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR CCA 90 bp CCGCGCAGTCCAGTTGGTGCCTTGTCCTTGTTGGCCTGGGTACAGTaGAGTGTCCCTAGCCTGGCTGGTTTCCTCTTCCTCGAGACTGGG +
Preference number: 1 (lower is better)
Translates to: PRSPVGALSLLAWVQ*SVPSLAGFLFLETG
Trigger: CCCAGTCTCGAGGAAGAGGAAACCAGCCAGGCTAGGGACACTCCACTGTACCCAGGCCAACAAGGACAAGGCACCAACTGGACTGCGCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR CCA 90 bp CTGGGAAACAATTACTTTCACATTGTACAAGCCAGTGCTCAGATATaGGTCTTAACCTCAGCTGGACATGTATGCCTTATATATTATTAT +
Preference number: 1 (lower is better)
Translates to: LGNNYFHIVQASAQI*VLTSAGHVCLIYYY
Trigger: ATAATAATATATAAGGCATACATGTCCAGCTGAGGTTAAGACCCATATCTGAGCACTGGCTTGTACAATGTGAAAGTAATTGTTTCCCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR-3UTR CCA 90 bp AGGCAACATTGGAGCAGCCTGGGAAACAATTACTTTCACATTGTACAAGCCAGTGCCGCGCAGTCCAGTTaGTGCCTTGTCCTTGTTGGC +
Preference number: 2 (lower is better)
Translates to: RQHWSSLGNNYFHIVQASAAQSS*CLVLVG
Trigger: GCCAACAAGGACAAGGCACCAACTGGACTGCGCGGC...ACTGGCTTGTACAATGTGAAAGTAATTGTTTCCCAGGCTGCTCCAATGTTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR-3UTR CCA 90 bp CCTGTCATTTATAACTATAGTAACTGCAGATGTCAAAATGTCCTGTATCCCAGGTTGGCCTGGGTACAGTaGAGTGTCCCTAGCCTGGCT +
Preference number: 2 (lower is better)
Translates to: PVIYNYSNCRCQNVLYPRLAWVQ*SVPSLA
Trigger: AGCCAGGCTAGGGACACTCCACTGTACCCAGGCCAA...CCTGGGATACAGGACATTTTGACATCTGCAGTTACTATAGTTATAAATGACAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR-3UTR CCA 90 bp GCTGAACTGAAACCCAACATACCCCTGCATTTCTTTAACGTAGAATGTAGTTCTGTGCCTTGTCCTTGTTaGCCTGGGTACAGTGGAGTG +
Preference number: 2 (lower is better)
Translates to: AELKPNIPLHFFNVECSSVPCPC*PGYSGV
Trigger: CACTCCACTGTACCCAGGCCAACAAGGACAAGGCAC...AGAACTACATTCTACGTTAAAGAAATGCAGGGGTATGTTGGGTTTCAGTTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR-3UTR CCA 90 bp AGGCAACATTGGAGCAGCCTGGGAAACAATTACTTTCACATTGTACAAGCCAGTTGGGATGTGGCTTCTTaGGTACTTTTGATGTGCCAG +
Preference number: 2 (lower is better)
Translates to: RQHWSSLGNNYFHIVQASWDVAS*VLLMCQ
Trigger: CTGGCACATCAAAAGTACCCAAGAAGCCACATCCCA...ACTGGCTTGTACAATGTGAAAGTAATTGTTTCCCAGGCTGCTCCAATGTTGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR CAA 90 bp ATGTCCTGTATCCCAGGATTCCTTTTGCAGAAACCTTTGCAAATTTaGCCAATCATACTGGATATCTGGCTTTTTGGTCCAGAATATTGC +
Preference number: 2 (lower is better)
Translates to: MSCIPGFLLQKPLQI*PIILDIWLFGPEYC
Trigger: GCAATATTCTGGACCAAAAAGCCAGATATCCAGTATGATTGGCAAAATTTGCAAAGGTTTCTGCAAAAGGAATCCTGGGATACAGGACAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR-3UTR GCA 90 bp AAGTTGAATACCCTTTACTTTCTAAGGCATCCAGGCTCAATACTGAATAGTGTTTCCCAGGATTCCTTTTaGAGAAACCTTTGCAAATTT +
Preference number: 2 (lower is better)
Translates to: KLNTLYFLRHPGSILNSVSQDSF*RNLCKF
Trigger: AAATTTGCAAAGGTTTCTGCAAAAGGAATCCTGGGA...AACACTATTCAGTATTGAGCCTGGATGCCTTAGAAAGTAAAGGGTATTCAACTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR-3UTR CCA 90 bp CCTGTCATTTATAACTATAGTAACTGCAGATGTCAAAATGTCCTGTATCCCAGGATCATACTGGATATCTaGCTTTTTGGTCCAGAATAT +
Preference number: 2 (lower is better)
Translates to: PVIYNYSNCRCQNVLYPRIILDI*LFGPEY
Trigger: ATATTCTGGACCAAAAAGCCAGATATCCAGTATGAT...CCTGGGATACAGGACATTTTGACATCTGCAGTTACTATAGTTATAAATGACAGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR CCA 72 bp CTCCGCCGCGCAGTCCAGTTGGTGCCTTGTCCTTGTTaGCCTGGGTACAGTGGAGTGTCCCTAGCCTGGCTG +
Preference number: 3 (lower is better)
Translates to: LRRAVQLVPCPC*PGYSGVSLAWL
Trigger: CAGCCAGGCTAGGGACACTCCACTGTACCCAGGCCAACAAGGACAAGGCACCAACTGGACTGCGCGGCGGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR-3UTR CAA 90 bp CATTGGAGCAGCCTGGGAAACAATTACTTTCACATTGTACAAGCCAGTGCTCAGGGTGCCTTGTCCTTGTaGGCCTGGGTACAGTGGAGT +
Preference number: 3 (lower is better)
Translates to: HWSSLGNNYFHIVQASAQGALSL*AWVQWS
Trigger: ACTCCACTGTACCCAGGCCAACAAGGACAAGGCACC...CTGAGCACTGGCTTGTACAATGTGAAAGTAATTGTTTCCCAGGCTGCTCCAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR GCA 72 bp TTTCCTTTCCTGAGAGAGGTGGGTAGCTCTATTTACTaGCAGGAGAGCATAGCAAAAGGACTACTAAGGGCT +
Preference number: 3 (lower is better)
Translates to: FPFLREVGSSIY*QESIAKGLLRA
Trigger: AGCCCTTAGTAGTCCTTTTGCTATGCTCTCCTGGCAGTAAATAGAGCTACCCACCTCTCTCAGGAAAGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR TCA 72 bp AAAGGACTACTAAGGGCTAGTTGTCTTGGAAATCTGTaGAGTCGGGATATTGGCCAGTATAGGATCACATCT +
Preference number: 3 (lower is better)
Translates to: KGLLRASCLGNL*SRDIGQYRITS
Trigger: AGATGTGATCCTATACTGGCCAATATCCCGACTTCACAGATTTCCAAGACAACTAGCCCTTAGTAGTCCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR-3UTR CAA 90 bp AAGTTGAATACCCTTTACTTTCTAAGGCATCCAGGCTCAATACTGAATAGTGTTATCCCAGGATTCCTTTaGCAGAAACCTTTGCAAATT +
Preference number: 3 (lower is better)
Translates to: KLNTLYFLRHPGSILNSVIPGFL*QKPLQI
Trigger: AATTTGCAAAGGTTTCTGCAAAAGGAATCCTGGGAT...AACACTATTCAGTATTGAGCCTGGATGCCTTAGAAAGTAAAGGGTATTCAACTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR CAA 72 bp CCGCTTCAAGCGCACGGACTCCGCCGCGCAGTCCAGTaGGTGCCTTGTCCTTGTTGGCCTGGGTACAGTGGA +
Preference number: 4 (lower is better)
Translates to: PLQAHGLRRAVQ*VPCPCWPGYSG
Trigger: TCCACTGTACCCAGGCCAACAAGGACAAGGCACCAACTGGACTGCGCGGCGGAGTCCGTGCGCTTGAAGCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR CAA 72 bp ATCCCAGGATTCCTTTTGCAGAAACCTTTGCAAATTTaGCCAATCATACTGGATATCTGGCTTTTTGGTCCA +
Preference number: 4 (lower is better)
Translates to: IPGFLLQKPLQI*PIILDIWLFGP
Trigger: TGGACCAAAAAGCCAGATATCCAGTATGATTGGCAAAATTTGCAAAGGTTTCTGCAAAAGGAATCCTGGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
3UTR CAA 72 bp TTTTACCAAGCAGCAAATGTTAGGAATCATGAAAGCTaGGCAAACCTGTCATTTATAACTATAGTAACTGCA +
Preference number: 4 (lower is better)
Translates to: FYQAANVRNHES*ANLSFITIVTA
Trigger: TGCAGTTACTATAGTTATAAATGACAGGTTTGCCAAGCTTTCATGATTCCTAACATTTGCTGCTTGGTAAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 90 bp GCGCGGCGTAGAGCGTGGCGCCCAAGGCGGCGGCGTAGCCAAGCGTaGTCCGCGAGGGCGTCTCCTCGCCGCGTAGCAGGCGGCCGCACG +
Preference number: 5 (lower is better)
Translates to: ARRRAWRPRRRRSQA*SARASPRRVAGGRT
Trigger: CGTGCGGCCGCCTGCTACGCGGCGAGGAGACGCCCTCGCGGAGCACGCTTGGCTACGCCGCCGCCTTGGGCGCCACGCTCTACGCCGCGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS CCA 90 bp GCAGACACAGGCCGCCCGCCACCAGGCGCTGGCCTCGCGTCACGCTaGGGAGGCAGCGCAAGCCCGCGGGTGGCGGCTCGGCAGCGCTCT +
Preference number: 5 (lower is better)
Translates to: ADTGRPPPGAGLASR*GGSASPRVAARQRS
Trigger: AGAGCGCTGCCGAGCCGCCACCCGCGGGCTTGCGCTGCCTCCCCAGCGTGACGCGAGGCCAGCGCCTGGTGGCGGGCGGCCTGTGTCTGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS CCA 90 bp CAGAGCGCGGCCAGCAGCAGACACAGGCCGCCCGCCACCAGGCGCTaGCCTCGCGTCACGCTGGGGAGGCAGCGCAAGCCCGCGGGTGGC +
Preference number: 5 (lower is better)
Translates to: QSAASSRHRPPATRR*PRVTLGRQRKPAGG
Trigger: GCCACCCGCGGGCTTGCGCTGCCTCCCCAGCGTGACGCGAGGCCAGCGCCTGGTGGCGGGCGGCCTGTGTCTGCTGCTGGCCGCGCTCTG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 90 bp TCGCCCACGCCAGCACCGAGCCCAGCGACCAGAGGAGCGCGAACTTaGGCGCGCGCAGCAGCAGCACCGGCGCGTAGAGCGCCGCCAGGC +
Preference number: 5 (lower is better)
Translates to: SPTPAPSPATRGART*ARAAAAPARRAPPG
Trigger: GCCTGGCGGCGCTCTACGCGCCGGTGCTGCTGCTGCGCGCGCGCAAGTTCGCGCTCCTCTGGTCGCTGGGCTCGGTGCTGGCGTGGGCGA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 90 bp GCGCGGCTACCTGTGCGCAAGCGCCGAGCGCCGTCAGCACCGTACTaGGCAGGACCAGCGCGGCGTAGAGCGTGGCGCCCAAGGCGGCGG +
Preference number: 5 (lower is better)
Translates to: ARLPVRKRRAPSAPY*AGPARRRAWRPRRR
Trigger: CCGCCGCCTTGGGCGCCACGCTCTACGCCGCGCTGGTCCTGCGCAGTACGGTGCTGACGGCGCTCGGCGCTTGCGCACAGGTAGCCGCGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS CCA 90 bp GCGCTGGCCTCGCGTCACGCTGGGGAGGCAGCGCAAGCCCGCGGGTaGCGGCTCGGCAGCGCTCTGTGCCCACGGCCATCGCAGAACCCT +
Preference number: 5 (lower is better)
Translates to: ALASRHAGEAAQARG*RLGSALCPRPSQNP
Trigger: AGGGTTCTGCGATGGCCGTGGGCACAGAGCGCTGCCGAGCCGCCACCCGCGGGCTTGCGCTGCCTCCCCAGCGTGACGCGAGGCCAGCGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS CCA 90 bp GCGCCGTCAGCACCGTACTGCGCAGGACCAGCGCGGCGTAGAGCGTaGCGCCCAAGGCGGCGGCGTAGCCAAGCGTGCTCCGCGAGGGCG +
Preference number: 5 (lower is better)
Translates to: APSAPYCAGPARRRA*RPRRRRSQACSARA
Trigger: CGCCCTCGCGGAGCACGCTTGGCTACGCCGCCGCCTTGGGCGCCACGCTCTACGCCGCGCTGGTCCTGCGCAGTACGGTGCTGACGGCGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 90 bp GCGGCTCGGCAGCGCTCTGTGCCCACGGCCATCGCAGAACCCTGCTaGCTAGCCAGGCCCCGGCCTCAGGCTCCTCTGCTGCCTTCGCGC +
Preference number: 5 (lower is better)
Translates to: AARQRSVPTAIAEPC*LARPRPQAPLLPSR
Trigger: GCGCGAAGGCAGCAGAGGAGCCTGAGGCCGGGGCCTGGCTAGGCAGCAGGGTTCTGCGATGGCCGTGGGCACAGAGCGCTGCCGAGCCGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 90 bp CCCGGCCTCAGGCTCCTCTGCTGCCTTCGCGCCGAGCAGCGGCTCTaGGGCCGCCGGCCTGCTCGCTTTCCCCTGCTTCAGGTAGTCTTG +
Preference number: 5 (lower is better)
Translates to: PGLRLLCCLRAEQRL*GRRPARFPLLQVVL
Trigger: CAAGACTACCTGAAGCAGGGGAAAGCGAGCAGGCCGGCGGCCGCAGAGCCGCTGCTCGGCGCGAAGGCAGCAGAGGAGCCTGAGGCCGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 90 bp CCTCTGCTGCCTTCGCGCCGAGCAGCGGCTCTGCGGCCGCCGGCCTaGTCGCTTTCCCCTGCTTCAGGTAGTCTTGCAGCTGGCGGTGGA +
Preference number: 5 (lower is better)
Translates to: PLLPSRRAAALRPPA*SLSPASGSLAAGGG
Trigger: TCCACCGCCAGCTGCAAGACTACCTGAAGCAGGGGAAAGCGAGCAGGCCGGCGGCCGCAGAGCCGCTGCTCGGCGCGAAGGCAGCAGAGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 90 bp CCAGGGCAGGAGCCCGATCAACGCGTAGAGCAGCGCGGCTACCTGTaGGCAAGCGCCGAGCGCCGTCAGCACCGTACTGCGCAGGACCAG +
Preference number: 5 (lower is better)
Translates to: PGQEPDQRVEQRGYL*ASAERRQHRTAQDQ
Trigger: CTGGTCCTGCGCAGTACGGTGCTGACGGCGCTCGGCGCTTGCGCACAGGTAGCCGCGCTGCTCTACGCGTTGATCGGGCTCCTGCCCTGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS-3UTR CAA 90 bp CCACTGGTGCCACGTTTGAAGTTGAATACCCTTTACTTTCTAAGGCATCCAGGCCAGAGGAGCGCGAACTaGCGCGCGCGCAGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: PLVPRLKLNTLYFLRHPGQRSAN*RARSSS
Trigger: GCTGCTGCTGCGCGCGCGCAAGTTCGCGCTCCTCTG...GCCTGGATGCCTTAGAAAGTAAAGGGTATTCAACTTCAAACGTGGCACCAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS-3UTR CAA 90 bp CCTGTCATTTATAACTATAGTAACTGCAGATGTCAAAATGTCCTGTATCCCAGGCTGCTTCAGGTAGTCTaGCAGCTGGCGGTGGAGATC +
Preference number: 5 (lower is better)
Translates to: PVIYNYSNCRCQNVLYPRLLQVV*QLAVEI
Trigger: GATCTCCACCGCCAGCTGCAAGACTACCTGAAGCAG...CCTGGGATACAGGACATTTTGACATCTGCAGTTACTATAGTTATAAATGACAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS CCA 72 bp TCGCGTCACGCTGGGGAGGCAGCGCAAGCCCGCGGGTaGCGGCTCGGCAGCGCTCTGTGCCCACGGCCATCG +
Preference number: 6 (lower is better)
Translates to: SRHAGEAAQARG*RLGSALCPRPS
Trigger: CGATGGCCGTGGGCACAGAGCGCTGCCGAGCCGCCACCCGCGGGCTTGCGCTGCCTCCCCAGCGTGACGCGA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS CCA 72 bp GCCAGCAGCAGACACAGGCCGCCCGCCACCAGGCGCTaGCCTCGCGTCACGCTGGGGAGGCAGCGCAAGCCC +
Preference number: 6 (lower is better)
Translates to: ASSRHRPPATRR*PRVTLGRQRKP
Trigger: GGGCTTGCGCTGCCTCCCCAGCGTGACGCGAGGCCAGCGCCTGGTGGCGGGCGGCCTGTGTCTGCTGCTGGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 72 bp AGAGCGTGGCGCCCAAGGCGGCGGCGTAGCCAAGCGTaGTCCGCGAGGGCGTCTCCTCGCCGCGTAGCAGGC +
Preference number: 6 (lower is better)
Translates to: RAWRPRRRRSQA*SARASPRRVAG
Trigger: GCCTGCTACGCGGCGAGGAGACGCCCTCGCGGAGCACGCTTGGCTACGCCGCCGCCTTGGGCGCCACGCTCT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 72 bp CCAGCACCGAGCCCAGCGACCAGAGGAGCGCGAACTTaGGCGCGCGCAGCAGCAGCACCGGCGCGTAGAGCG +
Preference number: 6 (lower is better)
Translates to: PAPSPATRGART*ARAAAAPARRA
Trigger: CGCTCTACGCGCCGGTGCTGCTGCTGCGCGCGCGCAAGTTCGCGCTCCTCTGGTCGCTGGGCTCGGTGCTGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 72 bp CCTGTGCGCAAGCGCCGAGCGCCGTCAGCACCGTACTaGGCAGGACCAGCGCGGCGTAGAGCGTGGCGCCCA +
Preference number: 6 (lower is better)
Translates to: PVRKRRAPSAPY*AGPARRRAWRP
Trigger: TGGGCGCCACGCTCTACGCCGCGCTGGTCCTGCGCAGTACGGTGCTGACGGCGCTCGGCGCTTGCGCACAGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 72 bp AGGCTCCTCTGCTGCCTTCGCGCCGAGCAGCGGCTCTaGGGCCGCCGGCCTGCTCGCTTTCCCCTGCTTCAG +
Preference number: 6 (lower is better)
Translates to: RLLCCLRAEQRL*GRRPARFPLLQ
Trigger: CTGAAGCAGGGGAAAGCGAGCAGGCCGGCGGCCGCAGAGCCGCTGCTCGGCGCGAAGGCAGCAGAGGAGCCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 72 bp CCTTCGCGCCGAGCAGCGGCTCTGCGGCCGCCGGCCTaGTCGCTTTCCCCTGCTTCAGGTAGTCTTGCAGCT +
Preference number: 6 (lower is better)
Translates to: PSRRAAALRPPA*SLSPASGSLAA
Trigger: AGCTGCAAGACTACCTGAAGCAGGGGAAAGCGAGCAGGCCGGCGGCCGCAGAGCCGCTGCTCGGCGCGAAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8
CDS GCA 72 bp GAGCCCGATCAACGCGTAGAGCAGCGCGGCTACCTGTaGGCAAGCGCCGAGCGCCGTCAGCACCGTACTGCG +
Preference number: 6 (lower is better)
Translates to: EPDQRVEQRGYL*ASAERRQHRTA
Trigger: CGCAGTACGGTGCTGACGGCGCTCGGCGCTTGCGCACAGGTAGCCGCGCTGCTCTACGCGTTGATCGGGCTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054984.8