Pregenerated sensors for SFN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047281Ensembl transcript IDs: ENSMUST00000057311.4
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGTGGGATGGGTTGGGAACACCCACCAGACAGCTACACGAAGAGTaGGATTCCCTGCCCTGGTGGCTTCAGCTTGGCTGCGCCCCCTTC | + |
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Preference number: 1 (lower is better) Translates to: GWDGLGTPTRQLHEE*DSLPWWLQLGCAPF Trigger: GAAGGGGGCGCAGCCAAGCTGAAGCCACCAGGGCAGGGAATCTCACTCTTCGTGTAGCTGTCTGGTGGGTGTTCCCAACCCATCCCACCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR GCA 90 bp | GGTTGGGAACACCCACCAGACAGCTACACGAAGAGTGAGATTCCCTaGCCTGGTGGCTTCAGCTTGGCTGCGCCCCCTTCAAAGGAGCCT | + |
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Preference number: 1 (lower is better) Translates to: GWEHPPDSYTKSEIP*PGGFSLAAPPSKEP Trigger: AGGCTCCTTTGAAGGGGGCGCAGCCAAGCTGAAGCCACCAGGGCAGGGAATCTCACTCTTCGTGTAGCTGTCTGGTGGGTGTTCCCAACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR CCA 90 bp | GGCTTCAGCTTGGCTGCGCCCCCTTCAAAGGAGCCTTCCAAGGTGTaGCTGAACATTCAGGGTTTGGGAAGGGCAGAGTCCCACTCCGTT | + |
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Preference number: 1 (lower is better) Translates to: GFSLAAPPSKEPSKV*LNIQGLGRAESHSV Trigger: AACGGAGTGGGACTCTGCCCTTCCCAAACCCTGAATGTTCAGCCACACCTTGGAAGGCTCCTTTGAAGGGGGCGCAGCCAAGCTGAAGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR CCA 90 bp | CTCACACACACAGCCCTTGCCACAGTCCAGTTCTCAGCCACAGGGTaGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACAGGTGCCC | + |
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Preference number: 1 (lower is better) Translates to: LTHTALATVQFSATG*GASWIIRIQKQQVP Trigger: GGGCACCTGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGTGGCTGAGAACTGGACTGTGGCAAGGGCTGTGTGTGTGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR-3UTR GCA 90 bp | CAGCCACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACAGGTGCTGGCTTCAGCTTGGCTaGGCCCCCTTCAAAGGAGCC | + |
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Preference number: 2 (lower is better) Translates to: QPQGGEPPGLFGSRSNRCWLQLG*APFKGA Trigger: GGCTCCTTTGAAGGGGGCGCAGCCAAGCTGAAGCCA...GCACCTGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGTGGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR CAA 90 bp | GACAGCTACACGAAGAGTGAGATTCCCTGCCCTGGTGGCTTCAGCTaGGCTGCGCCCCCTTCAAAGGAGCCTTCCAAGGTGTGGCTGAAC | + |
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Preference number: 2 (lower is better) Translates to: DSYTKSEIPCPGGFS*AAPPSKEPSKVWLN Trigger: GTTCAGCCACACCTTGGAAGGCTCCTTTGAAGGGGGCGCAGCCAAGCTGAAGCCACCAGGGCAGGGAATCTCACTCTTCGTGTAGCTGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR-3UTR GCA 90 bp | AGCCACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACAGGTGCCCGTTTTAGTCCTCTCTaGAGGCTGGGGACTGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: SHRVGSLLDYSDPEATGARFSPL*RLGTGG Trigger: CCCTCCAGTCCCCAGCCTGCAGAGAGGACTAAAACG...GGCACCTGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGTGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR-3UTR CCA 90 bp | GAGTGTCACAGGGCAACTTTATTGAGTGGTAGCATGGTCACACCCAGCAAACGTCTGCAGGCTGGGGACTaGAGGGCAAGGCGAGCCGGG | + |
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Preference number: 2 (lower is better) Translates to: ECHRATLLSGSMVTPSKRLQAGD*RARRAG Trigger: CCCGGCTCGCCTTGCCCTCCAGTCCCCAGCCTGCAG...ACGTTTGCTGGGTGTGACCATGCTACCACTCAATAAAGTTGCCCTGTGACACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR CAA 90 bp | CCCCCTTCAAAGGAGCCTTCCAAGGTGTGGCTGAACATTCAGGGTTaGGGAAGGGCAGAGTCCCACTCCGTTTTAGTCCTCTCTGCAGGC | + |
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Preference number: 2 (lower is better) Translates to: PPSKEPSKVWLNIQG*GRAESHSVLVLSAG Trigger: GCCTGCAGAGAGGACTAAAACGGAGTGGGACTCTGCCCTTCCCAAACCCTGAATGTTCAGCCACACCTTGGAAGGCTCCTTTGAAGGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR-3UTR GCA 90 bp | TGGATTATTCGGATCCAGAAGCAACAGGTGCCCGAGGGAGGCTCAGGGGGAGGAAAGAGTGAGATTCCCTaGCCTGGTGGCTTCAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: WIIRIQKQQVPEGGSGGGKSEIP*PGGFSL Trigger: CAAGCTGAAGCCACCAGGGCAGGGAATCTCACTCTT...TCCTCCCCCTGAGCCTCCCTCGGGCACCTGTTGCTTCTGGATCCGAATAATCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR-3UTR CCA 90 bp | GCAACTTTATTGAGTGGTAGCATGGTCACACCCAGCAAACGTGTTCCCTCTCATGTCCTCTCTGCAGGCTaGGGACTGGAGGGCAAGGCG | + |
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Preference number: 2 (lower is better) Translates to: ATLLSGSMVTPSKRVPSHVLSAG*GLEGKA Trigger: CGCCTTGCCCTCCAGTCCCCAGCCTGCAGAGAGGAC...ATGAGAGGGAACACGTTTGCTGGGTGTGACCATGCTACCACTCAATAAAGTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR-3UTR TCA 90 bp | GTTGGGAACACCCACCAGACAGCTACACGAAGAGTGAGATTCCCTGCCCTGGTGCTTCCAAGGTGTGGCTaGACATTCAGGGTTTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: VGNTHQTATRRVRFPALVLPRCG*TFRVWE Trigger: TTCCCAAACCCTGAATGTTCAGCCACACCTTGGAAG...CACCAGGGCAGGGAATCTCACTCTTCGTGTAGCTGTCTGGTGGGTGTTCCCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR-3UTR CCA 90 bp | GTTCCCTCTCATTCACTCTCTCTCTCTCTCTCACACACACACACACAGAGTTTCGAGCCTTCCAAGGTGTaGCTGAACATTCAGGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: VPSHSLSLSLSHTHTQSFEPSKV*LNIQGL Trigger: CAAACCCTGAATGTTCAGCCACACCTTGGAAGGCTC...GAAACTCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGTGAATGAGAGGGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR CCA 72 bp | GCAGAGTCCCACTCCGTTTTAGTCCTCTCTGCAGGCTaGGGACTGGAGGGCAAGGCGAGCCGGGGTGGTTGT | + |
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Preference number: 3 (lower is better) Translates to: AESHSVLVLSAG*GLEGKASRGGC Trigger: ACAACCACCCCGGCTCGCCTTGCCCTCCAGTCCCCAGCCTGCAGAGAGGACTAAAACGGAGTGGGACTCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR TCA 72 bp | GGGTTGGGAACACCCACCAGACAGCTACACGAAGAGTaGGATTCCCTGCCCTGGTGGCTTCAGCTTGGCTGC | + |
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Preference number: 3 (lower is better) Translates to: GLGTPTRQLHEE*DSLPWWLQLGC Trigger: GCAGCCAAGCTGAAGCCACCAGGGCAGGGAATCTCACTCTTCGTGTAGCTGTCTGGTGGGTGTTCCCAACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR TCA 72 bp | CTGCGCCCCCTTCAAAGGAGCCTTCCAAGGTGTGGCTaGACATTCAGGGTTTGGGAAGGGCAGAGTCCCACT | + |
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Preference number: 3 (lower is better) Translates to: LRPLQRSLPRCG*TFRVWEGQSPT Trigger: AGTGGGACTCTGCCCTTCCCAAACCCTGAATGTTCAGCCACACCTTGGAAGGCTCCTTTGAAGGGGGCGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR CCA 72 bp | TTGGCTGCGCCCCCTTCAAAGGAGCCTTCCAAGGTGTaGCTGAACATTCAGGGTTTGGGAAGGGCAGAGTCC | + |
|
Preference number: 3 (lower is better) Translates to: LAAPPSKEPSKV*LNIQGLGRAES Trigger: GGACTCTGCCCTTCCCAAACCCTGAATGTTCAGCCACACCTTGGAAGGCTCCTTTGAAGGGGGCGCAGCCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR-3UTR CAA 90 bp | GTTCCCTCTCATTCACTCTCTCTCTCTCTCTCACACACACACACACAGAGTTTCCAGGGGTGGGATGGGTaGGGAACACCCACCAGACAG | + |
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Preference number: 3 (lower is better) Translates to: VPSHSLSLSLSHTHTQSFQGWDG*GTPTRQ Trigger: CTGTCTGGTGGGTGTTCCCAACCCATCCCACCCCTG...GAAACTCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGTGAATGAGAGGGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CCA 90 bp | GGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACAGGTGCCCGAGGGAGGCTCTCCAGGCCGCTCTCTaGCCGCCCACCACGTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GEPPGLFGSRSNRCPREALQAAL*PPTTFL Trigger: CAAGAACGTGGTGGGCGGCCAGAGAGCGGCCTGGAG...AGCCTCCCTCGGGCACCTGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR TCA 90 bp | ATTCGGATCCAGAAGCAACAGGTGCCCGAGGGAGGCTCAGGGGGAGGAAGTGGGTGTAGGAGTCCTCACTaGGGGTGTGCAGGTCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: IRIQKQQVPEGGSGGGSGCRSPH*GCAGRP Trigger: TGGCCGACCTGCACACCCTCAGTGAGGACTCCTACA...CCCACTTCCTCCCCCTGAGCCTCCCTCGGGCACCTGTTGCTTCTGGATCCGAAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR TCA 90 bp | ATTCGGATCCAGAAGCAACAGGTGCCCGAGGGAGGCTCAGGGGGAGGAAGTGGGACCGGGCAGAATCGATaGTGCGCTTCTTGTCATCGC | + |
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Preference number: 4 (lower is better) Translates to: IRIQKQQVPEGGSGGGSGTGQNR*CASCHR Trigger: GCGATGACAAGAAGCGCATCATCGATTCTGCCCGGT...CCCACTTCCTCCCCCTGAGCCTCCCTCGGGCACCTGTTGCTTCTGGATCCGAAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CCA 90 bp | ACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACAGGTGCCCGAGCGTCGAAGGTGGTCTTaGCCAGCGAGATGGCCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: TGWGASWIIRIQKQQVPERRRWS*PARWPP Trigger: AGGAGGCCATCTCGCTGGCCAAGACCACCTTCGACG...CTCGGGCACCTGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CCA 90 bp | AAGGAGCCTTCCAAGGTGTGGCTGAACATTCAGGGTTTGGGAAGGGCAGAGTCCTCTTGGCCAGCGAGATaGCCTCCTCGGGGCTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: KEPSKVWLNIQGLGRAESSWPAR*PPRGCW Trigger: CCAACAGCCCCGAGGAGGCCATCTCGCTGGCCAAGA...GGACTCTGCCCTTCCCAAACCCTGAATGTTCAGCCACACCTTGGAAGGCTCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CCA 90 bp | GGTGGGATGGGTTGGGAACACCCACCAGACAGCTACACGAAGAGTGAGATTCCCTGGCCTCGTCGAAGGTaGTCTTGGCCAGCGAGATGG | + |
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Preference number: 4 (lower is better) Translates to: GGMGWEHPPDSYTKSEIPWPRRR*SWPARW Trigger: CCATCTCGCTGGCCAAGACCACCTTCGACGAGGCCA...GGGAATCTCACTCTTCGTGTAGCTGTCTGGTGGGTGTTCCCAACCCATCCCACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR TCA 90 bp | AGTTCTCAGCCACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACGGCCTCCTGGTAGGCTaGCCGGGCAGAATCGATGAT | + |
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Preference number: 4 (lower is better) Translates to: SSQPQGGEPPGLFGSRSNGLLVG*PGRIDD Trigger: ATCATCGATTCTGCCCGGTCAGCCTACCAGGAGGCC...GTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGTGGCTGAGAACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR TCA 90 bp | ACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACAGGTGCCCGAGCTCGTAGTGGAAGACTaGAAAGTTCAGGGCCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: TGWGASWIIRIQKQQVPELVVED*KVQGQA Trigger: GGCCTGGCCCTGAACTTTTCAGTCTTCCACTACGAG...CTCGGGCACCTGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR GCA 90 bp | CAGTCCAGTTCTCAGCCACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGATGCTCTTCTGCTCGATaGTGGACAGGACCCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QSSSQPQGGEPPGLFGSRCSSAR*WTGPSR Trigger: CCTGGAGGGTCCTGTCCAGCATCGAGCAGAAGAGCA...TCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGTGGCTGAGAACTGGACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CCA 90 bp | GTGGGATGGGTTGGGAACACCCACCAGACAGCTACACGAAGAGTGAGATTCCCTTGTGCAGGTCGGCCATaGCCTCGTCGAAGGTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: VGWVGNTHQTATRRVRFPCAGRP*PRRRWS Trigger: AGACCACCTTCGACGAGGCCATGGCCGACCTGCACA...AGGGAATCTCACTCTTCGTGTAGCTGTCTGGTGGGTGTTCCCAACCCATCCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR TCA 90 bp | ACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACAGGTGCCCGAGCCACGGCGCTCTTCATaGAAGCTGCCATGTCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: TGWGASWIIRIQKQQVPEPRRSS*KLPCLH Trigger: ATGAAGACATGGCAGCTTTCATGAAGAGCGCCGTGG...CTCGGGCACCTGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR GCA 90 bp | GGTGGGATGGGTTGGGAACACCCACCAGACAGCTACACGAAGAGTGAGATTCCCTCCTCGTTGCTCTTCTaGTCGATGCTGGACAGGACC | + |
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Preference number: 4 (lower is better) Translates to: GGMGWEHPPDSYTKSEIPSSLLF*SMLDRT Trigger: GGTCCTGTCCAGCATCGAGCAGAAGAGCAACGAGGA...GGGAATCTCACTCTTCGTGTAGCTGTCTGGTGGGTGTTCCCAACCCATCCCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CCA 90 bp | TCCAGTTCTCAGCCACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCGCCAACTTGGCCTTCTaGATCAGACTGGCTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: SSSQPQGGEPPGLFGSRSANLAF*IRLALS Trigger: GGAGAGAGCCAGTCTGATCCAGAAGGCCAAGTTGGC...GCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGTGGCTGAGAACTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CCA 90 bp | GTTCTCAGCCACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACATCTTGTCATCGCCAGTaGCCACCTCGGCTAGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: VLSHRVGSLLDYSDPEATSCHRQ*PPRLGS Trigger: GCTACCTAGCCGAGGTGGCCACTGGCGATGACAAGA...TGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGTGGCTGAGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CCA 90 bp | GTTGGGAACACCCACCAGACAGCTACACGAAGAGTGAGATTCCCTGCCCTGGTGCCTCCTCGGGGCTGTTaGCTATCTCGTAGTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: VGNTHQTATRRVRFPALVPPRGC*LSRSGR Trigger: TCTTCCACTACGAGATAGCCAACAGCCCCGAGGAGG...CACCAGGGCAGGGAATCTCACTCTTCGTGTAGCTGTCTGGTGGGTGTTCCCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| 3UTR CAA 72 bp | AAGGAGCCTTCCAAGGTGTGGCTGAACATTCAGGGTTaGGGAAGGGCAGAGTCCCACTCCGTTTTAGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: KEPSKVWLNIQG*GRAESHSVLVL Trigger: GAGGACTAAAACGGAGTGGGACTCTGCCCTTCCCAAACCCTGAATGTTCAGCCACACCTTGGAAGGCTCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR GCA 90 bp | GGTGGGATGGGTTGGGAACACCCACCAGACAGCTACACGAAGAGTGAGATTCCCGCTCTTCATGAAAGCTaGCATGTCTTCATACCGTTC | + |
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Preference number: 4 (lower is better) Translates to: GGMGWEHPPDSYTKSEIPALHES*HVFIPF Trigger: GAACGGTATGAAGACATGGCAGCTTTCATGAAGAGC...GGGAATCTCACTCTTCGTGTAGCTGTCTGGTGGGTGTTCCCAACCCATCCCACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR GCA 90 bp | GCAACTTTATTGAGTGGTAGCATGGTCACACCCAGCAAACGTGTTCCCTCTCATCTGACCCCTCCTCGTTaGTCTTCTGCTCGATGCTGG | + |
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Preference number: 4 (lower is better) Translates to: ATLLSGSMVTPSKRVPSHLTPPR*SSARCW Trigger: CCAGCATCGAGCAGAAGAGCAACGAGGAGGGGTCAG...ATGAGAGGGAACACGTTTGCTGGGTGTGACCATGCTACCACTCAATAAAGTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR TCA 90 bp | GTTCCCTCTCATTCACTCTCTCTCTCTCTCTCACACACACACACACAGAGTTTCGCATCTCCTTCTTGCTaGTGTCCATGGCCTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: VPSHSLSLSLSHTHTQSFASPSC*CPWPPG Trigger: ACCAGGAGGCCATGGACATCAGCAAGAAGGAGATGC...GAAACTCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGTGAATGAGAGGGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CAA 90 bp | AGCCACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACAGGTGCCCCCAGGCGGATGGGGTaGGTAGGCGGCATCTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: SHRVGSLLDYSDPEATGAPRRMG*VGGISF Trigger: GAAGGAGATGCCGCCTACCAACCCCATCCGCCTGGG...GGCACCTGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGTGGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CAA 90 bp | AGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACAGGTGCCCGAGGGTCGATGATGCGCTTCTaGTCATCGCCAGTGGCCACC | + |
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Preference number: 5 (lower is better) Translates to: RVGSLLDYSDPEATGARGSMMRF*SSPVAT Trigger: GGTGGCCACTGGCGATGACAAGAAGCGCATCATCGA...CCCTCGGGCACCTGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CAA 90 bp | AGCCACAGGGTGGGGAGCCTCCTGGATTATTCGGATCCAGAAGCAACAGGTGCCGGCGGCATCTCCTTCTaGCTGATGTCCATGGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: SHRVGSLLDYSDPEATGAGGISF*LMSMAS Trigger: GGAGGCCATGGACATCAGCAAGAAGGAGATGCCGCC...GGCACCTGTTGCTTCTGGATCCGAATAATCCAGGAGGCTCCCCACCCTGTGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CAA 90 bp | GGTGGGATGGGTTGGGAACACCCACCAGACAGCTACACGAAGAGTGAGATTCCCTCGTCGAAGGTGGTCTaGGCCAGCGAGATGGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: GGMGWEHPPDSYTKSEIPSSKVV*ASEMAS Trigger: GGAGGCCATCTCGCTGGCCAAGACCACCTTCGACGA...GGGAATCTCACTCTTCGTGTAGCTGTCTGGTGGGTGTTCCCAACCCATCCCACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS GCA 90 bp | GCAGGAGAGCTCCTCGCCCTTTTCCACGGCGCTCTTCATGAAAGCTaGCATGTCTTCATACCGTTCGGCCTGTTCAGCCAACTTGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: AGELLALFHGALHES*HVFIPFGLFSQLGL Trigger: AAGGCCAAGTTGGCTGAACAGGCCGAACGGTATGAAGACATGGCAGCTTTCATGAAGAGCGCCGTGGAAAAGGGCGAGGAGCTCTCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS-3UTR CAA 90 bp | GTTCCCTCTCATTCACTCTCTCTCTCTCTCTCACACACACACACACAGAGTTTCGTCCACAGCGTCAGGTaGTCTCTCAGGAGCTGCATG | + |
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Preference number: 5 (lower is better) Translates to: VPSHSLSLSLSHTHTQSFVHSVR*SLRSCM Trigger: CATGCAGCTCCTGAGAGACAACCTGACGCTGTGGAC...GAAACTCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGTGAATGAGAGGGAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS CAA 72 bp | GTGTGCAGGTCGGCCATGGCCTCGTCGAAGGTGGTCTaGGCCAGCGAGATGGCCTCCTCGGGGCTGTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: VCRSAMASSKVV*ASEMASSGLLA Trigger: AGCCAACAGCCCCGAGGAGGCCATCTCGCTGGCCAAGACCACCTTCGACGAGGCCATGGCCGACCTGCACAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS CCA 72 bp | TGTGCAGGTCGGCCATGGCCTCGTCGAAGGTGGTCTTaGCCAGCGAGATGGCCTCCTCGGGGCTGTTGGCTA | + |
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Preference number: 6 (lower is better) Translates to: CAGRPWPRRRWS*PARWPPRGCWL Trigger: TAGCCAACAGCCCCGAGGAGGCCATCTCGCTGGCCAAGACCACCTTCGACGAGGCCATGGCCGACCTGCACA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS TCA 72 bp | CCATGGCCTCCTGGTAGGCTGACCGGGCAGAATCGATaGTGCGCTTCTTGTCATCGCCAGTGGCCACCTCGG | + |
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Preference number: 6 (lower is better) Translates to: PWPPGRLTGQNR*CASCHRQWPPR Trigger: CCGAGGTGGCCACTGGCGATGACAAGAAGCGCATCATCGATTCTGCCCGGTCAGCCTACCAGGAGGCCATGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS GCA 72 bp | ACGCGGCTCTCTGCATCTCCAGCCCCTTTGATGAGGTaGGAGTCCAGCAGGCCGAGTACGGTGTCGCACACA | + |
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Preference number: 6 (lower is better) Translates to: TRLSASPAPLMR*ESSRPSTVSHT Trigger: TGTGTGCGACACCGTACTCGGCCTGCTGGACTCGCACCTCATCAAAGGGGCTGGAGATGCAGAGAGCCGCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS CAA 72 bp | TTCACCTCGGGGCCCTTCTCTTCTGACCCCTCCTCGTaGCTCTTCTGCTCGATGCTGGACAGGACCCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: FTSGPFSSDPSS*LFCSMLDRTLQ Trigger: CTGGAGGGTCCTGTCCAGCATCGAGCAGAAGAGCAACGAGGAGGGGTCAGAAGAGAAGGGCCCCGAGGTGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS CCA 72 bp | TGGTCTTGGCCAGCGAGATGGCCTCCTCGGGGCTGTTaGCTATCTCGTAGTGGAAGACTGAAAAGTTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: WSWPARWPPRGC*LSRSGRLKSSG Trigger: CCCTGAACTTTTCAGTCTTCCACTACGAGATAGCCAACAGCCCCGAGGAGGCCATCTCGCTGGCCAAGACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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| CDS GCA 72 bp | CTCCTCGCCCTTTTCCACGGCGCTCTTCATGAAAGCTaGCATGTCTTCATACCGTTCGGCCTGTTCAGCCAA | + |
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Preference number: 6 (lower is better) Translates to: LLALFHGALHES*HVFIPFGLFSQ Trigger: TTGGCTGAACAGGCCGAACGGTATGAAGACATGGCAGCTTTCATGAAGAGCGCCGTGGAAAAGGGCGAGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057311.4 |
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