RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SFR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025066

Ensembl transcript IDs: ENSMUST00000099353.6

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAAACATTTCTCTTTGCATTGCCATTCTCAAAGACAATCTGTAAATaGGCCAAGTGTATAGCTCAGGAACAGAGCACATGTTTTGAGGCC +
Preference number: 1 (lower is better)
Translates to: KTFLFALPFSKTICK*AKCIAQEQSTCFEA
Trigger: GGCCTCAAAACATGTGCTCTGTTCCTGAGCTATACACTTGGCCCATTTACAGATTGTCTTTGAGAATGGCAATGCAAAGAGAAATGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
3UTR-3UTR GCA 90 bp CATAAACTTAGGAAGGGCAGGCTACATTTATGCCACTTGAGATTTAGACATTCACATTTCTCTTTGCATTaGCATTCTCAAAGACAATCT +
Preference number: 2 (lower is better)
Translates to: HKLRKGRLHLCHLRFRHSHFSLH*HSQRQS
Trigger: AGATTGTCTTTGAGAATGGCAATGCAAAGAGAAATG...TGAATGTCTAAATCTCAAGTGGCATAAATGTAGCCTGCCCTTCCTAAGTTTATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
3UTR TCA 72 bp GGCCAAGTGTATAGCTCAGGAACAGAGCACATGTTTTaGGGCCCTAGGTATGATCACATCACCCAAAGAAGA +
Preference number: 3 (lower is better)
Translates to: GQVYSSGTEHMF*GPRYDHITQRR
Trigger: TCTTCTTTGGGTGATGTGATCATACCTAGGGCCTCAAAACATGTGCTCTGTTCCTGAGCTATACACTTGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
3UTR-3UTR CAA 90 bp ATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTTTTTACATTTCTCTTTGCATaGCCATTCTCAAAGACAATC +
Preference number: 3 (lower is better)
Translates to: IPNCSTFLPLSHNSLDLFTFLFA*PFSKTI
Trigger: GATTGTCTTTGAGAATGGCAATGCAAAGAGAAATGT...AAAAAGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS-3UTR TCA 90 bp GAATATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTGGATTCTCACTGGTCTaGGGAGCGGCAGGTGAAGTC +
Preference number: 4 (lower is better)
Translates to: EYPKLFNIPPSKPQQLRSGFSLV*GAAGEV
Trigger: GACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCC...AGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGATATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS-3UTR TCA 90 bp GAATATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTGGATTCTCACTGGGCTaGGGAGCATCAGGTGAAGTC +
Preference number: 4 (lower is better)
Translates to: EYPKLFNIPPSKPQQLRSGFSLG*GASGEV
Trigger: GACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCC...AGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGATATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS-3UTR CCA 90 bp ATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTTTTTATGGTGGATTCTCACTaGTCTGAGGAGCGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: IPNCSTFLPLSHNSLDLFMVDSH*SEERQV
Trigger: CACCTGCCGCTCCTCAGACCAGTGAGAATCCACCAT...AAAAAGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS-3UTR GCA 90 bp CATAAACTTAGGAAGGGCAGGCTACATTTATGCCACTTGAGATTTAGACATTCATCCGACATGATAGACTaGAGCTCACACAGCAGCCGC +
Preference number: 4 (lower is better)
Translates to: HKLRKGRLHLCHLRFRHSSDMID*SSHSSR
Trigger: GCGGCTGCTGTGTGAGCTGCAGTCTATCATGTCGGA...TGAATGTCTAAATCTCAAGTGGCATAAATGTAGCCTGCCCTTCCTAAGTTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS-3UTR CCA 90 bp AAACATTTCTCTTTGCATTGCCATTCTCAAAGACAATCTGTAAATGGGCCAAGTATGGTGGATTCTCACTaGGCTGAGGAGCATCAGGTG +
Preference number: 4 (lower is better)
Translates to: KHFSLHCHSQRQSVNGPSMVDSH*AEEHQV
Trigger: CACCTGATGCTCCTCAGCCCAGTGAGAATCCACCAT...ACTTGGCCCATTTACAGATTGTCTTTGAGAATGGCAATGCAAAGAGAAATGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS-3UTR TCA 90 bp CATAAACTTAGGAAGGGCAGGCTACATTTATGCCACTTGAGATTTAGACATTCAAGATTCTCCTGGTTCTaGAAGGGTCTCATTATTTTC +
Preference number: 4 (lower is better)
Translates to: HKLRKGRLHLCHLRFRHSRFSWF*KGLIIF
Trigger: GAAAATAATGAGACCCTTTCAGAACCAGGAGAATCT...TGAATGTCTAAATCTCAAGTGGCATAAATGTAGCCTGCCCTTCCTAAGTTTATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS TCA 90 bp GGAGCGGCAGGTGAAGTCGGGGGTGATGGTGGATTCTCCCTGGGCTaGGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTG +
Preference number: 5 (lower is better)
Translates to: GAAGEVGGDGGFSLG*GAAGEVGGDGGFSL
Trigger: CAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS TCA 90 bp GGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTGGGCTaGGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTG +
Preference number: 5 (lower is better)
Translates to: GAAGEVGGDGGFSLG*GAAGEVGGDGGFSL
Trigger: CAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS CCA 90 bp GCTGAGGAGCGGCAGGTGAAGTCGGGGGTGATGGTGGATTCTCCCTaGGCTGAGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCT +
Preference number: 5 (lower is better)
Translates to: AEERQVKSGVMVDSP*AEERQVKSVVMVDS
Trigger: AGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS CCA 90 bp GCTGAGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTaGGCTGAGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCT +
Preference number: 5 (lower is better)
Translates to: AEERQVKSVVMVDSP*AEERQVKSVVMVDS
Trigger: AGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS CCA 90 bp GCTGAGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTaGTCTGAGGAACGGCAGGTGAAGTCGGTGGTGATGGTGGATTCT +
Preference number: 5 (lower is better)
Translates to: AEERQVKSVVMVDSP*SEERQVKSVVMVDS
Trigger: AGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS TCA 90 bp TTTCCTGAACTATTCGAATGGGGTGATGGTGGATTCTCCCTGGGCTaGGGAGCGGCAGGTGAAGTCGGGGGTGATGGTGGATTCTCCCTG +
Preference number: 5 (lower is better)
Translates to: FPELFEWGDGGFSLG*GAAGEVGGDGGFSL
Trigger: CAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS TCA 90 bp GGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCACTGGGCTaGGGAGCATCAGGTGAAGTCGATGCTGAATCTGATGAGTTTTCC +
Preference number: 5 (lower is better)
Translates to: GAAGEVGGDGGFSLG*GASGEVDAESDEFS
Trigger: GGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS-3UTR CAA 90 bp ATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTTTTTCCAGGCTCACTGTCTTaGTTTTTCAAGCTTTCTTGG +
Preference number: 5 (lower is better)
Translates to: IPNCSTFLPLSHNSLDLFPGSLS*FFKLSW
Trigger: CCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGG...AAAAAGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS-3UTR CAA 90 bp ATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTTTTTAACAATTTTCTTCCTTaGAAGATTCTCCTGGTTCTG +
Preference number: 5 (lower is better)
Translates to: IPNCSTFLPLSHNSLDLFNNFLP*KILLVL
Trigger: CAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTT...AAAAAGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS CCA 72 bp CGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTaGTCTGAGGAACGGCAGGTGAAGTCGGTGGTGATG +
Preference number: 6 (lower is better)
Translates to: RQVKSVVMVDSP*SEERQVKSVVM
Trigger: CATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS TCA 72 bp GGTGAAGTCGGTGGTGATGGTGGATTCTCACTGGTCTaGGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGA +
Preference number: 6 (lower is better)
Translates to: GEVGGDGGFSLV*GAAGEVGGDGG
Trigger: TCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS CCA 72 bp CGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCACTaGGCTGAGGAGCATCAGGTGAAGTCGATGCTGAAT +
Preference number: 6 (lower is better)
Translates to: RQVKSVVMVDSH*AEEHQVKSMLN
Trigger: ATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS TCA 72 bp GGTGAAGTCGGTGGTGATGGTGGATTCTCACTGGGCTaGGGAGCATCAGGTGAAGTCGATGCTGAATCTGAT +
Preference number: 6 (lower is better)
Translates to: GEVGGDGGFSLG*GASGEVDAESD
Trigger: ATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS CAA 72 bp TTCTCCTCTGAGCTCTTTTCTCCAGGCTCACTGTCTTaGTTTTTCAAGCTTTCTTGGGCCTTTGAACAATTT +
Preference number: 6 (lower is better)
Translates to: FSSELFSPGSLS*FFKLSWAFEQF
Trigger: AAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS CAA 90 bp TTTCTCCAGGCTCACTGTCTTTGTTTTTCAAGCTTTCTTGGGCCTTaGAACAATTTTCTTCCTTTGAAGATTCTCCTGGTTCTGAAAGGG +
Preference number: 6 (lower is better)
Translates to: FLQAHCLCFSSFLGP*NNFLPLKILLVLKG
Trigger: CCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS CCA 72 bp TCTCCAGGCTCACTGTCTTTGTTTTTCAAGCTTTCTTaGGCCTTTGAACAATTTTCTTCCTTTGAAGATTCT +
Preference number: 6 (lower is better)
Translates to: SPGSLSLFFKLS*AFEQFSSFEDS
Trigger: AGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS CAA 72 bp TCAAGCTTTCTTGGGCCTTTGAACAATTTTCTTCCTTaGAAGATTCTCCTGGTTCTGAAAGGGTCTCATTAT +
Preference number: 6 (lower is better)
Translates to: SSFLGPLNNFLP*KILLVLKGSHY
Trigger: ATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6
CDS CAA 72 bp TCTAACTCAGTCACGTCGTTCTTTATTCTATACATCTaGACTAACTTTAACCTCCGAAGAAGGTCTTCCTTC +
Preference number: 6 (lower is better)
Translates to: SNSVTSFFILYI*TNFNLRRRSSF
Trigger: GAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAGAACGACGTGACTGAGTTAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099353.6