Pregenerated sensors for SFR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025066Ensembl transcript IDs: ENSMUST00000099353.6
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | AAAACATTTCTCTTTGCATTGCCATTCTCAAAGACAATCTGTAAATaGGCCAAGTGTATAGCTCAGGAACAGAGCACATGTTTTGAGGCC | + |
Preference number: 1 (lower is better) Translates to: KTFLFALPFSKTICK*AKCIAQEQSTCFEA Trigger: GGCCTCAAAACATGTGCTCTGTTCCTGAGCTATACACTTGGCCCATTTACAGATTGTCTTTGAGAATGGCAATGCAAAGAGAAATGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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3UTR-3UTR GCA 90 bp | CATAAACTTAGGAAGGGCAGGCTACATTTATGCCACTTGAGATTTAGACATTCACATTTCTCTTTGCATTaGCATTCTCAAAGACAATCT | + |
Preference number: 2 (lower is better) Translates to: HKLRKGRLHLCHLRFRHSHFSLH*HSQRQS Trigger: AGATTGTCTTTGAGAATGGCAATGCAAAGAGAAATG...TGAATGTCTAAATCTCAAGTGGCATAAATGTAGCCTGCCCTTCCTAAGTTTATG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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3UTR TCA 72 bp | GGCCAAGTGTATAGCTCAGGAACAGAGCACATGTTTTaGGGCCCTAGGTATGATCACATCACCCAAAGAAGA | + |
Preference number: 3 (lower is better) Translates to: GQVYSSGTEHMF*GPRYDHITQRR Trigger: TCTTCTTTGGGTGATGTGATCATACCTAGGGCCTCAAAACATGTGCTCTGTTCCTGAGCTATACACTTGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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3UTR-3UTR CAA 90 bp | ATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTTTTTACATTTCTCTTTGCATaGCCATTCTCAAAGACAATC | + |
Preference number: 3 (lower is better) Translates to: IPNCSTFLPLSHNSLDLFTFLFA*PFSKTI Trigger: GATTGTCTTTGAGAATGGCAATGCAAAGAGAAATGT...AAAAAGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS-3UTR TCA 90 bp | GAATATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTGGATTCTCACTGGTCTaGGGAGCGGCAGGTGAAGTC | + |
Preference number: 4 (lower is better) Translates to: EYPKLFNIPPSKPQQLRSGFSLV*GAAGEV Trigger: GACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCC...AGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGATATTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS-3UTR TCA 90 bp | GAATATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTGGATTCTCACTGGGCTaGGGAGCATCAGGTGAAGTC | + |
Preference number: 4 (lower is better) Translates to: EYPKLFNIPPSKPQQLRSGFSLG*GASGEV Trigger: GACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCC...AGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGATATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS-3UTR CCA 90 bp | ATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTTTTTATGGTGGATTCTCACTaGTCTGAGGAGCGGCAGGTG | + |
Preference number: 4 (lower is better) Translates to: IPNCSTFLPLSHNSLDLFMVDSH*SEERQV Trigger: CACCTGCCGCTCCTCAGACCAGTGAGAATCCACCAT...AAAAAGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS-3UTR GCA 90 bp | CATAAACTTAGGAAGGGCAGGCTACATTTATGCCACTTGAGATTTAGACATTCATCCGACATGATAGACTaGAGCTCACACAGCAGCCGC | + |
Preference number: 4 (lower is better) Translates to: HKLRKGRLHLCHLRFRHSSDMID*SSHSSR Trigger: GCGGCTGCTGTGTGAGCTGCAGTCTATCATGTCGGA...TGAATGTCTAAATCTCAAGTGGCATAAATGTAGCCTGCCCTTCCTAAGTTTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS-3UTR CCA 90 bp | AAACATTTCTCTTTGCATTGCCATTCTCAAAGACAATCTGTAAATGGGCCAAGTATGGTGGATTCTCACTaGGCTGAGGAGCATCAGGTG | + |
Preference number: 4 (lower is better) Translates to: KHFSLHCHSQRQSVNGPSMVDSH*AEEHQV Trigger: CACCTGATGCTCCTCAGCCCAGTGAGAATCCACCAT...ACTTGGCCCATTTACAGATTGTCTTTGAGAATGGCAATGCAAAGAGAAATGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS-3UTR TCA 90 bp | CATAAACTTAGGAAGGGCAGGCTACATTTATGCCACTTGAGATTTAGACATTCAAGATTCTCCTGGTTCTaGAAGGGTCTCATTATTTTC | + |
Preference number: 4 (lower is better) Translates to: HKLRKGRLHLCHLRFRHSRFSWF*KGLIIF Trigger: GAAAATAATGAGACCCTTTCAGAACCAGGAGAATCT...TGAATGTCTAAATCTCAAGTGGCATAAATGTAGCCTGCCCTTCCTAAGTTTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS TCA 90 bp | GGAGCGGCAGGTGAAGTCGGGGGTGATGGTGGATTCTCCCTGGGCTaGGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTG | + |
Preference number: 5 (lower is better) Translates to: GAAGEVGGDGGFSLG*GAAGEVGGDGGFSL Trigger: CAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS TCA 90 bp | GGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTGGGCTaGGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTG | + |
Preference number: 5 (lower is better) Translates to: GAAGEVGGDGGFSLG*GAAGEVGGDGGFSL Trigger: CAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS CCA 90 bp | GCTGAGGAGCGGCAGGTGAAGTCGGGGGTGATGGTGGATTCTCCCTaGGCTGAGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCT | + |
Preference number: 5 (lower is better) Translates to: AEERQVKSGVMVDSP*AEERQVKSVVMVDS Trigger: AGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS CCA 90 bp | GCTGAGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTaGGCTGAGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCT | + |
Preference number: 5 (lower is better) Translates to: AEERQVKSVVMVDSP*AEERQVKSVVMVDS Trigger: AGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS CCA 90 bp | GCTGAGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTaGTCTGAGGAACGGCAGGTGAAGTCGGTGGTGATGGTGGATTCT | + |
Preference number: 5 (lower is better) Translates to: AEERQVKSVVMVDSP*SEERQVKSVVMVDS Trigger: AGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS TCA 90 bp | TTTCCTGAACTATTCGAATGGGGTGATGGTGGATTCTCCCTGGGCTaGGGAGCGGCAGGTGAAGTCGGGGGTGATGGTGGATTCTCCCTG | + |
Preference number: 5 (lower is better) Translates to: FPELFEWGDGGFSLG*GAAGEVGGDGGFSL Trigger: CAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS TCA 90 bp | GGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCACTGGGCTaGGGAGCATCAGGTGAAGTCGATGCTGAATCTGATGAGTTTTCC | + |
Preference number: 5 (lower is better) Translates to: GAAGEVGGDGGFSLG*GASGEVDAESDEFS Trigger: GGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS-3UTR CAA 90 bp | ATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTTTTTCCAGGCTCACTGTCTTaGTTTTTCAAGCTTTCTTGG | + |
Preference number: 5 (lower is better) Translates to: IPNCSTFLPLSHNSLDLFPGSLS*FFKLSW Trigger: CCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGG...AAAAAGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS-3UTR CAA 90 bp | ATCCCAAACTGTTCAACATTCCTCCCTCTAAGCCACAACAGCTTAGATCTTTTTAACAATTTTCTTCCTTaGAAGATTCTCCTGGTTCTG | + |
Preference number: 5 (lower is better) Translates to: IPNCSTFLPLSHNSLDLFNNFLP*KILLVL Trigger: CAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTT...AAAAAGATCTAAGCTGTTGTGGCTTAGAGGGAGGAATGTTGAACAGTTTGGGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS CCA 72 bp | CGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCCCTaGTCTGAGGAACGGCAGGTGAAGTCGGTGGTGATG | + |
Preference number: 6 (lower is better) Translates to: RQVKSVVMVDSP*SEERQVKSVVM Trigger: CATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS TCA 72 bp | GGTGAAGTCGGTGGTGATGGTGGATTCTCACTGGTCTaGGGAGCGGCAGGTGAAGTCGGTGGTGATGGTGGA | + |
Preference number: 6 (lower is better) Translates to: GEVGGDGGFSLV*GAAGEVGGDGG Trigger: TCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS CCA 72 bp | CGGCAGGTGAAGTCGGTGGTGATGGTGGATTCTCACTaGGCTGAGGAGCATCAGGTGAAGTCGATGCTGAAT | + |
Preference number: 6 (lower is better) Translates to: RQVKSVVMVDSH*AEEHQVKSMLN Trigger: ATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS TCA 72 bp | GGTGAAGTCGGTGGTGATGGTGGATTCTCACTGGGCTaGGGAGCATCAGGTGAAGTCGATGCTGAATCTGAT | + |
Preference number: 6 (lower is better) Translates to: GEVGGDGGFSLG*GASGEVDAESD Trigger: ATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS CAA 72 bp | TTCTCCTCTGAGCTCTTTTCTCCAGGCTCACTGTCTTaGTTTTTCAAGCTTTCTTGGGCCTTTGAACAATTT | + |
Preference number: 6 (lower is better) Translates to: FSSELFSPGSLS*FFKLSWAFEQF Trigger: AAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS CAA 90 bp | TTTCTCCAGGCTCACTGTCTTTGTTTTTCAAGCTTTCTTGGGCCTTaGAACAATTTTCTTCCTTTGAAGATTCTCCTGGTTCTGAAAGGG | + |
Preference number: 6 (lower is better) Translates to: FLQAHCLCFSSFLGP*NNFLPLKILLVLKG Trigger: CCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS CCA 72 bp | TCTCCAGGCTCACTGTCTTTGTTTTTCAAGCTTTCTTaGGCCTTTGAACAATTTTCTTCCTTTGAAGATTCT | + |
Preference number: 6 (lower is better) Translates to: SPGSLSLFFKLS*AFEQFSSFEDS Trigger: AGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS CAA 72 bp | TCAAGCTTTCTTGGGCCTTTGAACAATTTTCTTCCTTaGAAGATTCTCCTGGTTCTGAAAGGGTCTCATTAT | + |
Preference number: 6 (lower is better) Translates to: SSFLGPLNNFLP*KILLVLKGSHY Trigger: ATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |
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CDS CAA 72 bp | TCTAACTCAGTCACGTCGTTCTTTATTCTATACATCTaGACTAACTTTAACCTCCGAAGAAGGTCTTCCTTC | + |
Preference number: 6 (lower is better) Translates to: SNSVTSFFILYI*TNFNLRRRSSF Trigger: GAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAGAACGACGTGACTGAGTTAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099353.6 |