Pregenerated sensors for SFT2D1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073468Ensembl transcript IDs: ENSMUST00000130782.8, ENSMUST00000145276.8, ENSMUST00000154553.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGGGAATGGAGGGCCGTGCAGTGAGGTGCAGCGGTCCATGGCATaGGCTGAGGCTGCTGCTGCTGCTGCTTCTGAGGCGATCACTGGA | + |
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Preference number: 1 (lower is better) Translates to: AGNGGPCSEVQRSMA*AEAAAAAASEAITG Trigger: TCCAGTGATCGCCTCAGAAGCAGCAGCAGCAGCAGCCTCAGCCCATGCCATGGACCGCTGCACCTCACTGCACGGCCCTCCATTCCCTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000145276.8 ENSMUST00000154553.2 |
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| 3UTR TCA 90 bp | TTCCCAAGCACTCCTCCTGGGCTCCTGCGACTTTCAACCCAAGAGTaGGGAGCAGCACTTGAGCACCGCGTCCCTTGCATACGGGATGTA | + |
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Preference number: 1 (lower is better) Translates to: FPSTPPGLLRLSTQE*GAALEHRVPCIRDV Trigger: TACATCCCGTATGCAAGGGACGCGGTGCTCAAGTGCTGCTCCTCACTCTTGGGTTGAAAGTCGCAGGAGCCCAGGAGGAGTGCTTGGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 |
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| 3UTR-3UTR TCA 90 bp | CAGGGAATGGAGGGCCGTGCAGTGAGGTGCAGCGGTCCATGGCATGGGCTGAGGTGCTGCTGCTGCTTCTaGGGCGATCACTGGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: QGMEGRAVRCSGPWHGLRCCCCF*GDHWSR Trigger: CCTGCTCCAGTGATCGCCTCAGAAGCAGCAGCAGCA...CCTCAGCCCATGCCATGGACCGCTGCACCTCACTGCACGGCCCTCCATTCCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000145276.8 ENSMUST00000154553.2 |
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| 3UTR-3UTR TCA 90 bp | GCTTCCCCCAAAGCACACAGAGTCTGCAGCAGGCAAAGCAGAGGACCCAGGCCCCAACCAGTCTCAGCATaGGTGTGCTCACAGGGACCT | + |
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Preference number: 2 (lower is better) Translates to: ASPKAHRVCSRQSRGPRPQPVSA*VCSQGP Trigger: AGGTCCCTGTGAGCACACTCATGCTGAGACTGGTTG...GGGCCTGGGTCCTCTGCTTTGCCTGCTGCAGACTCTGTGTGCTTTGGGGGAAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130782.8 |
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| 3UTR-3UTR CCA 90 bp | GTTCCCAAGCACTCCTCCTGGGCTCCTGCGACTTTCAACCCAAGAGTGAGGAGCGTTCTAGGACAATGGTaGAGTAGGGACAGTGAGCAG | + |
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Preference number: 2 (lower is better) Translates to: VPKHSSWAPATFNPRVRSVLGQW*SRDSEQ Trigger: CTGCTCACTGTCCCTACTCCACCATTGTCCTAGAAC...GCTCCTCACTCTTGGGTTGAAAGTCGCAGGAGCCCAGGAGGAGTGCTTGGGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130782.8 |
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| 3UTR-3UTR TCA 90 bp | AGACTGTACCAGGTCATCGACAAGAACTGCAATATGCAGAAGAGTAAGGCCAGCTGCTGCTGCTGCTTCTaGGGCGATCACTGGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: RLYQVIDKNCNMQKSKASCCCCF*GDHWSR Trigger: CCTGCTCCAGTGATCGCCTCAGAAGCAGCAGCAGCA...GCTGGCCTTACTCTTCTGCATATTGCAGTTCTTGTCGATGACCTGGTACAGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145276.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCCTCCTGGGCTCCTGGTCATCGACAAGAACTaGAATATGCAGAAGAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: TGAGTASALFPSTPPGLLVIDKN*NMQKSK Trigger: CTTACTCTTCTGCATATTGCAGTTCTTGTCGATGAC...CAGGAGCCCAGGAGGAGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 |
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| 3UTR CCA 72 bp | GGAGGGCCGTGCAGTGAGGTGCAGCGGTCCATGGCATaGGCTGAGGCTGCTGCTGCTGCTGCTTCTGAGGCG | + |
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Preference number: 3 (lower is better) Translates to: GGPCSEVQRSMA*AEAAAAAASEA Trigger: CGCCTCAGAAGCAGCAGCAGCAGCAGCCTCAGCCCATGCCATGGACCGCTGCACCTCACTGCACGGCCCTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000145276.8 ENSMUST00000154553.2 |
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| 3UTR TCA 72 bp | ACTCCTCCTGGGCTCCTGCGACTTTCAACCCAAGAGTaGGGAGCAGCACTTGAGCACCGCGTCCCTTGCATA | + |
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Preference number: 3 (lower is better) Translates to: TPPGLLRLSTQE*GAALEHRVPCI Trigger: TATGCAAGGGACGCGGTGCTCAAGTGCTGCTCCTCACTCTTGGGTTGAAAGTCGCAGGAGCCCAGGAGGAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 |
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| 3UTR GCA 72 bp | TTTCACACTGTCGCTTCCCCCAAAGCACACAGAGTCTaGAGCAGGCAAAGCAGAGGACCCAGGCCCAGTCTA | + |
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Preference number: 3 (lower is better) Translates to: FHTVASPKAHRV*SRQSRGPRPSL Trigger: TAGACTGGGCCTGGGTCCTCTGCTTTGCCTGCTGCAGACTCTGTGTGCTTTGGGGGAAGCGACAGTGTGAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130782.8 |
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| CDS-3UTR CCA 90 bp | ACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCCTCCTGGGCTCCTGTGCTCCTCGTCGTCCTaGCCGCTCAAGACGCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: TGAGTASALFPSTPPGLLCSSSS*PLKTRR Trigger: GCGGCGCGTCTTGAGCGGCCAGGACGACGAGGAGCA...CAGGAGCCCAGGAGGAGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 ENSMUST00000154553.2 |
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| CDS-3UTR GCA 90 bp | GTTCCCAAGCACTCCTCCTGGGCTCCTGCGACTTTCAACCCAAGAGTGAGGAGCTGCGCCGTCAGGCCTTaGTCCTCGTCGTCCTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: VPKHSSWAPATFNPRVRSCAVRP*SSSSWP Trigger: CGGCCAGGACGACGAGGAGCAAGGCCTGACGGCGCA...GCTCCTCACTCTTGGGTTGAAAGTCGCAGGAGCCCAGGAGGAGTGCTTGGGAAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 |
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| CDS-3UTR GCA 90 bp | CTTCTGAGGCGATCACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCTGCGCCGTCAGGCCTTaGTCCTCGTCGTCCTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: LLRRSLEQAPHQHCSQALCAVRP*SSSSWP Trigger: CGGCCAGGACGACGAGGAGCAAGGCCTGACGGCGCA...GAGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGTGATCGCCTCAGAAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000145276.8 ENSMUST00000154553.2 |
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| CDS-3UTR CCA 90 bp | AGGCCAGCCCCTTCTTCCGCCACTTCTCTGGGAGCTTTTCACACTGTCGCTTCCTGCTCCTCGTCGTCCTaGCCGCTCAAGACGCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: RPAPSSATSLGAFHTVASCSSSS*PLKTRR Trigger: GCGGCGCGTCTTGAGCGGCCAGGACGACGAGGAGCA...GGAAGCGACAGTGTGAAAAGCTCCCAGAGAAGTGGCGGAAGAAGGGGCTGGCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130782.8 |
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| CDS-3UTR TCA 90 bp | GCAGTGAGGTGCAGCGGTCCATGGCATGGGCTGAGGCTGCTGCTGCTGCTGCTTGTTGAAACTCAGGGATaGGGCATCCAGGACCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: AVRCSGPWHGLRLLLLLLVETQG*GIQDLR Trigger: GCGCAGGTCCTGGATGCCTCATCCCTGAGTTTCAAC...AAGCAGCAGCAGCAGCAGCCTCAGCCCATGCCATGGACCGCTGCACCTCACTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR CCA 90 bp | CAGCACTGTTCCCAAGCACTCCTCCTGGGCTCCTGCGACTTTCAACCCAAGAGTTGCTCCTCGTCGTCCTaGCCGCTCAAGACGCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: QHCSQALLLGSCDFQPKSCSSSS*PLKTRR Trigger: GCGGCGCGTCTTGAGCGGCCAGGACGACGAGGAGCA...ACTCTTGGGTTGAAAGTCGCAGGAGCCCAGGAGGAGTGCTTGGGAACAGTGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 |
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| CDS-3UTR GCA 90 bp | TTTTCACACTGTCGCTTCCCCCAAAGCACACAGAGTCTGCAGCAGGCAAAGCAGTGCGCCGTCAGGCCTTaGTCCTCGTCGTCCTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: FSHCRFPQSTQSLQQAKQCAVRP*SSSSWP Trigger: CGGCCAGGACGACGAGGAGCAAGGCCTGACGGCGCA...CTGCTTTGCCTGCTGCAGACTCTGTGTGCTTTGGGGGAAGCGACAGTGTGAAAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130782.8 |
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| CDS-3UTR GCA 90 bp | GGGAATGGAGGGCCGTGCAGTGAGGTGCAGCGGTCCATGGCATGGGCTGAGGCTGCATGTACTGGCCAATaGAGCAAGGTTTCCAAGGGT | + |
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Preference number: 4 (lower is better) Translates to: GNGGPCSEVQRSMAWAEAACTGQ*SKVSKG Trigger: ACCCTTGGAAACCTTGCTGCATTGGCCAGTACATGC...AGCCTCAGCCCATGCCATGGACCGCTGCACCTCACTGCACGGCCCTCCATTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR TCA 90 bp | CAGGGAATGGAGGGCCGTGCAGTGAGGTGCAGCGGTCCATGGCATGGGCTGAGGCAGCAACAAAGCATATaGCAAACCACTTCAACCTGG | + |
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Preference number: 4 (lower is better) Translates to: QGMEGRAVRCSGPWHGLRQQQSI*QTTSTW Trigger: CCAGGTTGAAGTGGTTTGTCATATGCTTTGTTGCTG...CCTCAGCCCATGCCATGGACCGCTGCACCTCACTGCACGGCCCTCCATTCCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR CCA 90 bp | ACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCCTCCTGGGCTCCTGAGAGTTTCATGCCATTaGGAAGCCATAGCAACCCCG | + |
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Preference number: 4 (lower is better) Translates to: TGAGTASALFPSTPPGLLRVSCH*EAIATP Trigger: CGGGGTTGCTATGGCTTCCCAATGGCATGAAACTCT...CAGGAGCCCAGGAGGAGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR TCA 90 bp | GAGGCGATCACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCCTCCTACTTCAACCTGGTGTTaGAACTCAGGGATGAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: EAITGAGTASALFPSTPPTSTWC*NSGMRH Trigger: ATGCCTCATCCCTGAGTTTCAACACCAGGTTGAAGT...AGGAGGAGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGTGATCGCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR TCA 90 bp | CTGAGGCGATCACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCCTCCCCCGTTCCAAGGAATaGAAAGAAAATGCCAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: LRRSLEQAPHQHCSQALLPRSKE*KENASN Trigger: GTTGCTGGCATTTTCTTTTCATTCCTTGGAACGGGG...GAGGAGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGTGATCGCCTCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR GCA 90 bp | GGCGATCACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCCTCCTGGACAAGAACTGCAATATaGAGAAGAGTAAGGCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GDHWSRHRISTVPKHSSWTRTAI*RRVRPA Trigger: GGCTGGCCTTACTCTTCTGCATATTGCAGTTCTTGT...CCAGGAGGAGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGTGATCGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR GCA 90 bp | GAGGCGATCACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCCTCCTCTGCAAAGAGTTTCATaGCATTGGGAAGCCATAGCA | + |
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Preference number: 4 (lower is better) Translates to: EAITGAGTASALFPSTPPLQRVS*HWEAIA Trigger: TGCTATGGCTTCCCAATGGCATGAAACTCTTTGCAG...AGGAGGAGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGTGATCGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR GCA 90 bp | GCAGTGAGGTGCAGCGGTCCATGGCATGGGCTGAGGCTGCTGCTGCTGCTGCTTGTCATCGACAAGAACTaGAATATGCAGAAGAGTAAG | + |
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Preference number: 4 (lower is better) Translates to: AVRCSGPWHGLRLLLLLLVIDKN*NMQKSK Trigger: CTTACTCTTCTGCATATTGCAGTTCTTGTCGATGAC...AAGCAGCAGCAGCAGCAGCCTCAGCCCATGCCATGGACCGCTGCACCTCACTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR GCA 90 bp | GGGAATGGAGGGCCGTGCAGTGAGGTGCAGCGGTCCATGGCATGGGCTGAGGCTAAGGGTGTAAAATACTaGAAAGAGTTTCATGCCATT | + |
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Preference number: 4 (lower is better) Translates to: GNGGPCSEVQRSMAWAEAKGVKY*KEFHAI Trigger: AATGGCATGAAACTCTTTGCAGTATTTTACACCCTT...AGCCTCAGCCCATGCCATGGACCGCTGCACCTCACTGCACGGCCCTCCATTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR CCA 90 bp | CTTCTGAGGCGATCACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCTTAAAAAGCATGTACTaGCCAATGCAGCAAGGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LLRRSLEQAPHQHCSQALLKSMY*PMQQGF Trigger: GAAACCTTGCTGCATTGGCCAGTACATGCTTTTTAA...GAGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGTGATCGCCTCAGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS-3UTR GCA 90 bp | CGCATCAGCACTGTTCCCAAGCACTCCTCCTGGGCTCCTGCGACTTTCAACCCAAACATTTTCTTCAGTTaGTTCACAGGTCCCATTAAA | + |
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Preference number: 4 (lower is better) Translates to: RISTVPKHSSWAPATFNPNIFFS*FTGPIK Trigger: TTTAATGGGACCTGTGAAGCAACTGAAGAAAATGTT...TGGGTTGAAAGTCGCAGGAGCCCAGGAGGAGTGCTTGGGAACAGTGCTGATGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 |
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| CDS-3UTR GCA 90 bp | CTTGAGCACCGCGTCCCTTGCATACGGGATGTAGGACAGACTGTACCAGGTCATAACATTTTCTTCAGTTaGTTCACAGGTCCCATTAAA | + |
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Preference number: 4 (lower is better) Translates to: LEHRVPCIRDVGQTVPGHNIFFS*FTGPIK Trigger: TTTAATGGGACCTGTGAAGCAACTGAAGAAAATGTT...ATGACCTGGTACAGTCTGTCCTACATCCCGTATGCAAGGGACGCGGTGCTCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 |
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| CDS-3UTR CAA 90 bp | GCTTCTGAGGCGATCACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCTGCGCCGTCAGGCCTaGCTCCTCGTCGTCCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: ASEAITGAGTASALFPSTLRRQA*LLVVLA Trigger: GGCCAGGACGACGAGGAGCAAGGCCTGACGGCGCAG...AGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGTGATCGCCTCAGAAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000145276.8 ENSMUST00000154553.2 |
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| CDS-3UTR CAA 90 bp | AGACTGTACCAGGTCATCGACAAGAACTGCAATATGCAGAAGAGTAAGGCCAGCCTGCGCCGTCAGGCCTaGCTCCTCGTCGTCCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: RLYQVIDKNCNMQKSKASLRRQA*LLVVLA Trigger: GGCCAGGACGACGAGGAGCAAGGCCTGACGGCGCAG...GCTGGCCTTACTCTTCTGCATATTGCAGTTCTTGTCGATGACCTGGTACAGTCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 |
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| CDS-3UTR CAA 90 bp | CGCCACCACAGAGCAGCACACAGGGTAAATACCAGGCACAAAAGCATAATAATTCTGCGCCGTCAGGCCTaGCTCCTCGTCGTCCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: RHHRAAHRVNTRHKSIIILRRQA*LLVVLA Trigger: GGCCAGGACGACGAGGAGCAAGGCCTGACGGCGCAG...AATTATTATGCTTTTGTGCCTGGTATTTACCCTGTGTGCTGCTCTGTGGTGGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145276.8 |
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| CDS-3UTR CAA 90 bp | GCTTCTGAGGCGATCACTGGAGCAGGCACCGCATCAGCACTGTTCCCAAGCACTCACTTCAACCTGGTGTaGAAACTCAGGGATGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: ASEAITGAGTASALFPSTHFNLV*KLRDEA Trigger: TGCCTCATCCCTGAGTTTCAACACCAGGTTGAAGTG...AGTGCTTGGGAACAGTGCTGATGCGGTGCCTGCTCCAGTGATCGCCTCAGAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS GCA 90 bp | AGCAGCACACAGGGTAAATACCAGGCACAAAAGCATAATAATTGTTaGAAGCAATCTTGTTGTTTCAAACATTTTCTTCAGTTGCTTCAC | + |
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Preference number: 5 (lower is better) Translates to: SSTQGKYQAQKHNNC*KQSCCFKHFLQLLH Trigger: GTGAAGCAACTGAAGAAAATGTTTGAAACAACAAGATTGCTTGCAACAATTATTATGCTTTTGTGCCTGGTATTTACCCTGTGTGCTGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS GCA 72 bp | AGGGATGAGGCATCCAGGACCTGCGCCGTCAGGCCTTaGTCCTCGTCGTCCTGGCCGCTCAAGACGCGCCGC | + |
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Preference number: 6 (lower is better) Translates to: RDEASRTCAVRP*SSSSWPLKTRR Trigger: GCGGCGCGTCTTGAGCGGCCAGGACGACGAGGAGCAAGGCCTGACGGCGCAGGTCCTGGATGCCTCATCCCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS GCA 72 bp | GTCCCATTAAAAAGCATGTACTGCGCCGTCAGGCCTTaGTCCTCGTCGTCCTGGCCGCTCAAGACGCGCCGC | + |
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Preference number: 6 (lower is better) Translates to: VPLKSMYCAVRP*SSSSWPLKTRR Trigger: GCGGCGCGTCTTGAGCGGCCAGGACGACGAGGAGCAAGGCCTGACGGCGCAGTACATGCTTTTTAATGGGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 |
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| CDS CAA 72 bp | GGTCCCATTAAAAAGCATGTACTGCGCCGTCAGGCCTaGCTCCTCGTCGTCCTGGCCGCTCAAGACGCGCCG | + |
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Preference number: 6 (lower is better) Translates to: GPIKKHVLRRQA*LLVVLAAQDAP Trigger: CGGCGCGTCTTGAGCGGCCAGGACGACGAGGAGCAAGGCCTGACGGCGCAGTACATGCTTTTTAATGGGACC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130782.8 ENSMUST00000145276.8 |
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| CDS TCA 72 bp | GACAAACCACTTCAACCTGGTGTTGAAACTCAGGGATaGGGCATCCAGGACCTGCGCCGTCAGGCCTTGCTC | + |
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Preference number: 6 (lower is better) Translates to: DKPLQPGVETQG*GIQDLRRQALL Trigger: GAGCAAGGCCTGACGGCGCAGGTCCTGGATGCCTCATCCCTGAGTTTCAACACCAGGTTGAAGTGGTTTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS CAA 90 bp | AAAATGCCAGCAACAAAGCATATGACAAACCACTTCAACCTGGTGTaGAAACTCAGGGATGAGGCATCCAGGACCTGCGCCGTCAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: KMPATKHMTNHFNLV*KLRDEASRTCAVRP Trigger: AGGCCTGACGGCGCAGGTCCTGGATGCCTCATCCCTGAGTTTCAACACCAGGTTGAAGTGGTTTGTCATATGCTTTGTTGCTGGCATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS CAA 72 bp | GCAACAAAGCATATGACAAACCACTTCAACCTGGTGTaGAAACTCAGGGATGAGGCATCCAGGACCTGCGCC | + |
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Preference number: 6 (lower is better) Translates to: ATKHMTNHFNLV*KLRDEASRTCA Trigger: GGCGCAGGTCCTGGATGCCTCATCCCTGAGTTTCAACACCAGGTTGAAGTGGTTTGTCATATGCTTTGTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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| CDS GCA 72 bp | GGTTTCCAAGGGTGTAAAATACTGCAAAGAGTTTCATaGCATTGGGAAGCCATAGCAACCCCGTTCCAAGGA | + |
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Preference number: 6 (lower is better) Translates to: GFQGCKILQRVS*HWEAIATPFQG Trigger: TCCTTGGAACGGGGTTGCTATGGCTTCCCAATGGCATGAAACTCTTTGCAGTATTTTACACCCTTGGAAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154553.2 |
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