RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SFSWAP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029439

Ensembl transcript IDs: ENSMUST00000053737.9, ENSMUST00000196698.5, ENSMUST00000199215.2, ENSMUST00000200500.2

Found 219 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTTTCTTCTCCTCTACAGCCACGGAGGGCGGGGCGGCAGCAGGGCTaGGGTTGGCCACGCTGCTTGTGCTTTCCTGGCACTCCCTGCTTT +
Preference number: 1 (lower is better)
Translates to: VSSPLQPRRAGRQQG*GWPRCLCFPGTPCF
Trigger: AAAGCAGGGAGTGCCAGGAAAGCACAAGCAGCGTGGCCAACCCCAGCCCTGCTGCCGCCCCGCCCTCCGTGGCTGTAGAGGAGAAGAAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000196698.5
ENSMUST00000199215.2
3UTR TCA 90 bp CCGCCGCACTGTCCGGTAGGCACTGGGCAGGGAGTGCTTTGCTTTTaGGTGGGATCTAGACCTGGGCTTGGAAGACGAGTGGTACTTGGG +
Preference number: 1 (lower is better)
Translates to: PPHCPVGTGQGVLCF*VGSRPGLGRRVVLG
Trigger: CCCAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATCCCACTCAAAAGCAAAGCACTCCCTGCCCAGTGCCTACCGGACAGTGCGGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 90 bp GTGAGCTGGACACAGTCACTCCAGCAGGAAGGGTGCTGTAGTAAGTaGCCACATCGATCCCAGGTGGGGGTGGTGCCAGGCAGTAGGTAC +
Preference number: 1 (lower is better)
Translates to: VSWTQSLQQEGCCSK*PHRSQVGVVPGSRY
Trigger: GTACCTACTGCCTGGCACCACCCCCACCTGGGATCGATGTGGCCACTTACTACAGCACCCTTCCTGCTGGAGTGACTGTGTCCAGCTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR TCA 90 bp GCTGAGCTGTCAGCTTGTGCTTTCCGGACAAGGGCTGCTAGAGGGTaGTCCGGGTCCACCACCTTCAAGGGCTTCATCAGCTCTTCCAGG +
Preference number: 1 (lower is better)
Translates to: AELSACAFRTRAARG*SGSTTFKGFISSSR
Trigger: CCTGGAAGAGCTGATGAAGCCCTTGAAGGTGGTGGACCCGGATCACCCTCTAGCAGCCCTTGTCCGGAAAGCACAAGCTGACAGCTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR TCA 90 bp AGGTGTGGTCCCAGGAGGCGGTGGTACAGTGGTAGTCACACCAGGTaGGCTGGACACAGTCACTCCAGCAGGAAGGGTGCTGTAGTAAGT +
Preference number: 1 (lower is better)
Translates to: RCGPRRRWYSGSHTR*AGHSHSSRKGAVVS
Trigger: ACTTACTACAGCACCCTTCCTGCTGGAGTGACTGTGTCCAGCTCACCTGGTGTGACTACCACTGTACCACCGCCTCCTGGGACCACACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 90 bp AGGAAGGGTGCTGTAGTAAGTGGCCACATCGATCCCAGGTGGGGGTaGTGCCAGGCAGTAGGTACCATCTGGCAACATGTAGTAGCTGTA +
Preference number: 1 (lower is better)
Translates to: RKGAVVSGHIDPRWG*CQAVGTIWQHVVAV
Trigger: TACAGCTACTACATGTTGCCAGATGGTACCTACTGCCTGGCACCACCCCCACCTGGGATCGATGTGGCCACTTACTACAGCACCCTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 90 bp CTTTCCTTTTACGTTCAGCCTGAAGCTGCTTCTCCTTTGATTCCTTaGACGCCTGGGCTAGCTTTTCCCGGGCAGCAGCAGCAAGGCGGT +
Preference number: 1 (lower is better)
Translates to: LSFYVQPEAASPLIP*TPGLAFPGQQQQGG
Trigger: ACCGCCTTGCTGCTGCTGCCCGGGAAAAGCTAGCCCAGGCGTCCAAGGAATCAAAGGAGAAGCAGCTTCAGGCTGAACGTAAAAGGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000196698.5
ENSMUST00000199215.2
3UTR TCA 90 bp CGAACTGTGCTCCCTGCTTGCATACGAAGTTGGCTGTGCGCTCAATaGTGGCATGCATTTTGGCTGTTGGTGGCAGCTCCACATCAGACG +
Preference number: 1 (lower is better)
Translates to: RTVLPACIRSWLCAQ*WHAFWLLVAAPHQT
Trigger: CGTCTGATGTGGAGCTGCCACCAACAGCCAAAATGCATGCCATCATTGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR TCA 90 bp ACCCGACTCTTCAACAGCGGTTTCTGTGGGAGCCTCTTCAGCTGTTaGTGCTGCCTGTGTGCTACCGCCTCCTTCTTTCTGCAGGAAGAA +
Preference number: 1 (lower is better)
Translates to: TRLFNSGFCGSLFSC*CCLCATASFFLQEE
Trigger: TTCTTCCTGCAGAAAGAAGGAGGCGGTAGCACACAGGCAGCATCAACAGCTGAAGAGGCTCCCACAGAAACCGCTGTTGAAGAGTCGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR GCA 90 bp AAGGGTGCTGTAGTAAGTGGCCACATCGATCCCAGGTGGGGGTGGTaGCAGGCAGTAGGTACCATCTGGCAACATGTAGTAGCTGTAGTA +
Preference number: 1 (lower is better)
Translates to: KGAVVSGHIDPRWGW*QAVGTIWQHVVAVV
Trigger: TACTACAGCTACTACATGTTGCCAGATGGTACCTACTGCCTGGCACCACCCCCACCTGGGATCGATGTGGCCACTTACTACAGCACCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR TCA 90 bp GTAGGAAGTCGAACTGTGAGTTTCGAGCTTGCTTGGCCTTCAGCATaGTCTCGAACTGTGCTCCCTGCTTGCATACGAAGTTGGCTGTGC +
Preference number: 1 (lower is better)
Translates to: VGSRTVSFELAWPSA*SRTVLPACIRSWLC
Trigger: GCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCGAGATCATGCTGAAGGCCAAGCAAGCTCGAAACTCACAGTTCGACTTCCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR TCA 90 bp TTTAAGGTTTGTAAGAACAACGCTGCTTTCCTTTTACGTTCAGCCTaGAGCTGCTTCTCCTTTGATTCCTTGGACGCCTGGGCTAGCTTT +
Preference number: 1 (lower is better)
Translates to: FKVCKNNAAFLLRSA*SCFSFDSLDAWASF
Trigger: AAAGCTAGCCCAGGCGTCCAAGGAATCAAAGGAGAAGCAGCTTCAGGCTGAACGTAAAAGGAAAGCAGCGTTGTTCTTACAAACCTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000196698.5
ENSMUST00000199215.2
3UTR TCA 90 bp CTTTTTCTCTCTTTCTTCTTCTCTTGGTGGATCTCTGCATCTGTTTaGAGGCCTTTCTGGAGGCTTCCCTTCCAATATGGGCAGAGTTCT +
Preference number: 1 (lower is better)
Translates to: LFLSFFFSWWISASV*RPFWRLPFQYGQSS
Trigger: AGAACTCTGCCCATATTGGAAGGGAAGCCTCCAGAAAGGCCTTCAAACAGATGCAGAGATCCACCAAGAGAAGAAGAAAGAGAGAAAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR GCA 90 bp GCTTCTTCTTCTTTTTCTCTCTTTCTTCTTCTCTTGGTGGATCTCTaGATCTGTTTGAAGGCCTTTCTGGAGGCTTCCCTTCCAATATGG +
Preference number: 1 (lower is better)
Translates to: ASSSFSLFLLLLVDL*ICLKAFLEASLPIW
Trigger: CCATATTGGAAGGGAAGCCTCCAGAAAGGCCTTCAAACAGATGCAGAGATCCACCAAGAGAAGAAGAAAGAGAGAAAAAGAAGAAGAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR GCA 90 bp CCTTTTCCTGCTGACCCCAGGGCTGCCGCTCATCCGGTAGGCTGTAGGGACACTAGCAGGTGTGCCATCTaGAGTGGGTGGGGCTGGAGC +
Preference number: 2 (lower is better)
Translates to: PFPADPRAAAHPVGCRDTSRCAI*SGWGWS
Trigger: GCTCCAGCCCCACCCACTGCAGATGGCACACCTGCT...AGTGTCCCTACAGCCTACCGGATGAGCGGCAGCCCTGGGGTCAGCAGGAAAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CAA 90 bp TCTCAGGAGAGTGAGCTCTCCTTCTTGGGGACCGAGACCGTGACCTaGACCGCCGCACTGTCCGGTAGGCACTGGGCAGGGAGTGCTTTG +
Preference number: 2 (lower is better)
Translates to: SQESELSFLGTETVT*TAALSGRHWAGSAL
Trigger: CAAAGCACTCCCTGCCCAGTGCCTACCGGACAGTGCGGCGGTCAAGGTCACGGTCTCGGTCCCCAAGAAGGAGAGCTCACTCTCCTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CCA 90 bp GGTAAGCTGTGGTTTCTTCTCCTCTACAGCCACGGAGGGCGGGGCGGCAGCAGGGCTCCTCCTCTTCCGTaGGCTCTGACGGGTCATAAT +
Preference number: 2 (lower is better)
Translates to: GKLWFLLLYSHGGRGGSRAPPLP*ALTGHN
Trigger: ATTATGACCCGTCAGAGCCCACGGAAGAGGAGGAGC...CCTGCTGCCGCCCCGCCCTCCGTGGCTGTAGAGGAGAAGAAACCACAGCTTACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CCA 90 bp ACTTCTGGAACGGGTCCTTTTCCTGCTGACCCCAGGGCTGCCGCTCATCCGGTATGCTTGGTTCAGCTGTaGTTGGGGGTGGAGGAGGTG +
Preference number: 2 (lower is better)
Translates to: TSGTGPFPADPRAAAHPVCLVQL*LGVEEV
Trigger: CACCTCCTCCACCCCCAACCACAGCTGAACCAAGCA...TACCGGATGAGCGGCAGCCCTGGGGTCAGCAGGAAAAGGACCCGTTCCAGAAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CAA 90 bp CTGGGCAGGGAGTGCTTTGCTTTTGAGTGGGATCTAGACCTGGGCTaGGAAGACGAGTGGTACTTGGGAGAGCGGGACCTTGTCCGAGAC +
Preference number: 2 (lower is better)
Translates to: LGRECFAFEWDLDLG*EDEWYLGERDLVRD
Trigger: GTCTCGGACAAGGTCCCGCTCTCCCAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATCCCACTCAAAAGCAAAGCACTCCCTGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CCA 90 bp CCTTTTCCTGCTGACCCCAGGGCTGCCGCTCATCCGGTAGGCTGTAGGGACACTATGCATTTTGGCTGTTaGTGGCAGCTCCACATCAGA +
Preference number: 2 (lower is better)
Translates to: PFPADPRAAAHPVGCRDTMHFGC*WQLHIR
Trigger: TCTGATGTGGAGCTGCCACCAACAGCCAAAATGCAT...AGTGTCCCTACAGCCTACCGGATGAGCGGCAGCCCTGGGGTCAGCAGGAAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CAA 90 bp CACCCGACTCTTCAACAGCGGTTTCTGTGGGAGCCTCTTCAGCTGTaGATGCTGCCTGTGTGCTACCGCCTCCTTCTTTCTGCAGGAAGA +
Preference number: 2 (lower is better)
Translates to: HPTLQQRFLWEPLQL*MLPVCYRLLLSAGR
Trigger: TCTTCCTGCAGAAAGAAGGAGGCGGTAGCACACAGGCAGCATCAACAGCTGAAGAGGCTCCCACAGAAACCGCTGTTGAAGAGTCGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR GCA 90 bp GGCTTGGAAGACGAGTGGTACTTGGGAGAGCGGGACCTTGTCCGAGACCGTTTTGCTCTTCCAGGCGGCTaGTCTTCTTGGAAGCAAAGA +
Preference number: 2 (lower is better)
Translates to: GLEDEWYLGERDLVRDRFALPGG*SSWKQR
Trigger: TCTTTGCTTCCAAGAAGAGCAGCCGCCTGGAAGAGC...AAAACGGTCTCGGACAAGGTCCCGCTCTCCCAAGTACCACTCGTCTTCCAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR GCA 90 bp ACTTCTGGAACGGGTCCTTTTCCTGCTGACCCCAGGGCTGCCGCTCATCCGGTAAGCTTTTGTTTTGCTTaGTTGGCTTCCAGCTCCTCC +
Preference number: 2 (lower is better)
Translates to: TSGTGPFPADPRAAAHPVSFCFA*LASSSS
Trigger: GGAGGAGCTGGAAGCCAAGCAAGCAAAACAAAAGCT...TACCGGATGAGCGGCAGCCCTGGGGTCAGCAGGAAAAGGACCCGTTCCAGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CAA 90 bp ACAACGCTGCTTTCCTTTTACGTTCAGCCTGAAGCTGCTTCTCCTTaGATTCCTTGGACGCCTGGGCTAGCTTTTCCCGGGCAGCAGCAG +
Preference number: 2 (lower is better)
Translates to: TTLLSFYVQPEAASP*IPWTPGLAFPGQQQ
Trigger: CTGCTGCTGCCCGGGAAAAGCTAGCCCAGGCGTCCAAGGAATCAAAGGAGAAGCAGCTTCAGGCTGAACGTAAAAGGAAAGCAGCGTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000196698.5
ENSMUST00000199215.2
3UTR CAA 90 bp GCCTTCAGCATGATCTCGAACTGTGCTCCCTGCTTGCATACGAAGTaGGCTGTGCGCTCAATGATGGCATGCATTTTGGCTGTTGGTGGC +
Preference number: 2 (lower is better)
Translates to: AFSMISNCAPCLHTK*AVRSMMACILAVGG
Trigger: GCCACCAACAGCCAAAATGCATGCCATCATTGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCGAGATCATGCTGAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR GCA 90 bp GGCTTGGAAGACGAGTGGTACTTGGGAGAGCGGGACCTTGTCCGAGACCGTTTTTGTGAGTTTCGAGCTTaGTTGGCCTTCAGCATGATC +
Preference number: 2 (lower is better)
Translates to: GLEDEWYLGERDLVRDRFCEFRA*LAFSMI
Trigger: GATCATGCTGAAGGCCAAGCAAGCTCGAAACTCACA...AAAACGGTCTCGGACAAGGTCCCGCTCTCCCAAGTACCACTCGTCTTCCAAGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CCA 90 bp TTCTTGGCTCGAACACTGGTCTCAAATTTAAGGCCGTTTCTAGCGACGTACTCTAGCTGTGGTTGGGGGTaGAGGAGGTGTGGTCCCAGG +
Preference number: 2 (lower is better)
Translates to: FLARTLVSNLRPFLATYSSCGWG*RRCGPR
Trigger: CCTGGGACCACACCTCCTCCACCCCCAACCACAGCT...AGAGTACGTCGCTAGAAACGGCCTTAAATTTGAGACCAGTGTTCGAGCCAAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CAA 90 bp TGCTTGCATACGAAGTTGGCTGTGCGCTCAATGATGGCATGCATTTaGGCTGTTGGTGGCAGCTCCACATCAGACGGGACGCTTAATCCT +
Preference number: 2 (lower is better)
Translates to: CLHTKLAVRSMMACI*AVGGSSTSDGTLNP
Trigger: AGGATTAAGCGTCCCGTCTGATGTGGAGCTGCCACCAACAGCCAAAATGCATGCCATCATTGAGCGCACAGCCAACTTCGTATGCAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CAA 90 bp CGAGCTTGCTTGGCCTTCAGCATGATCTCGAACTGTGCTCCCTGCTaGCATACGAAGTTGGCTGTGCGCTCAATGATGGCATGCATTTTG +
Preference number: 2 (lower is better)
Translates to: RACLAFSMISNCAPC*HTKLAVRSMMACIL
Trigger: CAAAATGCATGCCATCATTGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCGAGATCATGCTGAAGGCCAAGCAAGCTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR TCA 90 bp ACTTCTGGAACGGGTCCTTTTCCTGCTGACCCCAGGGCTGCCGCTCATCCGGTACATTTTCTTTGGCTTTaGTGGCAAAGCTTATTGGAG +
Preference number: 2 (lower is better)
Translates to: TSGTGPFPADPRAAAHPVHFLWL*WQSLLE
Trigger: CTCCAATAAGCTTTGCCATCAAAGCCAAAGAAAATG...TACCGGATGAGCGGCAGCCCTGGGGTCAGCAGGAAAAGGACCCGTTCCAGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR GCA 90 bp TGTACTGGTGCCAGGGCTGAAGAAATTCAAATCTTTGATCGTTCTTGGCTCGAACCCAGGTGGGGGTGGTaGCAGGCAGTAGGTACCATC +
Preference number: 2 (lower is better)
Translates to: CTGARAEEIQIFDRSWLEPRWGW*QAVGTI
Trigger: GATGGTACCTACTGCCTGGCACCACCCCCACCTGGG...TTCGAGCCAAGAACGATCAAAGATTTGAATTTCTTCAGCCCTGGCACCAGTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR TCA 90 bp TTCTTGGCTCGAACACTGGTCTCAAATTTAAGGCCGTTTCTAGCGACGTACTCTCTCTTCCGTGGGCTCTaGCGGGTCATAATAGTCGCT +
Preference number: 2 (lower is better)
Translates to: FLARTLVSNLRPFLATYSLFRGL*RVIIVA
Trigger: AGCGACTATTATGACCCGTCAGAGCCCACGGAAGAG...AGAGTACGTCGCTAGAAACGGCCTTAAATTTGAGACCAGTGTTCGAGCCAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CCA 90 bp TGTACTGGTGCCAGGGCTGAAGAAATTCAAATCTTTGATCGTTCTTGGCTCGAATGGTTCAGCTGTGGTTaGGGGTGGAGGAGGTGTGGT +
Preference number: 2 (lower is better)
Translates to: CTGARAEEIQIFDRSWLEWFSCG*GWRRCG
Trigger: ACCACACCTCCTCCACCCCCAACCACAGCTGAACCA...TTCGAGCCAAGAACGATCAAAGATTTGAATTTCTTCAGCCCTGGCACCAGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR TCA 90 bp TGCTTCTTCTTCTTTTTCTCTCTTTCTTCTTCTCTTGGTGGATCTCTGCATCTGGGGTGGGGCTGGAGCTaGGCTGTCAGCTTGTGCTTT +
Preference number: 2 (lower is better)
Translates to: CFFFFFSLSSSLGGSLHLGWGWS*AVSLCF
Trigger: AAAGCACAAGCTGACAGCTCAGCTCCAGCCCCACCC...CAGATGCAGAGATCCACCAAGAGAAGAAGAAAGAGAGAAAAAGAAGAAGAAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR GCA 90 bp CTGGTCTCAAATTTAAGGCCGTTTCTAGCGACGTACTCTGCCAGCTTGTCAATCTCGAACTGTGCTCCCTaGTTGCATACGAAGTTGGCT +
Preference number: 2 (lower is better)
Translates to: LVSNLRPFLATYSASLSISNCAP*LHTKLA
Trigger: AGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCGA...GATTGACAAGCTGGCAGAGTACGTCGCTAGAAACGGCCTTAAATTTGAGACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CAA 90 bp GACGAGTGGTACTTGGGAGAGCGGGACCTTGTCCGAGACCGTTTTTaGTGCTTCTTCTTCTTTTTCTCTCTTTCTTCTTCTCTTGGTGGA +
Preference number: 2 (lower is better)
Translates to: DEWYLGERDLVRDRF*CFFFFFSLSSSLGG
Trigger: TCCACCAAGAGAAGAAGAAAGAGAGAAAAAGAAGAAGAAGCACAAAAAACGGTCTCGGACAAGGTCCCGCTCTCCCAAGTACCACTCGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR GCA 90 bp CGTAGTAGGCGTTGTACTGGTGCCAGGGCTGAAGAAATTCAAATCTTTGATCGTTCTAGCGACGTACTCTaGCAGCTTGTCAATCACAGG +
Preference number: 2 (lower is better)
Translates to: RSRRCTGARAEEIQIFDRSSDVL*QLVNHR
Trigger: CCTGTGATTGACAAGCTGGCAGAGTACGTCGCTAGA...ACGATCAAAGATTTGAATTTCTTCAGCCCTGGCACCAGTACAACGCCTACTACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR GCA 90 bp CAGAACGCAAAGACTCCTGTTTTTCCAATCCACTGGGTACTTGCCTTGCCTCCTTCAAGCAAGTCCGTATaGAAGGCTAAATACCTCTCT +
Preference number: 2 (lower is better)
Translates to: QNAKTPVFPIHWVLALPPSSKSV*KAKYLS
Trigger: AGAGAGGTATTTAGCCTTGCATACGGACTTGCTTGA...AGGAGGCAAGGCAAGTACCCAGTGGATTGGAAAAACAGGAGTCTTTGCGTTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200500.2
3UTR CAA 90 bp TCTTTTTCTCTCTTTCTTCTTCTCTTGGTGGATCTCTGCATCTGTTaGAAGGCCTTTCTGGAGGCTTCCCTTCCAATATGGGCAGAGTTC +
Preference number: 2 (lower is better)
Translates to: SFSLFLLLLVDLCIC*KAFLEASLPIWAEF
Trigger: GAACTCTGCCCATATTGGAAGGGAAGCCTCCAGAAAGGCCTTCAAACAGATGCAGAGATCCACCAAGAGAAGAAGAAAGAGAGAAAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CCA 90 bp TGCTTCTTCTTCTTTTTCTCTCTTTCTTCTTCTCTTGGTGGATCTCTGCATCTGTCTCCTTTGATTCCTTaGACGCCTGGGCTAGCTTTT +
Preference number: 2 (lower is better)
Translates to: CFFFFFSLSSSLGGSLHLSPLIP*TPGLAF
Trigger: AAAAGCTAGCCCAGGCGTCCAAGGAATCAAAGGAGA...CAGATGCAGAGATCCACCAAGAGAAGAAGAAAGAGAGAAAAAGAAGAAGAAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 72 bp CCTCTACAGCCACGGAGGGCGGGGCGGCAGCAGGGCTaGGGTTGGCCACGCTGCTTGTGCTTTCCTGGCACT +
Preference number: 3 (lower is better)
Translates to: PLQPRRAGRQQG*GWPRCLCFPGT
Trigger: AGTGCCAGGAAAGCACAAGCAGCGTGGCCAACCCCAGCCCTGCTGCCGCCCCGCCCTCCGTGGCTGTAGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000196698.5
ENSMUST00000199215.2
3UTR GCA 72 bp AGGGCGGGGCGGCAGCAGGGCTGGGGTTGGCCACGCTaGTTGTGCTTTCCTGGCACTCCCTGCTTTCTTCAT +
Preference number: 3 (lower is better)
Translates to: RAGRQQGWGWPR*LCFPGTPCFLH
Trigger: ATGAAGAAAGCAGGGAGTGCCAGGAAAGCACAAGCAGCGTGGCCAACCCCAGCCCTGCTGCCGCCCCGCCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000196698.5
ENSMUST00000199215.2
3UTR TCA 72 bp CCCAGGAGGCGGTGGTACAGTGGTAGTCACACCAGGTaGGCTGGACACAGTCACTCCAGCAGGAAGGGTGCT +
Preference number: 3 (lower is better)
Translates to: PRRRWYSGSHTR*AGHSHSSRKGA
Trigger: AGCACCCTTCCTGCTGGAGTGACTGTGTCCAGCTCACCTGGTGTGACTACCACTGTACCACCGCCTCCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 72 bp ACACAGTCACTCCAGCAGGAAGGGTGCTGTAGTAAGTaGCCACATCGATCCCAGGTGGGGGTGGTGCCAGGC +
Preference number: 3 (lower is better)
Translates to: TQSLQQEGCCSK*PHRSQVGVVPG
Trigger: GCCTGGCACCACCCCCACCTGGGATCGATGTGGCCACTTACTACAGCACCCTTCCTGCTGGAGTGACTGTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CAA 90 bp CCTGCTGACCCCAGGGCTGCCGCTCATCCGGTAGGCTGTAGGGACACTCCTTTCCATGCATTTTGGCTGTaGGTGGCAGCTCCACATCAG +
Preference number: 3 (lower is better)
Translates to: PADPRAAAHPVGCRDTPFHAFWL*VAAPHQ
Trigger: CTGATGTGGAGCTGCCACCAACAGCCAAAATGCATG...GAAAGGAGTGTCCCTACAGCCTACCGGATGAGCGGCAGCCCTGGGGTCAGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR GCA 72 bp CAGGTGAGCTGGACACAGTCACTCCAGCAGGAAGGGTaGTGTAGTAAGTGGCCACATCGATCCCAGGTGGGG +
Preference number: 3 (lower is better)
Translates to: QVSWTQSLQQEG*CSKWPHRSQVG
Trigger: CCCCACCTGGGATCGATGTGGCCACTTACTACAGCACCCTTCCTGCTGGAGTGACTGTGTCCAGCTCACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CAA 90 bp CGGGCAGCAGCAGCAAGGCGGTCCTCCAGCTTTTGTTTTGCTTGCTTGGCTTCCAGGCGGCTGCTCTTCTaGGAAGCAAAGAGAGACGGG +
Preference number: 3 (lower is better)
Translates to: RAAAARRSSSFCFACLASRRLLF*EAKRDG
Trigger: CCCGTCTCTCTTTGCTTCCAAGAAGAGCAGCCGCCT...GGAAGCCAAGCAAGCAAAACAAAAGCTGGAGGACCGCCTTGCTGCTGCTGCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CAA 90 bp CCTGCTGACCCCAGGGCTGCCGCTCATCCGGTAGGCTGTAGGGACACTCCTTTCCTTCGTTGTCAGAGGTaGGCCCAGACTTTTTCTTCT +
Preference number: 3 (lower is better)
Translates to: PADPRAAAHPVGCRDTPFLRCQR*AQTFSS
Trigger: AGAAGAAAAAGTCTGGGCCAACCTCTGACAACGAAG...GAAAGGAGTGTCCCTACAGCCTACCGGATGAGCGGCAGCCCTGGGGTCAGCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CAA 90 bp ACTTCTGGAACGGGTCCTTTTCCTGCTGACCCCAGGGCTGCCGCTCATCCGGTAGATCTAGACCTGGGCTaGGAAGACGAGTGGTACTTG +
Preference number: 3 (lower is better)
Translates to: TSGTGPFPADPRAAAHPVDLDLG*EDEWYL
Trigger: CAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATC...TACCGGATGAGCGGCAGCCCTGGGGTCAGCAGGAAAAGGACCCGTTCCAGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR TCA 72 bp TCAGCTTGTGCTTTCCGGACAAGGGCTGCTAGAGGGTaGTCCGGGTCCACCACCTTCAAGGGCTTCATCAGC +
Preference number: 3 (lower is better)
Translates to: SACAFRTRAARG*SGSTTFKGFIS
Trigger: GCTGATGAAGCCCTTGAAGGTGGTGGACCCGGATCACCCTCTAGCAGCCCTTGTCCGGAAAGCACAAGCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 72 bp CCCAGGTGGGGGTGGTGCCAGGCAGTAGGTACCATCTaGCAACATGTAGTAGCTGTAGTACATGGCTGCCAC +
Preference number: 3 (lower is better)
Translates to: PRWGWCQAVGTI*QHVVAVVHGCH
Trigger: GTGGCAGCCATGTACTACAGCTACTACATGTTGCCAGATGGTACCTACTGCCTGGCACCACCCCCACCTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR TCA 72 bp TCTCTGCTTCGAAGGCTCCTCCTCTTCCGTGGGCTCTaGCGGGTCATAATAGTCGCTGCCGTAAGTGAACCC +
Preference number: 3 (lower is better)
Translates to: SLLRRLLLFRGL*RVIIVAAVSEP
Trigger: GGGTTCACTTACGGCAGCGACTATTATGACCCGTCAGAGCCCACGGAAGAGGAGGAGCCTTCGAAGCAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 72 bp GCTGTAGTAAGTGGCCACATCGATCCCAGGTGGGGGTaGTGCCAGGCAGTAGGTACCATCTGGCAACATGTA +
Preference number: 3 (lower is better)
Translates to: AVVSGHIDPRWG*CQAVGTIWQHV
Trigger: TACATGTTGCCAGATGGTACCTACTGCCTGGCACCACCCCCACCTGGGATCGATGTGGCCACTTACTACAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 72 bp TACGTTCAGCCTGAAGCTGCTTCTCCTTTGATTCCTTaGACGCCTGGGCTAGCTTTTCCCGGGCAGCAGCAG +
Preference number: 3 (lower is better)
Translates to: YVQPEAASPLIP*TPGLAFPGQQQ
Trigger: CTGCTGCTGCCCGGGAAAAGCTAGCCCAGGCGTCCAAGGAATCAAAGGAGAAGCAGCTTCAGGCTGAACGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000196698.5
ENSMUST00000199215.2
3UTR TCA 72 bp TGGGCTCTGACGGGTCATAATAGTCGCTGCCGTAAGTaGACCCTACGGCACTGTAGTTTCCATCCTCCGCCA +
Preference number: 3 (lower is better)
Translates to: WALTGHNSRCRK*TLRHCSFHPPP
Trigger: TGGCGGAGGATGGAAACTACAGTGCCGTAGGGTTCACTTACGGCAGCGACTATTATGACCCGTCAGAGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR GCA 72 bp TCGAGCTTGCTTGGCCTTCAGCATGATCTCGAACTGTaGTCCCTGCTTGCATACGAAGTTGGCTGTGCGCTC +
Preference number: 3 (lower is better)
Translates to: SSLLGLQHDLEL*SLLAYEVGCAL
Trigger: GAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCGAGATCATGCTGAAGGCCAAGCAAGCTCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 72 bp AGGGCTTCATCAGCTCTTCCAGGCGGCTGCTCTTCTTaGAAGCAAAGAGAGACGGGTGCAGGTAACTCCCAT +
Preference number: 3 (lower is better)
Translates to: RASSALPGGCSS*KQRETGAGNSH
Trigger: ATGGGAGTTACCTGCACCCGTCTCTCTTTGCTTCCAAGAAGAGCAGCCGCCTGGAAGAGCTGATGAAGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR TCA 72 bp CTCCCTGCTTGCATACGAAGTTGGCTGTGCGCTCAATaGTGGCATGCATTTTGGCTGTTGGTGGCAGCTCCA +
Preference number: 3 (lower is better)
Translates to: LPACIRSWLCAQ*WHAFWLLVAAP
Trigger: TGGAGCTGCCACCAACAGCCAAAATGCATGCCATCATTGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 72 bp TGTTTGAAGGCCTTTCTGGAGGCTTCCCTTCCAATATaGGCAGAGTTCTACCACCAACCAGCAGAGGACAGG +
Preference number: 3 (lower is better)
Translates to: CLKAFLEASLPI*AEFYHQPAEDR
Trigger: CCTGTCCTCTGCTGGTTGGTGGTAGAACTCTGCCCATATTGGAAGGGAAGCCTCCAGAAAGGCCTTCAAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR TCA 72 bp CGAACTGTGAGTTTCGAGCTTGCTTGGCCTTCAGCATaGTCTCGAACTGTGCTCCCTGCTTGCATACGAAGT +
Preference number: 3 (lower is better)
Translates to: RTVSFELAWPSA*SRTVLPACIRS
Trigger: ACTTCGTATGCAAGCAGGGAGCACAGTTCGAGATCATGCTGAAGGCCAAGCAAGCTCGAAACTCACAGTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR GCA 72 bp TCAAACCGTAGGAAGTCGAACTGTGAGTTTCGAGCTTaGTTGGCCTTCAGCATGATCTCGAACTGTGCTCCC +
Preference number: 3 (lower is better)
Translates to: SNRRKSNCEFRA*LAFSMISNCAP
Trigger: GGGAGCACAGTTCGAGATCATGCTGAAGGCCAAGCAAGCTCGAAACTCACAGTTCGACTTCCTACGGTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CCA 72 bp AGGTACCATCTGGCAACATGTAGTAGCTGTAGTACATaGCTGCCACAGTTGAGTCTGCCGTGTACTCCACCT +
Preference number: 3 (lower is better)
Translates to: RYHLATCSSCST*LPQLSLPCTPP
Trigger: AGGTGGAGTACACGGCAGACTCAACTGTGGCAGCCATGTACTACAGCTACTACATGTTGCCAGATGGTACCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CAA 90 bp CGTAGTAGGCGTTGTACTGGTGCCAGGGCTGAAGAAATTCAAATCTTTGATCGTGAGTTTCGAGCTTGCTaGGCCTTCAGCATGATCTCG +
Preference number: 3 (lower is better)
Translates to: RSRRCTGARAEEIQIFDREFRAC*AFSMIS
Trigger: CGAGATCATGCTGAAGGCCAAGCAAGCTCGAAACTC...ACGATCAAAGATTTGAATTTCTTCAGCCCTGGCACCAGTACAACGCCTACTACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR-3UTR CAA 90 bp TTAAGGTTTGTAAGAACAACGCTGCTTTCCTTTTACGTTCAGCCTGAAGCTGCTTGCTTGCATACGAAGTaGGCTGTGCGCTCAATGATG +
Preference number: 3 (lower is better)
Translates to: LRFVRTTLLSFYVQPEAACLHTK*AVRSMM
Trigger: CATCATTGAGCGCACAGCCAACTTCGTATGCAAGCA...AGCAGCTTCAGGCTGAACGTAAAAGGAAAGCAGCGTTGTTCTTACAAACCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR GCA 72 bp TCTTTTTCTCTCTTTCTTCTTCTCTTGGTGGATCTCTaGATCTGTTTGAAGGCCTTTCTGGAGGCTTCCCTT +
Preference number: 3 (lower is better)
Translates to: SFSLFLLLLVDL*ICLKAFLEASL
Trigger: AAGGGAAGCCTCCAGAAAGGCCTTCAAACAGATGCAGAGATCCACCAAGAGAAGAAGAAAGAGAGAAAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR TCA 72 bp GGGAAAATTCTCTGTGGCTCTACATATAAACTATCCTaGGGTCCTCTCAGAACGCAAAGACTCCTGTTTTTC +
Preference number: 3 (lower is better)
Translates to: GKILCGSTYKLS*GPLRTQRLLFF
Trigger: GAAAAACAGGAGTCTTTGCGTTCTGAGAGGACCTCAGGATAGTTTATATGTAGAGCCACAGAGAATTTTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200500.2
CDS-3UTR TCA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTGCTGGCCGAGTGGGCTaGGTGGGCCGAGGGACGCTG +
Preference number: 4 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAAAGRVG*VGRGTL
Trigger: CAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGC...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGGGCGGCAGCAGGGCTaGGGTTGGCCACGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGGRQQG*GWPRCL
Trigger: CAAGCAGCGTGGCCAACCCCAGCCCTGCTGCCGCCC...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
72% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTGGGTCCTTTTCCTGCTaGCCCCAGGGCTGCCGCTCA +
Preference number: 4 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAAGSFSC*PQGCRS
Trigger: TGAGCGGCAGCCCTGGGGTCAGCAGGAAAAGGACCC...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTTGCTGTCCCTGTTCCTaGGCCAAAGCCCGCTCGTCG +
Preference number: 4 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAACCPCS*AKARSS
Trigger: CGACGAGCGGGCTTTGGCCCAGGAACAGGGACAGCA...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp CTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGTGGTTCAGCTGTGGTTaGGGGTGGAGGAGGTGTGGT +
Preference number: 4 (lower is better)
Translates to: LWPQPGPQPCCSPGAAPGWFSCG*GWRRCG
Trigger: ACCACACCTCCTCCACCCCCAACCACAGCTGAACCA...CCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTGGCTTGGAAGACGAGTaGTACTTGGGAGAGCGGGAC +
Preference number: 4 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRGLEDE*YLGERD
Trigger: GTCCCGCTCTCCCAAGTACCACTCGTCTTCCAAGCC...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGCCCCCATCCAGGGGATaGGGTGCTGTCCCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: SSPAPVATARATAVLFAGPPSRG*GAVPVP
Trigger: AGGAACAGGGACAGCACCTCATCCCCTGGATGGGGG...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTCTCTTCCGTGGGCTCTaGCGGGTCATAATAGTCGCT +
Preference number: 4 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRLFRGL*RVIIVA
Trigger: AGCGACTATTATGACCCGTCAGAGCCCACGGAAGAG...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp CTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGGCTTGGCCTTCAGCATaGTCTCGAACTGTGCTCCCT +
Preference number: 4 (lower is better)
Translates to: LWPQPGPQPCCSPGAAPGAWPSA*SRTVLP
Trigger: AGGGAGCACAGTTCGAGATCATGCTGAAGGCCAAGC...CCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp CTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGAAGCTGCTTCTCCTTTaGTTCCTTGGACGCCTGGGC +
Preference number: 4 (lower is better)
Translates to: LWPQPGPQPCCSPGAAPGKLLLL*FLGRLG
Trigger: GCCCAGGCGTCCAAGGAATCAAAGGAGAAGCAGCTT...CCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp AGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGTCCACGGTGCTCTTaGTGGACCCAGCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: STCGHSQGHSRAVRRGLLRPRCS*WTQPPS
Trigger: AGAAGGAGGCTGGGTCCAGCAAGAGCACCGTGGACG...GAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp TTCTTGGGGACCGAGACCGTGACCTTGACCGCCGCACTGTCCGGTAGGCACTGGCTTTCCTCTCCGGCTTaGCACGGCCCCCGCCGGCAC +
Preference number: 4 (lower is better)
Translates to: FLGTETVTLTAALSGRHWLSSPA*HGPRRH
Trigger: GTGCCGGCGGGGGCCGTGCCAAGCCGGAGAGGAAAG...CCAGTGCCTACCGGACAGTGCGGCGGTCAAGGTCACGGTCTCGGTCCCCAAGAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR CCA 90 bp CTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGGGCGGCTGCTCTTCTTaGAAGCAAAGAGAGACGGGT +
Preference number: 4 (lower is better)
Translates to: LWPQPGPQPCCSPGAAPGGGCSS*KQRETG
Trigger: ACCCGTCTCTCTTTGCTTCCAAGAAGAGCAGCCGCC...CCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAG
68% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTGGGTGCTGTAGTAAGTaGCCACATCGATCCCAGGTG +
Preference number: 4 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRGCCSK*PHRSQV
Trigger: CACCTGGGATCGATGTGGCCACTTACTACAGCACCC...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGAGCTGTGGTTGGGGGTaGAGGAGGTGTGGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: SSPAPVATARATAVLFAGSCGWG*RRCGPR
Trigger: CCTGGGACCACACCTCCTCCACCCCCAACCACAGCT...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp AGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCCACGGTGCTCTTGCTaGACCCAGCCTCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: STCGHSQGHSRAVRRGLLPRCSC*TQPPSS
Trigger: GGAAGAAGGAGGCTGGGTCCAGCAAGAGCACCGTGG...GAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGAGAGGTCATGCAGGTaGCCACGCCCGTCGTATCTG +
Preference number: 4 (lower is better)
Translates to: SSPAPVATARATAVLFAGERSCR*PRPSYL
Trigger: CAGATACGACGGGCGTGGTCACCTGCATGACCTCTC...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp AGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCATGGCTGCCACAGTTaGGTCTGCCGTGTACTCCAC +
Preference number: 4 (lower is better)
Translates to: STCGHSQGHSRAVRRGLLHGCHS*VCRVLH
Trigger: GTGGAGTACACGGCAGACTCAACTGTGGCAGCCATG...GAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCGTCTCTCAGGAGAGTaGGCTCTCCTTCTTGGGGAC +
Preference number: 4 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAARLSGE*ALLLGD
Trigger: GTCCCCAAGAAGGAGAGCTCACTCTCCTGAGAGACG...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp CTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGACTGTGCTCCCTGCTTaGATACGAAGTTGGCTGTGC +
Preference number: 4 (lower is better)
Translates to: LWPQPGPQPCCSPGAAPGTVLPA*IRSWLC
Trigger: GCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGT...CCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTTGCTTGGTTCAGCTGTaGTTGGGGGTGGAGGAGGTG +
Preference number: 4 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAACLVQL*LGVEEV
Trigger: CACCTCCTCCACCCCCAACCACAGCTGAACCAAGCA...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTCAACAGCGGTTTCTGTaGGAGCCTCTTCAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRQQRFL*EPLQLL
Trigger: CAACAGCTGAAGAGGCTCCCACAGAAACCGCTGTTG...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTGATTCCTTGGACGCCTaGGCTAGCTTTTCCCGGGCA +
Preference number: 4 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAADSLDA*ASFSRA
Trigger: TGCCCGGGAAAAGCTAGCCCAGGCGTCCAAGGAATC...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp CTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGTCGAACTGTGCTCCCTaGTTGCATACGAAGTTGGCT +
Preference number: 4 (lower is better)
Translates to: LWPQPGPQPCCSPGAAPGSNCAP*LHTKLA
Trigger: AGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCGA...CCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTTCTAGCGACGTACTCTaGCAGCTTGTCAATCACAGG +
Preference number: 4 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRSSDVL*QLVNHR
Trigger: CCTGTGATTGACAAGCTGGCAGAGTACGTCGCTAGA...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGAGTCTCGGTTCCACGTaGCGTACTCAGCATCGTACG +
Preference number: 4 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGSLGST*RTQHRT
Trigger: CGTACGATGCTGAGTACGCCACGTGGAACCGAGACT...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTCCTCCTCTTCCGTaGGCTCTGACGGGTCATAAT +
Preference number: 4 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGAPPLP*ALTGHN
Trigger: ATTATGACCCGTCAGAGCCCACGGAAGAGGAGGAGC...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTCTGCTTGTGCTTTCCTaGCACTCCCTGCTTTCTTCA +
Preference number: 4 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRLLVLS*HSLLSS
Trigger: TGAAGAAAGCAGGGAGTGCCAGGAAAGCACAAGCAG...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
3UTR CAA 72 bp AGTGAGCTCTCCTTCTTGGGGACCGAGACCGTGACCTaGACCGCCGCACTGTCCGGTAGGCACTGGGCAGGG +
Preference number: 4 (lower is better)
Translates to: SELSFLGTETVT*TAALSGRHWAG
Trigger: CCCTGCCCAGTGCCTACCGGACAGTGCGGCGGTCAAGGTCACGGTCTCGGTCCCCAAGAAGGAGAGCTCACT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR TCA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGGAGTGCTTTGCTTTTaGGTGGGATCTAGACCTGGG +
Preference number: 4 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGGVLCF*VGSRPG
Trigger: CCCAGGTCTAGATCCCACTCAAAAGCAAAGCACTCC...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
64% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGCGTCGCGGAACAACTTaGAGGCATAGCCGAAAACCA +
Preference number: 4 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGRRGTT*RHSRKP
Trigger: TGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACG...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTTTGTATTCTTCCTCTTaGCTTGCCTCCTCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRLYSSS*LASSSS
Trigger: GCTTGAGGAGGAGGCAAGGCAAGAGGAAGAATACAA...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp CTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGTGTGAGTTTCGAGCTTaGTTGGCCTTCAGCATGATC +
Preference number: 4 (lower is better)
Translates to: LWPQPGPQPCCSPGAAPGCEFRA*LAFSMI
Trigger: GATCATGCTGAAGGCCAAGCAAGCTCGAAACTCACA...CCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp AGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCTCCAGCAGGAAGGGTaGTGTAGTAAGTGGCCACAT +
Preference number: 4 (lower is better)
Translates to: STCGHSQGHSRAVRRGLLLQQEG*CSKWPH
Trigger: ATGTGGCCACTTACTACAGCACCCTTCCTGCTGGAG...GAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp CTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGTTTCCTGGCACTCCCTaGTTTCTTCATCCTCTTCAC +
Preference number: 4 (lower is better)
Translates to: LWPQPGPQPCCSPGAAPGFPGTP*FLHPLH
Trigger: GTGAAGAGGATGAAGAAAGCAGGGAGTGCCAGGAAA...CCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTGCACTGGGCAGGGAGTaGTTTGCTTTTGAGTGGGAT +
Preference number: 4 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAAALGRE*FAFEWD
Trigger: ATCCCACTCAAAAGCAAAGCACTCCCTGCCCAGTGC...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGCTCTTCCAGGCGGCTaGTCTTCTTGGAAGCAAAGA +
Preference number: 4 (lower is better)
Translates to: SSPAPVATARATAVLFAGALPGG*SSWKQR
Trigger: TCTTTGCTTCCAAGAAGAGCAGCCGCCTGGAAGAGC...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTATCTCTGCATCTGTTTaGAGGCCTTTCTGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAAISASV*RPFWRL
Trigger: AAGCCTCCAGAAAGGCCTTCAAACAGATGCAGAGAT...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp CCTTTTCCTGCTGACCCCAGGGCTGCCGCTCATCCGGTAGGCTGTAGGGACACTATCCAGGGGATGAGGTaGTGTCCCTGTTCCTGGGCC +
Preference number: 4 (lower is better)
Translates to: PFPADPRAAAHPVGCRDTIQGMR*CPCSWA
Trigger: GGCCCAGGAACAGGGACAGCACCTCATCCCCTGGAT...AGTGTCCCTACAGCCTACCGGATGAGCGGCAGCCCTGGGGTCAGCAGGAAAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR GCA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTTCAAGCAAGTCCGTATaGAAGGCTAAATACCTCTCT +
Preference number: 4 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRSSKSV*KAKYLS
Trigger: AGAGAGGTATTTAGCCTTGCATACGGACTTGCTTGA...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGCGCTCAATGATGGCATaGATTTTGGCTGTTGGTGGC +
Preference number: 4 (lower is better)
Translates to: SSPAPVATARATAVLFAGRSMMA*ILAVGG
Trigger: GCCACCAACAGCCAAAATGCATGCCATCATTGAGCG...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGTCTTCTCCTCGTTCTTaGTCTCAGCTAGCACCGTGT +
Preference number: 4 (lower is better)
Translates to: SSPAPVATARATAVLFAGSSPRS*SQLAPC
Trigger: ACACGGTGCTAGCTGAGAGCAAGAACGAGGAGAAGA...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGAGCTTTTGTTTTGCTTaGTTGGCTTCCAGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGSFCFA*LASSSS
Trigger: GGAGGAGCTGGAAGCCAAGCAAGCAAAACAAAAGCT...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGATGCATTTTGGCTGTTaGTGGCAGCTCCACATCAGA +
Preference number: 4 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGMHFGC*WQLHIR
Trigger: TCTGATGTGGAGCTGCCACCAACAGCCAAAATGCAT...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp AGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCTCTCCTTTGATTCCTTaGACGCCTGGGCTAGCTTTT +
Preference number: 4 (lower is better)
Translates to: STCGHSQGHSRAVRRGLLSPLIP*TPGLAF
Trigger: AAAAGCTAGCCCAGGCGTCCAAGGAATCAAAGGAGA...GAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTTCCCTTCCAATATaGGCAGAGTTCTACCACCAA +
Preference number: 4 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGASLPI*AEFYHQ
Trigger: TTGGTGGTAGAACTCTGCCCATATTGGAAGGGAAGC...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGTTCTTCTTCTTCTCGTaGGGACTTCTGGAACGGGTC +
Preference number: 4 (lower is better)
Translates to: SSPAPVATARATAVLFAGFFFFS*GLLERV
Trigger: GACCCGTTCCAGAAGTCCCCACGAGAAGAAGAAGAA...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp TTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGCGCCGAGTGGGCTGAGTaGGCCGAGGGACGCTGTGCG +
Preference number: 4 (lower is better)
Translates to: LQKPLTDPGVGLENLDSCAEWAE*AEGRCA
Trigger: CGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGC...GCAGCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp TGTAGGTCGGCAGAGCTCACAGCTCAGCTTCTGACGTCTGGACTGTGGCTGCTCCCCCTGGAGCGTTCCTaGGAGGAACCTCGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: CRSAELTAQLLTSGLWLLPLERS*EEPRLS
Trigger: GGAGAGCCGAGGTTCCTCCCAGGAACGCTCCAGGGG...GAGCAGCCACAGTCCAGACGTCAGAAGCTGAGCTGTGAGCTCTGCCGACCTACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp CTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCATTTTCTTTGGCTTTaGTGGCAAAGCTTATTGGAG +
Preference number: 4 (lower is better)
Translates to: LWPQPGPQPCCSPGAAPGHFLWL*WQSLLE
Trigger: CTCCAATAAGCTTTGCCATCAAAGCCAAAGAAAATG...CCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp AGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCTTCGTTGTCAGAGGTTaGCCCAGACTTTTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: STCGHSQGHSRAVRRGLLFVVRG*PRLFLL
Trigger: GAGAAGAAAAAGTCTGGGCCAACCTCTGACAACGAA...GAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGAGTAGCTGTAGTACATaGCTGCCACAGTTGAGTCTG +
Preference number: 4 (lower is better)
Translates to: SSPAPVATARATAVLFAGSSCST*LPQLSL
Trigger: CAGACTCAACTGTGGCAGCCATGTACTACAGCTACT...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCAGTAGGTACCATCTaGCAACATGTAGTAGCTGTA +
Preference number: 4 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGAVGTI*QHVVAV
Trigger: TACAGCTACTACATGTTGCCAGATGGTACCTACTGC...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGTGCTTTGCTTTTGAGTaGGATCTAGACCTGGGCTTG +
Preference number: 4 (lower is better)
Translates to: SSPAPVATARATAVLFAGCFAFE*DLDLGL
Trigger: CAAGCCCAGGTCTAGATCCCACTCAAAAGCAAAGCA...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp TGTAGGTCGGCAGAGCTCACAGCTCAGCTTCTGACGTCTGGACTGTGGCTGCTCCCACAGGAGAGATGCTaGCCGAGTGGGCTGAGTGGG +
Preference number: 4 (lower is better)
Translates to: CRSAELTAQLLTSGLWLLPQERC*PSGLSG
Trigger: CCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGG...GAGCAGCCACAGTCCAGACGTCAGAAGCTGAGCTGTGAGCTCTGCCGACCTACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp GGCAGCAGCAGCAAGGCGGTCCTCCAGCTTTTGTTTTGCTTGCTTGGCTTCCAGCCCCCATCCAGGGGATaGGGTGCTGTCCCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: GSSSKAVLQLLFCLLGFQPPSRG*GAVPVP
Trigger: AGGAACAGGGACAGCACCTCATCCCCTGGATGGGGG...CTGGAAGCCAAGCAAGCAAAACAAAAGCTGGAGGACCGCCTTGCTGCTGCTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR TCA 90 bp TGTAGGTCGGCAGAGCTCACAGCTCAGCTTCTGACGTCTGGACTGTGGCTGCTCGGGTGGGGCTGGAGCTaGGCTGTCAGCTTGTGCTTT +
Preference number: 4 (lower is better)
Translates to: CRSAELTAQLLTSGLWLLGWGWS*AVSLCF
Trigger: AAAGCACAAGCTGACAGCTCAGCTCCAGCCCCACCC...GAGCAGCCACAGTCCAGACGTCAGAAGCTGAGCTGTGAGCTCTGCCGACCTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp CGGGCAGCAGCAGCAAGGCGGTCCTCCAGCTTTTGTTTTGCTTGCTTGGCTTCCCGTCCACGGTGCTCTTaGTGGACCCAGCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: RAAAARRSSSFCFACLASRPRCS*WTQPPS
Trigger: AGAAGGAGGCTGGGTCCAGCAAGAGCACCGTGGACG...GGAAGCCAAGCAAGCAAAACAAAAGCTGGAGGACCGCCTTGCTGCTGCTGCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199215.2
CDS-3UTR CCA 90 bp AATTTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCCTTTCCTCTCCGGCTTaGCACGGCCCCCGCCGGCAC +
Preference number: 4 (lower is better)
Translates to: NLQKPLTDPGVGLENLDSLSSPA*HGPRRH
Trigger: GTGCCGGCGGGGGCCGTGCCAAGCCGGAGAGGAAAG...GCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAAATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp TTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGCAGCAGGTGTGCCATCTaGAGTGGGTGGGGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: LQKPLTDPGVGLENLDSCSRCAI*SGWGWS
Trigger: GCTCCAGCCCCACCCACTGCAGATGGCACACCTGCT...GCAGCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp TTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGCCCCAGGTGGGGGTGGTaGCAGGCAGTAGGTACCATC +
Preference number: 4 (lower is better)
Translates to: LQKPLTDPGVGLENLDSCPRWGW*QAVGTI
Trigger: GATGGTACCTACTGCCTGGCACCACCCCCACCTGGG...GCAGCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp TTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGCGATCCCAGGTGGGGGTaGTGCCAGGCAGTAGGTACC +
Preference number: 4 (lower is better)
Translates to: LQKPLTDPGVGLENLDSCDPRWG*CQAVGT
Trigger: GGTACCTACTGCCTGGCACCACCCCCACCTGGGATC...GCAGCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGATTTATAGTAGGGGTTaGGGTAGTGATCAAACCGTA +
Preference number: 4 (lower is better)
Translates to: SSPAPVATARATAVLFAGIYSRG*GSDQTV
Trigger: TACGGTTTGATCACTACCTCAACCCCTACTATAAAT...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp AGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCAGAAATTCAAATCTTTaGTCGTTCTTGGCTCGAACA +
Preference number: 4 (lower is better)
Translates to: STCGHSQGHSRAVRRGLLRNSNL*SFLART
Trigger: TGTTCGAGCCAAGAACGATCAAAGATTTGAATTTCT...GAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp TTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGCTGGCCACGCTGCTTGTaGTTTCCTGGCACTCCCTGC +
Preference number: 4 (lower is better)
Translates to: LQKPLTDPGVGLENLDSCWPRCL*FPGTPC
Trigger: GCAGGGAGTGCCAGGAAAGCACAAGCAGCGTGGCCA...GCAGCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp CGGGCAGCAGCAGCAAGGCGGTCCTCCAGCTTTTGTTTTGCTTGCTTGGCTTCCAGTCTCGGTTCCACGTaGCGTACTCAGCATCGTACG +
Preference number: 4 (lower is better)
Translates to: RAAAARRSSSFCFACLASSLGST*RTQHRT
Trigger: CGTACGATGCTGAGTACGCCACGTGGAACCGAGACT...GGAAGCCAAGCAAGCAAAACAAAAGCTGGAGGACCGCCTTGCTGCTGCTGCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR CCA 90 bp TTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGCCACATCGATCCCAGGTaGGGGTGGTGCCAGGCAGTA +
Preference number: 4 (lower is better)
Translates to: LQKPLTDPGVGLENLDSCHIDPR*GWCQAV
Trigger: TACTGCCTGGCACCACCCCCACCTGGGATCGATGTG...GCAGCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp TGGGGTTGGCCACGCTGCTTGTGCTTTCCTGGCACTCCCTGCTTTCTTCATCCTCCACGGTGCTCTTGCTaGACCCAGCCTCCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: WGWPRCLCFPGTPCFLHPPRCSC*TQPPSF
Trigger: GAAAGAAGGAGGCTGGGTCCAGCAAGAGCACCGTGG...AGGATGAAGAAAGCAGGGAGTGCCAGGAAAGCACAAGCAGCGTGGCCAACCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199215.2
CDS-3UTR GCA 90 bp TCCCGGGCAGCAGCAGCAAGGCGGTCCTCCAGCTTTTGTTTTGCTTGCTTGGCTCGTCGCGGAACAACTTaGAGGCATAGCCGAAAACCA +
Preference number: 4 (lower is better)
Translates to: SRAAAARRSSSFCFACLARRGTT*RHSRKP
Trigger: TGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACG...AGCCAAGCAAGCAAAACAAAAGCTGGAGGACCGCCTTGCTGCTGCTGCCCGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR GCA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGAAGTTTTCCAACTTCTaGTTCTGGAAGAGGATTTTT +
Preference number: 4 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGKFSNF*FWKRIF
Trigger: AAAAATCCTCTTCCAGAAGCAGAAGTTGGAAAACTT...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp CCCTGCTTGCATACGAAGTTGGCTGTGCGCTCAATGATGGCATGCATTTTGGCTGAGAGGTCATGCAGGTaGCCACGCCCGTCGTATCTG +
Preference number: 4 (lower is better)
Translates to: PCLHTKLAVRSMMACILAERSCR*PRPSYL
Trigger: CAGATACGACGGGCGTGGTCACCTGCATGACCTCTC...AGCCAAAATGCATGCCATCATTGAGCGCACAGCCAACTTCGTATGCAAGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR TCA 90 bp AATTTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCGCAGAGGACAGGGCATaGCACCAGTGTCCTCAACCC +
Preference number: 4 (lower is better)
Translates to: NLQKPLTDPGVGLENLDSAEDRA*HQCPQP
Trigger: GGGTTGAGGACACTGGTGTCATGCCCTGTCCTCTGC...GCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAAATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp AATTTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCATCCAGGGGATGAGGTaGTGTCCCTGTTCCTGGGCC +
Preference number: 4 (lower is better)
Translates to: NLQKPLTDPGVGLENLDSIQGMR*CPCSWA
Trigger: GGCCCAGGAACAGGGACAGCACCTCATCCCCTGGAT...GCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAAATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR TCA 90 bp TATCCTGAGGTCCTCTCAGAACGCAAAGACTCCTGTTTTTCCAATCCACTGGGTCCCCCATCCAGGGGATaGGGTGCTGTCCCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: YPEVLSERKDSCFSNPLGPPSRG*GAVPVP
Trigger: AGGAACAGGGACAGCACCTCATCCCCTGGATGGGGG...ACCCAGTGGATTGGAAAAACAGGAGTCTTTGCGTTCTGAGAGGACCTCAGGATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000200500.2
3UTR CAA 72 bp CTTCAACAGCGGTTTCTGTGGGAGCCTCTTCAGCTGTaGATGCTGCCTGTGTGCTACCGCCTCCTTCTTTCT +
Preference number: 4 (lower is better)
Translates to: LQQRFLWEPLQL*MLPVCYRLLLS
Trigger: AGAAAGAAGGAGGCGGTAGCACACAGGCAGCATCAACAGCTGAAGAGGCTCCCACAGAAACCGCTGTTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CAA 72 bp GAGTGCTTTGCTTTTGAGTGGGATCTAGACCTGGGCTaGGAAGACGAGTGGTACTTGGGAGAGCGGGACCTT +
Preference number: 4 (lower is better)
Translates to: ECFAFEWDLDLG*EDEWYLGERDL
Trigger: AAGGTCCCGCTCTCCCAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATCCCACTCAAAAGCAAAGCACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR CCA 90 bp TTCTTGGCTCGAACACTGGTCTCAAATTTAAGGCCGTTTCTAGCGACGTACTCTTGCTGTCCCTGTTCCTaGGCCAAAGCCCGCTCGTCG +
Preference number: 4 (lower is better)
Translates to: FLARTLVSNLRPFLATYSCCPCS*AKARSS
Trigger: CGACGAGCGGGCTTTGGCCCAGGAACAGGGACAGCA...AGAGTACGTCGCTAGAAACGGCCTTAAATTTGAGACCAGTGTTCGAGCCAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR CCA 90 bp GTGGCTCTACATATAAACTATCCTGAGGTCCTCTCAGAACGCAAAGACTCCTGTTGCTGTCCCTGTTCCTaGGCCAAAGCCCGCTCGTCG +
Preference number: 4 (lower is better)
Translates to: VALHINYPEVLSERKDSCCCPCS*AKARSS
Trigger: CGACGAGCGGGCTTTGGCCCAGGAACAGGGACAGCA...ACAGGAGTCTTTGCGTTCTGAGAGGACCTCAGGATAGTTTATATGTAGAGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200500.2
CDS-3UTR CCA 90 bp GGGCTGGGGTTGGCCACGCTGCTTGTGCTTTCCTGGCACTCCCTGCTTTCTTCAATCTTTGATCGTTCTTaGCTCGAACACTGGTCTCAA +
Preference number: 4 (lower is better)
Translates to: GLGLATLLVLSWHSLLSSIFDRS*LEHWSQ
Trigger: TTGAGACCAGTGTTCGAGCCAAGAACGATCAAAGAT...TGAAGAAAGCAGGGAGTGCCAGGAAAGCACAAGCAGCGTGGCCAACCCCAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199215.2
CDS-3UTR CCA 90 bp TTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGCCTCCTGGGTAAGCTGTaGTTTCTTCTCCTCTACAGC +
Preference number: 4 (lower is better)
Translates to: LQKPLTDPGVGLENLDSCLLGKL*FLLLYS
Trigger: GCTGTAGAGGAGAAGAAACCACAGCTTACCCAGGAG...GCAGCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
3UTR CAA 72 bp TTGGCCTTCAGCATGATCTCGAACTGTGCTCCCTGCTaGCATACGAAGTTGGCTGTGCGCTCAATGATGGCA +
Preference number: 4 (lower is better)
Translates to: LAFSMISNCAPC*HTKLAVRSMMA
Trigger: TGCCATCATTGAGCGCACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTTCGAGATCATGCTGAAGGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CAA 72 bp AACCGTAGGAAGTCGAACTGTGAGTTTCGAGCTTGCTaGGCCTTCAGCATGATCTCGAACTGTGCTCCCTGC +
Preference number: 4 (lower is better)
Translates to: NRRKSNCEFRAC*AFSMISNCAPC
Trigger: GCAGGGAGCACAGTTCGAGATCATGCTGAAGGCCAAGCAAGCTCGAAACTCACAGTTCGACTTCCTACGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
3UTR CAA 72 bp CTTTCCTTTTACGTTCAGCCTGAAGCTGCTTCTCCTTaGATTCCTTGGACGCCTGGGCTAGCTTTTCCCGGG +
Preference number: 4 (lower is better)
Translates to: LSFYVQPEAASP*IPWTPGLAFPG
Trigger: CCCGGGAAAAGCTAGCCCAGGCGTCCAAGGAATCAAAGGAGAAGCAGCTTCAGGCTGAACGTAAAAGGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000196698.5
ENSMUST00000199215.2
CDS-3UTR TCA 90 bp AGCAGGGCTGGGGTTGGCCACGCTGCTTGTGCTTTCCTGGCACTCCCTGCTTTCAGAAATTCAAATCTTTaGTCGTTCTTGGCTCGAACA +
Preference number: 4 (lower is better)
Translates to: SRAGVGHAACAFLALPAFRNSNL*SFLART
Trigger: TGTTCGAGCCAAGAACGATCAAAGATTTGAATTTCT...GAAAGCAGGGAGTGCCAGGAAAGCACAAGCAGCGTGGCCAACCCCAGCCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199215.2
CDS-3UTR TCA 90 bp AATTTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGTCATCGTCCAGCTTaGCACGGTTTTTCTCCAAGG +
Preference number: 4 (lower is better)
Translates to: NLQKPLTDPGVGLENLDSCHRPA*HGFSPR
Trigger: CCTTGGAGAAAAACCGTGTCAAGCTGGACGATGACA...GCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp CCTCCTCAAGCAAGTCCGTATGCAAGGCTAAATACCTCTCTTCATCACACAGCGCGTCGCGGAACAACTTaGAGGCATAGCCGAAAACCA +
Preference number: 4 (lower is better)
Translates to: PPQASPYARLNTSLHHTARRGTT*RHSRKP
Trigger: TGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACG...CGCTGTGTGATGAAGAGAGGTATTTAGCCTTGCATACGGACTTGCTTGAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200500.2
CDS-3UTR CCA 90 bp AATTTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTTTGTTTTGCTTGCTTaGCTTCCAGCTCCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: NLQKPLTDPGVGLENLDSFVLLA*LPAPPG
Trigger: CCCAGGAGGAGCTGGAAGCCAAGCAAGCAAAACAAA...GCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
3UTR CAA 72 bp TCAGAGGTTGGCCCAGACTTTTTCTTCTCCTCGTTCTaGCTCTCAGCTAGCACCGTGTACCGTCCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: SEVGPDFFFSSF*LSASTVYRPSF
Trigger: GAAAGAAGGACGGTACACGGTGCTAGCTGAGAGCAAGAACGAGGAGAAGAAAAAGTCTGGGCCAACCTCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR TCA 90 bp TTCCAGCTCCTCCTGGGTAAGCTGTGGTTTCTTCTCCTCTACAGCCACGGAGGGCATTTTCTTTGGCTTTaGTGGCAAAGCTTATTGGAG +
Preference number: 4 (lower is better)
Translates to: FQLLLGKLWFLLLYSHGGHFLWL*WQSLLE
Trigger: CTCCAATAAGCTTTGCCATCAAAGCCAAAGAAAATG...CCCTCCGTGGCTGTAGAGGAGAAGAAACCACAGCTTACCCAGGAGGAGCTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199215.2
CDS-3UTR GCA 90 bp AATTTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCCTCCAGCTTTTGTTTTaGTTGCTTGGCTTCCAGCTC +
Preference number: 4 (lower is better)
Translates to: NLQKPLTDPGVGLENLDSLQLLF*LLGFQL
Trigger: GAGCTGGAAGCCAAGCAAGCAAAACAAAAGCTGGAG...GCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp TTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGCATCTTTGATCGTTCTTaGCTCGAACACTGGTCTCAA +
Preference number: 4 (lower is better)
Translates to: LQKPLTDPGVGLENLDSCIFDRS*LEHWSQ
Trigger: TTGAGACCAGTGTTCGAGCCAAGAACGATCAAAGAT...GCAGCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR GCA 90 bp AATTTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCGATCCTGAGTTATTTTaGTCTGCACAGAGGAGACGA +
Preference number: 4 (lower is better)
Translates to: NLQKPLTDPGVGLENLDSDPELF*SAQRRR
Trigger: TCGTCTCCTCTGTGCAGAGCAAAATAACTCAGGATC...GCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CCA 90 bp GGGTTGGCCACGCTGCTTGTGCTTTCCTGGCACTCCCTGCTTTCTTCATCCTCTGATGGCAAAGCTTATTaGAGCAAAAGAAGCTTTTAC +
Preference number: 4 (lower is better)
Translates to: GLATLLVLSWHSLLSSSSDGKAY*SKRSFY
Trigger: GTAAAAGCTTCTTTTGCTCCAATAAGCTTTGCCATC...AGAGGATGAAGAAAGCAGGGAGTGCCAGGAAAGCACAAGCAGCGTGGCCAACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199215.2
CDS-3UTR CCA 90 bp AAGCTGGGAAAATTCTCTGTGGCTCTACATATAAACTATCCTGAGGTCCTCTCAAGTCTCGGTTCCACGTaGCGTACTCAGCATCGTACG +
Preference number: 4 (lower is better)
Translates to: KLGKFSVALHINYPEVLSSLGST*RTQHRT
Trigger: CGTACGATGCTGAGTACGCCACGTGGAACCGAGACT...TGAGAGGACCTCAGGATAGTTTATATGTAGAGCCACAGAGAATTTTCCCAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200500.2
CDS-3UTR CCA 90 bp AATTTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCGATGGCAAAGCTTATTaGAGCAAAAGAAGCTTTTAC +
Preference number: 4 (lower is better)
Translates to: NLQKPLTDPGVGLENLDSDGKAY*SKRSFY
Trigger: GTAAAAGCTTCTTTTGCTCCAATAAGCTTTGCCATC...GCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCCTTTCCTCTCCGGCTaGGCACGGCCCCCGCCGGCA +
Preference number: 5 (lower is better)
Translates to: LWPQPGPQPCCSPGAAPGPFLSG*ARPPPA
Trigger: TGCCGGCGGGGGCCGTGCCAAGCCGGAGAGGAAAGG...CCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp AGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCGCAGCAGGGCTGGGGTaGGCCACGCTGCTTGTGCTT +
Preference number: 5 (lower is better)
Translates to: STCGHSQGHSRAVRRGLLAAGLG*ATLLVL
Trigger: AAGCACAAGCAGCGTGGCCAACCCCAGCCCTGCTGC...GAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTACCGAGACCGTGACCTaGACCGCCGCACTGTCCGGT +
Preference number: 5 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAATETVT*TAALSG
Trigger: ACCGGACAGTGCGGCGGTCAAGGTCACGGTCTCGGT...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS GCA 90 bp CCCTGGAGCGTTCCTGGGAGGAACCTCGGCTCTCCACAGGAGAGATaGTGGCCGAGTGGGCTGAGTGGGCCGAGGGACGCTGTGCGGCCT +
Preference number: 5 (lower is better)
Translates to: PWSVPGRNLGSPQER*WPSGLSGPRDAVRP
Trigger: AGGCCGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGAGGTTCCTCCCAGGAACGCTCCAGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCTGTCGATGAGGATCTaGGGGTCCCCCATCCAGGGG +
Preference number: 5 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAALSMRI*GSPIQG
Trigger: CCCCTGGATGGGGGACCCCAAGATCCTCATCGACAG...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTAGGCGGCTGCTCTTCTaGGAAGCAAAGAGAGACGGG +
Preference number: 5 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRRRLLF*EAKRDG
Trigger: CCCGTCTCTCTTTGCTTCCAAGAAGAGCAGCCGCCT...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTGAAGCTGCTTCTCCTTaGATTCCTTGGACGCCTGGG +
Preference number: 5 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCREAASP*IPWTPG
Trigger: CCCAGGCGTCCAAGGAATCAAAGGAGAAGCAGCTTC...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGAGTGAGCTCTCCTTCTaGGGGACCGAGACCGTGACC +
Preference number: 5 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGSELSF*GTETVT
Trigger: GGTCACGGTCTCGGTCCCCAAGAAGGAGAGCTCACT...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS GCA 90 bp GGAACAACTTGCAGGCATAGCCGAAAACCAGAAGCTCCACCCGGTTaGCCCCAGTGCCGGTGCCGCCCGGCCCGGCCTCCTCCTTCACTC +
Preference number: 5 (lower is better)
Translates to: GTTCRHSRKPEAPPG*PQCRCRPARPPPSL
Trigger: GAGTGAAGGAGGAGGCCGGGCCGGGCGGCACCGGCACTGGGGGCAACCGGGTGGAGCTTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053737.9
ENSMUST00000196698.5
CDS CCA 90 bp TGGAGCGTTCCTGGGAGGAACCTCGGCTCTCCACAGGAGAGATGCTaGCCGAGTGGGCTGAGTGGGCCGAGGGACGCTGTGCGGCCTGTT +
Preference number: 5 (lower is better)
Translates to: WSVPGRNLGSPQERC*PSGLSGPRDAVRPV
Trigger: AACAGGCCGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGAGGTTCCTCCCAGGAACGCTCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTGCGGTCCTCCAGCTTTaGTTTTGCTTGCTTGGCTTC +
Preference number: 5 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRAVLQL*FCLLGF
Trigger: GAAGCCAAGCAAGCAAAACAAAAGCTGGAGGACCGC...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTGATCTAGACCTGGGCTaGGAAGACGAGTGGTACTTG +
Preference number: 5 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRDLDLG*EDEWYL
Trigger: CAAGTACCACTCGTCTTCCAAGCCCAGGTCTAGATC...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS TCA 90 bp GGAGGAACCTCGGCTCTCCACAGGAGAGATGCTGGCCGAGTGGGCTaGGTGGGCCGAGGGACGCTGTGCGGCCTGTTTACTCGGGGATGT +
Preference number: 5 (lower is better)
Translates to: GGTSALHRRDAGRVG*VGRGTLCGLFTRGC
Trigger: ACATCCCCGAGTAAACAGGCCGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGAGGTTCCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS CCA 90 bp GAACCTCGGCTCTCCACAGGAGAGATGCTGGCCGAGTGGGCTGAGTaGGCCGAGGGACGCTGTGCGGCCTGTTTACTCGGGGATGTTGAC +
Preference number: 5 (lower is better)
Translates to: EPRLSTGEMLAEWAE*AEGRCAACLLGDVD
Trigger: GTCAACATCCCCGAGTAAACAGGCCGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGAGGTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTTTTGTATTCTTCCTCTaGCCTTGCCTCCTCCTCAAG +
Preference number: 5 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRFVFFL*PCLLLK
Trigger: CTTGAGGAGGAGGCAAGGCAAGAGGAAGAATACAAA...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGCATGCATTTTGGCTGTaGGTGGCAGCTCCACATCAG +
Preference number: 5 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGHAFWL*VAAPHQ
Trigger: CTGATGTGGAGCTGCCACCAACAGCCAAAATGCATG...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTGAGTTTCGAGCTTGCTaGGCCTTCAGCATGATCTCG +
Preference number: 5 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAAEFRAC*AFSMIS
Trigger: CGAGATCATGCTGAAGGCCAAGCAAGCTCGAAACTC...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTTTCTTCTCCTCGTTCTaGCTCTCAGCTAGCACCGTG +
Preference number: 5 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAAFFSSF*LSASTV
Trigger: CACGGTGCTAGCTGAGAGCAAGAACGAGGAGAAGAA...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGAGCCTCTTCAGCTGTaGATGCTGCCTGTGTGCTAC +
Preference number: 5 (lower is better)
Translates to: SSPAPVATARATAVLFAGEPLQL*MLPVCY
Trigger: GTAGCACACAGGCAGCATCAACAGCTGAAGAGGCTC...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS GCA 90 bp GTCCCTGTTCCTGGGCCAAAGCCCGCTCGTCGTCGCGGAACAACTTaGAGGCATAGCCGAAAACCAGAAGCTCCACCCGGTTGCCCCCAG +
Preference number: 5 (lower is better)
Translates to: VPVPGPKPARRRGTT*RHSRKPEAPPGCPQ
Trigger: CTGGGGGCAACCGGGTGGAGCTTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACGACGAGCGGGCTTTGGCCCAGGAACAGGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053737.9
ENSMUST00000196698.5
ENSMUST00000200500.2
CDS-3UTR CAA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGTGCTTGCATACGAAGTaGGCTGTGCGCTCAATGATG +
Preference number: 5 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGCLHTK*AVRSMM
Trigger: CATCATTGAGCGCACAGCCAACTTCGTATGCAAGCA...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGTTTTGTTTTGCTTGCTaGGCTTCCAGCTCCTCCTGG +
Preference number: 5 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGFCFAC*ASSSSW
Trigger: CCAGGAGGAGCTGGAAGCCAAGCAAGCAAAACAAAA...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp AGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCAGCTTTTGTTTTGCTaGCTTGGCTTCCAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: STCGHSQGHSRAVRRGLLQLLFC*LGFQLL
Trigger: GAGGAGCTGGAAGCCAAGCAAGCAAAACAAAAGCTG...GAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp TCGAGCTTGCTTGGCCTTCAGCATGATCTCGAACTGTGCTCCCTGCTTGCATACCCTTTCCTCTCCGGCTaGGCACGGCCCCCGCCGGCA +
Preference number: 5 (lower is better)
Translates to: SSLLGLQHDLELCSLLAYPFLSG*ARPPPA
Trigger: TGCCGGCGGGGGCCGTGCCAAGCCGGAGAGGAAAGG...GTATGCAAGCAGGGAGCACAGTTCGAGATCATGCTGAAGGCCAAGCAAGCTCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR CAA 90 bp AGTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGATTCTTCCTCTTGCCTaGCCTCCTCCTCAAGCAAGT +
Preference number: 5 (lower is better)
Translates to: SSPAPVATARATAVLFAGILPLA*PPPQAS
Trigger: ACTTGCTTGAGGAGGAGGCAAGGCAAGAGGAAGAAT...CCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCCGGGGCTGCCGTAGGAGGTCATTTTCTTaGGCTTTGATGGCAAAGCTT +
Preference number: 5 (lower is better)
Translates to: HSQGHSRAVRRGLLRGCRRRSFS*ALMAKL
Trigger: AAGCTTTGCCATCAAAGCCAAAGAAAATGACCTCCT...ACGGCAGCCCCGGAGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS CCA 90 bp CGGCCTGTTTACTCGGGGATGTTGACTGCGACCGGGCCTTGGCTTTaGTGCGAGACCGTGAGCGCCGTTTCTTCTTCTTCTCGTGGGGAC +
Preference number: 5 (lower is better)
Translates to: RPVYSGMLTATGPWL*CETVSAVSSSSRGD
Trigger: GTCCCCACGAGAAGAAGAAGAAACGGCGCTCACGGTCTCGCACCAAAGCCAAGGCCCGGTCGCAGTCAACATCCCCGAGTAAACAGGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp CAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGCTGCTCTCTTTCTTCTTCTCTaGGTGGATCTCTGCATCTGT +
Preference number: 5 (lower is better)
Translates to: QHLWPQPGPQPCCSPGAALFLLL*VDLCIC
Trigger: ACAGATGCAGAGATCCACCAAGAGAAGAAGAAAGAG...AGCAGCCCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp GTAGCCCAGCACCTGTGGCCACAGCCAGGGCCACAGCCGTGCTGTTCGCCGGGGGTCCGAGACCGTTTTTaGTGCTTCTTCTTCTTTTTC +
Preference number: 5 (lower is better)
Translates to: VAQHLWPQPGPQPCCSPGVRDRF*CFFFFF
Trigger: GAAAAAGAAGAAGAAGCACAAAAAACGGTCTCGGAC...CCCCGGCGAACAGCACGGCTGTGGCCCTGGCTGTGGCCACAGGTGCTGGGCTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS GCA 90 bp CCTGTTTACTCGGGGATGTTGACTGCGACCGGGCCTTGGCTTTGGTaGGAGACCGTGAGCGCCGTTTCTTCTTCTTCTCGTGGGGACTTC +
Preference number: 5 (lower is better)
Translates to: PVYSGMLTATGPWLW*ETVSAVSSSSRGDF
Trigger: GAAGTCCCCACGAGAAGAAGAAGAAACGGCGCTCACGGTCTCGCACCAAAGCCAAGGCCCGGTCGCAGTCAACATCCCCGAGTAAACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS CCA 90 bp CTACCCGAGCCTCCTCTTCAGACAGCTGGTAGTCTCGGTTCCACGTaGCGTACTCAGCATCGTACGCAGAGAGGTCATGCAGGTGACCAC +
Preference number: 5 (lower is better)
Translates to: LPEPPLQTAGSLGST*RTQHRTQRGHAGDH
Trigger: GTGGTCACCTGCATGACCTCTCTGCGTACGATGCTGAGTACGCCACGTGGAACCGAGACTACCAGCTGTCTGAAGAGGAGGCTCGGGTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053737.9
ENSMUST00000196698.5
ENSMUST00000200500.2
CDS TCA 90 bp CCTCTTCCGTGGGCTCTGACGGGTCATAATAGTCGCTGCCGTAAGTaGACCCTACGGCACTGTAGTTTCCATCCTCCGCCAGCGCTTCAC +
Preference number: 5 (lower is better)
Translates to: PLPWALTGHNSRCRK*TLRHCSFHPPPALH
Trigger: GTGAAGCGCTGGCGGAGGATGGAAACTACAGTGCCGTAGGGTTCACTTACGGCAGCGACTATTATGACCCGTCAGAGCCCACGGAAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp TGTAGGTCGGCAGAGCTCACAGCTCAGCTTCTGACGTCTGGACTGTGGCTGCTCGCACAGAGGAGACGATaGCTGAGGAGATCTGGCCAT +
Preference number: 5 (lower is better)
Translates to: CRSAELTAQLLTSGLWLLAQRRR*LRRSGH
Trigger: ATGGCCAGATCTCCTCAGCAATCGTCTCCTCTGTGC...GAGCAGCCACAGTCCAGACGTCAGAAGCTGAGCTGTGAGCTCTGCCGACCTACA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp TGTAGGTCGGCAGAGCTCACAGCTCAGCTTCTGACGTCTGGACTGTGGCTGCTCATGATGGCATGCATTTaGGCTGTTGGTGGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: CRSAELTAQLLTSGLWLLMMACI*AVGGSS
Trigger: GGAGCTGCCACCAACAGCCAAAATGCATGCCATCAT...GAGCAGCCACAGTCCAGACGTCAGAAGCTGAGCTGTGAGCTCTGCCGACCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp TTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGCGAAGACGAGTGGTACTaGGGAGAGCGGGACCTTGTC +
Preference number: 5 (lower is better)
Translates to: LQKPLTDPGVGLENLDSCEDEWY*GERDLV
Trigger: GACAAGGTCCCGCTCTCCCAAGTACCACTCGTCTTC...GCAGCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp GGTCCTCTCAGAACGCAAAGACTCCTGTTTTTCCAATCCACTGGGTACTTGCCTCTGTCGATGAGGATCTaGGGGTCCCCCATCCAGGGG +
Preference number: 5 (lower is better)
Translates to: GPLRTQRLLFFQSTGYLPLSMRI*GSPIQG
Trigger: CCCCTGGATGGGGGACCCCAAGATCCTCATCGACAG...AGGCAAGTACCCAGTGGATTGGAAAAACAGGAGTCTTTGCGTTCTGAGAGGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000200500.2
CDS-3UTR CAA 90 bp TGTAGGTCGGCAGAGCTCACAGCTCAGCTTCTGACGTCTGGACTGTGGCTGCTCGATCTCTGCATCTGTTaGAAGGCCTTTCTGGAGGCT +
Preference number: 5 (lower is better)
Translates to: CRSAELTAQLLTSGLWLLDLCIC*KAFLEA
Trigger: AGCCTCCAGAAAGGCCTTCAAACAGATGCAGAGATC...GAGCAGCCACAGTCCAGACGTCAGAAGCTGAGCTGTGAGCTCTGCCGACCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp TTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTGCAACTGTGCTCCCTGCTaGCATACGAAGTTGGCTGTG +
Preference number: 5 (lower is better)
Translates to: LQKPLTDPGVGLENLDSCNCAPC*HTKLAV
Trigger: CACAGCCAACTTCGTATGCAAGCAGGGAGCACAGTT...GCAGCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp TGTAGGTCGGCAGAGCTCACAGCTCAGCTTCTGACGTCTGGACTGTGGCTGCTCTGGTTTGCAGGTTTTTaGAAGCTGCGAGCATTGCTC +
Preference number: 5 (lower is better)
Translates to: CRSAELTAQLLTSGLWLLWFAGF*KLRALL
Trigger: GAGCAATGCTCGCAGCTTCAAAAAACCTGCAAACCA...GAGCAGCCACAGTCCAGACGTCAGAAGCTGAGCTGTGAGCTCTGCCGACCTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp TTGATGGCAAAGCTTATTGGAGCAAAAGAAGCTTTTACCAGCTTCCCGTCCACGCTGTCGATGAGGATCTaGGGGTCCCCCATCCAGGGG +
Preference number: 5 (lower is better)
Translates to: LMAKLIGAKEAFTSFPSTLSMRI*GSPIQG
Trigger: CCCCTGGATGGGGGACCCCAAGATCCTCATCGACAG...CGTGGACGGGAAGCTGGTAAAAGCTTCTTTTGCTCCAATAAGCTTTGCCATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000196698.5
CDS-3UTR CAA 90 bp AATTTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCTTCTCCTTTGATTCCTaGGACGCCTGGGCTAGCTTT +
Preference number: 5 (lower is better)
Translates to: NLQKPLTDPGVGLENLDSFSFDS*DAWASF
Trigger: AAAGCTAGCCCAGGCGTCCAAGGAATCAAAGGAGAA...GCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS-3UTR CAA 90 bp AATTTACAAAAGCCACTGACTGACCCAGGAGTCGGGCTGGAGAACCTGGATAGCCTTCGTTGTCAGAGGTaGGCCCAGACTTTTTCTTCT +
Preference number: 5 (lower is better)
Translates to: NLQKPLTDPGVGLENLDSLRCQR*AQTFSS
Trigger: AGAAGAAAAAGTCTGGGCCAACCTCTGACAACGAAG...GCTATCCAGGTTCTCCAGCCCGACTCCTGGGTCAGTCAGTGGCTTTTGTAAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS CCA 72 bp CCTGGGAGGAACCTCGGCTCTCCACAGGAGAGATGCTaGCCGAGTGGGCTGAGTGGGCCGAGGGACGCTGTG +
Preference number: 6 (lower is better)
Translates to: PGRNLGSPQERC*PSGLSGPRDAV
Trigger: CACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGAGGTTCCTCCCAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS GCA 72 bp GTTCCTGGGAGGAACCTCGGCTCTCCACAGGAGAGATaGTGGCCGAGTGGGCTGAGTGGGCCGAGGGACGCT +
Preference number: 6 (lower is better)
Translates to: VPGRNLGSPQER*WPSGLSGPRDA
Trigger: AGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGAGGTTCCTCCCAGGAAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS CCA 72 bp CTCTCCACAGGAGAGATGCTGGCCGAGTGGGCTGAGTaGGCCGAGGGACGCTGTGCGGCCTGTTTACTCGGG +
Preference number: 6 (lower is better)
Translates to: LSTGEMLAEWAE*AEGRCAACLLG
Trigger: CCCGAGTAAACAGGCCGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS TCA 72 bp TCGGCTCTCCACAGGAGAGATGCTGGCCGAGTGGGCTaGGTGGGCCGAGGGACGCTGTGCGGCCTGTTTACT +
Preference number: 6 (lower is better)
Translates to: SALHRRDAGRVG*VGRGTLCGLFT
Trigger: AGTAAACAGGCCGCACAGCGTCCCTCGGCCCACTCAGCCCACTCGGCCAGCATCTCTCCTGTGGAGAGCCGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS CCA 72 bp TCCCCCATCCAGGGGATGAGGTGCTGTCCCTGTTCCTaGGCCAAAGCCCGCTCGTCGTCGCGGAACAACTTG +
Preference number: 6 (lower is better)
Translates to: SPIQGMRCCPCS*AKARSSSRNNL
Trigger: CAAGTTGTTCCGCGACGACGAGCGGGCTTTGGCCCAGGAACAGGGACAGCACCTCATCCCCTGGATGGGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053737.9
ENSMUST00000196698.5
ENSMUST00000200500.2
CDS GCA 72 bp CCTGGGCCAAAGCCCGCTCGTCGTCGCGGAACAACTTaGAGGCATAGCCGAAAACCAGAAGCTCCACCCGGT +
Preference number: 6 (lower is better)
Translates to: PGPKPARRRGTT*RHSRKPEAPPG
Trigger: ACCGGGTGGAGCTTCTGGTTTTCGGCTATGCCTGCAAGTTGTTCCGCGACGACGAGCGGGCTTTGGCCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053737.9
ENSMUST00000196698.5
ENSMUST00000200500.2
CDS CAA 90 bp GCGGCCTGTTTACTCGGGGATGTTGACTGCGACCGGGCCTTGGCTTaGGTGCGAGACCGTGAGCGCCGTTTCTTCTTCTTCTCGTGGGGA +
Preference number: 6 (lower is better)
Translates to: AACLLGDVDCDRALA*VRDRERRFFFFSWG
Trigger: TCCCCACGAGAAGAAGAAGAAACGGCGCTCACGGTCTCGCACCAAAGCCAAGGCCCGGTCGCAGTCAACATCCCCGAGTAAACAGGCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS CAA 90 bp CGCTGTGCGGCCTGTTTACTCGGGGATGTTGACTGCGACCGGGCCTaGGCTTTGGTGCGAGACCGTGAGCGCCGTTTCTTCTTCTTCTCG +
Preference number: 6 (lower is better)
Translates to: RCAACLLGDVDCDRA*ALVRDRERRFFFFS
Trigger: CGAGAAGAAGAAGAAACGGCGCTCACGGTCTCGCACCAAAGCCAAGGCCCGGTCGCAGTCAACATCCCCGAGTAAACAGGCCGCACAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS CCA 72 bp CCTGTTTACTCGGGGATGTTGACTGCGACCGGGCCTTaGCTTTGGTGCGAGACCGTGAGCGCCGTTTCTTCT +
Preference number: 6 (lower is better)
Translates to: PVYSGMLTATGP*LWCETVSAVSS
Trigger: AGAAGAAACGGCGCTCACGGTCTCGCACCAAAGCCAAGGCCCGGTCGCAGTCAACATCCCCGAGTAAACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS CCA 72 bp GTGCGAGACCGTGAGCGCCGTTTCTTCTTCTTCTCGTaGGGACTTCTGGAACGGGTCCTTTTCCTGCTGACC +
Preference number: 6 (lower is better)
Translates to: VRDRERRFFFFS*GLLERVLFLLT
Trigger: GGTCAGCAGGAAAAGGACCCGTTCCAGAAGTCCCCACGAGAAGAAGAAGAAACGGCGCTCACGGTCTCGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS CAA 72 bp TTACTCGGGGATGTTGACTGCGACCGGGCCTTGGCTTaGGTGCGAGACCGTGAGCGCCGTTTCTTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: LLGDVDCDRALA*VRDRERRFFFF
Trigger: GAAGAAGAAGAAACGGCGCTCACGGTCTCGCACCAAAGCCAAGGCCCGGTCGCAGTCAACATCCCCGAGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9
CDS TCA 72 bp GCGTACTCAGCATCGTACGCAGAGAGGTCATGCAGGTaGCCACGCCCGTCGTATCTGTCGATGAGGATCTTG +
Preference number: 6 (lower is better)
Translates to: AYSASYAERSCR*PRPSYLSMRIL
Trigger: CAAGATCCTCATCGACAGATACGACGGGCGTGGTCACCTGCATGACCTCTCTGCGTACGATGCTGAGTACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053737.9
ENSMUST00000196698.5
ENSMUST00000200500.2
CDS CCA 72 bp CCTCCTCTTCAGACAGCTGGTAGTCTCGGTTCCACGTaGCGTACTCAGCATCGTACGCAGAGAGGTCATGCA +
Preference number: 6 (lower is better)
Translates to: PPLQTAGSLGST*RTQHRTQRGHA
Trigger: TGCATGACCTCTCTGCGTACGATGCTGAGTACGCCACGTGGAACCGAGACTACCAGCTGTCTGAAGAGGAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053737.9
ENSMUST00000196698.5
ENSMUST00000200500.2
CDS GCA 72 bp GAGCAAAAGAAGCTTTTACCAGCTTCCCGTCCACGGTaGTCTTGCTGGACCCAGCCTCCTTCTTTCTGCAGG +
Preference number: 6 (lower is better)
Translates to: EQKKLLPASRPR*SCWTQPPSFCR
Trigger: CCTGCAGAAAGAAGGAGGCTGGGTCCAGCAAGAGCACCGTGGACGGGAAGCTGGTAAAAGCTTCTTTTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199215.2
CDS GCA 72 bp AAGAAGCTTTTACCAGCTTCCCGTCCACGGTGCTCTTaGTGGACCCAGCCTCCTTCTTTCTGCAGGAAGAAC +
Preference number: 6 (lower is better)
Translates to: KKLLPASRPRCS*WTQPPSFCRKN
Trigger: GTTCTTCCTGCAGAAAGAAGGAGGCTGGGTCCAGCAAGAGCACCGTGGACGGGAAGCTGGTAAAAGCTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199215.2
CDS TCA 72 bp CTGAGTTATTTTGCTCTGCACAGAGGAGACGATTGCTaGGGAGATCTGGCCATCTTTTTCCTGAGAAACCCC +
Preference number: 6 (lower is better)
Translates to: LSYFALHRGDDC*GDLAIFFLRNP
Trigger: GGGGTTTCTCAGGAAAAAGATGGCCAGATCTCCTCAGCAATCGTCTCCTCTGTGCAGAGCAAAATAACTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053737.9